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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012257 Cronobacter universalis NCTC 9529 chromosome, complete genome 11 crisprs DEDDh,csa3,DinG,cas3,RT 0 4 4 0
NZ_CP012258 Cronobacter universalis NCTC 9529 plasmid pCUNV1, complete sequence 0 crisprs WYL,csa3 0 0 0 0

Results visualization

1. NZ_CP012257
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012257_1 197216-197305 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012257_2 304142-304244 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012257_3 556886-556981 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012257_4 1117490-1117946 Orphan I-E
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012257_5 1392708-1392796 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012257_6 1907051-1907127 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012257_7 1997520-1997604 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012257_8 2207810-2207904 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012257_9 2742086-2742232 Orphan NA
2 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012257_10 3266644-3266726 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012257_11 4049874-4049959 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012257_4 4.1|1117519|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT 1117519-1117550 32 NZ_CP039697 Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence 345132-345163 8 0.75
NZ_CP012257_2 2.1|304177|33|NZ_CP012257|CRISPRCasFinder 304177-304209 33 NZ_LR134469 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 27, complete sequence 131630-131662 9 0.727
NZ_CP012257_4 4.1|1117519|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT 1117519-1117550 32 NZ_AP020328 Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p2-JPH1, complete sequence 20377-20408 9 0.719
NZ_CP012257_4 4.1|1117519|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT 1117519-1117550 32 NZ_CP015270 Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 3, complete sequence 12902-12933 9 0.719
NZ_CP012257_4 4.1|1117519|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT 1117519-1117550 32 NZ_CP022224 Mycobacterium chimaera strain SJ42 plasmid unnamed1, complete sequence 19496-19527 9 0.719
NZ_CP012257_4 4.1|1117519|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT 1117519-1117550 32 NC_009620 Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence 94849-94880 9 0.719
NZ_CP012257_4 4.5|1117763|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT 1117763-1117794 32 KF005320 Alteromonas phage vB_AmaP_AD45-P2, complete genome 44385-44416 9 0.719
NZ_CP012257_4 4.6|1117824|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT 1117824-1117855 32 MH651168 Gordonia phage Ashertheman, complete genome 46011-46042 9 0.719
NZ_CP012257_4 4.6|1117824|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT 1117824-1117855 32 NC_023006 Pseudomonas phage PPpW-3 DNA, complete sequence 7673-7704 10 0.688
NZ_CP012257_4 4.1|1117519|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT 1117519-1117550 32 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 303454-303485 11 0.656

1. spacer 4.1|1117519|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 8, identity: 0.75

cgcgcgggcgcgcggttacggtgattagtttt	CRISPR spacer
cgcgccggcgcgccgttacggtgatcgtctcg	Protospacer
***** ******* ***********.. .*. 

2. spacer 2.1|304177|33|NZ_CP012257|CRISPRCasFinder matches to NZ_LR134469 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 27, complete sequence) position: , mismatch: 9, identity: 0.727

cgcccgcaataaacagtgcgatgtagtttgtgg	CRISPR spacer
cgcccgcactgaacagtgcgatgtcgagccccg	Protospacer
******** *.************* *  . . *

3. spacer 4.1|1117519|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP020328 (Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p2-JPH1, complete sequence) position: , mismatch: 9, identity: 0.719

cgcgcgggcgcgcggttacggtgattagtttt	CRISPR spacer
cgaccgggcgcgcggttgcggcgattatggcc	Protospacer
**  *************.***.*****   ..

4. spacer 4.1|1117519|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015270 (Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 3, complete sequence) position: , mismatch: 9, identity: 0.719

cgcgcgggcgcgcggttacggtgattagtttt	CRISPR spacer
cgaccgggcgcgcggttgcggcgattatggcc	Protospacer
**  *************.***.*****   ..

5. spacer 4.1|1117519|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022224 (Mycobacterium chimaera strain SJ42 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cgcgcgggcgcgcggttacggtgattagtttt	CRISPR spacer
cgaccgggcgcgcggttgcggcgattatggcc	Protospacer
**  *************.***.*****   ..

6. spacer 4.1|1117519|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 9, identity: 0.719

cgcgcgggcgcgcggttacggtgattagtttt	CRISPR spacer
gcggcaggcgcgcggttacggcgattggatca	Protospacer
   **.***************.****.* *. 

7. spacer 4.5|1117763|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT matches to KF005320 (Alteromonas phage vB_AmaP_AD45-P2, complete genome) position: , mismatch: 9, identity: 0.719

cgcggcgcactggataacgctaaccgagtgcg	CRISPR spacer
ggcggagcactggataaagctaaccaaagtta	Protospacer
 **** *********** *******.*.  ..

8. spacer 4.6|1117824|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT matches to MH651168 (Gordonia phage Ashertheman, complete genome) position: , mismatch: 9, identity: 0.719

acctgaccaatgacgacggcgggtttggcttg	CRISPR spacer
ccgcagaccatgacggcggcgcgtttggcttg	Protospacer
 * ... * ******.***** **********

9. spacer 4.6|1117824|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT matches to NC_023006 (Pseudomonas phage PPpW-3 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

acctgaccaatgacgacggcgggtttggcttg	CRISPR spacer
tgcagactgatgacgacggcgggtttgcacaa	Protospacer
  * ***..******************  . .

10. spacer 4.1|1117519|32|NZ_CP012257|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.656

cgcgcgggcgcgcggttacggtgattagtttt	CRISPR spacer
cgcgcgggcccgcggtgacggtgccgccgacc	Protospacer
********* ****** ****** .     ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1831823 : 1842022 12 Tupanvirus(14.29%) tRNA NA
DBSCAN-SWA_2 2035518 : 2084249 80 Cronobacter_phage(49.09%) tail,holin,capsid,protease,terminase NA
DBSCAN-SWA_3 2701095 : 2712697 11 Bacillus_phage(28.57%) NA NA
DBSCAN-SWA_4 3547505 : 3576509 25 Cronobacter_phage(38.46%) portal,capsid,transposase,tRNA,terminase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage