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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP008934 Geobacillus stearothermophilus 10 chromosome, complete genome 5 crisprs c2c10_CAS-V-U3,RT,DEDDh,csa3,csm3gr7,csx19,cas10,csx1,cas14j,cas3,cas8b1,cas7,cas5,cas4,cas1,cas2,cas6,csm6,cmr3gr5,cmr4gr7,cmr5gr11,DinG 0 11 25 0
NZ_CP008935 Geobacillus stearothermophilus 10 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP008934
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP008934_1 1164047-1164129 TypeV-U3 NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP008934_2 2111171-2111660 TypeI-B NA
7 spacers
cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP008934_3 2122259-2123356 TypeIII NA
16 spacers
cas6,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,csm6,csx1,cas10,cmr3gr5,cmr4gr7,cmr5gr11

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP008934_4 2126507-2127866 TypeIII NA
20 spacers
cas6,cas2,cas1,cas4,cas3,cas5,cas7,csm6,csx1,cas10,cmr3gr5,cmr4gr7,cmr5gr11

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP008934_5 2139138-2139969 TypeIII NA
12 spacers
cmr5gr11,cmr4gr7,cmr3gr5,cas10,csx1,csm6,RT

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP008934_2 2.3|2111332|36|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2111332-2111367 36 NC_008376 Geobacillus phage GBSV1, complete genome 32659-32694 0 1.0
NZ_CP008934_3 3.12|2123023|38|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2123023-2123060 38 NZ_AP022558 Geobacillus subterraneus strain E55-1 plasmid pGspE55-1, complete sequence 34389-34426 1 0.974
NZ_CP008934_4 4.2|2126602|38|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2126602-2126639 38 NC_019544 Deep-sea thermophilic phage D6E, complete genome 23193-23230 1 0.974
NZ_CP008934_4 4.14|2127404|37|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2127404-2127440 37 NZ_AP022558 Geobacillus subterraneus strain E55-1 plasmid pGspE55-1, complete sequence 34504-34540 1 0.973
NZ_CP008934_4 4.18|2127668|38|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2127668-2127705 38 AB823818 Phage phi OH2 DNA, complete genome 15276-15313 1 0.974
NZ_CP008934_2 2.6|2111529|36|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2111529-2111564 36 NC_019544 Deep-sea thermophilic phage D6E, complete genome 12923-12958 2 0.944
NZ_CP008934_4 4.18|2127668|38|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2127668-2127705 38 NZ_CP015439 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence 197713-197750 2 0.947
NZ_CP008934_5 5.10|2139771|36|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2139771-2139806 36 NC_019544 Deep-sea thermophilic phage D6E, complete genome 23942-23977 2 0.944
NZ_CP008934_4 4.5|2126803|36|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2126803-2126838 36 AF133242 Spiroplasma phage SVTS2, complete genome 770-805 8 0.778
NZ_CP008934_2 2.2|2111267|35|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2111267-2111301 35 NZ_CP030864 Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence 253979-254013 9 0.743
NZ_CP008934_2 2.2|2111267|35|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2111267-2111301 35 NZ_CP012399 Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence 231191-231225 9 0.743
NZ_CP008934_3 3.5|2122559|35|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2122559-2122593 35 NZ_CP038620 Arsenophonus nasoniae strain FIN plasmid pArsFIN8, complete sequence 120057-120091 10 0.714
NZ_CP008934_3 3.16|2123292|35|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT 2123292-2123326 35 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 493311-493345 10 0.714

1. spacer 2.3|2111332|36|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to NC_008376 (Geobacillus phage GBSV1, complete genome) position: , mismatch: 0, identity: 1.0

cagatttttaatcatccgatgttcggcgatgttcga	CRISPR spacer
cagatttttaatcatccgatgttcggcgatgttcga	Protospacer
************************************

2. spacer 3.12|2123023|38|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022558 (Geobacillus subterraneus strain E55-1 plasmid pGspE55-1, complete sequence) position: , mismatch: 1, identity: 0.974

ctgttcgagttttttaaaagaattatatggtcgagcat	CRISPR spacer
atgttcgagttttttaaaagaattatatggtcgagcat	Protospacer
 *************************************

3. spacer 4.2|2126602|38|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 1, identity: 0.974

gttagtgcagtattggcgattttgcgagccaacgcggc	CRISPR spacer
gttagtgcagtgttggcgattttgcgagccaacgcggc	Protospacer
***********.**************************

4. spacer 4.14|2127404|37|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022558 (Geobacillus subterraneus strain E55-1 plasmid pGspE55-1, complete sequence) position: , mismatch: 1, identity: 0.973

tcctccgagaagaaagctctgcacgcgcttaaaagaa	CRISPR spacer
tcctccgagaagaaagctccgcacgcgcttaaaagaa	Protospacer
*******************.*****************

5. spacer 4.18|2127668|38|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to AB823818 (Phage phi OH2 DNA, complete genome) position: , mismatch: 1, identity: 0.974

ctgttttcaggcacaaataaaaaggacttggtttcttg	CRISPR spacer
ttgttttcaggcacaaataaaaaggacttggtttcttg	Protospacer
.*************************************

6. spacer 2.6|2111529|36|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 2, identity: 0.944

gacaaaaaccaataggagtcccctcgcttggcgaca	CRISPR spacer
gacaaaagccaataggagtcccctcgcctggcgaca	Protospacer
*******.*******************.********

7. spacer 4.18|2127668|38|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 2, identity: 0.947

ctgttttcaggcacaaataaaaaggacttggtttcttg	CRISPR spacer
ttggtttcaggcacaaataaaaaggacttggtttcttg	Protospacer
.** **********************************

8. spacer 5.10|2139771|36|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 2, identity: 0.944

acgtagccggagaaatttttcttggacacgtacttc	CRISPR spacer
acatagccggagaaattttttttggacacgtacttc	Protospacer
**.*****************.***************

9. spacer 4.5|2126803|36|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to AF133242 (Spiroplasma phage SVTS2, complete genome) position: , mismatch: 8, identity: 0.778

aatgtatttattgctttttatttcatagtattttta	CRISPR spacer
gatgtatttattgttttttatttaatatttggttga	Protospacer
.************.********* *** *   ** *

10. spacer 2.2|2111267|35|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

caggc--atgggggcaggccgtcgccgcaggcggtga	CRISPR spacer
--ggccagcaggggcaggccgtcgccgtcggcggtcg	Protospacer
  ***  ...*****************. ****** .

11. spacer 2.2|2111267|35|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 9, identity: 0.743

-caggcatgggggcaggccgtcgccgcaggcggtga	CRISPR spacer
accgacg-atgggcaggccgtcgcggcaggccgtgc	Protospacer
 * *.*. . ************** ****** *** 

12. spacer 3.5|2122559|35|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038620 (Arsenophonus nasoniae strain FIN plasmid pArsFIN8, complete sequence) position: , mismatch: 10, identity: 0.714

attgaaacgatagagcatcgacatcaaccggttgt	CRISPR spacer
acgcactggatagagcatcgacaacaaccagttac	Protospacer
*.  *   *************** *****.***..

13. spacer 3.16|2123292|35|NZ_CP008934|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.714

cgatgcatcgagtacatacaggaggcgctgcaaaa	CRISPR spacer
gatcgcatcgagtccatacagcaggcgctggattt	Protospacer
 . .********* ******* ******** *   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 5466 : 52923 44 Streptococcus_phage(33.33%) integrase,transposase,coat attL 6508:6523|attR 49235:49250
DBSCAN-SWA_2 83976 : 93520 11 Pseudomonas_phage(33.33%) capsid,head NA
DBSCAN-SWA_3 99524 : 107344 9 Faecalibacterium_phage(33.33%) tail,plate NA
DBSCAN-SWA_4 135651 : 271553 116 Bacillus_phage(14.29%) terminase,holin,capsid,lysis,transposase,integrase,tRNA attL 217429:217467|attR 273326:273364
DBSCAN-SWA_5 825390 : 888994 58 Pseudomonas_phage(28.57%) protease,coat,tRNA NA
DBSCAN-SWA_6 1086553 : 1146469 55 Staphylococcus_phage(64.71%) holin,transposase,tRNA NA
DBSCAN-SWA_7 1195758 : 1248103 57 Streptococcus_phage(16.67%) coat,transposase NA
DBSCAN-SWA_8 1330225 : 1339114 10 Streptococcus_phage(28.57%) NA NA
DBSCAN-SWA_9 1373827 : 1382290 10 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_10 1442120 : 1497298 40 Streptococcus_phage(25.0%) protease,integrase,transposase attL 1443558:1443617|attR 1497299:1497563
DBSCAN-SWA_11 1524182 : 1588404 55 Bacillus_phage(30.77%) transposase NA
DBSCAN-SWA_12 1663136 : 1716022 55 Bacillus_phage(16.67%) protease,transposase,coat,tRNA NA
DBSCAN-SWA_13 1733028 : 1742786 8 uncultured_Mediterranean_phage(16.67%) NA NA
DBSCAN-SWA_14 1978558 : 2113517 109 Pseudomonas_phage(12.12%) protease,coat,holin,transposase,tRNA NA
DBSCAN-SWA_15 2124241 : 2180556 47 Rhodobacter_phage(11.11%) integrase,transposase attL 2127241:2127277|attR 2139138:2139174
DBSCAN-SWA_16 2450070 : 2496796 41 Staphylococcus_phage(20.0%) transposase,bacteriocin NA
DBSCAN-SWA_17 2510010 : 2569064 59 Streptococcus_phage(50.0%) protease,transposase NA
DBSCAN-SWA_18 2621014 : 2684133 59 Bacillus_phage(38.46%) integrase,transposase,coat,bacteriocin attL 2617584:2617598|attR 2639589:2639603
DBSCAN-SWA_19 2761455 : 2767940 10 Pneumococcus_phage(33.33%) NA NA
DBSCAN-SWA_20 2858735 : 2945416 62 Liberibacter_phage(18.18%) protease,integrase,transposase attL 2892502:2892532|attR 2930100:2930130
DBSCAN-SWA_21 2971586 : 2981442 11 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_22 3013568 : 3034323 23 uncultured_Mediterranean_phage(25.0%) protease,coat,transposase NA
DBSCAN-SWA_23 3111085 : 3217789 77 Wolbachia_phage(22.22%) protease,transposase NA
DBSCAN-SWA_24 3401831 : 3537968 117 Rhodobacter_phage(11.11%) integrase,transposase,bacteriocin attL 3403921:3403942|attR 3476714:3476735
DBSCAN-SWA_25 3549788 : 3610171 50 Streptococcus_phage(28.57%) integrase,transposase,tRNA attL 3546441:3546457|attR 3563498:3563514
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage