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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011010 Stenotrophomonas maltophilia strain ISMMS3 isolate Patient 2 chromosome 1, complete sequence 8 crisprs csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,DinG 0 5 4 0

Results visualization

1. NZ_CP011010
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011010_1 569114-569315 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011010_2 846314-846419 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011010_3 1470522-1470695 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011010_4 1939399-1939495 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011010_5 3204064-3204192 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011010_6 3370625-3370776 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011010_7 3487327-3487510 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011010_8 4525825-4525923 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011010_5 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder 3204142-3204168 27 NZ_CP031166 Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence 154070-154096 4 0.852
NZ_CP011010_5 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder 3204142-3204168 27 NZ_CP031079 Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence 237140-237166 5 0.815
NZ_CP011010_5 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder 3204142-3204168 27 NC_042025 Salmonella phage SE1 (in:Nonagvirus), complete genome 57034-57060 5 0.815
NZ_CP011010_5 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder 3204142-3204168 27 NZ_CP024587 Roseomonas sp. FDAARGOS_362 plasmid unnamed3, complete sequence 37937-37963 5 0.815
NZ_CP011010_5 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder 3204142-3204168 27 NZ_CP011450 Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence 56568-56594 5 0.815
NZ_CP011010_5 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder 3204142-3204168 27 KP719132 Enterobacteria phage JenP1, complete genome 23481-23507 5 0.815
NZ_CP011010_5 5.1|3204088|30|NZ_CP011010|CRISPRCasFinder 3204088-3204117 30 MN094788 Achromobacter phage Motura, complete genome 28976-29005 6 0.8
NZ_CP011010_5 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder 3204142-3204168 27 NZ_CP015734 Arthrobacter sp. U41 plasmid unnamed2, complete sequence 73181-73207 6 0.778
NZ_CP011010_5 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder 3204142-3204168 27 NZ_CP015734 Arthrobacter sp. U41 plasmid unnamed2, complete sequence 166073-166099 6 0.778
NZ_CP011010_5 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder 3204142-3204168 27 MK373794 Escherichia phage vB_EcoS_HdK1, complete genome 32361-32387 6 0.778
NZ_CP011010_5 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder 3204142-3204168 27 MK373795 Escherichia phage vB_EcoS_HdSG1, complete genome 32209-32235 6 0.778
NZ_CP011010_5 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder 3204142-3204168 27 NC_028997 Enterobacteria phage JenP2, complete genome 23426-23452 6 0.778
NZ_CP011010_5 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder 3204142-3204168 27 NC_029021 Enterobacteria phage JenK1, complete genome 24136-24162 6 0.778
NZ_CP011010_3 3.1|1470552|34|NZ_CP011010|CRISPRCasFinder 1470552-1470585 34 NZ_CP031947 Ruegeria sp. AD91A plasmid unnamed1, complete sequence 333463-333496 7 0.794
NZ_CP011010_5 5.1|3204088|30|NZ_CP011010|CRISPRCasFinder 3204088-3204117 30 NZ_CP024424 Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence 133019-133048 7 0.767
NZ_CP011010_5 5.1|3204088|30|NZ_CP011010|CRISPRCasFinder 3204088-3204117 30 MH651189 Gordonia phage Schmidt, complete genome 8635-8664 8 0.733
NZ_CP011010_3 3.1|1470552|34|NZ_CP011010|CRISPRCasFinder 1470552-1470585 34 NZ_CP045385 Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence 441883-441916 9 0.735
NZ_CP011010_7 7.1|3487346|35|NZ_CP011010|CRT 3487346-3487380 35 NZ_CP054618 Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence 332599-332633 9 0.743
NZ_CP011010_7 7.2|3487400|35|NZ_CP011010|CRT 3487400-3487434 35 NZ_CP041605 Streptomyces sp. S1D4-14 plasmid pS1D4-14.1, complete sequence 88150-88184 10 0.714
NZ_CP011010_7 7.2|3487400|35|NZ_CP011010|CRT 3487400-3487434 35 NZ_CP038146 Streptomyces sp. S501 plasmid unnamed, complete sequence 269856-269890 10 0.714

1. spacer 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 4, identity: 0.852

ggcggtttcggtggtgaaggccgtggt	CRISPR spacer
ggcggcttcggtggtgacggccgtgag	Protospacer
*****.*********** *******. 

2. spacer 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 5, identity: 0.815

ggcggtttcggtggtgaaggccgtggt	CRISPR spacer
cacggtttcgtcggtgaaggccgtggg	Protospacer
 .******** .************** 

3. spacer 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder matches to NC_042025 (Salmonella phage SE1 (in:Nonagvirus), complete genome) position: , mismatch: 5, identity: 0.815

ggcggtttcggtggtgaaggccgtggt	CRISPR spacer
ggcggtttcggtggtgaagctggtgca	Protospacer
******************* . ***  

4. spacer 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder matches to NZ_CP024587 (Roseomonas sp. FDAARGOS_362 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.815

ggcggtttcggtggtgaaggccgtggt	CRISPR spacer
ggcggttgcggtggtgaaggcagagtg	Protospacer
******* ************* * *  

5. spacer 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder matches to NZ_CP011450 (Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence) position: , mismatch: 5, identity: 0.815

ggcggtttcggtggtgaaggccgtggt	CRISPR spacer
gcgggtttcgggggtgaaggccgtcgc	Protospacer
*  ******** ************ *.

6. spacer 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder matches to KP719132 (Enterobacteria phage JenP1, complete genome) position: , mismatch: 5, identity: 0.815

ggcggtttcggtggtgaaggccgtggt	CRISPR spacer
ggcggtttcggtggtgaagctggtgca	Protospacer
******************* . ***  

7. spacer 5.1|3204088|30|NZ_CP011010|CRISPRCasFinder matches to MN094788 (Achromobacter phage Motura, complete genome) position: , mismatch: 6, identity: 0.8

ccgtacggcaagccgaagggtccgggcgca	CRISPR spacer
ccgtacggcaatccgaagggtgaaggcaaa	Protospacer
*********** *********  .***. *

8. spacer 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder matches to NZ_CP015734 (Arthrobacter sp. U41 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.778

ggcggtttcggtggtgaaggccgtggt	CRISPR spacer
ggcggcgtcggtggtgaaggccggttc	Protospacer
*****. ****************   .

9. spacer 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder matches to NZ_CP015734 (Arthrobacter sp. U41 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.778

ggcggtttcggtggtgaaggccgtggt	CRISPR spacer
ggcggcgtcggtggtgaaggccggttc	Protospacer
*****. ****************   .

10. spacer 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder matches to MK373794 (Escherichia phage vB_EcoS_HdK1, complete genome) position: , mismatch: 6, identity: 0.778

ggcggtttcggtggtgaaggccgtggt	CRISPR spacer
ggcggtttcggtggtgaagctggcgca	Protospacer
******************* . *.*  

11. spacer 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder matches to MK373795 (Escherichia phage vB_EcoS_HdSG1, complete genome) position: , mismatch: 6, identity: 0.778

ggcggtttcggtggtgaaggccgtggt	CRISPR spacer
ggcggtttcggtggtgaagctggcgca	Protospacer
******************* . *.*  

12. spacer 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder matches to NC_028997 (Enterobacteria phage JenP2, complete genome) position: , mismatch: 6, identity: 0.778

ggcggtttcggtggtgaaggccgtggt	CRISPR spacer
ggcggtttcggtggtgaagctggcgca	Protospacer
******************* . *.*  

13. spacer 5.2|3204142|27|NZ_CP011010|CRISPRCasFinder matches to NC_029021 (Enterobacteria phage JenK1, complete genome) position: , mismatch: 6, identity: 0.778

ggcggtttcggtggtgaaggccgtggt	CRISPR spacer
ggcggtttcggtggtgaagctggcgca	Protospacer
******************* . *.*  

14. spacer 3.1|1470552|34|NZ_CP011010|CRISPRCasFinder matches to NZ_CP031947 (Ruegeria sp. AD91A plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

ctatcgaaatgcctgacgggctcggctttggtag	CRISPR spacer
tttttgaaatgcctgacgggtttggctttggctg	Protospacer
.* *.***************.*.********. *

15. spacer 5.1|3204088|30|NZ_CP011010|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 7, identity: 0.767

ccgtacggcaagccgaagggtccgggcgca	CRISPR spacer
gggatcggcaaggccaagggtccgggcgcc	Protospacer
  *  ******* * ************** 

16. spacer 5.1|3204088|30|NZ_CP011010|CRISPRCasFinder matches to MH651189 (Gordonia phage Schmidt, complete genome) position: , mismatch: 8, identity: 0.733

ccgtacggcaagccgaagggtccgggcgca	CRISPR spacer
aagccgggcaagccgaagggtgcgggcggt	Protospacer
  *.  *************** ******  

17. spacer 3.1|1470552|34|NZ_CP011010|CRISPRCasFinder matches to NZ_CP045385 (Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence) position: , mismatch: 9, identity: 0.735

ctatcgaaatgcctgacgggctcggctttggtag	CRISPR spacer
ttgatgaaatgcctgacgggtttggcttttgcgg	Protospacer
.*. .***************.*.****** *..*

18. spacer 7.1|3487346|35|NZ_CP011010|CRT matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.743

cgtcaagcttcggggtctgcaggcgtgcactgaca	CRISPR spacer
cgtcaatcttcggggtctggaggcgatcggccgca	Protospacer
****** ************ *****  *. . .**

19. spacer 7.2|3487400|35|NZ_CP011010|CRT matches to NZ_CP041605 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.1, complete sequence) position: , mismatch: 10, identity: 0.714

gtttgctgtcgccactgcgcccggccgcgctcagg	CRISPR spacer
ggcggctgccgccacggcgcccggccgcgtcacga	Protospacer
* . ****.****** *************..  *.

20. spacer 7.2|3487400|35|NZ_CP011010|CRT matches to NZ_CP038146 (Streptomyces sp. S501 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

gtttgctgtcgccactgcgcccggccgcgctcagg	CRISPR spacer
gcttgctgtcgccaccgctcccggccggggcagcc	Protospacer
*.*************.** ******** * . .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 994751 : 1014361 29 Rhizobium_phage(35.71%) tail,head NA
DBSCAN-SWA_2 1018308 : 1138576 116 Escherichia_phage(17.24%) integrase,tail,plate,capsid,transposase,head,protease attL 1070725:1070771|attR 1081453:1081499
DBSCAN-SWA_3 1857441 : 1880345 26 Xanthomonas_virus(23.53%) tail,terminase,head NA
DBSCAN-SWA_4 2908944 : 2937005 39 uncultured_Caudovirales_phage(25.0%) portal,terminase,tail,capsid,head,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage