CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013940	Cronobacter malonaticus LMG 23826 chromosome, complete genome	16 crisprs	cas3,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	14	6	1
NZ_CP013942	Cronobacter malonaticus LMG 23826 plasmid pCMA2, complete sequence	0 crisprs	csa3	0	0	0
NZ_CP013941	Cronobacter malonaticus LMG 23826 plasmid pCMA1, complete sequence	0 crisprs	WYL,csa3	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013940_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_1

35828-35949

Orphan

Consensus_repeat	Method
CCCCTACAAAATATGCGGCCTGTGTAGGGCGGGTAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_1

>merge|NZ_CP013940|1|35828-35949|CRISPRCasFinder
CCCCTACAAAATATGCGGCCTGTGTAGGGCGGGTAAGCCTGCGCACCCGTCGGGGAGCAGATGGTGGATGCGCTGCGCTTATCTACCCCACAAAATATGCGGCCTGTGTAGGGCGGGTAAGC

>NZ_CP013940|1|1|35828-35949|CRISPRCasFinder
CCCCTACAAAATATGCGGCCTGTGTAGGGCGGGTAAGC	CTGCGCACCCGTCGGGGAGCAGATGGTGGATGCGCTGCGCTTATCT
ACCCCACAAAATATGCGGCCTGTGTAGGGCGGGTAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_032968483.1\|27857_28316_-\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|377758
NZ_CP013940.1\|WP_007779123.1\|50397_52323_+\|sensor-domain-containing-phosphodiesterase	unknown	unknown	gnl\|CDD\|184143
NZ_CP013940.1\|WP_007779164.1\|32827_33730_+\|dipeptide-ABC-transporter-permease-DppC	unknown	unknown	gnl\|CDD\|182833
NZ_CP013940.1\|WP_007779140.1\|37900_39475_-\|cellulose-biosynthesis-protein-BcsE	unknown	unknown	gnl\|CDD\|371330
NZ_CP013940.1\|WP_071602978.1\|43201_45634_+\|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB	unknown	unknown	gnl\|CDD\|236851
NZ_CP013940.1\|WP_007779181.1\|25610_27290_+\|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase	unknown	unknown	gnl\|CDD\|183198
NZ_CP013940.1\|WP_023897803.1\|46737_50241_+\|cellulose-biosynthesis-protein-BcsC	unknown	unknown	gnl\|CDD\|183140
NZ_CP013940.1\|WP_032968484.1\|23646_24849_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273323
NZ_CP013940.1\|WP_007779161.1\|33741_34737_+\|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182906
NZ_CP013940.1\|WP_007779159.1\|34723_35737_+\|dipeptide-ABC-transporter-ATP-binding-subunit-DppF	unknown	unknown	gnl\|CDD\|236898
NZ_CP013940.1\|WP_023897799.1\|40572_43191_+\|UDP-forming-cellulose-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|236918
NZ_CP013940.1\|WP_032968482.1\|29995_31603_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP013940.1\|WP_007779176.1\|28305_29235_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340389
NZ_CP013940.1\|WP_004387619.1\|31798_32818_+\|dipeptide-ABC-transporter-permease-DppB	unknown	unknown	gnl\|CDD\|182834
NZ_CP013940.1\|WP_007779131.1\|45640_46756_+\|cellulase	unknown	unknown	gnl\|CDD\|236844
NZ_CP013940.1\|WP_007779144.1\|37706_37904_-\|cellulose-biosynthesis-protein-BcsF	unknown	unknown	gnl\|CDD\|371386
NZ_CP013940.1\|WP_007779183.1\|24967_25399_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP013940.1\|WP_032983121.1\|36028_37714_-\|cellulose-biosynthesis-protein-BcsG	unknown	unknown	gnl\|CDD\|371656
NZ_CP013940.1\|WP_007779139.1\|39847_40576_+\|cellulose-synthase-operon-protein-YhjQ	unknown	unknown	gnl\|CDD\|368976
NZ_CP013940.1\|WP_004387626.1\|39647_39851_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371309

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_032968483.1\|27857_28316_-\|DUF1311-domain-containing-protein	gnl\|CDD\|377758	pfam07007, LprI, Lysozyme inhibitor LprI. This family consists of several bacterial proteins of around 120 residues in length. Members of this family contain four highly conserved cysteine residues. Family members include lipoprotein LprI from Mycobacterium, which binds to and inhibits macrophage lysozyme, which may aid bacterial survival.	4.26365e-08
NZ_CP013940.1\|WP_007779123.1\|50397_52323_+\|sensor-domain-containing-phosphodiesterase	gnl\|CDD\|184143	PRK13561, PRK13561, putative diguanylate cyclase; Provisional.	0
NZ_CP013940.1\|WP_007779164.1\|32827_33730_+\|dipeptide-ABC-transporter-permease-DppC	gnl\|CDD\|182833	PRK10913, PRK10913, dipeptide ABC transporter permease DppC.	0
NZ_CP013940.1\|WP_007779140.1\|37900_39475_-\|cellulose-biosynthesis-protein-BcsE	gnl\|CDD\|371330	pfam10995, CBP_GIL, GGDEF I-site like or GIL domain. The GIL domain, for GGDEF I-site like domain, is a c-di-GMP binding domain on the BcsE proteins of enterobacteria. It is not essentail for cellulose synthesis but is critical for maximal cellulose production. Cellulose production in enterobacteria is controlled by a two-tiered c-di-GMP-dependent system involving BcsE and the PilZ domain containing glycosyltransferase BcsA.	0
NZ_CP013940.1\|WP_071602978.1\|43201_45634_+\|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB	gnl\|CDD\|236851	PRK11114, PRK11114, cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB.	0
NZ_CP013940.1\|WP_007779181.1\|25610_27290_+\|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase	gnl\|CDD\|183198	PRK11560, PRK11560, kdo(2)-lipid A phosphoethanolamine 7''-transferase.	0
NZ_CP013940.1\|WP_023897803.1\|46737_50241_+\|cellulose-biosynthesis-protein-BcsC	gnl\|CDD\|183140	PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional.	0
NZ_CP013940.1\|WP_032968484.1\|23646_24849_+\|MFS-transporter	gnl\|CDD\|273323	TIGR00890, Uncharacterized_MFS-type_transporter_YhjX, oxalate/formate antiporter family transporter. This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	5.68732e-123
NZ_CP013940.1\|WP_007779161.1\|33741_34737_+\|dipeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182906	PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional.	0
NZ_CP013940.1\|WP_007779159.1\|34723_35737_+\|dipeptide-ABC-transporter-ATP-binding-subunit-DppF	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	0
NZ_CP013940.1\|WP_023897799.1\|40572_43191_+\|UDP-forming-cellulose-synthase-catalytic-subunit	gnl\|CDD\|236918	PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional.	0
NZ_CP013940.1\|WP_032968482.1\|29995_31603_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP013940.1\|WP_007779176.1\|28305_29235_-\|hypothetical-protein	gnl\|CDD\|340389	cd16903, pesticin_lyz-like, pesticin C-terminal-like domain of uncharacterized proteins. This subfamily is composed of uncharacterized proteins containing a lysozyme-like domain similar to the C-terminal domain of pesticin. Some members also contain an EF hand domain. Pesticin (Pst) is an anti-bacterial toxin produced by Yersinia pestis that acts through uptake by the target related bacteria and the hydrolysis of peptidoglycan in the periplasm. Pst contains an N-terminal translocation domain, an intermediate receptor binding domain, and a phage-lysozyme like C-terminal activity domain. Bacteriocins such as pesticin are produced by gram-negative bacteria to attack related bacterial stains. Pst is transported to the periplasm via FyuA, an outer-membrane receptor of Y. pestis and E. coli, where it hydrolyzes peptidoglycan via the cleavage of N-acetylmuramic acid and C4 of N-acetylglucosamine. Disruption of the peptidoglycan layer renders the bacteria vulnerable to lysis via osmotic pressure. The pesticin C-terminal domain resembles the lysozyme-like family, which includes soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.	2.30092e-54
NZ_CP013940.1\|WP_004387619.1\|31798_32818_+\|dipeptide-ABC-transporter-permease-DppB	gnl\|CDD\|182834	PRK10914, PRK10914, dipeptide ABC transporter permease DppB.	0
NZ_CP013940.1\|WP_007779131.1\|45640_46756_+\|cellulase	gnl\|CDD\|236844	PRK11097, PRK11097, cellulase.	0
NZ_CP013940.1\|WP_007779144.1\|37706_37904_-\|cellulose-biosynthesis-protein-BcsF	gnl\|CDD\|371386	pfam11120, CBP_BcsF, Cellulose biosynthesis protein BcsF. CBP_BcsF is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)).	1.46296e-20
NZ_CP013940.1\|WP_007779183.1\|24967_25399_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.01474e-78
NZ_CP013940.1\|WP_032983121.1\|36028_37714_-\|cellulose-biosynthesis-protein-BcsG	gnl\|CDD\|371656	pfam11658, CBP_BcsG, Cellulose biosynthesis protein BcsG. CBP_BcsG is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)).	0
NZ_CP013940.1\|WP_007779139.1\|39847_40576_+\|cellulose-synthase-operon-protein-YhjQ	gnl\|CDD\|368976	pfam06564, CBP_BcsQ, Cellulose biosynthesis protein BcsQ. This is a family of bacterial proteins involved in cellulose biosynthesis. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)). A second component of the extracellular matrix of the multicellular morphotype (rdar) of Salmonella typhimurium and Escherichia coli is cellulose. The family does contain a P-loop sequence motif suggesting a nucleotide binding function, but this has not been confirmed.	3.55517e-127
NZ_CP013940.1\|WP_004387626.1\|39647_39851_+\|hypothetical-protein	gnl\|CDD\|371309	pfam10945, CBP_BcsR, Cellulose biosynthesis protein BcsR. CBP_BcsR is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation).	8.71146e-17

>NZ_CP013940.1|WP_007779159.1|34723_35737_+|dipeptide-ABC-transporter-ATP-binding-subunit-DppF
MSTHEATLQQPLLQAIDLKKHYPVKKGLFAPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKPDETAEKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTRLSKEARREKALAMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQDMGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFSNPRHPYTQALLSATPRLNPDDRRERIKLTGELPSPLNPPPGCAFSARCRRRFGPCTQIQPQLKEYNGQLVACFAVDQDETGEPRIP
>NZ_CP013940.1|WP_007779161.1|33741_34737_+|dipeptide-ABC-transporter-ATP-binding-protein
MALLNVDKLSVHFGDEGTPFRAVDRVSYSVNQGEVVGIVGESGSGKSVSSLAIMGLIDFPGRVMADKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNLVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALILITHDLALVAEAAHKIIVMYAGQVVETGEARDIFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPTGCLLNPRCPYATERCRAEEPALNLVDNGRQSKCHYPLDDAGRPTNYEHA
>NZ_CP013940.1|WP_007779164.1|32827_33730_+|dipeptide-ABC-transporter-permease-DppC
MTQITENKVVAAPVPMTPMQEFWHYFKRNKGAVVGLVYVVIMILIAVFANIVAPHNPAEQFRDALLAPPVWQDGGSWAHILGTDDVGRDVMSRLMYGARLSLLVGCLVVVLSLVMGIVLGLVAGYFGGIVDTIIMRIVDIMLALPSLLLALVLVAIFGPSIVNASLALTFVALPHYVRLTRAAVLVEVSRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ
>NZ_CP013940.1|WP_004387619.1|31798_32818_+|dipeptide-ABC-transporter-permease-DppB
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGDLGLSLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQLNLTPVSGRVSDMVFLDDTNPLTGFMLIDTAIWGEEGNFIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK
>NZ_CP013940.1|WP_032968482.1|29995_31603_+|ABC-transporter-substrate-binding-protein
MSISLKKSGMLKFGLSLLAMTCAAGVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPIYNRLVEFKTGTTEIIPGLAEKWDVSEDGKTYTFHLRKGVKWQDNKDFKPTREFNADDVVFSFDRQKNDQNPYHKVSGGSYEYFEGMGLPTLISEVKKVDDNTVQFVLTRPEAPFLADMAMDFASILSKEYADNMLKAGTPEKVDLNPIGTGPFQLLQYQKDSRILYKAFPGFWGTKPKIDRLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKNINLMEQAGLNVGYLSFNTEKKPFDDVKVRQALTYAVNKDAIIKAVYQGAGVAAKNLIPPTMWGYNDDVKDYTYDVEKAKALLKEAGQDKGFTVELWAMPVQRPYNPNARRMAEMIQADWAKIGVQAKIVTYEWGEYLKRAKAGEHQAVMMGWTGDNGDPDNFFATLFSCDAAKDGSNYSRWCYKPFEDLIQPARATDDHNKRIELYKQAQVVMHDQAPALIVAHSTVYEPVRKEVKGYVVDPLGKHHFENVSVE
>NZ_CP013940.1|WP_007779176.1|28305_29235_-|hypothetical-protein
MKRNFHEPRVLRLQSSVGVCGVNYADDVKALQELMMKAGYQTATGRSLKVDGICNNETKEAIIWYQRLLTLSRSGLVQPFDQWFIEALKNASQPDWRPRITSGPLHVREAQFTFDNEGTDYITATNPFRPHPYPWFSRILHWPHSAASGVTLGRGYDMGNRSAGEIFATLRQAGIEEYKAILASKAAFLKGREAASFVKFYGPLFGEITHQQQLRLFEIAIQFYISEAKRIFNGRKARMMSAISWEKMRVRLKDIYIDSLYQGCESAGEFARLILLDDLKSVRLYLKTDRAQMNSHGRNLKRLQYINGL
>NZ_CP013940.1|WP_032968483.1|27857_28316_-|DUF1311-domain-containing-protein
MGYKLVFFLPFLLIPTTCVAASSIIYGEAAKMCAKSADYAAGTRCLERQRKQTEQALQQTLAAALKQVQSEDWLEANADYEDEDSQIVVDTANALKNDQAAWEKHKVLFCQAASSQISAKTPNYWVLATQCEINMNKARIDELNALMAQVQP
>NZ_CP013940.1|WP_007779181.1|25610_27290_+|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase
MKYILSMTQQKLCILLAVYIGLFFNCAVLYRRFDGYAQNLSWINAVSMVVELAATVLVTFFLLRVLSLLGRRVWRVLASLVVLFSAAASYYMTFMNVVIGYGIIASVMTTDIDLSKEVVGWQFIVWMVLVCIVPLALIWGSRCRDTLLRQLRTRDQRLKSAAVVIVAGLLVWAPIRLLDLQQKNEERTSGVDMPSYGGVVANSYLPSNWLSALGLYAWAQVDESSDNKSLLNPAKKFTWQAPQGIDDTYVVFIIGETTRWDHMGLLGYDRNTTPKLAQEKNLAAFRGESCDTATKLSLRCMFVREGGADDNPQRTLKEQNVFAVLKQLGFSSDLYAMQSEMWFYSNTMADNIAYREQIGAEPRNRGKQVDDMLLVDEMKNSLVGHDKGKHLIILHTKGSHYNYVQRYPRSYARWQPECMGVDSDCSRQELINAYDNSVLYVDSFISDVIDQVRNKKAIVFYAADHGESINEKEHLHGTPRNVAPPEQFRVPMMVWMSDSYLADPQHAQAFAQLKLQAEQKRPHRHVELFDTIMGCLGYQSPDGGINQNNNWCHVPSAAK
>NZ_CP013940.1|WP_007779183.1|24967_25399_+|organic-hydroperoxide-resistance-protein
MSLEKVVYRAKAKATGGRDGRATSDDGVLDVKLGVPKEMGGQGGQVTNPEQLFAAGYSACFLGALKHVASQEKKKVPQDAFIEGQVGIGPLPTGFGIEAQLDIHLPGMDRAEAEELVQKAHIVCPYSNATRGNIDVKLNVITD
>NZ_CP013940.1|WP_032968484.1|23646_24849_+|MFS-transporter
MKTSIQPHTRWLTLVGTIVTQFALGSVYTWSLFNGALSQKLDEPVSQVAFSFGLLSLGLALSSSVAGKLQERFGVKRVTIASGVLLGLGLVLTSHASNLMMLWLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFSIGAYGLGSLGFKFIDSHLLASVGLERTFIIWGGMVMVMIIGGALLMKDALNQPARTGNNAGEGDYSLAESMRKPQYWMLALMFLTACMSGLYVIGVAKDIAQGMVRLDAATAANAVTVISIANLTGRLVLGILSDKMPRIRVITLGQMISLVGMAALLFAPLNEMTFFAAIACVAFNFGGTITVYPSLVSDFFGLNNLAKNYGVIYLGFGIGSICGSIIASLFGGFYVTFCVIFALLIVSLAISTTIRQPRREAWEHARA
>NZ_CP013940.1|WP_032983121.1|36028_37714_-|cellulose-biosynthesis-protein-BcsG
MTNHVHSAPLARSGWQNWRGLSGWNYYFLLKFGLLWTGYLNFHPLANLVFMAFLLFPIPNLRLHRLRHWIAIPVGIGLFWHDTWLPGPQSIMSQGSQVAGFSTDYVLDLVTRFINWQMIGAAFVLLVAWMFLSQWVRVTVFVVAIMVWLNVLTVTGPVVSLWPAGNTAPATVTTTGGGAAPTVANAAGTVVAGDIPLQTAPASNQSINDWLNSFYTSESKRQTTFPASLPADAQPFDLLVINICSLAWSDIDATGLMSHPLWSHFDIVFKNFNSGTSYSGPAAIRLLRASCGQPSHKNLYQPAGEQCYLFDNLAKLGFKRHLMMDHNGVFGNFLKEVRENGNMQEPLMDQSGLPVNLLSFDGSPVYDDAAVLNRWQQTVKGEGSSDRSATFFNLLPLHDGNHYPGNSKTADYKARAQKLFDELDAFLTQLEKENRKVMVVVVPEHGAALQGDKMQVSGLRDIPSPSITHVPVGIKFIGMKAPHQGSALEIDQPSSFLAISELVVRMLDGKNFVADNVDWQGLTSNLPQSAPVSENANAVVVQYQGKPWVRLSGGDWVPYPQ
>NZ_CP013940.1|WP_007779144.1|37706_37904_-|cellulose-biosynthesis-protein-BcsF
MMSISDILQLIALCALIFIPLGYALCVGKRRMMKTLRPLLFRPRFVKPAGTLRRRSTIKANLKHD
>NZ_CP013940.1|WP_007779140.1|37900_39475_-|cellulose-biosynthesis-protein-BcsE
MALVFSIGIDSLWDELRHISAGGTAWINCDRYSDAITFVNQTLVAQTPETKVAIITMDAAPESVIAPLPPAPQGPDEVRLFTMPKSQNALHRLHHDLLCSFEPEHYFIVLLCAENAWQGVAPAHIKAWIRKSQSWAQEYHCTLLIINSGAQADQQTSMLMTEYQQLSGLATLRYQGDAWLYDVAFWFNDKGVSARQQLPVTLINDRLSLVPRQEVSLQARSDERRVLSHIAVLEGAPPLSENWTLFEDNDALFNEARQAQAATVIFSLTQNNQIEGLARHVHALRRQRGSALKIIVRENKASVRATDERLLLGCGANMVIPWNAPLSRCLTLIESVQNQQFTRFVPEDVNMLLEAMQPLKMRGYQPWDIFCNAVGALMSNVLIPQDNKGILVALRPVPGIRVEQALTLCRPGRMGDIVTLGENRLVLFLSFCRITDLDTALSHIFPLPISELFSNRMVWHEDKQIAAEIMQMSAMRPEQWAAPLEMTRKASETAALLASTPKTVTRRVPTPVTLLNDTAQERAL
>NZ_CP013940.1|WP_004387626.1|39647_39851_+|hypothetical-protein
MPENDAKAARQPDRGYTFQNDFEALSRVFSLPDLDYTDISQREQLATAIARWPLLAELARRDAGAQG
>NZ_CP013940.1|WP_007779139.1|39847_40576_+|cellulose-synthase-operon-protein-YhjQ
MTVLALQGVRGGVGTTSLTAALGWALYQLGETVLVIDASPDNLLRLSFNIDFDHADGWARALLDDKPWQSTAWRYAPGLDVLPYGALRQAERENDVTPALSAFAQHLQQLKASGQWRWILLDLPCGFDAVTRSLLQVADRTICVVQPDANCHARLHQQALPGGCDLLANFRLISSQIQNDIWQLWLQTQRNLVPVAVHRDEAMMESLAAKQPVGEYRPDSLVAEEIVTLANWCLLHYGSEGA
>NZ_CP013940.1|WP_023897799.1|40572_43191_+|UDP-forming-cellulose-synthase-catalytic-subunit
MISLSALVLAPPVRARLRERYITYRRNGAPPFSAALGCFWLTLAWLFLPLENPRWQAIRAQHALLFPHIHPDRPRPLDTVRYLLQALWLVALRPWRAVGTPRWRPVSKVQVWRERFNLWLETLPQRFSDETHHLNEQKELGHINERLRRVVLGVVVIFSLVLALICVTQPFNPLSQFIFLLLLWGVALLVRRMPGRFSALMLIVLSLTVSCRYIWWRYTSTLNWNDPVSLVCGLVLLVAETYAWVVLVLGYFQVIWPLNRQPVPLPKDLKAWPSVDIFVPTYNEDLHVVKNTIYASLGIDWPKDKLKIWILDDGNREEFRRFAESVGVEYVARPTHEHAKAGNINNALKLAKGDFVSIFDCDHVPTRSFLQLTLGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRGPLDEIGGIAVETVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMVQIFRLDNPLFGKGLKLGQRLCYVNAMLHFLSGVPRLIFLTAPLAFLLLHAYIIYAPALMIALFVLPHMAHASLTNSKIQGKYRHSFWSEIYETVLAWYITRPTMVALFNPHKGKFNVTAKGGLVEEEYVDWVISRPYLMLVLINLLGVLVGIWRYFYGPANEMLTVIVSIVWVFYNLIILGGAVAVSVESKQVRRSHRVEMVMPAAIAREDGHLFSCTVQDYSDGGLGIKVHGGAEWLQGQKVNLLMKRGAQEYVFPAKVVRVFGDEIGLNLDGLTTRQHIDFVQCTFARADTWALWQDSFPEDKPLESMLDILKLGFKGYRHLAEFAPASLKIVFRTLTTLVSWIVSFIPRRPERTALGERALPVMAQQ
>NZ_CP013940.1|WP_071602978.1|43201_45634_+|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB
MKRKLSWMCAVAVGMSLLPGAYGAPEATNDPNATAAPTAPVVAPATEGVMTATPARTEALTPATPPVAGTEPAPATEGAVLGQVMPGVEGAGAPVVQDGAPTRDVTLSFASIAPPPGSMVLKGLNPDGFVEFGMRSDEIISKATLNLTYTPSPSLLPVQSQLKVYLNDELMDVLPVTKEQLGKKTTAQVPIDPLYVSDFNRVRLEFVGHYRDVCENQASNTLWMDIGRNSALNLTFQTLQLQNDLSHFPVPFFDSRDNRPLELPMVFAAAPDLATQQAASIVSSWFGSRSGWRGQRFPVLYNALPTRHAVVFATNDKRPDFLRDLPPAKGPMVRMMSHPQSPWVKLLVIEGRDDKDLLQAAKGIAQGSLLFRGDSVEVGEVKPLLARQPYDAPNWVRTDRAVTFGELKGYEEQLQATGLEPNPISLTLNLPPDLYLLRSNGIDMRLNYRYTSPATRDNSRMDISLNNQFLQSFNLLPKDETNRLLLRLPLLQGLLDGKTEVTLPTLRLGAANQLRFDFAYTNPLPGGTLDNCVTFQTVPNRVVIGDDSTLDFSNYHHFMAMPDLRSFANSGFPFSRMADLSDTLIVMPKQPNPAQLTTLLDTAGTIGAQTGFPAVNLTITNEGGDMQKKDADILVIGALPASLKDEKRIDMLVNATQSWVKTPTRDVTLIDTDNRDRQPQMQTEITSSGPMAAVVGFQSPYHDQRSVVALLADSPRGYELLNDALNDSGKRAAMYGSVSIIRESGVNSLRVGDVYYVGHLPWFDRIWYALSNHPILLAIFAAISVVLLAWVLWRLLRILSRRRLDPGNHE
>NZ_CP013940.1|WP_007779131.1|45640_46756_+|cellulase
MKNLCRWLAAGLLLATVSAHATCGWADWDRFKGGYISEEGRVIDPSDPRKITTSEGQSYALFFALAANDREAFDNILQWTENNLAQGSLKNTLPAWLWGMKGPDEWTVLDTNSASDADLWIAWSLLEAGRLWKEPRYSDTGKALLDRIGKEEVVNVPELGDMLLPGKVSFAEPTLWRFNPSYMPPQLARYFTRYGKPWTTIRDTNLRLLLETAPQGFSPDWVSYEAKKGWVMKPAAPQKPLIGSYDAIRVYLWVGMMNPADEQQAPLLKKLSPMETATIKAGVPPEKVRVTDGKTQGNGPVGFSAALLPFLQNRDIQALQRQRVVDNYPQQDAYFSYVLTLFGQGWDEHRFRFTVDGELQPTWGESCTSSR
>NZ_CP013940.1|WP_023897803.1|46737_50241_+|cellulose-biosynthesis-protein-BcsC
MHKFALSITALALGVALSGQAQAQPDIRQQLLEQVRLGETAKRDDLVRQSLYRLELMNPDDPDFIAAKMRYLLRQGDNAGAQQQFARLGKLAPQSSAYQQARITLALASPEGRQQLQQARLLGTTGHTQEALAAYQKLFNGAPPDGDLAVEYWALVAKDPAQRDEAIRQMQALDARAPGNDQLRTQLALQLFSANRQQEGFSVLEQMAKSGSGRETAADLWYQQIQGMPASDDSVAALERFLQVFSSGETADKAKGLLAEQQTKLADPAYRARMQGIARVEEGQGAKAISELTTAVKANPNDSEALGALAQAYSQQGNRARAVPLLEQALKEDPNSPNSGRWQSLLQVNRYWLLIQQGDAALKANNLALAQQKYQQAATVDNTDSYAVLGLGDVAVAKKDDAAAERYYRQALRMDNTNSNAVRGLANLYRRQSPERAEAFIATLSASQRRSIDDIERSMTNDRLEQQAAALEAEGRFADAAAVQRQRLALDPDSVWITYRLASDLASAGQRRDADTVMGQLAQRKPGDPEQVYAYGLYLSGSDRQRAALSHLNTLARDKWTPNILELSQRLQTNELMETANRLRDSGEEAQAIALLRQQPVSDRIDLTLADWAQQRGDNATARAQYQTVLTRSPASEEARLGLAEVLIAQGDNAAAREQLAALQTPAAGGEPRSPGTQRRIANAEAALGDTARAQQAFAVLAATAKTQPPSQESALVLRDAARFQRQNGQPQQALQTYRDAMVASGITPTRPGDNDAFTRLTRNDASDDWLKRSVRGDAADLYRQQDLNVTLQHDYWGSSGTPGYSDLKANTTMLQVDAPLRDGRLFLRTDAVNMNPGSFSGNSYSETWGTCAETPCSGNAKQRASGVSVAAGWRNDTWDMDIGTTPIGFDVVDVVGGLSYSSDLGPIGYTLNAHRRPISSSMLAFGGQRDAPSNTGTTWGGVRATGGGASLSYDRGEAHGVWASLNADQLTGKNVADNWRVRWMSGYYYKLINENNQRLTIGLNNMVWHYEKDLSGYSLGQGGYYSPQEYVSFAVPVAWRMRTENWSWELGASGSWSHSRTKTERRYPLSGLIPTPVINTQNPALSRYADKDALEEGSSSNGWGYTANALIERRITSNWSVGAAIDIQQAKDYTPSNFSLFIRYSQGGWQGDMDMPPQTLTPYADR
>NZ_CP013940.1|WP_007779123.1|50397_52323_+|sensor-domain-containing-phosphodiesterase
MAMVSAVSVFFLFIFSVVLLFHFVQSHRYHTAMQMESIARSVRQPLSAAILKANIPEAEAILRQIKPAGVISRADVVLPNQFQALRMRFTPERPIPVTLARVFELPVQISLPLYSLERPANPQPLAYLVLQADSWRMYRFIINAISTLLTTFLLLALILSVAITWCINRLILHPLRDITRTLNALDAHELAHHQLAIPRLHKDDEIGMLVRTYNRNQQALAQQLDEARTSGTRFPLTGLPNQALLVALLEQAVAGGGATALLYVACEPLREVDESQREALLLARVDKLRSVLTPRMVLAQISQDDFAIIAHGVKTPEHAVTLTQQLLAALNEPSESDSGAPACAASIGVAMFDGRQSASTLYQSAISAALDARRSGVNQVAFFGESPVSAQESAMQNALARRQYAVWLQPQVDMRNGNIVGAEALLRERQPDGEWSLPVGLIDNIESSGLIVTVGDWVLEEACQILARWQAHGIMLPLSVNVSSLQLLKRDLVQTMLQRLERYAIKPGTLILEMTESQRIDDTEAAIAILRPLREAGVRIALDDFGMGYSSLSQLQKMKALPVDSLKIDKSFIDSLPDDDSVVSAIISMAKKLNLELVAEGIQNEAQRDWLLNAGVTVGQGYLFGKAATPAAFEDGWLAKP

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Crispr_ID: NZ_CP013940_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_2

88562-88674

Orphan

Consensus_repeat	Method
TGTAGGGTGGGTAAGCGCAGCGCACCCACCGTATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_2

>merge|NZ_CP013940|2|88562-88674|CRISPRCasFinder
TGTAGGGTGGGTAAGCGCAGCGCACCCACCGTATCAACCCAACGCCCTACAGCTGGTCTGGATGTGGGGATGTGGTTTTGTAGGGTGGGTAAGCGTAGCGCACCCACCGTATC

>NZ_CP013940|2|2|88562-88674|CRISPRCasFinder
TGTAGGGTGGGTAAGCGCAGCGCACCCACCGTATC	AACCCAACGCCCTACAGCTGGTCTGGATGTGGGGATGTGGTTT
TGTAGGGTGGGTAAGCGTAGCGCACCCACCGTATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_007778960.1\|85644_86628_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270389
NZ_CP013940.1\|WP_032983074.1\|82478_83669_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|235348
NZ_CP013940.1\|WP_023897825.1\|87197_88484_+\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_CP013940.1\|WP_023897826.1\|88679_90896_-\|Zn(II)/Cd(II)/Pb(II)-translocating-P-type-ATPase-ZntA	unknown	unknown	gnl\|CDD\|236827
NZ_CP013940.1\|WP_007778938.1\|91770_92136_+\|DUF2500-domain-containing-protein	unknown	unknown	gnl\|CDD\|378475
NZ_CP013940.1\|WP_023897829.1\|97885_99367_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP013940.1\|WP_007778962.1\|84339_85005_-\|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter	unknown	unknown	gnl\|CDD\|183041
NZ_CP013940.1\|WP_023897821.1\|80752_81262_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236773
NZ_CP013940.1\|WP_007778937.1\|92635_93232_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase	unknown	unknown	gnl\|CDD\|236793
NZ_CP013940.1\|WP_023897827.1\|93421_94999_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP013940.1\|WP_023897820.1\|79042_80458_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP013940.1\|WP_004386827.1\|85211_85457_+\|sulfurtransferase-TusA	unknown	unknown	gnl\|CDD\|178967
NZ_CP013940.1\|WP_004384844.1\|96979_97837_+\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NZ_CP013940.1\|WP_007778959.1\|86676_87186_+\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|225632
NZ_CP013940.1\|WP_007778926.1\|95647_96718_+\|cell-division-protein-FtsX	unknown	unknown	gnl\|CDD\|182910
NZ_CP013940.1\|WP_004384839.1\|92376_92646_-\|DUF1145-family-protein	unknown	unknown	gnl\|CDD\|182831
NZ_CP013940.1\|WP_004384842.1\|95001_95670_+\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|182829
NZ_CP013940.1\|WP_032968459.1\|81266_82331_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|183405
NZ_CP013940.1\|WP_007778941.1\|91003_91630_-\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|226237
NZ_CP013940.1\|WP_007765151.1\|83708_84266_-\|DcrB-family-lipoprotein	unknown	unknown	gnl\|CDD\|183232

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_007778960.1\|85644_86628_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270389	cd13671, PBP2_TRAP_SBP_like_3, Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold. This subfamily includes uncharacterized periplasmic substrate-binding proteins similar to TRAP transport systems such as SiaP (a sialic acid binding virulence factor) and TeaA (an ectoine binding protein). TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.26739e-144
NZ_CP013940.1\|WP_032983074.1\|82478_83669_+\|MFS-transporter	gnl\|CDD\|235348	PRK05122, PRK05122, major facilitator superfamily transporter; Provisional.	4.09303e-173
NZ_CP013940.1\|WP_023897825.1\|87197_88484_+\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	3.57612e-141
NZ_CP013940.1\|WP_023897826.1\|88679_90896_-\|Zn(II)/Cd(II)/Pb(II)-translocating-P-type-ATPase-ZntA	gnl\|CDD\|236827	PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional.	0
NZ_CP013940.1\|WP_007778938.1\|91770_92136_+\|DUF2500-domain-containing-protein	gnl\|CDD\|378475	pfam10694, DUF2500, Protein of unknown function (DUF2500). The members of this family are largely confined to the Gammaproteobacteria. The function is not known.	8.33028e-34
NZ_CP013940.1\|WP_023897829.1\|97885_99367_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.22828e-137
NZ_CP013940.1\|WP_007778962.1\|84339_85005_-\|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter	gnl\|CDD\|183041	PRK11212, PRK11212, 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter.	1.8059e-137
NZ_CP013940.1\|WP_023897821.1\|80752_81262_+\|hypothetical-protein	gnl\|CDD\|236773	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase.	1.45524e-50
NZ_CP013940.1\|WP_007778937.1\|92635_93232_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase	gnl\|CDD\|236793	PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional.	2.06693e-147
NZ_CP013940.1\|WP_023897827.1\|93421_94999_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_CP013940.1\|WP_023897820.1\|79042_80458_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.32352e-92
NZ_CP013940.1\|WP_004386827.1\|85211_85457_+\|sulfurtransferase-TusA	gnl\|CDD\|178967	PRK00299, PRK00299, sulfurtransferase TusA.	2.50382e-55
NZ_CP013940.1\|WP_004384844.1\|96979_97837_+\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	0
NZ_CP013940.1\|WP_007778959.1\|86676_87186_+\|TRAP-transporter-small-permease	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	5.11002e-30
NZ_CP013940.1\|WP_007778926.1\|95647_96718_+\|cell-division-protein-FtsX	gnl\|CDD\|182910	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional.	0
NZ_CP013940.1\|WP_004384839.1\|92376_92646_-\|DUF1145-family-protein	gnl\|CDD\|182831	PRK10910, PRK10910, DUF1145 family protein.	2.80011e-45
NZ_CP013940.1\|WP_004384842.1\|95001_95670_+\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|182829	PRK10908, PRK10908, cell division ATP-binding protein FtsE.	9.09061e-165
NZ_CP013940.1\|WP_032968459.1\|81266_82331_-\|AI-2E-family-transporter	gnl\|CDD\|183405	PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed.	1.13936e-109
NZ_CP013940.1\|WP_007778941.1\|91003_91630_-\|lysoplasmalogenase	gnl\|CDD\|226237	COG3714, COG3714, Predicted membrane protein [Function unknown].	8.95641e-48
NZ_CP013940.1\|WP_007765151.1\|83708_84266_-\|DcrB-family-lipoprotein	gnl\|CDD\|183232	PRK11615, PRK11615, hypothetical protein; Provisional.	1.00457e-108

>NZ_CP013940.1|WP_023897825.1|87197_88484_+|TRAP-transporter-large-permease
MDAFILLATLAVLLALGMPVAFAVGLSAIVGALWIDLPLEALMIQITSGVNKFTLLAIPFFILAGAIMAEGGIARRLVNFAYLFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSVMIPEMEKKGYPREYAAAVTASGSVQAILIPPSHNSVIYSLAAGGTVSIATLFIAGVLPGLLLGLSLMVLCIAFARRRGYPKGERIPLRQALKIFIDALWGLITVVIILGGILTGVFTATESAAVACLWAFFVTMFIYRDYKWSELPKLMFRTVKTVTIVMILIGFAAAFGAVMTYMQLPTRITEFFTTLSDNRYVILMYLNIMLLLIGTLMDMAPIILILTPVLLPVANQLGIDPVHFGMIMMVNLGIGLITPPVGSVLFVASAVSKQNIETVVRAMLPFYGVLLIVLAMVTYIPAISLWLPRVLGMM
>NZ_CP013940.1|WP_007778959.1|86676_87186_+|TRAP-transporter-small-permease
MSRFFLVWMDRLYLLAMMVAGVALLIMTVVIPIGIFSRYVLNRGESWPEPVAIICMVTFTFIGAAVGYRAGSHIAVNMLTDRLPPFAQRVCARVVDLLMLIISLVMFYYSALLCMELWEQPVAEFPVLTSGESYLPLPIGSAVMILFVIERLLWGSQENRPVVLIGNHS
>NZ_CP013940.1|WP_007778960.1|85644_86628_+|TRAP-transporter-substrate-binding-protein
MKKRFIPALAGLCLSTASLLFAPALHAQVIKAADVHPQGYPNVVAVQNMGEKLKQQTNGELEIKTFPGGVLGDEKQMIEQAQMGAIDMIRVSMAPVAAILPEIEVFTLPYVFRDEDHMHKVIDGDIGKQIGDKLTSNPKSRLVFLGWMDSGTRNLITKNPVVKPDDLKGMKIRVQGSPVAIGTLKAMGANAVAMGVSEVYSGLQTGVIDGAENNPPTYIAHNYLPVAKHYTLSGHFIIPEMLLYSKVKWDKLKPEQQQKILTLAREAQMEQRELWNAYNKQALDKMKAGGVQFHEIDKAYFVNATAPVRDQYGAKHQDLMKAIADVK
>NZ_CP013940.1|WP_004386827.1|85211_85457_+|sulfurtransferase-TusA
MTDLFANPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIVADDPATTRDIPGFCRFMEHELVASQTETLPYRYLLRKNQ
>NZ_CP013940.1|WP_007778962.1|84339_85005_-|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter
MTSFTPGQRRNALVWLSLFHLLVITSSNYLVQLPVSIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAVMMPALLVSYVISSLFYMGSWQGFGALSHFNLFVARIATASFMAYALGQILDVHVFNRLRQSPHWWLAPGASLLLGNVSDTLSFFFIAFWRSPDPFMAEHWMEIALVDYTFKVLISLVFFLPMYGVLLNMLLKKLADKSDFHVLQRG
>NZ_CP013940.1|WP_007765151.1|83708_84266_-|DcrB-family-lipoprotein
MRNLVKYVGIGLLVMGLAACDNKDSNAPASAGASQSEASGQPVSLLDGKLSFSLPADMTDQSGKVGTQANNMHVYSDQTGQKAVIVIVGEKSQESLEVLAKRLEDQQRARDPQLQVVTNKAIEIKGQKMQQLDTVISAKGQTAYSSVVLGNVDDKLLTLQITLPADNQQQAQSTAENIINTIVVK
>NZ_CP013940.1|WP_032983074.1|82478_83669_+|MFS-transporter
MPDVSADPALSGLRLNLKIVSIVIFNFATFLTIGLPLAVLPGYVHDVMGFSPFWAGLVISLQYIATLISRPHAGRYADLWGPKTVVIVGMSGCLLSGASYFLAWWGGGAPLLSLALLCLGRVVLGFGQSCAGTGSTLWGVGVVGSTHIGKVISWNGVVTYGAMAVGAPLGALLYRHGGLPLVAGVIMGVALLGIVLALPRPAVKASKGKPLPFRAVLGKVWPFGMALALTTSGFGVIATFITLFYQAKGWDGAAFALTLFSGAFVGTRLLFPNAINRLGGINVTLICGVVETVGLLMVGLAVEPWMAKAGTFLAGAGFSLVFPALGVVAVKAVPQSNQGAALATYTLFMDLSLGITGPAAGVLMAWAGVPAIYLAAAGLVLLAILLSVQLKKRPAP
>NZ_CP013940.1|WP_032968459.1|81266_82331_-|AI-2E-family-transporter
MIGPQRPQPQQDKVGLHMLQKLAALVIILAGIHAAADMIVPLLLALFLAIVLNPLVTWFMRRGFRRPVAITIVVFVMLIGLTLLLGVLAASFNEFVALMPKYNKELTRKLLHLQEMVPFMHLHLSPERMLQRMDSDKMMTFATTLMTQLSGAMASVVLLVMTVVFMLFEVRHVPYKLRFALSNPQLHIAGLHRALKGVSHYLALKTLISLWTGVIIWLGLTLLDIQFALMWGVLGFLLNYIPNIGAVLSAIPPMIQALLFNGVYEVVMVGLLFSLVHMILGNIVEPRMMGHRLGMSTMVVFLSLLFWGWLLGPVGMLLSVPLTSVCKIWMETTHGGSKLAVLLGPGRPKTRLPG
>NZ_CP013940.1|WP_023897821.1|80752_81262_+|hypothetical-protein
MRLLMMFFYFTSLLAAPAFSAALPASWHYYDSSQDISYRFKHDAPPETLLKSALLNRYISWKGTRYHFGGTTHRGVDCSALMQHLFAESASVSLPRTTSQQLKKGKAVRKTALQPGDLVFFSTGPRQRHVGVYIGDNQFIHASKEKGVTISSLTNDYWRARYLAARRVV
>NZ_CP013940.1|WP_023897820.1|79042_80458_-|glutamine-synthetase
MFSFALTPWFKPLSPTAAPSGQEPIMFSTLLNTWMLAGTAHGTPVSFRQEADAYLREYPHTRHVDIYLHDLNGCRRGKRISADSLRSLAQGCYFPLSVYAMDMEGHVVESALAQREPDRLCLPVSGTLRPCASDPAHHAQLLLAMQEPDGAGCALEPRVVLERLLAQFHARGIYPVIAPEVEFYLQAVDGAPPTSRCFDIDMPGRDSALLEAMETEARRQGLPLCGIVAEAEAGQFELNFNHTPRVVEMCDRVLAARRLVHQVAEKKGYLASFMAKPRAELAGSGLHVHISLNDAQGNNLFAGDTDTPNVMMRRSLSGLLALMPASVALVTPGANAFRRLRKSLNEPLFSSWGYNDRSAALRLPCADPARQRIEYRLASADANPYLVAAAALAGILYGLDHPLTLPEAGASADLPALPLFWPDALARFQEAEWLRQQLGAPFSDAWLACKCQELARFESEVTDAEKRAHHH
>NZ_CP013940.1|WP_023897826.1|88679_90896_-|Zn(II)/Cd(II)/Pb(II)-translocating-P-type-ATPase-ZntA
MRTPSEKPHATPQFAKMTPISAPQKPAISKAACCESDACENPPPVQEVAGALCWQVAGMDCAACARKVENAVRQVPEVRQVQVLFATEKLVVDAPASQRDAIEQAVRAAGYTLREANTAAPAAPSGLRENLPIIAIAIFMALSWALEQVYPLAGRIAFTITTLVGLFPVARQAWRLIRSGNPFAIETLMSVAATGALIIGASEEAAMVLLLFLVGERLEGWAANRARSGVSALVALRPETAVRLRGDARETVAISDLQPGDVIEVAAGGRLPADGKLLAAAASFDESALTGESLPVERQPGEKVPAGATSVDRLVSFEVTSRPGDSAIDRILHLIEEAESKRAPIERFIDRFSRIYTPVIMAAALLTALIPPLLFAAPWLPWIYKALALLLIGCPCALVISTPAAITSGLAAATRFGALIKGGAALEALGRVEQIAFDKTGTLTAGTPQVTAVDPVDGLEAEALLAYAAAVEQGSTHPLAQAVVREANARGVATLRAGAQRTLAGAGVEAQVEGRLLRISAPDKVTIELPADWQARIREQEAQGQTVIVVTASDRLLGTLALRDTQRADARDAVEKLRALGVGSVMLTGDNPRAAAAIAAELGMEYRAGLLPADKVAAVNELNARTPLAVVGDGINDAPAMKAATIGIAMGSGTDVALEAADAALTHNRLAALPEMIALARDTHRNIRQNIAIALGLKAVFLVTTLLGLTGLWLAVLADTGATVLVTANALRLLRKRG
>NZ_CP013940.1|WP_007778941.1|91003_91630_-|lysoplasmalogenase
MLWSFIAVFLSGWLYVDASYRGATWQRWIFKPLTLLLLLLLGWQAPLASPTGYLVLAGLVATLAGDALTLLPRQQLLYAFGAFFLSHLLYTVWFASQMTLSFFWPLPLALLVIGAALIATIWTRLGDLRWPICTYIGMTLVMVWLAGELYFFRPTDTSFSGFVGAVLLLLNAVVWFGSHYRKRFTADSAIAAACYFAGHFMIVRSLYL
>NZ_CP013940.1|WP_007778938.1|91770_92136_+|DUF2500-domain-containing-protein
MSKPPLFFIIIIALIVAAASFRYVQQRREKTENDAAPVTQQNVVVVSKREKPVNGRRSREQQVAPPAQTVRYEATFRPQEGGAEMRFRLDEAHYHQLTVGDEGQLVYQGTRFLEFVPAPAR
>NZ_CP013940.1|WP_004384839.1|92376_92646_-|DUF1145-family-protein
MLINLGRLLMLGVWGFLLLNLIQPFPRPLNIFVNVALFFMIIMHILQLSLLRATQPKDAPPLSRFQQARIFIFGVFELIAWQKNQKKPR
>NZ_CP013940.1|WP_007778937.1|92635_93232_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase
MKKPTSSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPYLVGARCLDCFAGSGALGLEALSRYAADATLLEMERGVAQQLQKNLATLKSSAAKVVNTNTLNFLSQHGEPHDIVFVDPPFRKGLLEETLNLLETRGWLAPQALIYVESEVENGLPPVPASWQLHREKVAGQVAYRLYLRESQGEQNAD
>NZ_CP013940.1|WP_023897827.1|93421_94999_+|signal-recognition-particle-docking-protein-FtsY
MAKEKKRGFFSWLGFGQKEQAETEAEQQEQQATEQPAATEARVEPDSQTQTAAQETTHSLAESEKFADDVVAVSESVVHEEKEAAQPETIETPVQPEPEPEAVKPTAAQAEEWLPEQEENRAPVALAPEFVAEPQPEAAPDTIVEEDVIEETAAIEEPVVEEAAVEPAVEAPHDEDETAQDAPISEEELIALAADPEAALEAEPEEEETAPVAEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVDTTRKIIANLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEALFARED
>NZ_CP013940.1|WP_004384842.1|95001_95670_+|cell-division-ATP-binding-protein-FtsE
MIRFEHVSKAYLGGRQALQGVTFHLRPGEMSFLTGHSGAGKSTLLKLICGIERPSAGKIWFGGHEISRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGEDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDTGLISRRSYPVLTLSEGHLHGGRVGE
>NZ_CP013940.1|WP_007778926.1|95647_96718_+|cell-division-protein-FtsX
MEAVLVNKRDALNEIRRFSNKLDNFRKQRSSGETGRPVQKRNKGSNTKGKSRRGGINEQVRYAWQGALADLKSKPLATFLTVMVIAISLTLPSVCYMVYKNVSEAATQYYPSPQITVYLDKTLDDSAAQQVVGQLQAEPGVAKVNYLSRDEALGEFRNWSGFGGALDMLEENPLPAVVVVEPKLDFQSSEALNTLRDRVAKLQGVDEVRMDDSWFARLSALTGLVGRVAAMIGVLMVAAVFLVIGNSVRLSIFARRDTINVQKLIGATDGFILRPFLYGGALLGFTGALLSLILSEILVMRLSAAVTDVAKVFGTTFEISGLSFDECLLLLLVCSMIGWAAAWLATVQHLRHFTPE
>NZ_CP013940.1|WP_004384844.1|96979_97837_+|RNA-polymerase-sigma-factor-RpoH
MTKEMQTLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYQGDLEAAKKLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVSSKDVREMESRMAAQDMTFDMSPDDDAGDSQPMAPVLFLQDKSSNFADGIEDDNWEEHAADKLTDAMQGLDERSQQIIRARWLDEDNKSTLQELANRYGVSAERVRQLEKNAMKKLRAAIEA
>NZ_CP013940.1|WP_023897829.1|97885_99367_-|PLP-dependent-aminotransferase-family-protein
MSDLLLLRLGEQRDERLHKRLYNALRLTILDGSLPAQSRLPASRDLAQQLGLSRNTVLTVYEQLLAEGYVTSRAGSGTFVAGMLPDSLLSAPPVAQGQHDRVAHAGFSSRGKTLLGQVSASPKQWGAFIPGVPDVHAFPHQLFSKIQARISRRPSPQRLTYSCQGGTPELQRALVDYLRVSRSVHCSADQVLITEGIHQAIDLVARMLCDRGDTAWVEEPSYWGIRHVLQMNEVNITPVMVDRAGMVPPESAGTPPRLIFVTPSHQYPLGAVMSLERRQRLLTLARQTGSWIVEDDYDSEFRFSGQPIPALQGLVADPPVIYIGTFSKTLYPGLRIGYVVLPRALAYEMKTAHAELYRGGHSIIQAALAEFIEAGHYSAHIRRMRLLYGRRRACLTTLITRYLGPEALSDFSDNAGLHLVLNLPDDADDVEIARLANARDILVRPLSRYYLTENRRRGLLMGFACVAEEKMEGAFKALLACIEAAYPALLRRA

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Crispr_ID: NZ_CP013940_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_3

110579-110695

Orphan

Consensus_repeat	Method
CTACAAAGCGCCAGAAATCGTACCGCTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_3

>merge|NZ_CP013940|3|110579-110695|CRISPRCasFinder
CTACAAAGCGCCAGAAATCGTACCGCTGGTGGTGGGTTGGCGCGGTGGGTGCCGTTTCGAACGGCGGGTGCGCTTCGCTTACCCGCTCTACAAAGCACCAGAAATCGTACCGCTGGT

>NZ_CP013940|3|3|110579-110695|CRISPRCasFinder
CTACAAAGCGCCAGAAATCGTACCGCTGGT	GGTGGGTTGGCGCGGTGGGTGCCGTTTCGAACGGCGGGTGCGCTTCGCTTACCCGCT
CTACAAAGCACCAGAAATCGTACCGCTGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_023897837.1\|117727_118768_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182305
NZ_CP013940.1\|WP_080630093.1\|114958_116722_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|181992
NZ_CP013940.1\|WP_007797171.1\|106176_107457_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	unknown	unknown	gnl\|CDD\|236896
NZ_CP013940.1\|WP_007778888.1\|116921_117419_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|182263
NZ_CP013940.1\|WP_015387162.1\|99497_100763_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|180690
NZ_CP013940.1\|WP_004384848.1\|102635_103739_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivJ	unknown	unknown	gnl\|CDD\|237959
NZ_CP013940.1\|WP_007778908.1\|107453_108221_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG	unknown	unknown	gnl\|CDD\|183080
NZ_CP013940.1\|WP_012126351.1\|101143_102385_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223884
NZ_CP013940.1\|WP_029464278.1\|109194_110514_+\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	unknown	unknown	gnl\|CDD\|182876
NZ_CP013940.1\|WP_004388012.1\|119689_120685_+\|gluconate-operon-transcriptional-repressor-GntR	unknown	unknown	gnl\|CDD\|184949
NZ_CP013940.1\|WP_004388011.1\|118889_119585_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP013940.1\|WP_007778914.1\|104946_105186_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237959
NZ_CP013940.1\|WP_007778898.1\|112555_113629_+\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP013940.1\|WP_007778900.1\|111708_112554_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	unknown	unknown	gnl\|CDD\|182875
NZ_CP013940.1\|WP_007778893.1\|114362_114830_-\|DUF2756-family-protein	unknown	unknown	gnl\|CDD\|182398
NZ_CP013940.1\|WP_004384849.1\|104131_104524_-\|aspartate-1-decarboxylase-autocleavage-activator-PanM	unknown	unknown	gnl\|CDD\|380212
NZ_CP013940.1\|WP_007778906.1\|108222_108936_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF	unknown	unknown	gnl\|CDD\|183231
NZ_CP013940.1\|WP_007778896.1\|113625_114366_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236524
NZ_CP013940.1\|WP_004384851.1\|105253_106180_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	unknown	unknown	gnl\|CDD\|182689
NZ_CP013940.1\|WP_023897835.1\|110824_111712_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	unknown	unknown	gnl\|CDD\|182550

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_023897837.1\|117727_118768_+\|oxidoreductase	gnl\|CDD\|182305	PRK10206, PRK10206, putative oxidoreductase; Provisional.	0
NZ_CP013940.1\|WP_080630093.1\|114958_116722_+\|gamma-glutamyltransferase	gnl\|CDD\|181992	PRK09615, ggt, gamma-glutamyltranspeptidase; Reviewed.	0
NZ_CP013940.1\|WP_007797171.1\|106176_107457_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	0
NZ_CP013940.1\|WP_007778888.1\|116921_117419_-\|N-acetyltransferase	gnl\|CDD\|182263	PRK10140, PRK10140, N-acetyltransferase.	2.73892e-91
NZ_CP013940.1\|WP_015387162.1\|99497_100763_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|180690	PRK06777, PRK06777, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP013940.1\|WP_004384848.1\|102635_103739_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivJ	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	0
NZ_CP013940.1\|WP_007778908.1\|107453_108221_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG	gnl\|CDD\|183080	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.	0
NZ_CP013940.1\|WP_012126351.1\|101143_102385_+\|amino-acid-permease	gnl\|CDD\|223884	COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism].	8.12076e-56
NZ_CP013940.1\|WP_029464278.1\|109194_110514_+\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	gnl\|CDD\|182876	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB.	0
NZ_CP013940.1\|WP_004388012.1\|119689_120685_+\|gluconate-operon-transcriptional-repressor-GntR	gnl\|CDD\|184949	PRK14987, PRK14987, HTH-type transcriptional regulator GntR.	0
NZ_CP013940.1\|WP_004388011.1\|118889_119585_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	3.03213e-82
NZ_CP013940.1\|WP_007778914.1\|104946_105186_+\|hypothetical-protein	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	1.01186e-07
NZ_CP013940.1\|WP_007778898.1\|112555_113629_+\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP013940.1\|WP_007778900.1\|111708_112554_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	gnl\|CDD\|182875	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE.	0
NZ_CP013940.1\|WP_007778893.1\|114362_114830_-\|DUF2756-family-protein	gnl\|CDD\|182398	PRK10350, PRK10350, DUF2756 family protein.	1.06384e-28
NZ_CP013940.1\|WP_004384849.1\|104131_104524_-\|aspartate-1-decarboxylase-autocleavage-activator-PanM	gnl\|CDD\|380212	NF033213, matur_PanM, aspartate 1-decarboxylase autocleavage activator PanM. Members of this family, called PanM (or PanZ), although related to the GNAT family N-acetyltransferases, have a different function. Then enzyme PanD, aspartate 1-decarboxylase, has an active site modified Ser residue, created by cleavage of a precursor form. PanM promotes the maturation of the CoA biosynthesis enzyme PanD, but also inhibits its activity in the presence of CoA. Figure 6 in PMID:26276430 identifies residues considered critical to interaction with PanD; seed alignment sequences and cutoff scores were chosen to separate proposed PanM from functionally distinct relatives.	7.57187e-78
NZ_CP013940.1\|WP_007778906.1\|108222_108936_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF	gnl\|CDD\|183231	PRK11614, livF, high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF.	2.90137e-170
NZ_CP013940.1\|WP_007778896.1\|113625_114366_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236524	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional.	1.91453e-165
NZ_CP013940.1\|WP_004384851.1\|105253_106180_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	0
NZ_CP013940.1\|WP_023897835.1\|110824_111712_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	gnl\|CDD\|182550	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA.	0

>NZ_CP013940.1|WP_029464278.1|109194_110514_+|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB
MTASLRRTAICVALGWALSSQAMAATTIPFWHSMEGELGKEVNSLAQRFNEAHPEYKIEPVYKGNYEQSLAAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYEVFNDAGIKFDESQFVPTVAGYYTDAKSGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLAAYTAKLKAAGMKCGYASGWQGWIQIENFSAWHGLPVATKNNGFDGADAVLEFNKPEQVKHIALLEELNKKGDFSYFGRKDESTEKFYNGDCAITTASSGSLADIRHYAKFNYGVGMMPYDADVKGAPQNAIIGGASLWVMQGKNKEMYKGVAEFLNFLAQPEIAAEWHQKTGYLPITKAAYDLTRQQGFYEKNPGADIATRQMLNKPPLPFTKGLRLGNMPQIRTVVDEELESVWTGKKTPQQALDSAVERGNQLLRRFEQSTKS
>NZ_CP013940.1|WP_007778906.1|108222_108936_+|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF
MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFADRAQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAYLGG
>NZ_CP013940.1|WP_007778908.1|107453_108221_+|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG
MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKSGLFSGLLKTPAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIRAYLGEA
>NZ_CP013940.1|WP_007797171.1|106176_107457_+|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM
MKPMHFVAALLAAAMFFLLAGIFMGVQLELDGTRLVVDTADSIRWEWIAIGTGVVFLFQLLRPLFQKGLKNVSGPKFILPAIDGSTVKQKLFLVALLLVAVAWPFMVSRGTVDIATLTMIYVILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPLAGLVAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTFFGLEFSRTAREGGWDTFSNFFGVKYDPSDRVIWLYLVALLLVVFSLFVINRLLRMPLGRAWEALREDEIACRSLGLNPTRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDLNEYSMLVLGGLMVLMMIWRPQGLLPMTRPQLKLKNGVSSKGEQA
>NZ_CP013940.1|WP_004384851.1|105253_106180_+|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH
MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGIDASWLLVGAAFIGAIVVSSAYGWSIERVAYRPVRSSKRLIALISAIGMSIFLQNYVSLTQGSRDVALPSLFNGQWTIGSSENFAASITTMQLVIWVVTFIAMLALTLFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGVTESLCSAYLSTEYKDVVSFALLIGVLLVMPTGILGRPEVEKV
>NZ_CP013940.1|WP_007778914.1|104946_105186_+|hypothetical-protein
MNSNAKRWLAGMVALALSQAVNAMTVNTAAGHGVNSAVPAANVVTGPLNWDEKSDLKGFVSEVFERHTNGSLTVLHNES
>NZ_CP013940.1|WP_004384849.1|104131_104524_-|aspartate-1-decarboxylase-autocleavage-activator-PanM
MKLTILRLHTLSEQDKIDLAKIWPEYPSESLRLDENHRIYAARFNDRLLGAVRVTLRGTEGAMDSLRVREVTRRRGVGHYLIEETIRDNPSMTEWWVMDIGVEDYNVMNAFMQTLGFAAQQDGWVKRLEP
>NZ_CP013940.1|WP_004384848.1|102635_103739_+|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivJ
MKMKGKALLAGAIALAMSSMAMAEDIKIAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLVITKYDDACDPKQAVAVANKVVNDGVKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILDKVKPKRIAIIHDKQQYGEGLARAVQDGLKKGGANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARSAGLKTQFMGPEGVANVSLSNIAGDSAEGMLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLAAGLNQSDDPAAIAKYLKANSVDTVMGPLSWDSKGDLKGFEFGVFTWHANGTATDAK
>NZ_CP013940.1|WP_012126351.1|101143_102385_+|amino-acid-permease
MSENTTSASLWASRERAASSPKSLSFVEGVAMIVGTNIGAGVLSIAYASSKAGFMPLLFWLALVGVLTTITMLYVAEATLRTRAHLQLSGLAGRYVGRIGAWLMFASVCVNSVGALTAYMTGSGKLLSSLIGVSPAIGSLIFFIPAAGILWLGLKAIGRGEKFISIGMVVMIAVLVVATLLHESTQMRWLLDGDWRYMVPVFNVTAFCFAAQYIVPEMARGFADKPEKLPKAIIVGMVITFTLLALVPLSVIALSGLDNISEVATISWGRALGEWAFFSANIFALCAMLTSYWGLGGSFLTNIFDKFRLGDDAQPLKRLGVLAVVALPPFALAYSGLVSFVNALYFAGVFSGVILSIMPILILRGARRRGEITPRWQCSWSTHPLIQGLIVLLYVASAIYAVLSAFGYLPAGW
>NZ_CP013940.1|WP_015387162.1|99497_100763_+|4-aminobutyrate--2-oxoglutarate-transaminase
MKNSELNQRRQSATPRGVGVMCGFYAEKADNATLWDVEGNEIIDFAAGIAVLNTGHRHPRVVEAIENQLRAFTHTAYQIVPYESYVALAERINACAPIDGPAKTAFFTTGAEAVENAVKIARAYTRRPGLITFGGGFHGRTFMTMALTGKVAPYKIGFGPFPGSVFHAQYPNALHGVSVDDAMASLERIFKADIAPDQVAAIVLEPVQGEGGFNVAPPAFMEALRALCDEHGILLIADEVQSGFARTGKLFAMEHYGVKPDLLTMAKSLAGGMPLSGVVGRAEVMDAPAPGGLGGTYAGNPLAVAAAHAVLDVIEQENLCQRANELGQHLQEVLNQARTYCPAIAEVRGQGSMVAVEFNDPQTGKPSPEFTQQVLTRAREEGLLLLSCGVYGNVIRFLYPLTIPDAQFSKALEILSRALGR
>NZ_CP013940.1|WP_023897835.1|110824_111712_+|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA
MSSSRPVFRSGWLPYALLAPQLIITVIFFIWPAGEALWYSVQSIDPFGLSSQFVGLANFTQLFHDSYYLDSFWTTIKFSALVTVSGLLISLFFAALVDYVVRGSRFYQTLMLLPYAVAPAIAAVLWIFLFNPGRGLITHVLEQMGYYWNHSQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPVRRFFKLSLPLIAPVSFFLLVVNLVYAFFDTFPVIDAATAGGPVQATTTLIYKIYREGFAGLDLSTSAAQSVVLMVLVIILTVVQFRYVESKVRYQ
>NZ_CP013940.1|WP_007778900.1|111708_112554_+|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE
MIENRPGLTIFSHTLLILGIAAILFPLYVAFVAATLDNQAVFATPMTLIPGTHLWENLKDIWLNGVGANSAPFWLMLLNSFIMAFSITVGKIAVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMMDSYTGLTLPLMASATATFLFRQFFMTLPDELMEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIISDPSLGTAVAGIKGMISVGEGSTQWNQVMAAMLLTLIPPVVIVLVMQRAFVRGLVDSEK
>NZ_CP013940.1|WP_007778898.1|112555_113629_+|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC
MAGLKLQAVTKSWDNGKTQVIQPLTMDVADGEFIVMVGPSGCGKSTLLRMVAGLERVSSGDIWIDRQRVTEMEPKERGIAMVFQNYALYPHMNVEENMAWGLKIRGMGKAHIAERVKEAARILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQQLHRRLRTTSLYVTHDQVEAMTLAQRVMVMNKGVAEQTGTPVEVYEKPASRFVASFIGSPAMNLLEGRVNAEGTHFDVDGGLSLPLGRLHKTLAGRKVTLGIRPEHIALSSQAAGGVPLPLDTLEMLGADNLAHGRWGSQKVVARLAHQERPQPGSQLWLHLPENHLHFFDGETGQRL
>NZ_CP013940.1|WP_007778896.1|113625_114366_+|glycerophosphodiester-phosphodiesterase
MSNWPYPPIVAHRGGGRLAPENTLAAIETGARLGHAMIEFDVKLTRDGQIFLLHDDTLERTSNGWGVAGELNWDELLKVDAGSWFSGAFKGEKLALLSDVAQRCREHRMMANIEIKPTTGTDADTGRVVALAARALWRDMTAPLLSSFSIEALEAAQQAAPELPRGLLLDEWRDDWQALTTRLGCVSIHLNHKLLDQARVMQLKDAGLRILVYTVNSPRRALELLAWGVDCICTDAIDEIGPDFRA
>NZ_CP013940.1|WP_007778893.1|114362_114830_-|DUF2756-family-protein
MKRYLLIAAALPLAALAQPINVINNPNQPGYVNPSQQRLQTQMQSQQLQQKGMLNQQIQTQSRLQQQQLQTQMNNNVERIQQNQPGMLNPQREQVLPNTNGGMLNRSSGSSQHMLNSNGATLNSTQQTHMIEPRQNGDMLRQNGTTLNTQGSVAP
>NZ_CP013940.1|WP_080630093.1|114958_116722_+|gamma-glutamyltransferase
MMQWKTVRQSVIAALAVTFCLTAGAAPSPVAAPAPAPVSYGVEEDVFHPVRAEHGMVASVDAAATQVGVDVLKQGGNAVDAAVAVGFALAVTHPQAGNLGGGGFMMLRTKDGKVTAIDFREMAPEKATRDMFLDAQGNADSKKSLTSHLASGTPGSVAGFALALQKYGTMPLDKVIQPAIALARDGFTVNDALAIDLKTYGVETLPNHPASKAIFWKQDGNPYQKGDKLVQANLARSLELIAKDGPDAFYKGPIADQIADEMAKNGGLITKADLANYKAVERTPVSGDYRGYQVYSMPPPSSGGIHIVQILNILENFDLHKYGFGSADAMQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTSKAYAKSLAQQIDINKARPSKEIKPGNLAPYESNQTTHFSVVDKDGNAVAVTYTLNTTFGSGIVAGDTGILMNNQMDDFSAKPGTPNVYGLVGGDANAVGPKKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNTIDYGMNVAEATNAPRFHHQWLPDELRVEKGFSPDTLKLLREKGQNVAVKEAMGSTQSIMIGPDGALYGASDPRSVDDLTAGY
>NZ_CP013940.1|WP_007778888.1|116921_117419_-|N-acetyltransferase
MNEIVVRHAEAEDAQALQQIHMMSEVIYNTLQIPHPSLAMWRERLGAPQPGRRQLVACMDGEVVGHLALTVEQNPRRSHVATFGMSVHPGCRNRGVASALMREMVNLCDNWLRIERIELTVFVDNAPALAVYRKFGFETEGTGKRYGLRNGEYVDAYFMARMKAG
>NZ_CP013940.1|WP_023897837.1|117727_118768_+|oxidoreductase
MTINCAFIGFGKSTTRYHLPYVLHRKETFHVAHIFRRHPKPELESHPRYQHIHFTSDLDDILNDASVKLVVICTHADSHFDYAKRALEAGKNVLVEKPFTTSVADARLLLDLAKSKGLVVTPYQNRRFDACFLTTRKVIESGKLGEIVEIESHFDYYRPEAETKPGLPEDGMFFGLGVHTMDQIISLFGRPDHVSYDIRSLRNKANPDDTFEAQLFYGDLKAIVKTSHYVKIDYPKFIVHGKKGSFIKYGIDQQETSLKAGIMPGEPGFAADESIGHLEYVNAQGETVREEIKPEVGDYGRVYDALYDTLVNGAPNYVRESDVLTNLEILERGFEQASPATVTLAK
>NZ_CP013940.1|WP_004388011.1|118889_119585_+|pirin-family-protein
MIYLRKAQDRGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIDAGQGFGTHPHKDMEILTYVLEGAVEHQDSMGNKEQVPAGEFQIMSAGTGVRHSEYNPSATERLRLYQIWIIPSENGIEPRYEQRRFDAAQGRQLVLSPDARDGSLKVHQDMELSRWALLNGEDGEYAPAAGRRVWIQVVKGDVTINGTRATTSDGLAIWDEATLAIHADSDSEILLFDLPPV
>NZ_CP013940.1|WP_004388012.1|119689_120685_+|gluconate-operon-transcriptional-repressor-GntR
MKKRRPVLQDVADRVGVTKMTISRYLRNPEQVSLALRSKIAAALDELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVIDAHGYQTMLAHYGYKPELEEERLESMLSWNIDGLILTERNHTPRTLKMIEVAGIPVVELMDSVSPCLDIAVGFDNFDAARQMTAAIIARGHRHVAYLGARLDERTIMKQKGYEQAMLDAGLTPYSVMVEHSSSFSTGSELLRQARREYPQLDSIFCTNDDLAIGAAFECQRLGLRIPEDMAIAGFHGHDIGQVMEPQLASVLTPRERMGRIGAERLLARIRGETVTPQMLDLGFTLSPGGSI

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Crispr_ID: NZ_CP013940_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_4

256434-256555

Orphan

Consensus_repeat	Method
GCGTCGCTTACCCGCCCTACAACCGCTTTGATCCTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_4

>merge|NZ_CP013940|4|256434-256555|CRISPRCasFinder
GCGTCGCTTACCCGCCCTACAACCGCTTTGATCCTGTCCAGGGTGGATAAGCGTAGCGCATCCACCGTTTGCCAGCGGCGGGTGTGCGTCGCTTACCCGCCCTGCAACCGCTTTGATCCTGT

>NZ_CP013940|4|4|256434-256555|CRISPRCasFinder
GCGTCGCTTACCCGCCCTACAACCGCTTTGATCCTGT	CCAGGGTGGATAAGCGTAGCGCATCCACCGTTTGCCAGCGGCGGGTGT
GCGTCGCTTACCCGCCCTGCAACCGCTTTGATCCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_023897883.1\|253446_255045_+\|malate-synthase-A	unknown	unknown	gnl\|CDD\|236432
NZ_CP013940.1\|WP_007778648.1\|245613_245871_+\|DUF1488-domain-containing-protein	unknown	unknown	gnl\|CDD\|377825
NZ_CP013940.1\|WP_007778618.1\|265114_265390_-\|putative-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|188241
NZ_CP013940.1\|WP_007778660.1\|242094_243207_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|236747
NZ_CP013940.1\|WP_032970996.1\|243675_244233_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223625
NZ_CP013940.1\|WP_007778613.1\|265904_266177_-\|DUF3811-domain-containing-protein	unknown	unknown	gnl\|CDD\|170492
NZ_CP013940.1\|WP_007778650.1\|244798_245617_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP013940.1\|WP_004388634.1\|243178_243652_+\|DUF494-domain-containing-protein	unknown	unknown	gnl\|CDD\|235125
NZ_CP013940.1\|WP_007778653.1\|244222_244795_+\|L-threonylcarbamoyladenylate-synthase-type-1-TsaC	unknown	unknown	gnl\|CDD\|182603
NZ_CP013940.1\|WP_032968443.1\|265394_265673_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|162974
NZ_CP013940.1\|WP_007778610.1\|267365_268958_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226997
NZ_CP013940.1\|WP_023897885.1\|259517_263201_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NZ_CP013940.1\|WP_007778636.1\|252242_253172_+\|homoserine-O-succinyltransferase	unknown	unknown	gnl\|CDD\|235433
NZ_CP013940.1\|WP_007778643.1\|245846_246404_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|223735
NZ_CP013940.1\|WP_004387513.1\|258483_259320_-\|glyoxylate-bypass-operon-transcriptional-repressor-IclR	unknown	unknown	gnl\|CDD\|183206
NZ_CP013940.1\|WP_023897884.1\|256649_258440_+\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	unknown	unknown	gnl\|CDD\|226945
NZ_CP013940.1\|WP_004387518.1\|266267_267203_-\|ketopantoate/pantoate/pantothenate-transporter-PanS	unknown	unknown	gnl\|CDD\|223462
NZ_CP013940.1\|WP_007778619.1\|263466_265098_+\|Na/Pi-cotransporter-family-protein	unknown	unknown	gnl\|CDD\|224202
NZ_CP013940.1\|WP_007778632.1\|255079_256387_+\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
NZ_CP013940.1\|WP_014727948.1\|269064_269319_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_023897883.1\|253446_255045_+\|malate-synthase-A	gnl\|CDD\|236432	PRK09255, PRK09255, malate synthase; Validated.	0
NZ_CP013940.1\|WP_007778648.1\|245613_245871_+\|DUF1488-domain-containing-protein	gnl\|CDD\|377825	pfam07369, DUF1488, Protein of unknown function (DUF1488). This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.	8.24464e-30
NZ_CP013940.1\|WP_007778618.1\|265114_265390_-\|putative-addiction-module-antidote-protein	gnl\|CDD\|188241	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the downstream member of a gene pair. It is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module. [Mobile and extrachromosomal element functions, Other].	3.19162e-36
NZ_CP013940.1\|WP_007778660.1\|242094_243207_+\|DNA-protecting-protein-DprA	gnl\|CDD\|236747	PRK10736, PRK10736, DNA-protecting protein DprA.	0
NZ_CP013940.1\|WP_032970996.1\|243675_244233_+\|hypothetical-protein	gnl\|CDD\|223625	COG0551, TopA, Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair].	1.19591e-31
NZ_CP013940.1\|WP_007778613.1\|265904_266177_-\|DUF3811-domain-containing-protein	gnl\|CDD\|170492	PRK10515, PRK10515, hypothetical protein; Provisional.	2.88793e-40
NZ_CP013940.1\|WP_007778650.1\|244798_245617_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	6.56309e-130
NZ_CP013940.1\|WP_004388634.1\|243178_243652_+\|DUF494-domain-containing-protein	gnl\|CDD\|235125	PRK03430, PRK03430, hypothetical protein; Validated.	6.5989e-106
NZ_CP013940.1\|WP_007778653.1\|244222_244795_+\|L-threonylcarbamoyladenylate-synthase-type-1-TsaC	gnl\|CDD\|182603	PRK10634, PRK10634, L-threonylcarbamoyladenylate synthase type 1 TsaC.	6.46774e-141
NZ_CP013940.1\|WP_032968443.1\|265394_265673_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|162974	TIGR02683, Uncharacterized_protein_HI_1419, putative addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.	7.01489e-42
NZ_CP013940.1\|WP_007778610.1\|267365_268958_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226997	COG4650, RtcR, Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].	0
NZ_CP013940.1\|WP_023897885.1\|259517_263201_+\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NZ_CP013940.1\|WP_007778636.1\|252242_253172_+\|homoserine-O-succinyltransferase	gnl\|CDD\|235433	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional.	0
NZ_CP013940.1\|WP_007778643.1\|245846_246404_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|223735	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only].	6.85365e-81
NZ_CP013940.1\|WP_004387513.1\|258483_259320_-\|glyoxylate-bypass-operon-transcriptional-repressor-IclR	gnl\|CDD\|183206	PRK11569, PRK11569, glyoxylate bypass operon transcriptional repressor IclR.	0
NZ_CP013940.1\|WP_023897884.1\|256649_258440_+\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	gnl\|CDD\|226945	COG4579, COG4579, Isocitrate dehydrogenase kinase/phosphatase [Signal transduction mechanisms].	0
NZ_CP013940.1\|WP_004387518.1\|266267_267203_-\|ketopantoate/pantoate/pantothenate-transporter-PanS	gnl\|CDD\|223462	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only].	1.38718e-100
NZ_CP013940.1\|WP_007778619.1\|263466_265098_+\|Na/Pi-cotransporter-family-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	0
NZ_CP013940.1\|WP_007778632.1\|255079_256387_+\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0

>NZ_CP013940.1|WP_007778632.1|255079_256387_+|isocitrate-lyase
MTTTRTQQIQQLEQEWTNPRWEGIRRPYSAQDVVKLRGSVNPECTLAQLGSARMWRLLHGESKKGYVNSLGALTGGQALQQAKAGIEAIYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWAAGIEPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLAADVMGVPTLLIARTDADAADLITSDCDPYDSEFITGERTSEGFFRTRAGVEQAISRGLAYAPYADLVWCETSTPDLDQARRFAEAIHARFPGKLLAYNCSPSFNWKKKLDDKTIASFQEELSAMGYKYQFITLAGIHSMWFNMFDLAHAYAQGEGMRHYVEKVQQPEFAAGKEGYTFVSHQQEVGTGYFDNVTTIIQGGVSSVTALTGSTEEAQF
>NZ_CP013940.1|WP_023897883.1|253446_255045_+|malate-synthase-A
MNQQAMTAELAFSQPFGEQERQILTPEAVDFLTELVARFTPQRNDLLAVRQQVQKEIDGGKLPDFISETASIRNGDWKIRGIPDDLRDRRVEITGPVERKMVINALNANVKVFMADFEDSLAPAWNKVIEGQINLRDAIKGTITWTNEAGKIYQLRPNPAVLICRVRGLHLPEKHVTWRDEPVPGSLFDFALYFFHNYKNLLAKGSGPYFYLPKTQSWQEAAWWSDVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNHPDRVLPDRQSVTMDKPFLNAYSRLLIKTCHRRGAFAMGGMAAFIPSKDTERNNWVLNKVKADKELEAANGHDGTWIAHPGLGDTVMAVFDAALGEHKNQLHVLREDDAPITAAQLLEPCPGERTEEGMRANIRVAVQYIEAWISGNGCVPIYGLMEDAATAEISRTSIWQWIHHQKTLSNGSKVTKDLFRQMLAEEMRVIQEELGEQRYSHGRFDEAARLMEQITTSDELIDFLTLPGYRLLA
>NZ_CP013940.1|WP_007778636.1|252242_253172_+|homoserine-O-succinyltransferase
MPIRVPDELPAVNFLRQENVFVMTTSRASVQEIRPLKVLILNLMPKKIETENQFLRLLSNSPLQVDIRLLRIDSRESRNTPAEHLNNFYCNFEDICDENYDGLIVTGAPLGLVEFNDVAYWPQIQQVLEWAKEHVTSTLFVCWAVQAALNILYGIPKQTRQEKISGVYEHHITQPHALLTKGFDDTFLAPHSRYADFPAALIRDYTDLDILAESEEGDAYLFASKDKRIAFVTGHPEYDALTLAGEYFRDVEAGLAPRVPYNYFPNDDPTKTPRATWRSHGNLLFTNWLNYYVYQITPYDLRHMNPTLE
>NZ_CP013940.1|WP_007778643.1|245846_246404_-|gamma-carbonic-anhydrase-family-protein
MSSSVLRPYKNTFPTTGQRVMVDSSSVVIGDVRLADDVGVWPLVVIRGDVNYVAVGTRTNIQDGSVLHVTHKSSYNPEGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAVIEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRQLKDTELEGLRYSANNYVKWKDEYLAQESQTQP
>NZ_CP013940.1|WP_007778648.1|245613_245871_+|DUF1488-domain-containing-protein
MNQAIQFPDREHWDEQRQAICFPALVRGIVLTCAIPQSVLVARFSGTSPEEWIAAFRQHRWDLEEEAEQLIAAQAEDDQGWVWLS
>NZ_CP013940.1|WP_007778650.1|244798_245617_+|shikimate-dehydrogenase
METYAVFGNPVSHSKSPFIHQQFAQQLQITHPYGRVLAPLDNFVKTLENFFSAGGKGANVTVPFKEQAFARADELTERAALAGAVNTLKRLEDGRLLGDNTDGIGLLSDLERLGMIQPRYRILLVGAGGAARGVLLPLLSLDCVVTITNRTFARAQELATLFSHTGSVNAIALTDLADHEFDLIINATSSGIHGEIPALPPSLPGKTTMCYDMFYQKGLTPFLAWCQAQGATQLADGLGMLVGQAAHAVLLWHGVLPEVVPVIEKLRQELAQ
>NZ_CP013940.1|WP_007778653.1|244222_244795_+|L-threonylcarbamoyladenylate-synthase-type-1-TsaC
MKNNQPADAISSIVDVLKKEQVIAYPTEAVFGVGCDPDSETAVKRLLELKQRPMEKGLILIAANFEQLKPYIDDAVLTPEQHEAVFARWPGPVTFVFPAKPSTPRWLTGRFDSLAVRVTNHPQVIALCEAFGKPLVSTSANLSGLEPCRTAQEVLAQFGDDFPVLHGATGGRQNPSEIRDALTGELFRQG
>NZ_CP013940.1|WP_032970996.1|243675_244233_+|hypothetical-protein
MARSALFSVPKHEPCPKCGAELLIRSGKHGPFLGCSHYPECDYVRPLKSQADGHIVKVLEGQQCPACDATLVLRQGRFGMFIGCSRYPECEHTEQIDKPDETALRCPQCSDGHLVQRRSRFGKTFYSCDRYPECQFVINTRPVAGECPECHYPLLTEKKTAQGIKRFCASKQCGKPVTAEKDSEE
>NZ_CP013940.1|WP_004388634.1|243178_243652_+|DUF494-domain-containing-protein
MFDVLMYLFETYIHNEAEMRVDQDKLTRDLTDAGFDQEDIFNALLWLEKLADYQDGLSAPMQLASDPLSMRIYTAEECQRLDASCRGFLLFLEQIQVLNLETREMVIERVMALDTAEFDLEDLKWVILMVLFNIPGCENAYQQMEELLFEVNDGMLH
>NZ_CP013940.1|WP_007778660.1|242094_243207_+|DNA-protecting-protein-DprA
MSPTEIWLRLMAVYSLGGEIMVRAFKRLQNMPGDPALALRLAGLNIKQRTLFFNYPQAKLEAVLRWLDMPGHHLITALSPEYPVALRAIDCFPGALLVAGDPRALSRPQLAVVGSRHHSWYGEQWGSKLCYALAESGLTLTSGLALGIDAIAHRSALKAQGKTIAVLGNGLAQIYPARHRKLAEEIVERGGALVSEFPFEAQPRPAHFPRRNRIISGLGVGVLVVEAALRSGSLVTARCALEQGREVFALPGPVGNPGCEGPHWLIQQGAVAVTHPQDIIDYLQNELPWLTTVNYSPDQEEGALPFPELLANVGDEVTPVDVVAERAGQPVPLTVAQLLELELAGWIAAVPGGYVRVRRAGHVRRTNVFV
>NZ_CP013940.1|WP_023897884.1|256649_258440_+|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase
MPPRGLELLIAQTILQGFDAQYGRFLEITAGAQHRFEQADWHAVQQAMKSRIHLYDHHVGLVVEQLRCIMEGKATDPDFLLRVKRHYTDLLPDYPRFEIAESFFNSVYCRLYDHRSLTPDRLFIFSSQPERRFRTMPRPLAKNFFPEQGWQPLLTTLLTDLPLRLPWQDLARDVRYIIAHLNETVGPARLAQAHLEVANELFYRNKAAWLVGKLRLPDATLPFLLPVHRSDDGELFVDTCLTGSAGASIVFGFARSYFMVYAPLPAALVEWLREILPGKTTAELYMAIGCQKHAKTESYREYLHYLRHADEQFIEAPGIRGMVMLVFTLPGFDRVFKVIKDRFAPQKEMSEAHVRACYQLVKEHDRVGRMADTQEFENFVIEKRRISPELMALLQQEVGQKLTDMGDKISISHLYIERRMVPLNIWLEQATGQQLRDAIEEYGNAIRQLAAANIFPGDMLFKNFGVTRHGRVVFYDYDEICYMTEVNFRDIPPPRYPEDELSAEPWYSVAPGDVFPEEFRHWLCADPKIGPLFEEMHSDLFSASYWRALQTRIREGYVEDVYAYRRRQRFCVRWKNHNGHPEAAVSAIAPSAVGEG
>NZ_CP013940.1|WP_004387513.1|258483_259320_-|glyoxylate-bypass-operon-transcriptional-repressor-IclR
MVATVPAKRGKKPRNAAAAAAPQATGQVQSLTRGLKLLEWIAESQGSVALTELAQQAGLPNSTTHRLLTTMQQLGFVRQVGDLGHWAIGAHAFIIGSSFLQSRNLLAIVHPILRKLMEESGETVNLAVLDKSDHQAIIIDQVQCTQLMRMSAPIGGKLPMHASGAGKAFLSQLSDEDVSALLHRQGLKAYTHATLVAPAHLKDDLAQTRKRGYSFDDEEHALGLRCVAACIYDEHHEAFAAISISGPISRMTDDRVTELGAMVIRAAKEVTQAFGGVR
>NZ_CP013940.1|WP_023897885.1|259517_263201_+|methionine-synthase
MSSKSEQLHRQLAERIMVLDGGMGTMIQSYRLDEEDFRGERFADWPCDLKGNNDLLVLTKPDIIAAIHYAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINYEAAKLARACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDQLVEAYRESTRALIEGGSDLILIETVFDTLNAKAAIFAVKAEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHADALTFGLNCALGPDELRQYVAELSRIAECYVTAHPNAGLPNAFGEYDLDADVMAAQIREWAESGFLNIVGGCCGTTPEHIAAMSRAVEGLPPRKLPDIPVACRLAGLEPLNIGDDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVGAFVHHAKLVRRYGAAVVVMAFDEVGQADTRERKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIDEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDDLPTELRDAVEDVILNRRADGTERLLALAEKYRGSKADNAADAQQAEWRTWDVKKRLEYSLVKGITEFIEQDTEEARQQAARPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPYIQASKEVGKSNGKIVLATVKGDVHDIGKNIVGVVLQCNNYEIIDLGVMVPTDKILKTAREVNADIIGLSGLITPSLDEMVNVAKEMERQGFTLPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVSALLSDTLRDDFVARTRKEYETVRIQHGRKKPRTPPVTLAAARENDLAFDWESYTPPAAHRLGVEEVTASIETLRNYIDWTPFFMTWSLAGKYPRILEDEIVGEEAQRLFKDANEMLDKLSAEKSLTPRGVVGLFPANRVGDDIEIYRDETRTHVLSVSHHLRQQTEKVGFANYCLADFVAPKSSGKADYLGAFAVTGGLEEDALAEAFDAQHDDYNKIMVKAVADRLAEAFAEYLHERVRKVLWGYAPYENLSNEELIRENYQGIRPAPGYPACPEHTEKSVIWDLLDVENRIGMKLTESYAMWPGASVSGWYFSHPESKYFAVAQIQRDQVEDYAQRKGMSVSEVERWLAANLGYDAD
>NZ_CP013940.1|WP_007778619.1|263466_265098_+|Na/Pi-cotransporter-family-protein
MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRSVLSRSVEKKPLAFCAGIGVTALVQSSNATTLLVTSFVAQDLVALTPALVIVLGADVGTALMARVLTFDLSWLSPLLIFIGVIFFLGRKQSRAGQMGRVAIGLGLILQALELIVQAVTPITKASGVQVIFASLTGDIMLDALIGAVFAVISYSSLAAVLLTATLTATDVISFQVALCLVIGANLGSGLLAMLNNGAASPAARRVALGSLLFKLVGSLLVLPFVPLLAQSLHKLPLEESELVIYFHVFYNLIRCLVMVPFAGMMARLCQRIIPDAPETDLRMKPRHLDPSALDTPALGLANAARETLRIGDVLEQMLEVYGKVMHGEPRQEKTLRRLADDVDVLYTAIKLYMARMPKEDLAEDEAKRWAEIIEMSLNLEQAADILERMGSEVANKSLAARRAFSPEGVKELDTLLEKLTANLKLSLSVFFAGDVQSARRLRRHKHRFRILNRRYAHAHVDRLHQQNVQSIETSSLHLGLLGDMKRLNSLFCAVAYSILEQPDDDEERLEE
>NZ_CP013940.1|WP_007778618.1|265114_265390_-|putative-addiction-module-antidote-protein
MKLTEYDPAAALIDDEEIAFFMADALETGDAGHIAKALGVVARAKGMAHIAAQTGLSREQLYRSFSDKGNPTLKTTLAVMKALGLGLTIKS
>NZ_CP013940.1|WP_032968443.1|265394_265673_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MPPWQASLKDQRVKTMIAARLFRLANGLPGDVKHVGTGISELRIHYGEGYRIYFKQHGDVIVILLCGGDKHTQDKDILLAKMLADLPENQWR
>NZ_CP013940.1|WP_007778613.1|265904_266177_-|DUF3811-domain-containing-protein
MSLPRLTQKEMTESEQRELKTLLDRARIAHGRPLTNSEANHVKKEYIDKLMAQREQAAKQTRKQKKAQSYKPDSDATFSWSASTPVRGRR
>NZ_CP013940.1|WP_004387518.1|266267_267203_-|ketopantoate/pantoate/pantothenate-transporter-PanS
MLATLTRLFPLWALLLSVIAYYTPATFTPIGPWVSTLLMLIMFGMGVHLKLDDFKRVLSRPAPVAAGIFLHYLVMPLAAWLLAMLFHMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVALSVTISSVSTLVGVVATPLLTRLYVDAHIQVDVMGMLLSILQIVVIPIALGLIVHHLFPRVVKAVEPYLPAFSMVCILAIISAVVAGSASHIASVGLMVIVAVILHNSIGLLGGYWGGRLFGFDESTCRTLAIEVGMQNSGLAAALGKLYFSPLAALPGALFSVWHNLSGSLLAGYWSGKPVDKNARRSGR
>NZ_CP013940.1|WP_007778610.1|267365_268958_-|sigma-54-interacting-transcriptional-regulator
MQKRRVVIGMLGTVLDRRGKRANRWNKWRPSIALCQQPGLPVDRFELLHQARDASLAERVMEDIAAVSPHTEVRPHTVVMDDPWDFEEVYAALLDFATRYPFDTENEEYLVHITTGTHVAQICWFLLTEARYLPAALLQTSPDRQGDEKDQKATGTASVIDLDLSRYATLTSRFQREQQQSVSFLKSGIDTRNATFNRLIDQIERVALRSTAPILLTGPTGAGKSFLAKRIFQLRQARHLVQGKLVSVNCATLRGDNAMSTLFGHVKGAFTGAQQARPGLLREADGGVLFLDEIAELGLDEQAMLLKAIEEKTFFPFGSDKEVRSDFQLIAGTHRDMARWVAEGRFREDLYARINMWAFALPGLAERREDIAPNVEYELQRFSAQQQTQIRFDKTARERYLAFACSPQARWPGNFRELGSSVARMATLAEQGRITDALVEEEIARLSASWQPLAGPAAALPVDTTTLDLFDQDQLAAVVAVCRRSASLSEAGRTLFAVSRQKKANPNDADRLRKYLARFGLSWEQVKAPE
>NZ_CP013940.1|WP_014727948.1|269064_269319_-|hypothetical-protein
MAVANDSTAGVLLLTFLWKEKESSGVEPDKPTVFHVIALAERPLDNVLPFPVRRRGYKPLHTQRADEVIIARSVPVSVKVKINF

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Crispr_ID: NZ_CP013940_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_5

305371-305462

Orphan

Consensus_repeat	Method
TGGCGGTGGGTGCGCTTCGCTTACCCACCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_5

>merge|NZ_CP013940|5|305371-305462|CRISPRCasFinder
TGGCGGTGGGTGCGCTTCGCTTACCCACCCTACGGGTACGTTAAACCCTGGTTTATTAATGGCGGCGGGTGCGCTTCGCTTACCCACCCTAC

>NZ_CP013940|5|5|305371-305462|CRISPRCasFinder
TGGCGGTGGGTGCGCTTCGCTTACCCACCCTAC	GGGTACGTTAAACCCTGGTTTATTAA
TGGCGGCGGGTGCGCTTCGCTTACCCACCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_007778556.1\|297987_298494_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380353
NZ_CP013940.1\|WP_023897904.1\|310231_312523_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|368641
NZ_CP013940.1\|WP_007778544.1\|301582_302566_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|182701
NZ_CP013940.1\|WP_007778525.1\|309506_309860_+\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP013940.1\|WP_004386202.1\|316567_317104_+\|single-stranded-DNA-binding-protein-SSB1	unknown	unknown	gnl\|CDD\|236362
NZ_CP013940.1\|WP_023897907.1\|313511_316337_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP013940.1\|WP_007778530.1\|309087_309510_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NZ_CP013940.1\|WP_007778519.1\|312552_312897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_032983416.1\|307276_308959_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP013940.1\|WP_007778516.1\|312909_313422_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_032968435.1\|295558_296866_+\|MATE-family-efflux-transporter-DinF	unknown	unknown	gnl\|CDD\|182413
NZ_CP013940.1\|WP_007778547.1\|301140_301401_+\|envelope-stress-response-protein-PspG	unknown	unknown	gnl\|CDD\|181875
NZ_CP013940.1\|WP_007778553.1\|298642_299923_+\|conjugal-transfer-protein-TraF	unknown	unknown	gnl\|CDD\|372693
NZ_CP013940.1\|WP_007778550.1\|300013_301009_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NZ_CP013940.1\|WP_007778508.1\|317449_318496_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP013940.1\|WP_004388591.1\|297073_297283_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|182452
NZ_CP013940.1\|WP_004388592.1\|297362_297878_-\|zinc-uptake-transcriptional-repressor-Zur	unknown	unknown	gnl\|CDD\|183251
NZ_CP013940.1\|WP_007778537.1\|305636_306830_+\|aromatic-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|181731
NZ_CP013940.1\|WP_032986277.1\|304266_305346_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP013940.1\|WP_004388597.1\|302686_304093_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181193

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_007778556.1\|297987_298494_+\|cupin-domain-containing-protein	gnl\|CDD\|380353	cd02224, cupin_SPO2919-like, Silicibacter pomeroyi SPO2919 and related proteins, uncharacterized sugar phosphate isomerase with a cupin domain. This family includes proteins similar to sugar phosphate isomerase SPO2919 from Silicibacter pomeroyi and Afe_0303 from Acidithiobacillus ferrooxidans, but are as yet uncharacterized. Structures of these proteins show a cupin fold with a conserved "jelly roll-like" beta-barrel fold that form a homodimer.	3.07314e-47
NZ_CP013940.1\|WP_023897904.1\|310231_312523_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|368641	pfam05860, Haemagg_act, haemagglutination activity domain. This domain is suggested to be a carbohydrate- dependent haemagglutination activity site. It is found in a range of haemagglutinins and haemolysins.	5.75897e-22
NZ_CP013940.1\|WP_007778544.1\|301582_302566_-\|quinone-oxidoreductase	gnl\|CDD\|182701	PRK10754, PRK10754, NADPH:quinone reductase.	0
NZ_CP013940.1\|WP_007778525.1\|309506_309860_+\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	1.48642e-47
NZ_CP013940.1\|WP_004386202.1\|316567_317104_+\|single-stranded-DNA-binding-protein-SSB1	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	1.40106e-102
NZ_CP013940.1\|WP_023897907.1\|313511_316337_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP013940.1\|WP_007778530.1\|309087_309510_+\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	8.32496e-61
NZ_CP013940.1\|WP_032983416.1\|307276_308959_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	3.99707e-149
NZ_CP013940.1\|WP_032968435.1\|295558_296866_+\|MATE-family-efflux-transporter-DinF	gnl\|CDD\|182413	PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional.	0
NZ_CP013940.1\|WP_007778547.1\|301140_301401_+\|envelope-stress-response-protein-PspG	gnl\|CDD\|181875	PRK09459, pspG, envelope stress response protein PspG.	2.23663e-23
NZ_CP013940.1\|WP_007778553.1\|298642_299923_+\|conjugal-transfer-protein-TraF	gnl\|CDD\|372693	pfam13729, TraF_2, F plasmid transfer operon, TraF, protein.	5.77752e-83
NZ_CP013940.1\|WP_007778550.1\|300013_301009_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NZ_CP013940.1\|WP_007778508.1\|317449_318496_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.61575e-53
NZ_CP013940.1\|WP_004388591.1\|297073_297283_+\|CsbD-family-protein	gnl\|CDD\|182452	PRK10428, PRK10428, hypothetical protein; Provisional.	1.72474e-33
NZ_CP013940.1\|WP_004388592.1\|297362_297878_-\|zinc-uptake-transcriptional-repressor-Zur	gnl\|CDD\|183251	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur.	9.27496e-121
NZ_CP013940.1\|WP_007778537.1\|305636_306830_+\|aromatic-amino-acid-transaminase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP013940.1\|WP_032986277.1\|304266_305346_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP013940.1\|WP_004388597.1\|302686_304093_+\|replicative-DNA-helicase	gnl\|CDD\|181193	PRK08006, PRK08006, replicative DNA helicase DnaB.	0

>NZ_CP013940.1|WP_032986277.1|304266_305346_+|alanine-racemase
MQAATVVVNRRALRHNLQRLRELAPASQLVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLREGGITQPILLLEGFFNAGDLPAIAAQQLHTAVHSEEQLMALEQAMLSEPVTVWMKLDTGMHRLGVRPEAAQAFYDRLAACKNVRQPVNVVSHFARADEPDCGATERQLDIFNSFTHDKPGKRSIAASGGILFWPQSHFDWVRPGIILYGVSPLDTHPWGAELGFQPAMSLTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRCAPTGTPVLVNGREVPIVGRVAMDMICVDLGPDAAEKAGDTVVMWGEGLPVERIAEATGVSAYELVTRLTSRVAMRYLD
>NZ_CP013940.1|WP_004388597.1|302686_304093_+|replicative-DNA-helicase
MAGNKPFNKPTEPRDPQVAGLKMPPHSMEAEQSVLGGLMLDNERWDDVAERVVAEDFYTRQHRMIFTEMHRLQEMGKPIDLITLSESLELQGQLESVGGFAYLAELSKNTPSAANISAYADIVRERAVVRDMISVANEIADAGYDPQGRTSEDLLDLAESRVFQIAENRANKDEGPKSIDQILEATVARIETLYQQPHDGVTGVDTGYQDLNKKTAGLQRSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIYREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE
>NZ_CP013940.1|WP_007778544.1|301582_302566_-|quinone-oxidoreductase
MATRIEFSQHGGPEVLKAVTFTPADPDEMEVQVENKAIGINYIDTYIRSGLYPPPALPAGLGTEAAGVVTKVGSGVTHLKPGDRVVYAQSALGAYSSVHNVPADKAVVLPDVISFEQAAACFLKGLTVFYLLRKTYEIKPDEMFLFHAAAGGVGLIACQWAKALGARLIGTVGSAEKAQRAKQAGAWQTINYREENVPERLRELTGGKKVRVVYDSVGKETWESSLDCLQRRGLMVSFGNSSGPVTGVNLGILNQKGSLYVTRPSLNGYLTNRAELEEASNELFSLIASGVIKVEVAESQKFALEDAARAHKTLESRSTQGSSLLIP
>NZ_CP013940.1|WP_007778547.1|301140_301401_+|envelope-stress-response-protein-PspG
MFELLFVVAFFLMLLATGVSLIGIIAALMVATLVMFFGGVFALMIKLLPWLLLAVAVVWVIRTVKAPKVPEYRRTSRYSRTNRWRY
>NZ_CP013940.1|WP_007778550.1|300013_301009_+|tRNA-dihydrouridine(20/20a)-synthase-DusA
MTSTSRNAFPAHRFSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAHCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVRAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVDREIFGLDVPDADPVAVVRAMYPYIEGELAKGTYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKPGADINVLEQALKLVADKR
>NZ_CP013940.1|WP_007778553.1|298642_299923_+|conjugal-transfer-protein-TraF
MKNIIKPSVAAVALSLVMANQASAANTWAQARNDAMGGTGVASADYGSGALINPALLARSQPEDDITVILPALQAQITDKDNLEDEIDHISDRVDYYRDVVNSLTPGDIAANPIGTLRQFQGAARELGDELEYLRGKTASARAAGGIAVSIPNDVLAVAFVAKAYAHARVSTRVDQSDIDYLRRIQNDDIYAGTQIINAAINGSDAITDRLTSTAFGRAAIVSDYGVAFAHRFQVGDVPVSVGVTPKLQKTWLYNYTASIYNYDSSDWNSSRYRNDDTGFNVDAGVAADFGPNWTVGVSGQNLMSRDIDTKEVNGYKDTYQISPLVTAGVAWHNDLVTLSADGDLTETKGFKSEENSQFVGVGAEVRPLNWLAVRAGFRADVKDNESNVFTAGVGFAPFNRVHLDLTGIVGEDETWGAGAQLSLTF
>NZ_CP013940.1|WP_007778556.1|297987_298494_+|cupin-domain-containing-protein
MHTRPECICHWQEVEGNDDACYPDSDELMSIGAPLAKRTGLTRLGIHHERLPPGRRTSYPHAESSEEEFVYVLEGFPDVWLNGELWPLKPGDSVGFPAGTGLCHTFINNTDSEVRLLVVGEANKPENRVYYPLNGPYAATRPDRWIDHPPQFFGPHDGLPTRIKNPNL
>NZ_CP013940.1|WP_004388592.1|297362_297878_-|zinc-uptake-transcriptional-repressor-Zur
MDTTISQEVLAQAEKLCQQRNVRLTPQRLEVLRLMTIQPGAISAYDLLDLLRESEPQAKPPTVYRALDFLLEQGFVHKVESTNSYVLCHLFDNPAHTSAMFICDRCGVVKEEAAEGVEDIMHALAARMGFALRHNVIEAHGLCAACAEIEACRHQGQCGHDHSITVKKKGR
>NZ_CP013940.1|WP_004388591.1|297073_297283_+|CsbD-family-protein
MNRDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYAKDEADKEVTDWESRHDYRW
>NZ_CP013940.1|WP_032968435.1|295558_296866_+|MATE-family-efflux-transporter-DinF
MPFLTSTDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGARDPVALARALVQPMALALIAGVLIIALREPLIHLALHVTGGSDAVLTQARRFLEIRWLSAPAALANLVLLGWLLGVQYARAPVILLVVGNLLNIVLDLWFVMGLGLNVQGAALATAIAEYATLGIGLMMAARVLRLRGITLSMLKMAWRGGVGRLLALNRDIMLRSLLLQLCFGSITVFGARLGSDIVAVNAILMTLLTFTAYALDGFAYAVEAHAGQAFGAQDKSQLNSVWRAACRQAGMVALAFALLYAVAGQYIVSLLTSLPSLQALAQPYLFWQAILPVVGVWCYLLDGMFIGATRGAEMRNSMAVAALGFGLTLLTLPALGNHGLWLALTFFLALRGLSLGYLWRRGRLLH
>NZ_CP013940.1|WP_007778537.1|305636_306830_+|aromatic-amino-acid-transaminase
MFQNVDAYAGDPILSLMERFKEDPRSDKVNLSIGLYYNEQNIIPQLQAVAQAEQRLNAQPHGASLYLPMEGLNNYRSAIAPLLFGADHPALTAGRIASIQTVGGSGALKIGADFLKRYFPQSRVWVSDPTWENHVAIFNGAGFEVSTYPWFDAETNGVRFEALLEKLNTLPARDIVLLHPCCHNPTGADLTNAQWDVVVEVLKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVVCDDAETAARVLGQLKATVRRNYSSPPNFGAQVVATVLNDATLKAQWLAEVEAMRCRILEMRQALVDVLKTEVPGRNFDYLLKQRGMFSYTGLSAAQVDRLRDEFGVYLISSGRMCVAGLNSRNVKQVAQAFAAVM
>NZ_CP013940.1|WP_032983416.1|307276_308959_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MIVRRSNVYPAILSVLVGWHSPVYAEVIANQQALNQQQQNEARHESLAPESKSLLSTAEVKPREGLNLPEEQPCYPVNAIQIDNKNAVAHWMSFQDVVRSVKGKCVGINGLKMIHKTVQNRLIEHGYITTRVLIPAQDLKSGTLKFQILPGTISEIVFKGDGGKYIHAINNFPERQGDVLDLRGLEQGLENLQRTPGSETNIQLLPGTKPGETRVEVTRTQPKHWRLGAWADDSGSKYTGRYQSGLAFYLDNLTSLNDMFYAAYGGGLKNEDGRRSDNVSAFYSVPWGYWQLELYGSKYRYTQTIHDSVSSYLYSGIEKYLSAQLSRVIYRSASQKTTLALKAFRRDSTYLLNDVEIEVQRRKTSNWKLSLEHLTYLPFGQVKASLGYQKAAHWFNELEDAEEQVGSADPQARIVTMSVDGAFPFKLGKLSLSYEPHFMSQTSPDRLTQPDKFTIGNRWTVRGFDGETTIYADKGWYLRNDINLNLPQWGMQPYLGLDYGEVKGSKNDYWSGKQLAGAALGVRGVKGKFGYDLFAGVPLMKPEELHTSPFTLGFAMQWQY
>NZ_CP013940.1|WP_007778530.1|309087_309510_+|YjbQ-family-protein
MWFQQTLTLKSRPRGFHLITDEIVSQLPALSQVQTGLLHLLLQHTSASLTLNENCDPSVRRDMERYFQTAVPDNGHYEHDDEGPDDMPAHIKSSTLGVSLILPVKQGRLLLGTWQGIWLGEHRNHGGSRRIVATLQGETL
>NZ_CP013940.1|WP_007778525.1|309506_309860_+|MmcQ/YjbR-family-DNA-binding-protein
MTNSDLLDYCMNKPGAEQSEHREWKAAQIKVGDVMFAMVHEVSHRPAVSLKTSPELAELLRQEHKDVFPSAQLNKAHWSTVYLDGELPDSQIYYLVDASYQQAVGLLPEQIRQQLSV
>NZ_CP013940.1|WP_023897904.1|310231_312523_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MENKHGATFRAPKELRAKMGPVCFATLLALGMVQSAGAAITADTSAANQPGIHTSTSGATVVDINKASSEGVSHNIYSEFNVDKNGVVLNNSTTNTSTQQAGNINGNANLAGQSATIILNEVRSSDPSQLNGMVEVAGQSAQVIIANPSGITCDGCGFINTNHATLTTGTANFDDAGKLTGFDVQKGQVTITGAGMDVNNSGKPLMTDIYARSVKVNAKLQANNLNIITGANRINTNGTVKETLEGIGAAPAVALDVSSLGSMYAGKITMVGTDTGVGVRLDHADITAQDRLSISTAGKIENNNSVIASGNALTINSQSLDNSNGEIRSDAGSLVINSRQDLNNHNGKISGYDVSVNGGDTNNTDGIIQSKGNLSLTGFTLDNQNGVVSSGDDLSVNYNYSNHNDPSVYAIKNENGVMASAGNMFIQTVNLDNNSGLITADKALSISAAKLVNTNSDNFVASENWKGVNQAGGIYAGDSEGANTHSHYMTGESIISVASLDNEAGRIVSTGKNTDLHIMSSQVINNNEGIIDAAKSLTIDQRSQFNNGNGKVSAAQDLNINAYDFSSDAKGEIKANNINLHTSGTFNNSGVITASRDLLLNVGDAHSYLSETSYNKGQITAGGAMTVQTDMTNFVNEGTIKAGDALNWHGGNVINKGVIDSNSDIRFTVQSLKNAKGATIDGKSVTISGAVDNQGTITPDYIPDNGPAPHPDDNGGHTPMPDPAPAPRPDDGGHTPIPDQTPSHHSDSQSQSSSGSSSTYSHH
>NZ_CP013940.1|WP_007778519.1|312552_312897_-|hypothetical-protein
MSTLINAVGQALASPQFQKSALKIVADEFLGLLRQGLNDRETFINTSAEIAAQAVLDRSQGLISEEDMAALLNKQKTIAQIHANSSEIALRTRIQSITMRLLDLAASAIACGLK
>NZ_CP013940.1|WP_007778516.1|312909_313422_-|hypothetical-protein
MICARSQPMLNFAKGGQTQGNIMPRISTLTHYFPGWLLGLTVLISACSLVGNYQPRAHAQLTDLMAAHLQMIDDFTAPSGTLDTLALADADHTLQLRFAEALAYAESLGDPLRTDNLRLLQLVYREDHARLLRQHRPFTPAQAALWRAQARLAYLEAVRGECNRPASPCE
>NZ_CP013940.1|WP_023897907.1|313511_316337_-|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRCPDHDVTLAAQTVSQMVDNVLALPEGKRLMLLAPVIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALELSGGTAVVADMDDEKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVVQNGELSLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDVEAPWNTLSDKVQKAVLFGSGKETIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESNAVREELAKFISNRPCATCEGTRLRREARHVFVENTALPTISDMSIGHAMEFFNNMKLSGQRAKIAEKVLKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGPLDAIMAVPESLTGQFMSGKRKIEVPKERVKADPEKVLKLTGARGNNLKDVTLTLPVGLFTCVTGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDVQGMEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPEARSRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPLLK
>NZ_CP013940.1|WP_004386202.1|316567_317104_+|single-stranded-DNA-binding-protein-SSB1
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQVYIEGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQQQAPAPSNEPPMDFDDDIPF
>NZ_CP013940.1|WP_007778508.1|317449_318496_+|GGDEF-domain-containing-protein
MSERDRDQLLSQATDQYWQHIIPIVWLALLIHVGLIFLFLSMSIPTLAIFNIFSVMVYIHCLNEIEHYRYLYVGTLMSVEILAHAVATTVLLGWESNFYLFVFSLIPIVSFSFQQVPVRRALFLAAIAVLGTVGYALRHHTGTASGLSPAVLNGIGVANAVMAIGLLMYTTLRSVEFTHAMKLDLFNTASRDSLTNLYTRRHFMHQVSLLDKQPGTHNVALLLLDIDHFKTINDSSGHSYGDMILQRIARAITDNVRESDIVARWGGEEFLVLMPDTSLPDARRVAERLLTRIQEWVGQTDKNPREVTATLAISAFGKDEEFEKALNRADKMLYAGKQQGRNRLVIAD

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Crispr_ID: NZ_CP013940_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_6

458452-458567

Orphan

Consensus_repeat	Method
CGGTGGGTGCGCTTCGCTTACCCACCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_6

>merge|NZ_CP013940|6|458452-458567|CRISPRCasFinder
CGGTGGGTGCGCTTCGCTTACCCACCCTACAAAGATTTGCCGGGCGGTGGGTGCGCTTCGCTTACCCACCCTACAACGATTTGCCGGGCGGTGGGTGCGCTTCGCTTACCCACCCT

>NZ_CP013940|6|6|458452-458567|CRISPRCasFinder
CGGTGGGTGCGCTTCGCTTACCCACCCT	ACAAAGATTTGCCGGGCGGTGGGTGCGCTTCGCTTACCCACCCTACAACGATTTGCCGGG
CGGTGGGTGCGCTTCGCTTACCCACCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_004385262.1\|450750_451113_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132616
NZ_CP013940.1\|WP_032983363.1\|467845_468481_+\|glutaredoxin-2	unknown	unknown	gnl\|CDD\|236679
NZ_CP013940.1\|WP_007774503.1\|465844_466792_-\|HTH-type-transcriptional-regulator-TreR	unknown	unknown	gnl\|CDD\|181905
NZ_CP013940.1\|WP_007774511.1\|468901_469411_-\|YbjP/YqhG-family-protein	unknown	unknown	gnl\|CDD\|372360
NZ_CP013940.1\|WP_007774485.1\|455145_455886_+\|KDGP-aldolase-family-protein	unknown	unknown	gnl\|CDD\|188342
NZ_CP013940.1\|WP_007774481.1\|454030_455149_+\|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase	unknown	unknown	gnl\|CDD\|273623
NZ_CP013940.1\|WP_007774500.1\|458613_460749_-\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
NZ_CP013940.1\|WP_007774505.1\|467039_467657_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013940.1\|WP_004385264.1\|451441_452218_+\|DUF4311-domain-containing-protein	unknown	unknown	gnl\|CDD\|274659
NZ_CP013940.1\|WP_023897968.1\|462569_464231_-\|alpha,alpha-phosphotrehalase	unknown	unknown	gnl\|CDD\|182849
NZ_CP013940.1\|WP_004385265.1\|452228_452873_+\|DUF4310-family-protein	unknown	unknown	gnl\|CDD\|339115
NZ_CP013940.1\|WP_007778249.1\|450410_450734_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132621
NZ_CP013940.1\|WP_004386042.1\|468539_468842_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP013940.1\|WP_023897962.1\|452913_454047_+\|amidohydrolase/deacetylase-family-metallohydrolase	unknown	unknown	gnl\|CDD\|236423
NZ_CP013940.1\|WP_004386038.1\|464291_465710_-\|PTS-trehalose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|182896
NZ_CP013940.1\|WP_023897965.1\|457961_458426_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|236853
NZ_CP013940.1\|WP_007774487.1\|455999_457910_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP013940.1\|WP_007764242.1\|451116_451419_+\|DUF4312-family-protein	unknown	unknown	gnl\|CDD\|213831
NZ_CP013940.1\|WP_023897967.1\|462029_462560_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|179895
NZ_CP013940.1\|WP_007774501.1\|461045_461927_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_004385262.1\|450750_451113_+\|hypothetical-protein	gnl\|CDD\|132616	TIGR03577, EF_0830, conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	6.59449e-62
NZ_CP013940.1\|WP_032983363.1\|467845_468481_+\|glutaredoxin-2	gnl\|CDD\|236679	PRK10387, PRK10387, glutaredoxin 2; Provisional.	5.94566e-118
NZ_CP013940.1\|WP_007774503.1\|465844_466792_-\|HTH-type-transcriptional-regulator-TreR	gnl\|CDD\|181905	PRK09492, treR, HTH-type transcriptional regulator TreR.	0
NZ_CP013940.1\|WP_007774511.1\|468901_469411_-\|YbjP/YqhG-family-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	1.38978e-44
NZ_CP013940.1\|WP_007774485.1\|455145_455886_+\|KDGP-aldolase-family-protein	gnl\|CDD\|188342	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	1.63905e-151
NZ_CP013940.1\|WP_007774481.1\|454030_455149_+\|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase	gnl\|CDD\|273623	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP013940.1\|WP_007774500.1\|458613_460749_-\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NZ_CP013940.1\|WP_007774505.1\|467039_467657_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.4906e-10
NZ_CP013940.1\|WP_004385264.1\|451441_452218_+\|DUF4311-domain-containing-protein	gnl\|CDD\|274659	TIGR03580, EF_0832, conserved hypothetical protein EF_0832/AHA_3913. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Unknown function, General].	4.72687e-158
NZ_CP013940.1\|WP_023897968.1\|462569_464231_-\|alpha,alpha-phosphotrehalase	gnl\|CDD\|182849	PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional.	0
NZ_CP013940.1\|WP_004385265.1\|452228_452873_+\|DUF4310-family-protein	gnl\|CDD\|339115	pfam14187, DUF4310, Domain of unknown function (DUF4310). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 214 and 231 amino acids in length.	3.37574e-102
NZ_CP013940.1\|WP_007778249.1\|450410_450734_+\|hypothetical-protein	gnl\|CDD\|132621	TIGR03582, EF_0829, PRD domain protein EF_0829/AHA_3910. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown. [Unknown function, General].	7.92542e-38
NZ_CP013940.1\|WP_004386042.1\|468539_468842_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	3.53708e-21
NZ_CP013940.1\|WP_023897962.1\|452913_454047_+\|amidohydrolase/deacetylase-family-metallohydrolase	gnl\|CDD\|236423	PRK09237, PRK09237, amidohydrolase/deacetylase family metallohydrolase.	0
NZ_CP013940.1\|WP_004386038.1\|464291_465710_-\|PTS-trehalose-transporter-subunit-IIBC	gnl\|CDD\|182896	PRK11007, PRK11007, PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional.	0
NZ_CP013940.1\|WP_023897965.1\|457961_458426_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|236853	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein.	1.2573e-125
NZ_CP013940.1\|WP_007774487.1\|455999_457910_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.07766e-70
NZ_CP013940.1\|WP_007764242.1\|451116_451419_+\|DUF4312-family-protein	gnl\|CDD\|213831	TIGR03578, EF_0831, conserved hypothetical protein EF_0831/AHA_3912. Members of this family of small (about 100 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	3.99277e-42
NZ_CP013940.1\|WP_023897967.1\|462029_462560_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|179895	PRK04930, PRK04930, glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional.	2.48735e-52
NZ_CP013940.1\|WP_007774501.1\|461045_461927_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.76006e-63

>NZ_CP013940.1|WP_023897965.1|457961_458426_-|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MNYHQYYPVDVVNGPGTRCTLFVAGCVHQCPGCYNKSTWRLNSGAPFTADMENRIIADLNDTRVKRQGLSLSGGDPLHPQNVSAILKLVQRVRAECPGKDIWVWTGYKIDELSDAQREVVNLINVLVDGKFVQDLKDPALIWRGSSNQVIHRLR
>NZ_CP013940.1|WP_007774487.1|455999_457910_+|BglG-family-transcription-antiterminator
MRFPSQRLSRLFDLLQNETLPQDELARRLNVTTRTVRADISALNTLLCQHGVQLVLNRGSGYQLTVDDMERYQALQASRPKVLRIPRTAPERVHYLAVRFLTSAFSLKLEDLAEEWFVSRATLQNDMAEVRELFTRYNLTLETRPRHGMKLFGSEMALRACLTDLLWQLAQQDSANPLITEEALNAGVQERLAERLPTIFAHARLRFTDEGEQFIRLYCAVAVRRISEGFPLPEFVADDVDDNVREAARGTAALLQTLCGKPLSEAEENWLRVHIAARQVQELEPSAISADDAEALAGYILRYINTHYNYNLLTDEQLRADLLTHIRTMITRVRYQINIPNPLLGNIKQHYPMAWDMTLAAVSGWGKYTPYTISENEVGFLVLHIGVGLERHYNVGYQRNPRVLLVCDTGNSTVRMIQSMLLRKYPQLEVSEIATLRDYEQRVAIAEDFVISTARVAEKDKPVVVMSPFPTDFQLEQIGKLVLVDRTRPWMLEKYFDARHFRVVDGAMTQQQLFKELCDELEQDGYVGADFLPSVVEREAIVSTMLGDGIALPHSLGLMARKTVVYTVLAPQGIAWGEETAHVIFLLAISKREYEEAMTIYDLFVTFLRERAAQQLQTCRDFAQFQAVAMTCLSRF
>NZ_CP013940.1|WP_007774485.1|455145_455886_+|KDGP-aldolase-family-protein
MKLTPNFYRDRVCLNVLAGSKENASAIYEAAEGHVLVGVLSKNYPDVASAVEDMRDYAKRIDNALSVGLGAGDPNQSAMVSAIVRELQPQHVNQVFTGVGASRALLGQRETVVNGLVSPTGTAGLVKISTGPLSSSAPDGIVPVETAIALLKDMGGSSVKYFPMGGLACREEYQAMADACARHDFWLEPTGGIDLDNFQEILRIALEAGVSKVIPHIYSSIIDKASGDTRPEDVRRLLAMTRNLMG
>NZ_CP013940.1|WP_007774481.1|454030_455149_+|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase
MPSVYEKYELKQVINASGRMTILGVSTPRQEVVEAVTQGLNHYFEMKDLVNKTGAYIARLLEVEAATIVSCASAGLAQSVAAVLVKESDWLLENLHTTAIGQNEIVLPKGHNVNYGAPVGTMVALGGGKLVEAGYANECSAQQLAAAITPRTAAILYVKSHHCVQKSMLSVAQAAAVAREHQLPLIVDAAAEEDLQCYYRAGADLVIYSGAKAIEGPSSGLVIGKTQYVEWVKRQANGIGRAMKVGKEGILGLTSAIEHYLSAPKESGAQMVAKMTPFIDQLNTLNGVTARVVWDSAGRDIARSEITFDEAVTGINTGELVSALKQGEYAIYFRGYKANEGIIEADVRSVSAAQLEIVFRRIRDVLNQEAHA
>NZ_CP013940.1|WP_023897962.1|452913_454047_+|amidohydrolase/deacetylase-family-metallohydrolase
MFDLILRQARLVDDTLADIAIKDGKIAALGRVTGEARATRDLNGEHYVSPGWIDLHVHCYPKSPIYHDEPDAVGVTTGVTTVVDAGSTGANDIDDFYALTRGVATEVLALLNVSKVGLIAQNELADMANIDAAAAREAIARHPDFIVGLKARMSSSVVGENGIAPLERAKAIQQENGNLPLMVHIGNGPPPLDEIAARLSQGDIITHCFNGKPNRILTPQGQLRASISDALERGVRLDVGHGSASFSFEVARQAIALGILPHTISSDIYCRNRINGPVRSLAHVMSKFLAIGLSLPQVIDCVTLHAAQALRLAHKGQLTPGADADLTIFDLRRQPVLFTDADEETLHGDYLLVPLATVRAGAWHMTEQGSAEHAFSV
>NZ_CP013940.1|WP_004385265.1|452228_452873_+|DUF4310-family-protein
MEENKGFWYADWSFPIFVGLLSSGVFAGTHMYYLYGIGAFNEVAFVAMLKAGIDTGVYGAVAAFGASFLFARIIEGSLVGILDIGGAIQTGVGLGVPALLLGAGFVFPVANFAASLVTGLLIGLAIGYVIILARKFTINQSDSTYGADVMMGAGNASGRFLGPLIILSAMTASIPIGVGSLVGALLFYLWQKPITGGAILGAMILGSLFPVAIG
>NZ_CP013940.1|WP_004385264.1|451441_452218_+|DUF4311-domain-containing-protein
MFLIILIKSLIIGGLVGVGVGAGAARMFHAPTTQGMGAFRTLGELNSCEGDPASHFSFGLGFFFNAWASSVAAGAFTQDVDHRIIPNWGAAALMVKNRNLADTLHNPKKMAVACGLIGMAVVAFLNTTASAVPEALQVTAVKVLVPAANLLVNTVMPVIFWLAAIDAGKKSGFWATVFGGAAQLIMGNAVPGLVLGILIGKGVEESGWNRVTKVMMTAIVLLFVLSAFFRGFDMKMIESFRLTVPDWLSLIHNSLSGK
>NZ_CP013940.1|WP_007764242.1|451116_451419_+|DUF4312-family-protein
MKEQFTTTVRVKGKGDARARAFADALNQVQAAVMKASPHILLRIEPQDVQVVHARETVRKEAFLFFFLRRERRAFSVELDVTVNVTAINLDKVDFVTQHS
>NZ_CP013940.1|WP_004385262.1|450750_451113_+|hypothetical-protein
MEQITVVIGDRLGKGQKVAAGAEKAGARAVVVPGVAADMKLGDVMKTEGATFGISFCGSGGAGAITAQTKHGYKAKYGMRSVEEGVTAINEGCNVLGFGFMDKEELGERLVEAWKKKYGA
>NZ_CP013940.1|WP_007778249.1|450410_450734_+|hypothetical-protein
MNNAGCQHADDAATLAGRMLDEVYALLERHQITPNDVQRQMLSSHVRAMAHRSVTGEPLPEVEESLFEEISEGSMALAREIVAQFGNLPDEEAWLLSVHFEVAKENL
>NZ_CP013940.1|WP_007774500.1|458613_460749_-|anaerobic-ribonucleoside-triphosphate-reductase
MTPHVVKRDGCKVPFNSARIREAILRAAQAAGVDDADYCATVAEIVSSQMQNRREVDIHEIQTAVENQLMAGNYKQLARAYIEYRHDRDIAREKQGRLNKEIRGLVEQTNPALLNENANKDSKVIPTQRDLLAGIVAKHYARQYLLPRDVVLAHERGEIHYHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVTASFEKHRRTALEWNIPDVEGYARARTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQSSILRNRIAGLGKNHKTAVFPKLVFAIRDGLNHKAGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVYEENGEQIHDGRNNLGVISLNLPRIALEAKGDETAFWALLDERLKLARKALMTRIARLEGVKARVAPILYMEGACGVRLKPDDDVAEIFKNGRASISLGYIGIHETINALSGNQHIYDSETLRAKGIAIVERLRQAVDRWKEETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPGVTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPLASGGFICYGEYPNLQHNLKALEDVWDYSYHHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDASRVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHLGNGQLG
>NZ_CP013940.1|WP_007774501.1|461045_461927_-|LysR-family-transcriptional-regulator
MTLTSDVHRLLPAFLAAAQSQSFSAAARLLGVTPAAISKSVRQLEARLGRVLFQRNTHFVVLTEEGAALREQVAPLWHALNQALEKPADEPQGLVRVSVIPGFGRYLLMPELSAFQQRYPQVRLDLAMDPRRVNLIGERIDVAIGQRTVQDSRIVTREIRPMRMMLAASPAYLARFGTPQQPQDLLHHRCLVHRNPGNGKLQSWLADELAMEEQHAFLISTFPDVLVDAALAEMGIVSLADWYLAPLIAAGRLVPLMETHWPAPQPLWVKYPHHRLAPRVRALVDFLIEKFTV
>NZ_CP013940.1|WP_023897967.1|462029_462560_+|NAD(P)H-dependent-oxidoreductase
MKKVLVLAGHRYPDDSRVNRAAIEALKALPQVTVHELMREYPDFNIDVKREQALLLTHDAVVMLFPFWWYSSPAILKEWQDQVLEHGFAYGTGGDRLHGKPFMLMVSTGGSAEAYSPQGYNRYPIDEFWLPFHAMANMTGMIWQPPALIQGTHVLSDADLDAGVAQWLSRVNALVR
>NZ_CP013940.1|WP_023897968.1|462569_464231_-|alpha,alpha-phosphotrehalase
MNNTLPWWQNGVIYQIYPKSFQDTSGNGTGDLAGVTRRLDYLQKLGVDAIWLTPFYLSPQVDNGYDVANYTAIDPAYGTLEEFDALVADAHARGIRVILDMVFNHTSTQHAWFHDALTRESAHREFYIWRDGTPEEAPNNWRSKFGGSAWRWHAESGQYYLHLFAPEQADLNWENPQVRAEVKKVCEFWADRGVDGLRLDVINLISKDQDFPSDDRGDGRRFYTDGPRIHDYLQELSRDVFQPRGLMTVGEMSSTTLENCQRYAALEGHELSMTFNFHHLKVDYPDGQKWTLAAPDFVALKAIFNHWQQGMHGVAWNALFWCNHDQPRIVSRFGDEGALRVPAAKMLAMVLHGMQGTPYIYQGEELGMTNPHFTRIIDYRDVESHNMFAERRAQGQSPETLLAILASKSRDNSRTPMQWDDSDNGGFTTGTPWIGLCDNYREINAARALNDPDSVFYAYQKLIRLRKAHPIFTWGDYHDLLAAHPYLWCYRREWQGQTLVVMANLSREAHWCTPGDFSGAWQVLMSNYPDAAPRPGEMNLRPFEAVIWLQGNA
>NZ_CP013940.1|WP_004386038.1|464291_465710_-|PTS-trehalose-transporter-subunit-IIBC
MSKVNQQDIDKLITLVGGRENIATVSHCITRLRFVLNQPSKADPKAIEELPMVKGCFTNAGQFQVVIGTNVGDYYQALIATSGHSAASKEQAKLAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDVPMHDGKTLAQMFPSLKTIYDFLWLIGEAIFFYLPVGICWSAVRKMGGTPILGIVLGVTLVSPQLMNAYLLGQQTPEVWDFGLFTIAKVGYQAQVIPALLAGLALGMIEIRLKRLVPDYLYLVVVPVCSLLLAVFLAHAFIGPFGRLIGDGVAFGVRHLMTGSFAPIGAALFGFLYAPLVITGVHQTTLAVDMQMIQSMGGTPVWPLIALSNIAQGSAVVGIIMTSRKHNEREISVPAAISAYLGVTEPAMYGINMKYRFPMLCGMVGSSIAALLCGLSGVVANGIGVGGLPAILSIQPDYWQVYGMAMLVAIIVPFILTAFLYKRKSRQGTLLVV
>NZ_CP013940.1|WP_007774503.1|465844_466792_-|HTH-type-transcriptional-regulator-TreR
MQHRLTIKDIARLSGVGKSTVSRVLNNESGVSERTREKVEAVMRQQGFSPSRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTILPALYEQGYDPIMLESRFSPALVQEHLGVLSRRHIDGVILFGFSGISEAMTAAWQKSLVLMARDAAGFASVCYEDDGAIRLLMQRLYDNGHRHISFLGVPHSDITTGKRRHEAYLHFCKQHALTPRDTLPGLAMKQGYEHAADVLDAETTALVCATDTLAIGASKYLQQRGGAPVQLASVGNTPLLKFLHPEAIAVDPGYGEAGRAAAKQLIDQITGRADPRQIVIPARLG
>NZ_CP013940.1|WP_007774505.1|467039_467657_-|TetR/AcrR-family-transcriptional-regulator
MQTDADHPESRKPKRGIATRRRLLKHACAEFARLGYHSTKVSNIVKASGLSQPTFYLYFASKEAAYEELVSEFRLRLERLTETLLIRDRIEGEALVKSVQNSFLKLLNFLAEDKALTEIGFFQPPGCTQTKATLVNAIASNIASEQTLGLFRSDIDALHMARCCVGMIDQMARVPADEAVPEALALGCAQLLCEGIWLRRQHHDV
>NZ_CP013940.1|WP_032983363.1|467845_468481_+|glutaredoxin-2
MKLHIYEHCPFCVRALMIFGLKKLPVEVCVIMEGDAETPTRMVGRKVVPILEKDDGTYMPESMDIVRYMDGLAQPRVADAPVDEAIKQWCESVSTPLFNLAIPRFTEGDFAELATPEARRAYTAREEKAFGDLAALRAQTPALLAQVNSELNALEPLVAGRHAIDTTDFILFPLLRSLTIVKGAAFGPQVSAYIERVSAQTGVALLSAQAK
>NZ_CP013940.1|WP_004386042.1|468539_468842_+|antibiotic-biosynthesis-monooxygenase
MTVPVVAIFVSKPGKEETLEQLFRGVIEKTHAEEGCIVYQLNRDTENPRRFVWTEEWESRELLQKHLQSAHIIHLFSELPKYIETSSVMMLDKLAGGPAK
>NZ_CP013940.1|WP_007774511.1|468901_469411_-|YbjP/YqhG-family-protein
MKHRLALVMLFFSASTLAQGNAQTPTQFLKSLYQSYAKGNEPVDFASKGEQQILSDRLLSLVEEDTRLSGGEVGFLDYDPICYCQDWDDLAVDKINVTNSDATHANATITFRPFRSSPDATTQSFALINEKGRWRIDDIMNGNGSLYKSLQESGQQLRADSTNNDTVSP

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Crispr_ID: NZ_CP013940_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_7

706826-706909

Orphan

Consensus_repeat	Method
GGCGGGTGCGCTGCGCTTACCCGCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_7

>merge|NZ_CP013940|7|706826-706909|CRISPRCasFinder
GGCGGGTGCGCTGCGCTTACCCGCCCTGGGGAATATACGGTTAAATAATTATGGTATGGCGGGTGCGCTGCGCTTACCCGCCCT

>NZ_CP013940|7|7|706826-706909|CRISPRCasFinder
GGCGGGTGCGCTGCGCTTACCCGCCCT	GGGGAATATACGGTTAAATAATTATGGTAT
GGCGGGTGCGCTGCGCTTACCCGCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_023898071.1\|707881_709249_-\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP013940.1\|WP_023898065.1\|702376_703582_-\|cysteine-desulfurase-CsdA	unknown	unknown	gnl\|CDD\|182799
NZ_CP013940.1\|WP_007777794.1\|705698_706799_+\|23S-rRNA-(cytidine(2498)-2'-O)-methyltransferase-RlmM	unknown	unknown	gnl\|CDD\|236971
NZ_CP013940.1\|WP_023898073.1\|712534_713380_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NZ_CP013940.1\|WP_004385390.1\|704347_705265_+\|glycine-cleavage-system-transcriptional-regulator-GcvA	unknown	unknown	gnl\|CDD\|182990
NZ_CP013940.1\|WP_004385385.1\|699916_701014_+\|murein-transglycosylase-A	unknown	unknown	gnl\|CDD\|236866
NZ_CP013940.1\|WP_007701398.1\|705310_705706_+\|DUF423-domain-containing-protein	unknown	unknown	gnl\|CDD\|182798
NZ_CP013940.1\|WP_004385389.1\|703774_704002_+\|YgdI/YgdR-family-lipoprotein	unknown	unknown	gnl\|CDD\|380215
NZ_CP013940.1\|WP_007777796.1\|701122_701932_+\|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA	unknown	unknown	gnl\|CDD\|185071
NZ_CP013940.1\|WP_007777781.1\|714634_714964_+\|YqcC-family-protein	unknown	unknown	gnl\|CDD\|377282
NZ_CP013940.1\|WP_023898075.1\|716245_719005_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP013940.1\|WP_007777783.1\|713449_713995_+\|SecY-interacting-protein	unknown	unknown	gnl\|CDD\|235324
NZ_CP013940.1\|WP_023898064.1\|698175_699429_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376
NZ_CP013940.1\|WP_032968395.1\|696616_697948_-\|amino-acid-N-acetyltransferase	unknown	unknown	gnl\|CDD\|235386
NZ_CP013940.1\|WP_023898070.1\|706994_707750_-\|flap-endonuclease-Xni	unknown	unknown	gnl\|CDD\|181896
NZ_CP013940.1\|WP_007777795.1\|701932_702376_-\|cysteine-desulfurase-sulfur-acceptor-subunit-CsdE	unknown	unknown	gnl\|CDD\|184980
NZ_CP013940.1\|WP_004388155.1\|711052_712417_-\|LOG-family-protein	unknown	unknown	gnl\|CDD\|378752
NZ_CP013940.1\|WP_007777780.1\|714960_715758_+\|tRNA-pseudouridine(65)-synthase-TruC	unknown	unknown	gnl\|CDD\|182971
NZ_CP013940.1\|WP_007777778.1\|715761_716211_+\|flavodoxin	unknown	unknown	gnl\|CDD\|181230
NZ_CP013940.1\|WP_007777788.1\|709315_710602_-\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_023898071.1\|707881_709249_-\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP013940.1\|WP_023898065.1\|702376_703582_-\|cysteine-desulfurase-CsdA	gnl\|CDD\|182799	PRK10874, PRK10874, cysteine desulfurase CsdA.	0
NZ_CP013940.1\|WP_007777794.1\|705698_706799_+\|23S-rRNA-(cytidine(2498)-2'-O)-methyltransferase-RlmM	gnl\|CDD\|236971	PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional.	0
NZ_CP013940.1\|WP_023898073.1\|712534_713380_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	0
NZ_CP013940.1\|WP_004385390.1\|704347_705265_+\|glycine-cleavage-system-transcriptional-regulator-GcvA	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	0
NZ_CP013940.1\|WP_004385385.1\|699916_701014_+\|murein-transglycosylase-A	gnl\|CDD\|236866	PRK11162, mltA, murein transglycosylase A; Provisional.	0
NZ_CP013940.1\|WP_007701398.1\|705310_705706_+\|DUF423-domain-containing-protein	gnl\|CDD\|182798	PRK10873, PRK10873, hypothetical protein; Provisional.	4.916e-76
NZ_CP013940.1\|WP_004385389.1\|703774_704002_+\|YgdI/YgdR-family-lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	2.3222e-33
NZ_CP013940.1\|WP_007777796.1\|701122_701932_+\|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA	gnl\|CDD\|185071	PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional.	0
NZ_CP013940.1\|WP_007777781.1\|714634_714964_+\|YqcC-family-protein	gnl\|CDD\|377282	pfam04287, DUF446, tRNA pseudouridine synthase C. This family is suggested to be the catalytic domain of tRNA pseudouridine synthase C by association. The structure has been solved for one member, as Structure 2HGK, which by inference is designated in this way.	5.59142e-41
NZ_CP013940.1\|WP_023898075.1\|716245_719005_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP013940.1\|WP_007777783.1\|713449_713995_+\|SecY-interacting-protein	gnl\|CDD\|235324	PRK04968, PRK04968, SecY interacting protein Syd; Provisional.	2.41376e-107
NZ_CP013940.1\|WP_023898064.1\|698175_699429_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	5.52989e-87
NZ_CP013940.1\|WP_032968395.1\|696616_697948_-\|amino-acid-N-acetyltransferase	gnl\|CDD\|235386	PRK05279, PRK05279, N-acetylglutamate synthase; Validated.	0
NZ_CP013940.1\|WP_023898070.1\|706994_707750_-\|flap-endonuclease-Xni	gnl\|CDD\|181896	PRK09482, PRK09482, flap endonuclease-like protein; Provisional.	8.55542e-173
NZ_CP013940.1\|WP_007777795.1\|701932_702376_-\|cysteine-desulfurase-sulfur-acceptor-subunit-CsdE	gnl\|CDD\|184980	PRK15019, PRK15019, cysteine desulfurase sulfur acceptor subunit CsdE.	6.76368e-77
NZ_CP013940.1\|WP_004388155.1\|711052_712417_-\|LOG-family-protein	gnl\|CDD\|378752	pfam11892, DUF3412, Domain of unknown function (DUF3412). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain is found associated with pfam03641.	2.05112e-83
NZ_CP013940.1\|WP_007777780.1\|714960_715758_+\|tRNA-pseudouridine(65)-synthase-TruC	gnl\|CDD\|182971	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional.	0
NZ_CP013940.1\|WP_007777778.1\|715761_716211_+\|flavodoxin	gnl\|CDD\|181230	PRK08105, PRK08105, flavodoxin; Provisional.	1.20924e-97
NZ_CP013940.1\|WP_007777788.1\|709315_710602_-\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	0

>NZ_CP013940.1|WP_007777794.1|705698_706799_+|23S-rRNA-(cytidine(2498)-2'-O)-methyltransferase-RlmM
MNKVILYCRQGFEKECAAEITDKAAQQGVFGFARVKENSAYVIFECYQPEEADKLARELPFSSLIFARQMFVAGDLLQDLPPEDRVTPVVGMLQGVVEKGGELRVEVADTNESKELMKFCRKFTVPLRAALRDAKILANFETPKRPVVHVFFIAPGCCYTGYSYTNNNSPFYMGIPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRNMWVASVDNGPMAQSLMDTGQVTWLREDGFKYRPTRTNITWMVCDMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSQNIASIQAQLDEHGINAQIQARQLYHDREEVTVHVRRWWAAVGGRRDER
>NZ_CP013940.1|WP_007701398.1|705310_705706_+|DUF423-domain-containing-protein
MTSRFMLIFASISGFVFVALGAFGAHVLRKTLGVAEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLHLWAFVTPVGGVSFLAGWILMLIGAVRLKRKGSVHE
>NZ_CP013940.1|WP_004385390.1|704347_705265_+|glycine-cleavage-system-transcriptional-regulator-GcvA
MSKRLPPLNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQSYFQDIKEIFSQLTEATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSSWPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGDKPLKAPEDLARHTLLHDASRRDWQTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAASEQEKFRFRYEQ
>NZ_CP013940.1|WP_004385389.1|703774_704002_+|YgdI/YgdR-family-lipoprotein
MNKLAAVVSACMMTFALSACSGPNYVMHTNDGRSIVTDGKPKTDDDTGMIKYKDANGNQQQINRTDVKEMVALEK
>NZ_CP013940.1|WP_023898065.1|702376_703582_-|cysteine-desulfurase-CsdA
MKAFSPAQFRAQFPSLRDAGVYLDSAATALKPQPVIDASQQFYSLSAGNVHRSQFAEAQRLTERYEAARDCVARLINAPDSRDIVWTRGTTESINLIAQCYARPRLKPGDEIIVSEAEHHANLVPWLMVAEQTGAKVVKLPLGTDLLPDLAALPALINERTFLLALGQMSNVTGGCPDLARAIGTAHAAGAVVVVDGAQGVVHCPPDVQQLDIDFYAFSGHKLYGPTGIGVLYGKTDLLAQMSPWLGGGKMVTEVSFDSFKTQPVPYRFEAGTPNVAGVIGLSAALAWLEDIDLAKAESYSRGLATLAEAELAKRPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAESGIALRAGQHCAQPLLAALGVSGTLRASFAPYNTQGDVEALIAAIDRALDILVD
>NZ_CP013940.1|WP_007777795.1|701932_702376_-|cysteine-desulfurase-sulfur-acceptor-subunit-CsdE
MTTAYLAGHPFGASITPDTLRQTFGPLTQWEDKYRQLILLGKQLPALPETLKQEAQEIPGCENRVWLGYEKRPDGGLHFYGDSEGRIVRGLLAVLLTAVEGKTPQELQENSPLALFDELGLRAQLSASRGQGLTALAQAVQDAARNA
>NZ_CP013940.1|WP_007777796.1|701122_701932_+|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA
MAVVITDAWRSRFGGTARLYGEAALQLFADAHVCVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDTVGQAKSEVMAERIRQINPECRITVVDDFVTVDNVAQYMNAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQTDPTQIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQADGSVCAMKSTAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARSAG
>NZ_CP013940.1|WP_004385385.1|699916_701014_+|murein-transglycosylase-A
MKGRWAKYLAAGAMIALLSACSSKPTDRGQQYKDGKFTQPFSLVNQPDAVGAPINAGDFSEQVAAIRSASPRLFGSQSSVYNAVQEWLRAGGDTRSLRQFGIDAWQMEGADNYGNVQFTGYYTPVVQARYTRQGEFQYPIYRMPPKRGRLPSRAEIYAGALSDNYVLAYSNSLMDNFIMDVQGSGYIDFGDGRPLNFFAYAGKNGHPYRSIGKVLIDRGEVKREDMSMQAIRHWGETHSEQEVRALLEENPSFVFFKPQNYAPVKGASGVPLIGRASVASDRSIIPAGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIGPDAGHRAGWYNHYGRVWVLKTAPGAGNVFSG
>NZ_CP013940.1|WP_023898064.1|698175_699429_+|N-acetylmuramoyl-L-alanine-amidase
MSGSSHLFSRRQLLQGAGAMWLLSVSQVGLAASGQVIAVRVWPASAYTRVTLESNRVLKYRQFALSNPERIVVDLEGVNLNAVLKGVSNQIRVDDPFIKSARVGQFDPKTVRMVFELKKNVTPHLFALAPVAEFRERLVIDLYPANGTNEQDPLLALLEDYNKGELDKQVPPATSGPQPGKAGRDRPIVIMIDPGHGGEDPGAIGKNKTREKDVVLQIARRLRALIEREANMKAFMTRNEDIFIPLKVRVAKAQKQRADLFVSIHADAFTSRAARGSSVFALSTKGATSTAAKYLAQTQNAADLVGGVSKSGDVYLDHTMFDMVQSLTISDSLKFGKEVLGRLGRVNKLHKNKVDQAGFAVLKAPDIPSILVETAFISNEEEERKLRTATFQQEVAESILAGIKAYFADGGTLARRG
>NZ_CP013940.1|WP_032968395.1|696616_697948_-|amino-acid-N-acetyltransferase
MVKERRTELVQGFRHSVPYINAHRGKTFVIMLGGEAIEHENFSSIVNDIGLLHSLGIRLVVVYGARPQIDANLAEHHHEPVYHKHTRVTDAKTLELVKQAAGLLQLDITARLSMSLGNTPLQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDAIHRQLDSGAIVLLGPVAVSVTGESFNLTSEEVATQLAIKLKAEKMIGFCSSQGVMSDDGDIISELFPNEAQARLETLEAAGDYHSGTVRFLRGAVKACRSGVRRCHLISYQEDGALLQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEIDKFTIIQRDNLTIACAALYPFPEEKIGEMACVAVHPDYRSSARGEVLLQRIATQAKQMGLSKLFVLTTRSIHWFQERGFAPVDIDLLPESKKQMYNYQRRSKVLMADLT
>NZ_CP013940.1|WP_023898070.1|706994_707750_-|flap-endonuclease-Xni
MPVHLLIVDALNLIRRIHAVQGTPCVDTCLHALEQLIGNSQPTHAVAVFDDEARAQGWRHQLLPDYKAGRPPMPDDLHHEMPALREAFTRRGVPCWHVEGNEADDLAATLAVKVAAAGHEATIVSTDKGYCQLLRPEIRIRDYFQKRWLDAPFIESEFGVSPGQLADFWGLAGISSSKIPGVAGIGPKSATQLINDFGTLEALYERLDEVPEKWRKKLEAHRESAFVCRAVATLKTDLQLDGNLQQLRLHG
>NZ_CP013940.1|WP_023898071.1|707881_709249_-|L-serine-ammonia-lyase
MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIAQNLLHKTTKVVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDAIPGFIQDVNTHSRLMLANGAHEVAFPVDQCMNFHADNLALHENGMRITALVGDDVLYSQTYYSIGGGFIVDEAHFGQTQTSAINVPYPYNTAADLQRHCRETGLSLSGLMMKNELALHSKEELEAHFSQVWDVMRAGIERGTTTEGVLPGKLRVPRRAAALRRMLVSHDKNDADPMNVVDWINMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGGSPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIASVKAVNAARMALRRTSEPRVCLDKVIETMFETGKDMNARYRETSRGGLAVKVVACD
>NZ_CP013940.1|WP_007777788.1|709315_710602_-|HAAAP-family-serine/threonine-permease
METTQTVNVATAAKSSAWRKTDTMWMLGLYGTAIGAGVLFLPINAGVGGLIPLIIMAILAFPMTFFAHRALTRFVLSGKNPGEDITEVVEEHFGVGAGKVITLLYFFAIYPILLMYSVAITNTVDSFITHQLGLASPPRAILSLILIVGMMTIVRFGEQMIVKAMSVLVFPFVAVLMLMACFLIPNWSGAALETLSFSHASTGNGLLMTLWLAIPVMVFSFNHSPIISAFAVAKREEYGAEAEKKCSRILAYAHIMMVVTVMFFVFSCVLSLSPENLAEAKAQNITILSYLANHFNVPVIAWVGPVIAIIAITKSFLGHYLGAREGFNGMVIKSLRSRGKTIEVSKLNRITALFMLITTWIVATLNPSILGMIETLGGPIIAMILFLMPMYAIARVPAMRKYSGHISNVFVTIMGLIAISAIFYSLFS
>NZ_CP013940.1|WP_004388155.1|711052_712417_-|LOG-family-protein
MITHISPLGSMDLLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSQTDNSKALLSRFENFDINVLRRERGVKLELINPPEEAFVDGQIIRSLQANLFAVLRDILFVNGQIHNAGRFQHLNLTDSIHITNLVFSILRNAKALHVGEAPNMVVCWGGHSINETEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKEGRFIGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPHNADQVLPLILTGPKESADYFRVLDDFIVNTLGEKARRHYRVIIDDPAEVAREMKKAMPLVKECRRETGDAYSFNWAIRISPDLQVPFEPTHENMANLKLYPDQPTEILAADLRRAFSGIVAGNVKEVGIRAIEKYGRYKIHGDAQMMKRMDDLLQGFVAQHRMKLPGSAYIPCYEICT
>NZ_CP013940.1|WP_023898073.1|712534_713380_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MTSYENHQALHGLTLGKSTDYRDVYDASLLQPVPRSLNRDPLGLRADALPFHGADIWTMYELSWLNRNGLPQVAIGQVEINATSVNLVESKSFKLYLNSFNQTRFDSLDAVRETLERDLRACAQGDVSVTLRRLEDVEGEPVARFSGDCIDNQDIEITDYEFDAALLSGAAGEETVEETLVSHLLKSNCLITHQPDWGSVQIRYRGPKICREKLLRYLVSFRHHNEFHEQCVERIFNDITRFCQPEQLSVYARYTRRGGLDINPWRSNCDFTPATGRLARQ
>NZ_CP013940.1|WP_007777783.1|713449_713995_+|SecY-interacting-protein
MQNEVQQALASFSARYCEAWRQQRGSLPVSEEYIGISSPCIVSTHPDAVEWQPQPFTPEDSLGAVEKALDIVIQPDAHAFYVSQYAGDMAARHDELALTLLQAWSQDDFRRVQENLIGHLVTQKRLKLSPTVFIATLDSELDVISLCNLTGEVVRETLGTRKRRVLAPSLSAFLNQLDPLV
>NZ_CP013940.1|WP_007777781.1|714634_714964_+|YqcC-family-protein
MERHQRVRQQLQRVEQVLRHHQQWQSAAPHSSAFESTQPFCMDTLEPYEWLQWVLIPRLHALLDAGAPLPQAFAVAPYYEVALEASYPARDAVLVTLVELDALFAGDDA
>NZ_CP013940.1|WP_007777780.1|714960_715758_+|tRNA-pseudouridine(65)-synthase-TruC
MSLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRRLAQQFEQHQIQKRYHAIVRGWLTDSAVLDYPLVEELDKIADKFSRQDKEPQPAVTHYHGLATTTQPVAVGRYDSVRYSLVEMLPQTGRKHQLRRHMAHLRHPIIGDSKHGDLRQNRAAAEHFGCNRLMLHASELTLTHPFTGAPLTIRAGLDDVWRQALAHFGWQAHFPAADGVEFPVTNPQDEGSLHSKGE
>NZ_CP013940.1|WP_007777778.1|715761_716211_+|flavodoxin
MASVGIFVGTMYGNSLLVAEEAQAILKKQGHDATVYEDPDITDWERYGDGYALIVTSTTGQGDLPDSIVPLYQAIKDQHGHQPTRRYGLIALGDSSYSHFCGGGKKFDALLQEHAAQRVGEVLYIDAAEYPEPETLSSPWVEQWSALLK
>NZ_CP013940.1|WP_023898075.1|716245_719005_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTFIIGLLLSVFFVVHRYHDLQRQLEDAGASIIEPLAVASEYGMSLQNKESVRQLVSVLHRRHSEIVRAISVYDRHNKLFVTSNYQLDPSELQLPDGASMPTSLGVTRRDDILILRTPVVSERYSPDESEISDAKLSANPLGYVALELDLKSVRLQQYQEIAISLLMMLICMACAVLFAWRLMRDVTAPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRTTLDEVVTLLAHSAHDKGLELTISVRHDVPDNVIGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWFHISLDLNPNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTVVYSPDLATLPQAHYDILLYAAPVTDREPLSMRHDQLARAATLTDCLILALPCHAQINAEMLKKEGASACLLKPVTATRLMPLLLEHCRLIHARELPEGDQSRMPMTVMAVDDNPANLKLIGALLEDMVQHVVLCESGHQAVERAMLQPFDIILMDIQMPDMDGIHACELIRKLPQQQHTPIIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEEKLRALLLRYQPGYAVPVAASAPVTTPLEGNPDATLDWSLALRQAANKPDLARDMLQMLLAFLPEVRNRVEEQLVGENPGGLTELIHKLHGSCGYSGVPRLKNLCQLIEQQLRSGVPASDLEPELLELLDEMDNVAREAQRISGI

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Crispr_ID: NZ_CP013940_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_8

758085-758202

Orphan

Consensus_repeat	Method
GTAGGGTGGGTAAGCGAAGCGCACCCACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_8

>merge|NZ_CP013940|8|758085-758202|CRISPRCasFinder
GTAGGGTGGGTAAGCGAAGCGCACCCACCATTCATGCCCTGCCATCACCAACGACATCCACCCTACGAAACAAAGGCGCTGAAATTATGTAGGGTGGGTAAGCGAAGCGCACCCACCA

>NZ_CP013940|8|8|758085-758202|CRISPRCasFinder
GTAGGGTGGGTAAGCGAAGCGCACCCACCA	TTCATGCCCTGCCATCACCAACGACATCCACCCTACGAAACAAAGGCGCTGAAATTAT
GTAGGGTGGGTAAGCGAAGCGCACCCACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_007777675.1\|765197_765965_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270342
NZ_CP013940.1\|WP_007870378.1\|764812_765025_-\|KTSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|379296
NZ_CP013940.1\|WP_032983230.1\|757752_757989_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226782
NZ_CP013940.1\|WP_007777680.1\|761727_762093_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_007777720.1\|755123_755534_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP013940.1\|WP_007777677.1\|763076_764744_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP013940.1\|WP_032983231.1\|758209_760771_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP013940.1\|WP_007777727.1\|751306_752299_+\|RNA-polymerase-sigma-factor-RpoS	unknown	unknown	gnl\|CDD\|235548
NZ_CP013940.1\|WP_007777725.1\|752724_754107_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP013940.1\|WP_023898088.1\|754215_755121_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP013940.1\|WP_007777681.1\|761339_761741_+\|BPSL0067-family-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_023898090.1\|756312_757743_+\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NZ_CP013940.1\|WP_007777670.1\|766789_767512_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP013940.1\|WP_007777726.1\|752353_752728_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226867
NZ_CP013940.1\|WP_032968382.1\|766038_766803_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP013940.1\|WP_007777679.1\|762165_762870_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP013940.1\|WP_004387895.1\|767626_768709_+\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|236754
NZ_CP013940.1\|WP_007777728.1\|750110_751247_+\|murein-hydrolase-activator-NlpD	unknown	unknown	gnl\|CDD\|236782
NZ_CP013940.1\|WP_007763606.1\|749356_749983_+\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
NZ_CP013940.1\|WP_071602995.1\|755705_756323_+\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|223241

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_007777675.1\|765197_765965_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.13999e-92
NZ_CP013940.1\|WP_007870378.1\|764812_765025_-\|KTSC-domain-containing-protein	gnl\|CDD\|379296	pfam13619, KTSC, KTSC domain. This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.	3.53376e-14
NZ_CP013940.1\|WP_032983230.1\|757752_757989_+\|hypothetical-protein	gnl\|CDD\|226782	COG4332, COG4332, Uncharacterized protein conserved in bacteria [Function unknown].	0.00118857
NZ_CP013940.1\|WP_007777720.1\|755123_755534_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.20091e-19
NZ_CP013940.1\|WP_007777677.1\|763076_764744_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	0
NZ_CP013940.1\|WP_032983231.1\|758209_760771_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP013940.1\|WP_007777727.1\|751306_752299_+\|RNA-polymerase-sigma-factor-RpoS	gnl\|CDD\|235548	PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.	0
NZ_CP013940.1\|WP_007777725.1\|752724_754107_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.74567e-46
NZ_CP013940.1\|WP_023898088.1\|754215_755121_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.08725e-58
NZ_CP013940.1\|WP_007777670.1\|766789_767512_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.45807e-153
NZ_CP013940.1\|WP_023898090.1\|756312_757743_+\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	2.00457e-169
NZ_CP013940.1\|WP_004387895.1\|767626_768709_+\|lytic-murein-transglycosylase-B	gnl\|CDD\|236754	PRK10760, PRK10760, murein hydrolase B; Provisional.	0
NZ_CP013940.1\|WP_007777726.1\|752353_752728_-\|hypothetical-protein	gnl\|CDD\|226867	COG4460, COG4460, Uncharacterized protein conserved in bacteria [Function unknown].	1.21053e-27
NZ_CP013940.1\|WP_032968382.1\|766038_766803_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.79636e-79
NZ_CP013940.1\|WP_007777679.1\|762165_762870_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.39017e-22
NZ_CP013940.1\|WP_007777728.1\|750110_751247_+\|murein-hydrolase-activator-NlpD	gnl\|CDD\|236782	PRK10871, nlpD, murein hydrolase activator NlpD.	0
NZ_CP013940.1\|WP_007763606.1\|749356_749983_+\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	4.01199e-131
NZ_CP013940.1\|WP_071602995.1\|755705_756323_+\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|223241	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism].	2.86509e-104

>NZ_CP013940.1|WP_032983230.1|757752_757989_+|hypothetical-protein
MICPRCADGTIEIMATSPVKGVWTVYQCQHCLYTWRDTEPLRRTSREHYPEAFRMTQADIDNAPEVPTVPPLLAEGKR
>NZ_CP013940.1|WP_023898090.1|756312_757743_+|UbiD-family-decarboxylase
MAFDDLRSFLQALEEQGQLLKISEEVQAEPDIAAAANATGRIGEGAPALWFDNIRGFTDARVAMNTIGSWPNHAISLGLPPATPVKQQIEEFIRRWDTFPVAPERRDNPPWAENRVDGDDINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDHFGKQNVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPVAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIATAPLTGFDVPWGSEVILEGVIEGRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRTKPIFESLYLGMPWTEIDYLIGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFDLPQVMWALSSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVKDLPETPQWVEKLTAMLANRKK
>NZ_CP013940.1|WP_071602995.1|755705_756323_+|UbiX-family-flavin-prenyltransferase
MRIIVGMTGATGAPLGVALLQALKAMPEVETHLVMSKWAKTTIELETPFSWQDVAGLADVVHSPADQAATISSGSFRTDGMVIIPCSMKTLAGIRAGYADGLVGRAADVVLKENRKLVLVPRETPLSTIHLENLLALSRMDVAIVPPMPAWYNHPATIDDIINHIVARVLDQFGLDSRNARRWQGLNPAKTADTHSSRGGNTHGV
>NZ_CP013940.1|WP_007777720.1|755123_755534_-|MarR-family-transcriptional-regulator
MAVNQQAFHLLRQLFQQHTAQWQLALPELTKPQYAVLRSIAENPGIEQVALIEAAVSTKATLAEMLSRMESRGLVRRESAPEDKRRRFIYLTPEGEALLHASIPKGDAVDEAFLGKLNAEERALFATLITRMIDKP
>NZ_CP013940.1|WP_023898088.1|754215_755121_+|LysR-family-transcriptional-regulator
MLNLSRLAMFVAVVDAKSFTGAAAALGQTKAVVSFNIRQLESELGVTLLLRSTRRLTLTDAGERLYQRSLLLLKDAGALLEDVQASHDGFSGELRVTTTPEYATHVVGPALAAFSRAHPALRIRHFSSSQHADLISERVDVAIRLGTLQDSAYRAALISRFDIFPVASPAWLERHPISTPEALSQADWLLHTRLASPLRWELTGPHNETLWFEITRPPVIAADGAGALMTFALEGCGVALLPAWLVKTALEEESLVRLLPAYRFPAQGVYAVYPDARHVSGKVRGFIDFLRAREAQAAAGK
>NZ_CP013940.1|WP_007777725.1|752724_754107_-|MFS-transporter
MTYRNRVTLIYLLGFFLDLINMFIAAVAFPAIGDALHASVTQLSWISNGYIAGLTVVIPLSAWLTQRLGARRLFLLSLALFTVATAACGLATSLESLIFWRVIQGAGGGVLIPVGQALAWQLFAKHERAGLSSAVMLTGLLAPALSPVAGGIIVQTAGWQWVFLASLPLSLLALVMAFCWLRPDAPARDKRPLDTISVITGAGGLLLVLFGLNGLSEKTAPWLAAAGLASGIVLITLMLRRCRRHPAPLLRVHLLGEPLMRFSMLVYQCVPGMFIGVNVVGMFWLQTVAGLSPAASGALMVPWSVASFMAISATARLFNRLGPRPLISLGCLLQAGGIVLLTQTDAQSPWALLVTAFFLMGAGGSLCSSTAQSSAFLHTANADMPDASAVWNINRQLSFCFGVTLVSLALNALLTWLSPLTAWQTTFTLAAALTLVPLIFAWRLPRQAVTLSFVEEKEKR
>NZ_CP013940.1|WP_007777726.1|752353_752728_-|hypothetical-protein
MNRWFKEVLDAHVAIERWLGRGEGDVQALLGRFSPDYSMIPLNGAPLDRHMLNAFFTGAGGSKPGLEIQMDALSVIAEWPDGAVVGYRETQRIAQESTVRWSTVVFELSQGEPRWRHLHETRQA
>NZ_CP013940.1|WP_007777727.1|751306_752299_+|RNA-polymerase-sigma-factor-RpoS
MNQNTLKVHDLNEDAEFDENGVEAFDEKALVEEEPSDNDLAEEELLSQGSTQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRSDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKDNGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQGQGLNIEALFRE
>NZ_CP013940.1|WP_007777728.1|750110_751247_+|murein-hydrolase-activator-NlpD
MSAGSPTFTARRVAALSLISLCLAACNSNNSSAPAPVSSVGGSTSSAEASSGAGGGMIMPPSNISTQASQPQIQPAPVQPQISQPRQAQAIPEEPVQTQNGRIVYNRKYGNIPKGSYAGGSTYTVKRGDTLFYIAWITGNDFRDLAQRNHIEAPYSLNVGQTLQVGNASGTPITGGNAITQADASAQGIVSKPAQNTSTVVASKPTIIYSEDSGEQSANKMLPGNVSSGAVVAPSTAPAVSTQEPTVSSTTNSAPVATWRWPTEGNVIENFSAAEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSSGTSSTRLHFEIRYKGKSVNPLRYLPQR
>NZ_CP013940.1|WP_007763606.1|749356_749983_+|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MVNNRVQTLLNQLRAQGIKDERVLEALSRVPREKFVDEAFEHKAWENVALPIGSGQTISQPYMVARMTELLTLTPASRVLEIGTGSGYQTAILAHLVHHVCSVERIKSLQWHARRRLKQLDLHNISTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALLSQLDEGGILVLPVGDEQQVLKRVRRRGSEFIIDTVEAVRFVPLVKGELA
>NZ_CP013940.1|WP_032983231.1|758209_760771_-|DNA-mismatch-repair-protein-MutS
MSTSETFDAHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGVPHHAVENYLAKLVNLGESVAICEQIGDPATSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRVSEPQDRETMAAELQRTNPAELLYAEDFAEMSLIEGRRGLRRRPLWEFELDTARQQLNLQFGTRDLVGFGVENAPRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDGIIMDAATRRNLEITQNLAGGMENTLASVLDCTVTPMGSRMLKRWLHMPVRDAAVLRHRQQAIAALMEYSADIQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPTLNTLLGDIDAEYVQTLREQMGDFAELRDLLERAIIEAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEIREREKLGIDTLKVGFNAVHGYFIQVSRGQSHMVPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYDELFDLLLPHLAELQKSAAALAELDVLTNLAERADTLNYHCPTLTDKPGIRLVEGRHPVVERVLNEPFIANPLSLSPQRRMLIITGPNMGGKSTYMRQTALIVLMAYIGSFVPAEQAEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDEIGRGTSTYDGLSLAWACAESLANRIKALTLFATHYFELTQLPEKMEGVANVHLDAIEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESLSGNAAATQVDGTQMSLLAAAEETSPAVEALENLDPDSLSPRQALEWIYRLKSLV
>NZ_CP013940.1|WP_007777681.1|761339_761741_+|BPSL0067-family-protein
MAYIANTPSAYVGQSVGNGQCVAYTQKAANMPRTVAWRRGALVKGNMSIAPGTAIATFDGNGRYGNHTDGSSHAAIYLGQDASGIVVLDQWMTHRTLPNGQRVATPHAVSKRIIRFHKAPRAENNGDNYYVVE
>NZ_CP013940.1|WP_007777680.1|761727_762093_+|hypothetical-protein
MLWSKTLLLSAGLFLSVTGAQATVTLCPQYPTAQDKTHVLDDASLFVGPPEGLVDLMPDNDSDTVWTLPDYQDEAKKSKTSLYFVCLYKNTKQTVNLIVPATAKKCSVAYDKNSKLIAACE
>NZ_CP013940.1|WP_007777679.1|762165_762870_-|GNAT-family-N-acetyltransferase
MKELNSFGQYVGQPVTEWTPRELPQKKMFAGHFCHLEPVSVRHALALHHAWHSIDDTRDWTYLTDERPPTLTATEYYLRRLEAAPDAWYFTVLENISGQPTGTLCLMNVDKTHGVIEIGNVNWSPAMKRTHYGTEAIYLLLAYVFEELKYRRCEWKTDELNTPAIQAAQRLGFIYEGTFRECQVRKGRNSNVNWYSIVEAEWPHHAKTLRAWLRPENFNDRGRQIKHLEEFKDR
>NZ_CP013940.1|WP_007777677.1|763076_764744_+|HAMP-domain-containing-protein
MIKNIKVVSGIIIILLTFTVLQMVTGSLFYSAVNNDRNNFQNANLLNFQQEQLGDSFQTLVKTRVTVNRVAIRFLKNQRDPASLAAINKLLATASTSLGKAEKHFALYKDSPRLKGQDEATASKIAEKYQALHDTLQASIGYLSANNYEAYGNLDAQKAQDEMEEIYTTWRAQNTTLLQAAAQENQQSFTGMLWTLGVIAVIVVLAIATIWQGLRHLLLGPLRDAMEHIRAIAGGDLTRQIAVGGRNEMGQLAASLQEMQQALAGTVTAVRDSSESIYTGAGEISAGSNDLSARTEQQAASLEETAASMEQLTATVKQNSDNARQASQLAKNASETADKGGRVVDNVVQTMKSIAESSQQIAHITSVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSANAAKEIKALIENSVNRVDTGSGQVQEAGDTMKEIVQAVTRVTDIMGEIASASDEQSRGIEQVSLAVSQMDSVTQQNAALVQESAAAAAALEDQAEQLRQAVAAFKVSRGVVSTPARTGAAPLARMEPVKPALATSAGSDNWETF
>NZ_CP013940.1|WP_007870378.1|764812_765025_-|KTSC-domain-containing-protein
MKRHPVQSRTFKSAGYDPTCSIMEIEYANGRVEQFLGVPAKTWQTFLMSNEKESWFNSNVKSSFFKVSVS
>NZ_CP013940.1|WP_007777675.1|765197_765965_+|basic-amino-acid-ABC-transporter-substrate-binding-protein
MVKSLLKAGLLMAALAGSAFAAQETYIVGAGGTYRPFEFENSQKQLEGFDIDIIKAIAKAENFNVKLVNTPWEGIFATLGSGDRDIIISGITITDKRKQMVDFSAPYFPAEQSIVVPADSKVDSLAALKNEKVGVVNSSTGDIVVSDALGKNNTAIKRFDNTPLMLQELFEDGVSTAVGDVGVVKYYIKQHPEKQFKLVPDAKFERQYFGIAVAKGNDELRDKINAGLAKIVADGTYAKIYKAWFDDNVPTLPAQ
>NZ_CP013940.1|WP_032968382.1|766038_766803_+|amino-acid-ABC-transporter-permease
MSGFHWEIIQEYGPLFMQGAWMTIKCTIICVILGTLWGLTLGLGRMAHAEHGPWKYVLRYLVQFPVRFYVSAFRGTPLFVQIMVVHFALVPLFINPRDGWLVESGLMTSEFARMLRSDYGAFLSCIVAITLNAGAYVSEIFRAGIQSIDRGQMEASRALGMPWWKTMRKVILPQAFRRILPPLGNNAIAIVKDSSLASAIGLADLAYAARTVSGAYATYWEPYLTISLVYWVITFLLSQLVARLEKRFGKSDSR
>NZ_CP013940.1|WP_007777670.1|766789_767512_+|amino-acid-ABC-transporter-ATP-binding-protein
MIHVKNLHKHFGASHVLRGINCDIKPEEVVCVIGPSGSGKSTFLRCLNALETAEEGEILVNGFAVHDRNADVNQLRAGVGMVFQRFNLFPHMTVLENLIMAPMSLKGMKRAQAVTLAEGLLAKVGLSDKRDAWPASLSGGQQQRVAIARALAMNPSVMLFDEPTSALDPELVGEVLAVMKNLAEEGMTMVIVTHEMGFAREVADRVIFIDSGVIQEEGPPAQLFTAPQNPRTAAFLSKVL
>NZ_CP013940.1|WP_004387895.1|767626_768709_+|lytic-murein-transglycosylase-B
MLKRRYVALLPLMMALAACSSKPKSQSATTQTAGASQGGFLLQPQHDMLLPTGDFTGNPAAENFINMMVSKHGFNRQQLQEVFSQTKRLDYVLRLMDRQAPTTQPAPGPNGAWLRYRNKFITPDNVQNGVAFWNQYQDALNRAWQVYGVPPEIVVGIIGVETRWGRVMGKTRIIDALATLAFNYPRRADYFAGELETFLLMSRDEGDDPLALKGSFAGAMGYGQFMPSSYKEYAVDFNGDGHINLWDPEDAIGSVAHYFQQHGWVKGDLVAVPANGQAPQLENGFKTKYSVGQLAAAGLTPQQPLGDHTEASLLRLDIGSGYQYWYGLPNFYAITRYNHSTHYAMAVWQLGQAVALARVQ

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Crispr_ID: NZ_CP013940_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_9

1015213-1015336

Orphan

Consensus_repeat	Method
GTTAACGGCGGGTGCGCAGGCTTACCCGCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_9

>merge|NZ_CP013940|9|1015213-1015336|CRISPRCasFinder
GTTAACGGCGGGTGCGCAGGCTTACCCGCCCTGCATTGAAGTGCTTTTTCGTAGGTTTTGTAGGGTGGGTAAGCGCAGCGCACCCACCCGACGTTAACGGCGGGTGCGCAGGCTTACCCGCCCT

>NZ_CP013940|9|9|1015213-1015336|CRISPRCasFinder
GTTAACGGCGGGTGCGCAGGCTTACCCGCCCT	GCATTGAAGTGCTTTTTCGTAGGTTTTGTAGGGTGGGTAAGCGCAGCGCACCCACCCGAC
GTTAACGGCGGGTGCGCAGGCTTACCCGCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_007777111.1\|1019579_1020539_-\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236806
NZ_CP013940.1\|WP_023898233.1\|1023518_1024388_+\|isochorismatase	unknown	unknown	gnl\|CDD\|224452
NZ_CP013940.1\|WP_012124074.1\|1015417_1016209_-\|iron-enterobactin-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182336
NZ_CP013940.1\|WP_038882260.1\|1012929_1015209_+\|NADP-dependent-oxaloacetate-decarboxylating-malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235976
NZ_CP013940.1\|WP_032968344.1\|1008992_1009490_+\|YbjP/YqhG-family-protein	unknown	unknown	gnl\|CDD\|372360
NZ_CP013940.1\|WP_012124082.1\|1025137_1025551_+\|proofreading-thioesterase-EntH	unknown	unknown	gnl\|CDD\|182337
NZ_CP013940.1\|WP_032970457.1\|1017194_1018202_-\|Fe(3+)-siderophore-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182464
NZ_CP013940.1\|WP_032986327.1\|1020727_1021894_+\|isochorismate-synthase-EntC	unknown	unknown	gnl\|CDD\|184977
NZ_CP013940.1\|WP_007777102.1\|1024384_1025137_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	unknown	unknown	gnl\|CDD\|236190
NZ_CP013940.1\|WP_023898223.1\|1009682_1011677_-\|transketolase	unknown	unknown	gnl\|CDD\|183723
NZ_CP013940.1\|WP_100207200.1\|1001965_1002025_+\|protein-YpfM	unknown	unknown	unknown
NZ_CP013940.1\|WP_023898231.1\|1021904_1023509_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	unknown	unknown	gnl\|CDD\|236803
NZ_CP013940.1\|WP_032983623.1\|1016205_1017198_-\|iron-enterobactin-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182463
NZ_CP013940.1\|WP_023898228.1\|1018309_1019554_+\|enterobactin-transporter-EntS	unknown	unknown	gnl\|CDD\|236700
NZ_CP013940.1\|WP_023898220.1\|1002132_1005249_-\|multidrug-efflux-RND-transporter-permease-AcrD	unknown	unknown	gnl\|CDD\|182544
NZ_CP013940.1\|WP_007777138.1\|1007457_1008402_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_007893829.1\|1011697_1012648_-\|transaldolase	unknown	unknown	gnl\|CDD\|183458
NZ_CP013940.1\|WP_032968345.1\|1008624_1008993_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_023898221.1\|1006338_1007382_+\|DUF1176-domain-containing-protein	unknown	unknown	gnl\|CDD\|369032
NZ_CP013940.1\|WP_007777142.1\|1005632_1006208_+\|GDP-mannose-pyrophosphatase-NudK	unknown	unknown	gnl\|CDD\|184971

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_007777111.1\|1019579_1020539_-\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236806	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional.	0
NZ_CP013940.1\|WP_023898233.1\|1023518_1024388_+\|isochorismatase	gnl\|CDD\|224452	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism].	1.55531e-124
NZ_CP013940.1\|WP_012124074.1\|1015417_1016209_-\|iron-enterobactin-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182336	PRK10253, PRK10253, iron-enterobactin ABC transporter ATP-binding protein.	3.74343e-166
NZ_CP013940.1\|WP_038882260.1\|1012929_1015209_+\|NADP-dependent-oxaloacetate-decarboxylating-malate-dehydrogenase	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_CP013940.1\|WP_032968344.1\|1008992_1009490_+\|YbjP/YqhG-family-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	6.57467e-31
NZ_CP013940.1\|WP_012124082.1\|1025137_1025551_+\|proofreading-thioesterase-EntH	gnl\|CDD\|182337	PRK10254, PRK10254, proofreading thioesterase EntH.	6.64474e-92
NZ_CP013940.1\|WP_032970457.1\|1017194_1018202_-\|Fe(3+)-siderophore-ABC-transporter-permease	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	1.01574e-162
NZ_CP013940.1\|WP_032986327.1\|1020727_1021894_+\|isochorismate-synthase-EntC	gnl\|CDD\|184977	PRK15016, PRK15016, isochorismate synthase EntC; Provisional.	0
NZ_CP013940.1\|WP_023898223.1\|1009682_1011677_-\|transketolase	gnl\|CDD\|183723	PRK12753, PRK12753, transketolase; Reviewed.	0
NZ_CP013940.1\|WP_023898231.1\|1021904_1023509_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	gnl\|CDD\|236803	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase.	0
NZ_CP013940.1\|WP_032983623.1\|1016205_1017198_-\|iron-enterobactin-ABC-transporter-permease	gnl\|CDD\|182463	PRK10440, PRK10440, iron-enterobactin ABC transporter permease.	1.24507e-179
NZ_CP013940.1\|WP_023898228.1\|1018309_1019554_+\|enterobactin-transporter-EntS	gnl\|CDD\|236700	PRK10489, PRK10489, enterobactin transporter EntS.	0
NZ_CP013940.1\|WP_023898220.1\|1002132_1005249_-\|multidrug-efflux-RND-transporter-permease-AcrD	gnl\|CDD\|182544	PRK10555, PRK10555, multidrug efflux RND transporter permease AcrD.	0
NZ_CP013940.1\|WP_007777102.1\|1024384_1025137_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	gnl\|CDD\|236190	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated.	5.27924e-166
NZ_CP013940.1\|WP_007893829.1\|1011697_1012648_-\|transaldolase	gnl\|CDD\|183458	PRK12346, PRK12346, transaldolase A; Provisional.	0
NZ_CP013940.1\|WP_023898221.1\|1006338_1007382_+\|DUF1176-domain-containing-protein	gnl\|CDD\|369032	pfam06674, DUF1176, Protein of unknown function (DUF1176). This family consists of several hypothetical bacterial proteins of around 340 residues in length. Members of this family contain six highly conserved cysteine residues. The function of this family is unknown.	3.72516e-127
NZ_CP013940.1\|WP_007777142.1\|1005632_1006208_+\|GDP-mannose-pyrophosphatase-NudK	gnl\|CDD\|184971	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.	2.79453e-120

>NZ_CP013940.1|WP_038882260.1|1012929_1015209_+|NADP-dependent-oxaloacetate-decarboxylating-malate-dehydrogenase
MDEQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVAAPCLEIAADPLAAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFAGIDVFDIEIDEHDPDKVVDVVAALEPTFGGINLEDIKAPECFYIEKKLRERMNIPVFHDDQHGTAIICTAAVLNGLRVVQKNISDVRLVVSGAGASAIACMNLLVALGMQKHNIVVCDSKGVIYKGREENMAETKAAYAIDDNGKRTLGEVIEGADIFLGCSGPKVMTQEMVKKMADSPLILALANPEPEIMPPLAKAVRPDAIICTGRSDFPNQVNNVLCFPFIFRGALDVGATAINEEMKLAAVHAIAELAHAEQSEVVASAYEDQELSFGPDYIIPKPFDPRLIVTIAPAVAKAAMDSGVATRPIEDFDAYRDKLTEFVYKTNLFMKPVFNQARKDPKRVVLTEGEEPRVLHATQELITLGLAKPVLVGRPGVIEMRLKKLGLQIEAGKDFEIVNNESDPRFKEYWNEYYSIMKRRGITQEQAQRAVIGNSTVIGAIMVHRGEADAMICGTIGDYHEHFSVVQQIFGYRDGVKAAGAMNALLLPSGNTFIADMYVNDDPTPEQLAEITVMAAETVRRFGIEPKVALLSHSNFGSSDSPAASKMRETLQLVRERAPDLMIDGEMHGDAALVESIRNDRMPDSPLKGSANILIMPNVEAARISYNLLRVSSSEGVTVGPVLMGVAKPVHVLTPIASVRRIVNMVALAVVEAQTNPL
>NZ_CP013940.1|WP_007893829.1|1011697_1012648_-|transaldolase
MNQLDGIKQFTTVVADSGDIESIRNYQPQDATTNPSLLLKAASLEHYQHLFTDALEYGKKRGSTQKEQVAEASDKLAVNVGAEILKSIPGRVSTEVDARLSFDKEKSIAKARRLVELYQEQGIDKSRILIKLASTWEGIRAAEELEKEGIHCNLTLLFSFAQARACAEAGVYLISPFVGRIYDWYNTRKPMDPYVVDEDPGVKSVRNIYDYYKQHNYQTIVMGASFRRTEQILALAGCDRLTISPNLLKELQESDAPVARKLIPASQGFNRPQPMTEAEFRWEHNQDAMAVEKLAEGIRQFAVDQRSLEDLLAAKL
>NZ_CP013940.1|WP_023898223.1|1009682_1011677_-|transketolase
MSRQLLANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWNDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLSGYDLPMEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAEKTLAAQFNRPGHEIVDHNTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVVHEIDGHDPEAIKRAIEEAKQVTDKPSLIICRTVIGFGSPNKAGKEESHGAALGEEEVALTRKQLGWNYPPFEIPDEVYKGWDAKEKGRQVEASWNEKFAAYQEAYPELAAEFNRRMGGEMPENWQQVTQEYIEKLQAEPAKIASRKASQNALNVYGPVLPELLGGSADLAPSNLTIWSGSTSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQAVEQLASLRLTPNFSTWRPCDQVETAVAWKAAIERHNGPTALILSRQNLAQIERSPQQLKDVARGGYILKDAGGKPDLILIATGSEVEIAVQAAEKLRGDGVAVRVVSLPSTDVFDAQDEAYRESVLPSDVSARVAVEAGIADYWYKYVGLKGAIVGMTGYGESAPAEKLFPYFGFTVENVVEKARNVLGK
>NZ_CP013940.1|WP_032968344.1|1008992_1009490_+|YbjP/YqhG-family-protein
MRTAIVLCAFLLSACAVKPDQSAPTRVHSFYSTYLMSLTSSDNQYSPSDLREYVSADTLKRLEDIESISEQDLIGSDYFAYAQDYDPSWISALTVGAARPFMGGEVMPVWIGREGGKKLELEVFVRRESDIWKIYRVRDVTDNYEHPIFNAGAITRAKSAAEGGL
>NZ_CP013940.1|WP_032968345.1|1008624_1008993_+|hypothetical-protein
MNWNKDVAISHLRSRALGHSHNECATFTREAIAAGGIRLERTLNAKDYGPALLRAGFHEVPPGSTLLSGDVAVIQPYPGGNPSGHMTMYDGTQWISDFRQRSMYPGPGYRAAQPAFKIYRMN
>NZ_CP013940.1|WP_007777138.1|1007457_1008402_+|hypothetical-protein
MAYTQGLRAVLGLALAGLALSVSAAMTSQDERDANALVARWNEFKNHPSAQAGAALYGEQVSWYGKALARDVVIQENAAFVQKHPHYAQTIISNITLTEQDGQPLAVQATFVKQAGLEPQTPRNYPAQLTLTKQAAGWRISEETDWITEANRQKTRDYRLAGGRFNGTAKSYAWLTAHDPKTNGVCDESGDCECQLWNSDPAINPASIPSCIGGGVETLSHLDDSGRDRALIYPEWWSSAWRATYLYDVQQQQWVKAIPSFSMNLNVQEDVDGMSLIARDPQHPGQVIVAQAQWDEKTEDIVINKSAETLKVLK
>NZ_CP013940.1|WP_023898221.1|1006338_1007382_+|DUF1176-domain-containing-protein
MLFRLLSLLSCSLLLASPLYAAPAQKIFSDWQVTCNNQNFCTARNVGNHQELVMTLSRSAGAKTDASLRIETGKPEAAVSKAPPLAPRLLLDGKTLVPAGSKWRAAPRRLLTDDPATIIDFLDQIKESSVITLKDGPGRLSLDGLKAALLFIDAQQKRVGSETAWIKKGNNPPLSVPPAPAIRGVKITNPTPTPLSHDELNELLDYGTWRMTNSQCSLDPMRREVRISALSDDTALMIISCEAGAYNTVDLAWLVSRQKPFASRMVRLRLPFVPADKEQELELMNASFDEKTKELITLSKGRGLGDCGVATRWRFDGQRFRLVRYAEEPSCDNWHGPDAWPTLWVTQ
>NZ_CP013940.1|WP_007777142.1|1005632_1006208_+|GDP-mannose-pyrophosphatase-NudK
MSLNVELIKDKILSENYFVLRNITYDLTRKDGEVVRHKREVYDRGNGAAVLLYNREKKSVVLIRQFRVATWVNGNPDGMLIEACAGLLDDDEPEVCIRKEAIEETGYRVNAAEKVFELYTSPGGVTELIHLFIAEYDDASRANEGGGVEDEEIEVLEMPFSEALEKVKQGVIRDAKTVLLLQHLQLRGIMD
>NZ_CP013940.1|WP_023898220.1|1002132_1005249_-|multidrug-efflux-RND-transporter-permease-AcrD
MANFFIDRPIFAWVLAILICLTGTLAIFSLPVEQYPELAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLNFKAGTDPDEAVQQVQNQLQSALRKLPQAVQTQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQEPLSRINGVGDIDAYGSQYAMRIWLDPDKLTSFQLTTADVVAAIKSQNSQIAVGQLGGTPSVDNQALNATINAQSLLQTPEQFRAITLRVNQDGSTVTLGDVATVEMGAEKYDYLSRYNGKAASGLGVKLASGANEMETAQLVLNRLDELSHYFPHGLEYKVAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYSFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLLKPLKKGEHHGSRGFFSWFNRTFERSALRYESAVGKILQRSLRWILLYALLLGGMVFLFLRLPTSFLPQEDRGMFITSVQLPSGSPQQQTLKVVQHVERYFFEKEKANVTSVFATVGSGPGGNGQNVARMFVRLKPWEERDPDTGSADAIIERATQAFRHIKEARVFASSPPAISGLGSSAGFDMELQDHAGLGHDALMQARDRLLDMASQEPALTRVRHNGLDDSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQSAAKYRMLPEDITRWYVRNQAGTMVPFSAFATSRWETGSPRLERYNGYSALEIVGEAAPGVSTGTAMDIMEKLVSQLPTGFGLEWTAMSYQERLSGSQAPALYALSLLVVFLCLAALYESWTVPFSVMLVVPLGVIGALLATWLRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNSKGHELIAATLDACRQRLRPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVMGGMISATLLAVFFVPLFFVLIRRRFPLKPAPEE
>NZ_CP013940.1|WP_100207200.1|1001965_1002025_+|protein-YpfM
MIEHELGNWKDFIEAMLRK
>NZ_CP013940.1|WP_012124074.1|1015417_1016209_-|iron-enterobactin-ABC-transporter-ATP-binding-protein
MTMTSRLTGEALTLGYGDFRVADGLNVAIPDGKFTAIIGPNGCGKSTLLRTLSRLMKPLGGQVRLDGQAIQHFATKEVARRIGLLAQNASAPGDITVAELVARGRYPHQPLFTRWRDEDERAVQKAMAATGVTALADQSVDTLSGGQRQRAWIAMVLAQETSILLLDEPTTWLDISHQIDLLELLCTLNREQGYTLAAVLHDLNQACRYANHLIALRDGKIIAEGAPSEIVDAALIEAIYGLRCMIIEDPVAGTPLVVPLGRR
>NZ_CP013940.1|WP_032983623.1|1016205_1017198_-|iron-enterobactin-ABC-transporter-permease
MKSVSPRLWLFCLLMLSLCTGLSLWALTQGAVTLEARKVLDALTGLAPRNVSLIVTEWRLPRVAMALLLGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLAGQHQSAIAFAAIAGGTLTAFVVWLLAWRNGIDTFRLIIIGIGVRAMLVAFNTWLLLQASLETALSAGLWNAGSLNGMTWGKTLPAAPLLVLALLASALLVRRMRLLEMGDDSACALGVAVERSRLLLMLTGVVLTAGATAMAGPISFVALVAPHIARRLSGTARFGLTQAALCGALLLLAADLCAQYLFTPYQLPVGTVTVCLGGIYLIALLIQESRRR
>NZ_CP013940.1|WP_032970457.1|1017194_1018202_-|Fe(3+)-siderophore-ABC-transporter-permease
MSASRLSSRVVVLGSLSLLLLLMVALSLLVGAKSLPFSLVMDALTGTCRDADCTIVLDARLPRTLAGIVAGLSLGLAGALMQTLTRNPLADPGLLGVNSGASFAIVLGAALWGVSEPLHILALALCGALAATLVVAFTGSAGGGQLSPVRLTLAGVALAAVLEGLSGGIALLNPVVYDQLRFWQAGSLDIRTLTTLKAIAPVVLTGAVIALLLGRALNSLSMGADTATALGSRVARTQVFGLIAITLLCASATAVVGPIAFIGLMMPHLARWLVGADHRWSLPVTLLATPSLLLLADIIGRLVVPGELRVSVVSAFIGAPALIYLVRQRRGGASL
>NZ_CP013940.1|WP_023898228.1|1018309_1019554_+|enterobactin-transporter-EntS
MNRHSLLLNLSLLKTHPAYRAVFLARFISILGLGLLGVAVPVQIQTLTGSPFQVGLAVTLTGAAMFIGLMTGGVLADRYERKTLILLARSTCGLGFIGLWINAMLPAPSVIAIYALGLWDGFFGAIGVTALLAATPAIVGRENLMQAGAITMLTVRLGSVISPLLGGVLLAWGGVAWNYALAALGTFLTLLPLLTLPALPAPQMQRQHPLRALADGLRFLAASPVVGGVALIGALLTMASAVRVLYPALANHWQMTSGEIGVLYAAVPLGAALGALTSGGLAHAPRPGRTLLASSVLALAAVSVFSLMPFWPLAFICLTLFGYLSGVSSLIQYQLIQTRTPDHMLGRINGLWTAQNVTGDAIGAAALGGMGAWLSPVSAASVGGIGLAIVTLALALLLAELRRLRQPPPEPAPH
>NZ_CP013940.1|WP_007777111.1|1019579_1020539_-|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein
MTFTSALRAAFAASLLLLGISSVSQAAAWPRQVTDSRGVHTLEKAPQRIVSTSVTLTGSLLAIDAPVVASGATSPGNRVADDQGFLRQWGDIAKARHVERLYIGEPNAEAVAAQMPDLILVSATGGDSAQALYEQFSAIAPTLIINYDDKSWQALLTQLGEITGHEKQAAERIAQFDQQLAQAKAQMKLPPQPVSALVYNPAAHGANLWTAESAQGKLLGQLGFTLAPPPAAHGLTSMGKRHDIIQLGGENLAAGLNGETLFLFAADDKDAAALMRDPLLAHLPAVENKRVYALGTETFRLDYYSASLLLKRLEALFKQ
>NZ_CP013940.1|WP_032986327.1|1020727_1021894_+|isochorismate-synthase-EntC
MDTSLAGERCDAAATLSSDSFFYMSPYRSFTTRGCFTRLETPAADGAERYSVFQTALRNAFDRARRQGIARPIVVGAIPFDTRKPSALFIPESYSETARGGYSLIENSAAPRVLSRKPLPDEETFMAMVARAAALTATPAVSKIVLSRLIDITTEQKPDSLALLARLVAQNPASFNFHVPLPDGGALLGASPELLLRKDGNTFSSLPLAGSARRHADAAQDKSAGQALLCSAKDRHEHELVTQAMRDVLAPRSQRLAMPGAPELITTPTLWHLATPVEGETRFADDNALSLACLLHPTPALSGYPHEAAKAYIAELEPFDRELFGGIVGWCDADGNGEWAVTIRCARLRENQVRLFAGAGIVPASDPASEWRETGVKLSTMLHVLGLH
>NZ_CP013940.1|WP_023898231.1|1021904_1023509_+|(2,3-dihydroxybenzoyl)adenylate-synthase
MTIPYTRWPDDLAVRYRARGYWLDLPLTDILSRHAQSAATALIDGERRYSYRELDAAATRLAGALARRGLQRGDTALVQLGNVAEFYIVFFALLKIGVAPVNALFSHQRTELDAYARQIAPALLIADREHALFSDDAYITALQAQHSSLRMTLLRGDGLEALISETEADFTPTPSAADEVAFFQLSGGSTGTPKLIPRTHNDYYYSIRRSVEICEFSRETRYLCALPAAHNYPLSSPGALGVFFAEGCVVLARDPSATLCFPLIEAHQINVTALVPPAVSLWLQAIQEWGDNRQLASLKLLQVGGARLSDTLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDPDERIFTTQGRPMSPDDEVWVADENGNPLPRGETGRLMTRGPYTFRGYYNSPEHNASAFDENGFYCSGDLVAIDEQGYITVQGREKDQINRGGEKIAAEEIENLLLGHEAIVHAGLVSMEDSLLGEKSCAYIVTTRPVKAVEIRRFLRELGVADFKLPDRVERVDALPLTPVGKVDKKQLRLWLAARQPVSE
>NZ_CP013940.1|WP_023898233.1|1023518_1024388_+|isochorismatase
MAIPKLNAYTLPTAADLPQNKVSWALEPPRAALLIHDMQEYFLNFWGENCPMIEPVVANIAALRAYCKAQGIPVYYTAQPNNQSDADRALLNDMWGPGLNNHPDKQKVVAALTPDADDTVLVKWRYSAFHRSPLEHALKETGRDQLIICGVYAHIGCMITATDAFMRDIQPFMVADALADFSRDEHLMALNYVAGRAGRVVMTADLLPASEPDAPGSKAALRALVLPLLDESDEPEDDENLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWALLSREPQA
>NZ_CP013940.1|WP_007777102.1|1024384_1025137_+|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase
MTLDFQGKNVWVTGAGKGIGYTTALAFAGAGANVTGFDLAFSQADYPFACETLDVADAAAVAGVCERLLGNNPRLDVLVNAAGILRMGATDELAPDDWQQTFAVNVGGAFNFFQQTMAQFRAQKGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALTVGLELASSGVRANLVSPGSTDTDMQRTLWKSEDAEQQRIRGFAEQFKLGIPLGKIAQPQEVANTILFLASDLASHITLQDIVIDGGSTLGA
>NZ_CP013940.1|WP_012124082.1|1025137_1025551_+|proofreading-thioesterase-EntH
MIWKRHMTLEALNATSVGTMVEHLGIVYTRLGDDLLEATMPVDTRTHQPFGLLHGGASAALAETLGSMAGYLTTRDGQCVVGTEISASHHRAVSQGQVRGVCQPLHLGRQSQCWEIVIYDEQGRRCCTSRLSTAILG

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Crispr_ID: NZ_CP013940_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_10

1417361-1417448

Orphan

Consensus_repeat	Method
GTAGGGCGGGTAAGCGCAGCGCACCCGCCA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP013940_10

>merge|NZ_CP013940|10|1417361-1417448|CRISPRCasFinder
GTAGGGCGGGTAAGCGCAGCGCACCCGCCATTGTTAAAACCAATACCATTTCCCGAAGGTAGGGCGGGTAAGTGCAGCGCACCCGCCA

>NZ_CP013940|10|10|1417361-1417448|CRISPRCasFinder
GTAGGGCGGGTAAGCGCAGCGCACCCGCCA	TTGTTAAAACCAATACCATTTCCCGAAG
GTAGGGCGGGTAAGTGCAGCGCACCCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_162139246.1\|1426427_1426574_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_071601073.1\|1412255_1412306_-\|his-operon-leader-peptide	unknown	unknown	unknown
NZ_CP013940.1\|WP_023898457.1\|1425859_1426369_-\|DUF3304-domain-containing-protein	unknown	unknown	gnl\|CDD\|371700
NZ_CP013940.1\|WP_004385872.1\|1411210_1412110_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NZ_CP013940.1\|WP_007776235.1\|1413294_1414074_-\|C26-family-cysteine-hydrolase-domain-containing-family	unknown	unknown	gnl\|CDD\|183101
NZ_CP013940.1\|WP_004385327.1\|1423531_1423870_+\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NZ_CP013940.1\|WP_007776216.1\|1421630_1422104_+\|DNA-gyrase-inhibitor-SbmC	unknown	unknown	gnl\|CDD\|182195
NZ_CP013940.1\|WP_007776253.1\|1408821_1409904_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234972
NZ_CP013940.1\|WP_007776255.1\|1407757_1408825_-\|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|235471
NZ_CP013940.1\|WP_162139247.1\|1427173_1427344_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_023898453.1\|1417476_1418904_-\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NZ_CP013940.1\|WP_139155622.1\|1420370_1421543_+\|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD	unknown	unknown	gnl\|CDD\|183117
NZ_CP013940.1\|WP_097566144.1\|1415772_1415835_+\|membrane-protein-YoeI	unknown	unknown	unknown
NZ_CP013940.1\|WP_007776214.1\|1422304_1423363_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP013940.1\|WP_032982993.1\|1426588_1427122_-\|DUF3304-domain-containing-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_007776250.1\|1409900_1411205_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NZ_CP013940.1\|WP_007776238.1\|1412486_1413311_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NZ_CP013940.1\|WP_007776227.1\|1415824_1417186_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP013940.1\|WP_007776232.1\|1414340_1415636_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236032
NZ_CP013940.1\|WP_007776222.1\|1418981_1420133_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_023898457.1\|1425859_1426369_-\|DUF3304-domain-containing-protein	gnl\|CDD\|371700	pfam11745, DUF3304, Protein of unknown function (DUF3304). This is a family of bacterial proteins of unknown function.	4.00227e-07
NZ_CP013940.1\|WP_004385872.1\|1411210_1412110_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.41334e-160
NZ_CP013940.1\|WP_007776235.1\|1413294_1414074_-\|C26-family-cysteine-hydrolase-domain-containing-family	gnl\|CDD\|183101	PRK11366, puuD, gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional.	1.14936e-74
NZ_CP013940.1\|WP_004385327.1\|1423531_1423870_+\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	2.72201e-58
NZ_CP013940.1\|WP_007776216.1\|1421630_1422104_+\|DNA-gyrase-inhibitor-SbmC	gnl\|CDD\|182195	PRK10016, PRK10016, DNA gyrase inhibitor SbmC.	4.38905e-99
NZ_CP013940.1\|WP_007776253.1\|1408821_1409904_-\|histidinol-phosphate-transaminase	gnl\|CDD\|234972	PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional.	0
NZ_CP013940.1\|WP_007776255.1\|1407757_1408825_-\|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|235471	PRK05446, PRK05446, bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB.	0
NZ_CP013940.1\|WP_023898453.1\|1417476_1418904_-\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NZ_CP013940.1\|WP_139155622.1\|1420370_1421543_+\|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD	gnl\|CDD\|183117	PRK11397, dacD, serine-type D-Ala-D-Ala carboxypeptidase DacD.	0
NZ_CP013940.1\|WP_007776214.1\|1422304_1423363_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	2.91637e-39
NZ_CP013940.1\|WP_007776227.1\|1415824_1417186_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.68364e-43
NZ_CP013940.1\|WP_007776238.1\|1412486_1413311_+\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.19312e-76
NZ_CP013940.1\|WP_007776222.1\|1418981_1420133_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.57088e-27
NZ_CP013940.1\|WP_007776232.1\|1414340_1415636_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236032	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP013940.1\|WP_007776250.1\|1409900_1411205_-\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0

>NZ_CP013940.1|WP_007776227.1|1415824_1417186_+|APC-family-permease
MSLNATPKTSRVELRKTLTLIPVVMMGLAYMQPMTLFDTFGIVSGLTDGHVPTAYAFALVAILFTALSYGKLVKRFPSAGSAYTYAQKAINPTVGFMVGWSSLLDYLFAPMINILLAKIYFEALVPEIPSWIFVVLLVAFMTVFNMRTLKGVANFNTIIVVLQVVLIAVILGMVIYGVSHGEGAGTLVSSRPFWSENAHVIPMITGATILCFSFTGFDGISNLSEETKDAGRVIPRAIFLTALIGGLIFIFATYFIQLYFPDISRFKDPDASQPEIMLYVAGKAFQVGALIFSTVTVLASGMAAHAGVARLMYVMGRDGVFPNRFFGYVHPKWRTPALNVVLVGAIALMAINFDLVMATALINFGALVAFTFVNLSVISQFWIREGRNKTLKDHFTYLLLPVCGALTVGALWLNLEESSMVLGLIWAGIGVVYLACVTRSFRNPVPQYREDIA
>NZ_CP013940.1|WP_097566144.1|1415772_1415835_+|membrane-protein-YoeI
MGQFFAYAAMFTVKENNYVA
>NZ_CP013940.1|WP_007776232.1|1414340_1415636_+|4-aminobutyrate--2-oxoglutarate-transaminase
MQSNQQWQERREQAVPQGVGNALPVFVARAKNAEIWDVEGRRYIDFASGIAVLNTGHNHPAVIAAVKAQLDNFTHPCFQVTPYGNYIELAERLNRLAPISEPCQTLFLSTGAEAVENAIKVARIATGRSAVIAFRGAFHGRTLLGMALTGKVQPYKKGYGPFPAGIYHAPYPAAYLGVSDTQALASLAGIFAADVAPEEVAAIIIEPVQGEGGFYAASAEFMQQLRALCDKHGIVLIVDEIQSGFCRTGKTFAIEHSGVEPDLITMAKSLAGGFPLSGLVGKKALFDKALPGGLGGTYAGSPVSIAAALAVTDLIEEEQLNARAIAQGELLMSRLRELAQEYDFIGDVRGVGAMVAMELVHERDSHRPDKELTQQLVQEAGRQGLILLTCGVRANVIRFLIPLTAEKEIVTEGLNILSSCLKVVQNTRPAK
>NZ_CP013940.1|WP_007776235.1|1413294_1414074_-|C26-family-cysteine-hydrolase-domain-containing-family
MTVNTPPLIGVLMCQSNQDEQLILTVENLYLAPLYHFGAVAIPLPHHLADDPLYLAAALKSLSGIFLPGSPCNIEPHHYGEEAQEASNDPGRDKLALMLVRHALNTGLPLLGSCRGVHEMVVATGGKLWRQLHNVEGLREHEVNPNGSPEAKFAPVHGLEITPGGWLDSWVAPGETVRVNTLHQQGIREVGPGVFIEARADDGLIEAISIPDHPFAFGVQWHPEWGALHDEPLSKQIFDAFVAACRVWQADHQALTPLA
>NZ_CP013940.1|WP_007776238.1|1412486_1413311_+|SDR-family-oxidoreductase
MKKVAIVGLGWLGMPLALALNARGWQVAGSKTTADGVEAARMCGIESYQLELLPEMVCDSEDLEALFNADALVVTLPARRTGGNGDYYLQAVQQVVDSALAHQIPRIIFTSSTSVYGETEGICKETTPANPVTESGRVLRELEQWLHNLPGTSVDILRLAGLVGPGRHPGRFFAGKSAPNGGHGVNLVHLEDVIGAITLLLQSPRGGHIYNLCAPQHPTRAEFYPVMARQLGLEPPRFSESPAGSKGKLIDGNRICHELGFEYLYPNPLVMPME
>NZ_CP013940.1|WP_071601073.1|1412255_1412306_-|his-operon-leader-peptide
MTRVQFNNHHHHHHPD
>NZ_CP013940.1|WP_004385872.1|1411210_1412110_-|ATP-phosphoribosyltransferase
MTDNNRLRIAIQKSGRLSDDSRELLARCGIKINLHTQRLIALAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLTRRAQGDDPRYYTLRRLDFGGCRLSLATPVDDVWEGPESLNNKRIATSYPHLLKRYLDQKGVQFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMPAVKQQLIDKLLTRIQGVIQARESKYIMLHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NZ_CP013940.1|WP_007776250.1|1409900_1411205_-|histidinol-dehydrogenase
MTFTTIVDWNACSAQQQRELLMRPAISASESITRTVAEILDTVKARGDAALREYSAKFDKTEVAALSVTPEEIDAAAARLDDNVKQAMAVAVANIEKFHRAQQLAPVDIETLPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPARIAGCKRVVLCSPPPIADEILYAAKLCGVQEVFQAGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPDAAMAQAVADATARQLEALPRAETARQALTASRIIVARDLAQCVAISNQYGPEHLIIQTRNARDLVDDITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATSSSLGLADFQKRMTVQELTPAGFSALAETIETLAAAEQLTAHKNAVTLRVAALKEQA
>NZ_CP013940.1|WP_007776253.1|1408821_1409904_-|histidinol-phosphate-transaminase
MSIEELARENVRTLTPYQSARRLGGNGDVWLNANEYPQAVEFQLTAQTLNRYPECQPKLVIERYAQYAGVKPEQVLVSRGADEGIELLLRAFCEPGRDAVLYCPPTYGMYSVSAETIGVECRTVQATDGWQLDLPAIAEQLDGVKVIFVCSPNNPTGQLINPQDLRTLLEMARGKAIVVADEAYIEFCPQATLAGWLGEYPHLVVLRTLSKAFALAGLRCGFTLANEEVINLLLKVIAPYPLSTPVADIAAQALSPQGITAMRERVAQVLANRDVLVAGLRETPCVEAVFDSETNYVLARITASSAVFKSLWDQGIILRDQNRQPTLSGCLRITVGTREECQRVIDALRDQPGLAATERV
>NZ_CP013940.1|WP_007776255.1|1407757_1408825_-|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB
MSQKYLFIDRDGTLIAEPPEDFQVDRFDKLAFEPDAIPVLLQLQKAGFKLVMITNQDGLGTDSLPQADFDGPHNLMMQIFTSQGVLFEDVLICPHFPTDNCDCRKPKTKLVGRYLEPGVMDAANSYVIGDRATDVELAENMGITGLRYNRADLNWAAIGEHLTKRDRYAHVERSTRETQIDVKVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEIGVKGDLYIDDHHTVEDTGLALGEALKLALGDKRGISRFGFVLPMDECLARCALDISGRPHLEYKAEFNYQRVGDLSTEMVEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFGRTLRQAIRVEGEILPSSKGVL
>NZ_CP013940.1|WP_023898453.1|1417476_1418904_-|exodeoxyribonuclease-I
MSDSAAQPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITGITPQVARARGENEADFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVYATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWIAPIAWHPENRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGEASAVPVKLVHLNKCPVLAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTDNVDAQLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQEQERWLTHRRDVFTPEFLQAYAQELEMLYNQYESDKEKTALLKALYQYAQEIVG
>NZ_CP013940.1|WP_007776222.1|1418981_1420133_-|acyltransferase
MAQGKSWSPELEGLRGLASLWVLLGHICLLVQCRIPLLYDPGMGVDLFILLSGFLMAKNYMERRDIEPWTSGHTMRNFWLRRFFRIAPLYYFLLLLALIFGAAFGEWRDVIAQAWPSTQTESQRYADTSAGNILAHISFVFGAIPYYSFRTVLPDWSIGLEMQFYVLFPFIMLLVMRWGFFAAAFAVMVAYFAARWALPGYFEAFPMPSMILIKLPLFVAGMLIAAAVRESRRLLLLLAFLAPVLAWQMHIAVTPVRLIAQCVMIAGLGALLWQAQAGSLLHQAMRLPRWLLTRRISQFLGDVSYSVYLLHLMIVIPVIGLLVEHSAFEQHASPVRLLIAAAISLPVTYTLATVLFHRVEKPGIALGKRLITRKPVQPEQVMP
>NZ_CP013940.1|WP_139155622.1|1420370_1421543_+|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD
MLLKFRPMIAVSCIMLAGITAQANAAALSMPQPPAIMAGSYVLMDYTTGQILAANNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDVVTVGKDAWAKDNPVFEGSSLMFLKAGDRVTVRDLSRGLIVDSGNDACVALADYVAGGQPQFVAMMNDYVQKLGLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPAFYHMYSEKSLTWNGITQQNRNGLLWDKTLNVDGLKTGHTSGAGFNLIASSVDGKRRLIAVIMGADSPKGREDQARKLLHWGQQTFDTVEILQKGKKVGTERVWYGKNEQVAVGTDRDFWLTLPKAQLANVKAKYLLDRERLDAPLDANERVGEIELYNGDTIIARMPLVTLEKVKKGGVFSRFGDWLHLTL
>NZ_CP013940.1|WP_007776216.1|1421630_1422104_+|DNA-gyrase-inhibitor-SbmC
MDYTIEHVLTRKIAGFHLVGPWEKTVPQGFEQLSLWVDNFHIQPQAWLAVYYDNPQQVAPEKLRADTVVEVPADFTLPENSVGVILTDLPGGQYAVARARVEDNDFGTPWLAFFTRLHQDVRYQMAARPCFEIYLNDGKREGYWEIDMYIPVQTSGE
>NZ_CP013940.1|WP_007776214.1|1422304_1423363_+|FUSC-family-protein
MRADKSLSSFEIRLYQHYRIVHGVRIALAFILTFLLVRMLNVPEGTWPLITLVVVMGPISFWGNVVPRAFERIGGTILGAALGLVALQLEGWSLPLMLLWCALAMFLCGFLALGKRPYQALLIGITLSVVVGSPQGDMLVALWRGGDVIFGSLLAMLFTSLWPQRAFIHWRIQMANFVGDFAKIYHAGLSPNLVERPRLDKPLQNILGSVVKLRAYITPASKETHIQRAIFEAIQTTSRNMVCTLEMQINAWWASRESHFLMINARTLRDSQQMTENTLAAIAQALREGNPSPVMANREKLAEIAQELRALMSEGQQGALVETPIHGYVWLSMELAQQLERLSQLICRALRK
>NZ_CP013940.1|WP_004385327.1|1423531_1423870_+|DUF496-family-protein
MENSKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASMKSDYEDRVDDYIIKNAEISKERREISKKLKAMGELKVHEPKGEE
>NZ_CP013940.1|WP_023898457.1|1425859_1426369_-|DUF3304-domain-containing-protein
MGFYRRLEKIDAAVNRGYTRWGKWIWFGLSLPVMIYAAWLVWASIWGPPTGAVTLIIHSELDRPVLGFSVNGVAGSNASAHGGGGATCCGSIEGKTAEVIWTLSTTRAQYDAGMRKETRRVVMPLPKREWGEDNLHVHFLPGDKVLLGWSKNAWSPYEKRPDNIKQPKS
>NZ_CP013940.1|WP_162139246.1|1426427_1426574_-|hypothetical-protein
MDIESLIAAASRAQQDSEHKPGTCSRIWHIGFFFDGMGRNIEREAAAD
>NZ_CP013940.1|WP_032982993.1|1426588_1427122_-|DUF3304-domain-containing-protein
MGFYSRLEKIDAAVNRGYARWGKWIWFGLSTPVMVYAIWLVWASIWGPPTGAVALIIHSDLDRPILEFSVNGVAGGNAFVRDKNNVYASDGGKLTCCGIIKGDTAEVIWTLSTTRTQYDSGMRKETRRVVMSLPKREWGEDNLHVHFLPGDKVLLGWSMDAWSPYEKRPDNIKQPKS
>NZ_CP013940.1|WP_162139247.1|1427173_1427344_-|hypothetical-protein
MDIETLIAAASRAQQDSEHKLGTCSCIWHIHVSGISVSFLMAWVAILSGKRRLINI

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Crispr_ID: NZ_CP013940_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_11

2930339-2930439

Orphan

Consensus_repeat	Method
ATGGTGGGTGCGCTGCGCTTACCCACCCTACCATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_11

>merge|NZ_CP013940|11|2930339-2930439|CRISPRCasFinder
ATGGTGGGTGCGCTGCGCTTACCCACCCTACCATTCACCTTTTTACTGGGTGTGATGGGTGTTTGAATGGTGGGTGCGCTGCGCTTACCCACCTTACCATT

>NZ_CP013940|11|11|2930339-2930439|CRISPRCasFinder
ATGGTGGGTGCGCTGCGCTTACCCACCCTACCATT	CACCTTTTTACTGGGTGTGATGGGTGTTTGA
ATGGTGGGTGCGCTGCGCTTACCCACCTTACCATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_007781566.1\|2939052_2939907_+\|co-chaperone-YbbN	unknown	unknown	gnl\|CDD\|225660
NZ_CP013940.1\|WP_023899188.1\|2925801_2927187_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP013940.1\|WP_007781642.1\|2924647_2925664_+\|Mal-regulon-transcriptional-regulator-MalI	unknown	unknown	gnl\|CDD\|182193
NZ_CP013940.1\|WP_007781649.1\|2920736_2921423_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_007781646.1\|2922594_2922807_+\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP013940.1\|WP_004387145.1\|2927363_2927858_+\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP013940.1\|WP_023899194.1\|2934503_2936915_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225669
NZ_CP013940.1\|WP_004385479.1\|2940017_2940935_+\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
NZ_CP013940.1\|WP_007781594.1\|2927861_2928584_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP013940.1\|WP_007755817.1\|2921726_2922593_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP013940.1\|WP_023899189.1\|2928716_2929226_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP013940.1\|WP_007767829.1\|2936911_2937598_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182569
NZ_CP013940.1\|WP_032983165.1\|2937565_2938195_+\|multifunctional-acyl-CoA-thioesterase-I/protease-I/lysophospholipase-L1	unknown	unknown	gnl\|CDD\|182521
NZ_CP013940.1\|WP_165688903.1\|2933103_2933277_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_023899190.1\|2929222_2930290_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP013940.1\|WP_007781643.1\|2923083_2924583_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273923
NZ_CP013940.1\|WP_023899191.1\|2930517_2931663_-\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|366438
NZ_CP013940.1\|WP_007781578.1\|2933380_2934514_+\|tRNA-2-selenouridine(34)-synthase-MnmH	unknown	unknown	gnl\|CDD\|236982
NZ_CP013940.1\|WP_023899192.1\|2931674_2933045_-\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|107204
NZ_CP013940.1\|WP_007781569.1\|2938223_2938994_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181198

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_023899188.1\|2925801_2927187_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP013940.1\|WP_007781642.1\|2924647_2925664_+\|Mal-regulon-transcriptional-regulator-MalI	gnl\|CDD\|182193	PRK10014, PRK10014, DNA-binding transcriptional repressor MalI; Provisional.	1.12585e-108
NZ_CP013940.1\|WP_007781566.1\|2939052_2939907_+\|co-chaperone-YbbN	gnl\|CDD\|225660	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones].	3.57407e-115
NZ_CP013940.1\|WP_007781646.1\|2922594_2922807_+\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	2.94507e-43
NZ_CP013940.1\|WP_004387145.1\|2927363_2927858_+\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.10618e-122
NZ_CP013940.1\|WP_023899194.1\|2934503_2936915_-\|ABC-transporter-permease	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP013940.1\|WP_004385479.1\|2940017_2940935_+\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	4.9939e-76
NZ_CP013940.1\|WP_007781594.1\|2927861_2928584_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.48026e-165
NZ_CP013940.1\|WP_007755817.1\|2921726_2922593_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP013940.1\|WP_023899189.1\|2928716_2929226_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	8.40275e-89
NZ_CP013940.1\|WP_007767829.1\|2936911_2937598_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|182569	PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional.	2.52958e-153
NZ_CP013940.1\|WP_032983165.1\|2937565_2938195_+\|multifunctional-acyl-CoA-thioesterase-I/protease-I/lysophospholipase-L1	gnl\|CDD\|182521	PRK10528, PRK10528, multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional.	3.62749e-130
NZ_CP013940.1\|WP_023899190.1\|2929222_2930290_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	3.73106e-175
NZ_CP013940.1\|WP_007781643.1\|2923083_2924583_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.8992e-174
NZ_CP013940.1\|WP_023899191.1\|2930517_2931663_-\|PLP-dependent-transferase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	0
NZ_CP013940.1\|WP_007781578.1\|2933380_2934514_+\|tRNA-2-selenouridine(34)-synthase-MnmH	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	2.07247e-165
NZ_CP013940.1\|WP_023899192.1\|2931674_2933045_-\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	2.89022e-127
NZ_CP013940.1\|WP_007781569.1\|2938223_2938994_+\|SDR-family-oxidoreductase	gnl\|CDD\|181198	PRK08017, PRK08017, SDR family oxidoreductase.	0

>NZ_CP013940.1|WP_023899190.1|2929222_2930290_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIRVWPVGLDADPQAVPFAQSVITAEIERWPETALTRELARHNAFVNRDVFPLIADRFTQKQLLDKLNLPTAPWQLLASSDEWPQVFETLGELAIVKRRTGGYDGRGQWRLRENETETLPAECYGECIVEQGINFTGEVSLVGARAHDGSAVFYPLTHNLHQDGILRTSVAFPQANATQQKQAETMLRAIMDELNYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAVTGLPLPQPVVSGPSVMVNLIGTDLNYDWLKLPLVHLHWYDKEVREGRKVGHLNLSDAEATLIDATLEALAPLLPPEYASGIAWAQAHLR
>NZ_CP013940.1|WP_023899189.1|2928716_2929226_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSSHTPARIAIVMGSRSDWATMQFAAEILDALDVPHHVEVVSAHRTPDKLFSFAERAQENGFQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGLDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILAQHDSALLARLEEWRQKQTDEVLENPDPRGEA
>NZ_CP013940.1|WP_007781594.1|2927861_2928584_+|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCSEEPAITAGFLRFLAGTAREADALYILGDLFEAWIGDDDPEPLHREIAAALRALVQSGVPCYFIHGNRDFLLGRRFARESGMQLLPEEQVLDLYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLRLRRRIAARMRAGSKASNSQKDLAIMDVNPQAVVETMERQQVQWLIHGHTHRPAVHTLEANGKPAHRVVLGAWHSEGSMVKVTPDNVELIAFPF
>NZ_CP013940.1|WP_004387145.1|2927363_2927858_+|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYDNTIFHRVINGFMIQGGGFEPGMKQKSTKDPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVSTGRSGMHQDVPKEDVIIERVTVSE
>NZ_CP013940.1|WP_023899188.1|2925801_2927187_-|cysteine--tRNA-ligase
MLKIFNTMSRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFIAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGEDFVALVDRMVAEMHKDFDALNILRPDSEPRATQHIPEIIEIVEQLIARGHAYVAGNGDVMFAVESDADYGKLSRQDLEQLQAGARVEVADSKRNPMDFVLWKMSKPGEPSWPSPWGDGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFPHHENEIAQSTCAHDGEYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLQHYDAETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDASATASGGEAFEARFVEAMNDDFNTPEAYSVLFDMAREVNRLKAEDSSAANQLAAHLRKLAAVLGLLEQAPEQFLQSGAQANDDEVAEIEALIVKRLEARKAKDWAAADAARDRLNEMGIILEDGPQGTTWRRK
>NZ_CP013940.1|WP_007781642.1|2924647_2925664_+|Mal-regulon-transcriptional-regulator-MalI
MKKVSIIDVARQAGVSVSTVSLVLREKGKISAATIEKVHAAIEALGYVHNVAAANLRGKTSNLIGLVVEDLNDPFSTRVTASLVQALEAQGFMVILTQPGRETGRLESCFVSFTRQGVAGVVYLTADSRHRALPAPVVQSTLPLVVVSQSPVEEKLNSVVRDNRQAGGLATRYLIERGHRNIAYIGGTPGCLIREERLFGYRAALSQYGLPWRDEFAPACAEETLAVSQTVRQLLEANNKITALLCHSPHAIIGCLEAIHQVGRTVGKDVFLTQQVSLIGFEDMMHVNLTSPSFTYVSSASEETGHQAAGLIVRLIREPGLPAQRITLSGQLIARGSA
>NZ_CP013940.1|WP_007781643.1|2923083_2924583_+|PTS-transporter-subunit-EIIC
MSLITGLVKSLSKLSMIGRALMLPISLLPAAGLLLAFGDKFHLPLMMNAGGVIFDNLPLLFAIGSAVGLASESGIAALSAAVSVFIINITISTQLGITPEMAASGGKYAMVVGIPTLQMGVFGGLISGILAAWCYNRFHTLQLPEFLGFFSGKRFVAIAAAFLSFLLGLALPYVWQHIQAGIDALSVIVNGDNQAASTFIFGLVERALIPLGLHHIWYPSFWYSFGDYTTQSGQVIHGDQTIWFKMLEEGVKSFSSNTYQNAGKFMQGEFPLMLFALPAACLAMYHEASTKNKKIASGILFSAALTCFLTGITEPVEFTFIFVAPVLYVFNAIMAGLAYMSMYLLDAHIAKSFSAGLIDYISFGILPSFNGYQTHYLNAVIVGIPMAIIYYFTFRFVIRRFDVKTPGRVDVTASVDDKTDAELAGNIVGLLGGKENITSVGACITRLRLEVARPDLVDRDGLNGLGARGVVFVGDNGIQVIFGARAQFIAQSLSGMTGK
>NZ_CP013940.1|WP_007781646.1|2922594_2922807_+|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIVISEGLVTVDGAVETRKRCKIVAGQTVSFDGQSVMVTA
>NZ_CP013940.1|WP_007755817.1|2921726_2922593_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRLEVAEKVKARVAAGKRAPGLAVVLVGANPASQIYVGSKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADAAIDGILVQLPLPAGIDNVKVLERIAPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRQHVENADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLENGKVVGDVVFEDAAERAGYITPVPGGVGPMTVATLIQNTLQACVEYHDGEEA
>NZ_CP013940.1|WP_007781649.1|2920736_2921423_+|hypothetical-protein
MNPTSLQNKYRTANENTLAIWSKNAGIGEVRKENYYDPLKLALATGIQPTVPVKVSRLLCELQQLTQDDPLADILPAHGFHFTFLPLTLPLYHVNEPLPANVEQLTTLWTQFDEKKIIIRNLQLVALPGQLLLAGIPEHPAIAMRHSFCDKVLESDWKHELLRRHTGSPLPAPFWHSTLLRYNAAFLPATLRQFFLKHQNMDFGDVTGELILARVNYNWTQCYPLRIN
>NZ_CP013940.1|WP_023899191.1|2930517_2931663_-|PLP-dependent-transferase
MDKFATLSVHSGTHHDQHGAVMPPIYATSTYAQPAPGEHTGYEYSRSGNPTRHALERAIAELEAGSQGFAFASGLAAISTVLELLDKESHIVAVDDVYGGTYRLLENVRKRTAGLTVSWVKPDDLAALEAAIRPETRMIWVETPTNPLLKLADLEAIAGLARRHGLISVADNTFASPAIHRPLTLGFDIVVNSATKYLNGHSDVVAGLAVVGDNPELAQQLAYLQNAVGGVLDPFSSFLTLRGIRTLALRMERHSASALKIAQRLAQHPQVEKVFFPWLESHPQYALARRQMALAGGMISIVVRGDDQRAAQVIKKLRLFTLAESLGGVESLVSQPFSMTHASIPLEQRLANGITPQLIRLSVGIEDAEDLLADLEQALEA
>NZ_CP013940.1|WP_023899192.1|2931674_2933045_-|pyridoxal-phosphate-dependent-enzyme
MSIVDSVTSLIGQTPLLRLAKLDTGPCELLLKLENQNPGGSIKDRVALSMINEAERLGRLSPGGTIIEATAGNTGLGLALIAAQKGYKLILVVPDKMSREKIYHLRALGVDVRLTRSDVNKGHPAYYQDYAQRLADETPGAFYIDQFNNPANPLAHQTTTAPELFAQAEGRIDAIVVGVGSGGTLGGLQAWFRKHSPHTEFVLADPAGSILADQVETGRYHEAGSWLVEGIGEDFIPPLAHLEGVRQAFRVTDAAAFAAARDLLKIEGVLAGSSTGTLLAAALRYCRAQTTPKRVVTFACDSGNKYLSKMFNDDWLRQQGLQTRPAVGDLRDYIAFRHDEGAAVTAASDDSLATVLARMRLYDISQLPVLAQGLVVGIVDEWDLLTFIRGDSQRFLTPVSAAMNREVVTLDKSASERELFEVFERGLVAVITDETRFLGLITRTDVLNRWRNQLES
>NZ_CP013940.1|WP_165688903.1|2933103_2933277_-|hypothetical-protein
MRKPAKAGVCIRKNGENGSKKALFSHRYFRTTLPLDFFTARTAENIPSGSKDPRMIL
>NZ_CP013940.1|WP_007781578.1|2933380_2934514_+|tRNA-2-selenouridine(34)-synthase-MnmH
MQKDAQRRPDSDDALALITRGVTLIDVRAPVEFAQGAMPGAINLPLMNNDERAAVGTCYKQHGQQAALALGHRLVCGEVREARLNAWRLACEHHPEGYLCCARGGMRSHIVQQWLRERGIDYPLVEGGYKRLRQAAMDATDRLSRLPMVLIGGCTGSGKTQLVKALPTGIDLEGLAHHRGSSFGRTLTPQRAQASFENHLAAAMLNHHARWTTLSNPFWVLEDEGKMIGANHLPAVLREQMLQAPVVVVEEPLERRLERLREEYFVQMHAAFQAALGDDAAAWRAYGDYLHHGLYAIRRRLGLARYAELASLQAAALVHQQRSGETHAHFAWLAPLLEGYYDPMYRYQLEKKAQHIAFRGDHQQVDAWLRHRYCASR
>NZ_CP013940.1|WP_023899194.1|2934503_2936915_-|ABC-transporter-permease
MTARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLSQQTREFMAGDRTLKSSRAVPQAWLDKAGEDGLAVSRQLSFSTMTFAADRPQLASVKAVDTRYPLYGTLQTRPQGLLPAPGTVLLAPRLMALLGVKPGDPVEVGDATLKVAGEVIQEPDSGFNPFQMAPRLLMNLADVEQTGAVQPGSRLTWRYKFAGEPEALAQYERWLLPQLQPEHRWTGLEQDDSALGKSLQRSQQFLLLSALLTLLLAVAAVAVAMNHYCRSRYDLVAILKTLGAGRAALRKLIVGQWLMVLLATVTGGAAGLLFEAILMQLLKPVLPAALPEASFWPWLWAVGAMVVISLLVGLRPYRLLLATQPLRVLRRDAVANLWPLKIYLPVMALIVVALLAGLMGGRMLLWAVLAGAVVLAALCGLAGWALLWAMRRLRLRSLALRLAVNRLLRQPWQTLSQLATFSLSFMLLALLLVLRGDLLDRWQQQLPPESPNYFLINIAPEQRDAVKAFLAEHQIIPQAFYPIVRARLTQINGKATVGNEDEALNRELNLTWKAERPAHNPLTAGRWPPRAGEVSMEEGLAKRLNIAPGDSVTFTGDTQAFTAKVTSLRKVDWESLRPNFFFIFPPGALDGQPQSYLTSFRADKADTILTQLNREFPTVSVLDIGAILRQIGQVLEQVSRALEVMVVLVTACGVLLLLAQVQVGMHQRRQELVVYRTLGAEKKLLRATLWGEFALLGLVAGLVAAIGAEVALGVLQTRVFDFPWEPDWRLWVMLPLCGALLLSLCGGWLGVRLLKGKALFRQFNG
>NZ_CP013940.1|WP_007767829.1|2936911_2937598_-|ABC-transporter-ATP-binding-protein
MPAENILEVHHLNKSVGQGEHALSILTGVELVVKPGQSIALVGESGSGKSTLLAILAGLDDGTSGEVRLLGEPLHQMDEEARARLRARDVGFVFQSFMLIPTLNALENVELPAMLRGETGKASRQQAQALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPAVLFADEPTGNLDRQTGDRIADLLFSLNRDSGTTLILVTHDPELAARCDRTLRLRDGKLWEEA
>NZ_CP013940.1|WP_032983165.1|2937565_2938195_+|multifunctional-acyl-CoA-thioesterase-I/protease-I/lysophospholipase-L1
MMNFKNVFRWHFPFLLLALLSFRAAAADTLLVLGDSLSAGYRMAADAAWPALLNDKWQQRDVRVVNASISGDTAQQGLSRLPALLKQHQPRWVLIELGGNDGLRGFPPDTLSATLRKIIEQVKTAGAEPLLMQIKLPANYGRRYNQVFEAIYPELAHSFSIPLLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAQRLAPLVKHDS
>NZ_CP013940.1|WP_007781569.1|2938223_2938994_+|SDR-family-oxidoreductase
MQKSLLITGCSSGIGLACAHELRRQGFQILAACRKPDDVARMNTLGFTGIELDLDSPQSVEAAAQEVIRLTNNRLYGIFNNGGYGVYGPLSTISRAQMEQQFSTNFFGAHQLTMLLLPAMLPHGEGRIVNTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRYSGVKVSLIEPGPIRTRFTDNVNQTQADKPVENPGIAARFTLGPEAVVAKVRHAFESPNPRIRYPVTLVTHAVGILKRLLPTRIMDKILHG
>NZ_CP013940.1|WP_007781566.1|2939052_2939907_+|co-chaperone-YbbN
MSEQNIINLSEANLHQILEQSMTVPVLFYFWSDRSQHCQQLTPVLEKLANQYQGQFILAKVDCDNEQAIAAQFGLRAIPTVYLFSQGQPVDGFQGPQPEEAIRALLDKVLPREEELKAQEALALMQEGKNAEALPLLKEAWQMSNQASEIGLLLAQVQIALNRSEDAEAVLKTIPLQDQDTRYQSLVAQIDLLKQAADTPEIQQLQQQVQQNPDDAQLASQLALQLHQVGRNEEALELLFEHLKKDLSAADGQARKMFQEILAALGTGDALASKYRRQLYSLLY
>NZ_CP013940.1|WP_004385479.1|2940017_2940935_+|SPFH/Band-7/PHB-domain-protein
MLFIIPVLIFVALVIVMAGVKIVPQGFQWTVERFGRYTKTLQPGLNLVVPFMDRVGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINTRLLHIVDEATNPWGIKVTRIEIRDVRPPAELIASMNAQMKAERTKRAYILEAEGVRQAEILKAEGEKQSQILKAEGDRQSAFLQAEARERSAEAEARATKMVSEAIAAGDIQAVNYFVAQKYTDALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELMKESGNERKRP

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Crispr_ID: NZ_CP013940_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_12

2998943-2999764

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTCGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CRT

13 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP013940_12

>merge|NZ_CP013940|12|2998943-2999764|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTCGCGCGGGGAACACCTGCCACGCGTCTGCCGCAGCGTATTCGGCGTCGGTTTATCCCCGCTCGCGCGGGGAACACGCCTATTTCGGGTGAAAAACCGAGATAGACTTCGGTTTATCCCCGCTCGCGCGGGGAACACTAAAGCATTTATTTCATCAATTATTTTTTTATCGGTTTATCCCCGCTCGCGCGGGGAACACTCGCAGTATCAGTCGCTCGATAAACGCTGCGTCGGTTTATCCCCGCTCGCGCGGGGAACACGCCTAGCCGCGCCAGCCGCAGTAATTCGGCACCGGTTTATCCCCGCTCGCGCGGGGAACACCCGTCTCACACCGAGGGGATGTCCTGGGACGGCGGTTTATCCCCGCTCGCGCGGGGAACACCCGTAATGATTACCCCCGCTCTCCTGCCAGATCGGTTTATCCCCGCTCGCGCGGGGAACACCTGATTTTCGGCATCCCGTCGTACGCGGTCTGCGGTTTATCCCCGCTCGCGCGGGGAACACGCTTCCAGGAACAAGAGAGAAATTATCCAGCGCGGTTTATCCCCGCTCGCGCGGGGAACACCGCAGCGCGATAATGAACGTTGCGGCGATTGGCGGTTTATCCCCGCTCGCGCGGGGAACACCGTGACGTCACCTGAGAAGCGTTGGAGAATTTCGGTTTATCCCCGCTCGCGCGGGGAACACATCATTGATCACTACGGCGTTATGCGCACAGGCGGTTTATCCCCGCTCGCGCGGGGAACACTCCTTAATCAATTGTAAGTTGATGAAAAAACGCGGTTTATCCCCGCTCGCGCGGGGAACAC

>NZ_CP013940|12|1|2998943-2999764|PILER-CR
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CTGCCACGCGTCTGCCGCAGCGTATTCGGCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCCTATTTCGGGTGAAAAACCGAGATAGACTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TAAAGCATTTATTTCATCAATTATTTTTTTAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCGCAGTATCAGTCGCTCGATAAACGCTGCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCCTAGCCGCGCCAGCCGCAGTAATTCGGCAC
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCGTCTCACACCGAGGGGATGTCCTGGGACGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCGTAATGATTACCCCCGCTCTCCTGCCAGAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CTGATTTTCGGCATCCCGTCGTACGCGGTCTG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCTTCCAGGAACAAGAGAGAAATTATCCAGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGCAGCGCGATAATGAACGTTGCGGCGATTGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGTGACGTCACCTGAGAAGCGTTGGAGAATTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	ATCATTGATCACTACGGCGTTATGCGCACAGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCCTTAATCAATTGTAAGTTGATGAAAAAACG
CGGTTTATCCCCGCTCGCGCGGGGAACAC

>NZ_CP013940|12|12|2998943-2999764|CRISPRCasFinder
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CTGCCACGCGTCTGCCGCAGCGTATTCGGCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCCTATTTCGGGTGAAAAACCGAGATAGACTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TAAAGCATTTATTTCATCAATTATTTTTTTAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCGCAGTATCAGTCGCTCGATAAACGCTGCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCCTAGCCGCGCCAGCCGCAGTAATTCGGCAC
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCGTCTCACACCGAGGGGATGTCCTGGGACGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCGTAATGATTACCCCCGCTCTCCTGCCAGAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CTGATTTTCGGCATCCCGTCGTACGCGGTCTG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCTTCCAGGAACAAGAGAGAAATTATCCAGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGCAGCGCGATAATGAACGTTGCGGCGATTGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGTGACGTCACCTGAGAAGCGTTGGAGAATTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	ATCATTGATCACTACGGCGTTATGCGCACAGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCCTTAATCAATTGTAAGTTGATGAAAAAACG
CGGTTTATCCCCGCTCGCGCGGGGAACAC

>NZ_CP013940|12|1|2998943-2999764|CRT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CTGCCACGCGTCTGCCGCAGCGTATTCGGCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCCTATTTCGGGTGAAAAACCGAGATAGACTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TAAAGCATTTATTTCATCAATTATTTTTTTAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCGCAGTATCAGTCGCTCGATAAACGCTGCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCCTAGCCGCGCCAGCCGCAGTAATTCGGCAC
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCGTCTCACACCGAGGGGATGTCCTGGGACGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCGTAATGATTACCCCCGCTCTCCTGCCAGAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CTGATTTTCGGCATCCCGTCGTACGCGGTCTG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCTTCCAGGAACAAGAGAGAAATTATCCAGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGCAGCGCGATAATGAACGTTGCGGCGATTGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGTGACGTCACCTGAGAAGCGTTGGAGAATTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	ATCATTGATCACTACGGCGTTATGCGCACAGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCCTTAATCAATTGTAAGTTGATGAAAAAACG
CGGTTTATCCCCGCTCGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_007781430.1\|3004152_3005709_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP013940.1\|WP_007781439.1\|2999860_3000154_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP013940.1\|WP_007781453.1\|2994339_2994957_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225239
NZ_CP013940.1\|WP_023899231.1\|3008900_3009212_+\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|226219
NZ_CP013940.1\|WP_007781434.1\|3001067_3001718_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187858
NZ_CP013940.1\|WP_023899228.1\|3001699_3002452_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP013940.1\|WP_023899219.1\|2990294_2991086_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP013940.1\|WP_007781449.1\|2996664_2996886_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_032967978.1\|2997852_2998311_-\|DUF3828-domain-containing-protein	unknown	unknown	gnl\|CDD\|372360
NZ_CP013940.1\|WP_071603056.1\|2998313_2998673_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_007781459.1\|2991906_2993463_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227279
NZ_CP013940.1\|WP_023899220.1\|2991082_2991742_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP013940.1\|WP_023899223.1\|2995043_2996465_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP013940.1\|WP_007781432.1\|3002461_3003535_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP013940.1\|WP_032983424.1\|3006061_3008695_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP013940.1\|WP_007781436.1\|3000153_3001071_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP013940.1\|WP_007781431.1\|3003546_3004152_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP013940.1\|WP_007781447.1\|2996882_2997134_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_023899221.1\|2993455_2994283_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP013940.1\|WP_007781426.1\|3009243_3009816_-\|glycoprotein-polysaccharide-metabolism	unknown	unknown	gnl\|CDD\|225668

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_007781430.1\|3004152_3005709_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.11686e-145
NZ_CP013940.1\|WP_007781439.1\|2999860_3000154_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.21674e-65
NZ_CP013940.1\|WP_007781453.1\|2994339_2994957_-\|membrane-protein	gnl\|CDD\|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	2.16298e-38
NZ_CP013940.1\|WP_023899231.1\|3008900_3009212_+\|MGMT-family-protein	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	6.11102e-49
NZ_CP013940.1\|WP_007781434.1\|3001067_3001718_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	6.90146e-70
NZ_CP013940.1\|WP_023899228.1\|3001699_3002452_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.57235e-44
NZ_CP013940.1\|WP_023899219.1\|2990294_2991086_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	3.78932e-142
NZ_CP013940.1\|WP_032967978.1\|2997852_2998311_-\|DUF3828-domain-containing-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	3.75196e-08
NZ_CP013940.1\|WP_007781459.1\|2991906_2993463_+\|EAL-domain-containing-protein	gnl\|CDD\|227279	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms].	0
NZ_CP013940.1\|WP_023899220.1\|2991082_2991742_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	4.38365e-103
NZ_CP013940.1\|WP_023899223.1\|2995043_2996465_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	5.41835e-95
NZ_CP013940.1\|WP_007781432.1\|3002461_3003535_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.66688e-117
NZ_CP013940.1\|WP_032983424.1\|3006061_3008695_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	5.32097e-112
NZ_CP013940.1\|WP_007781436.1\|3000153_3001071_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.18145e-156
NZ_CP013940.1\|WP_007781431.1\|3003546_3004152_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.43187e-26
NZ_CP013940.1\|WP_023899221.1\|2993455_2994283_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	3.59899e-15
NZ_CP013940.1\|WP_007781426.1\|3009243_3009816_-\|glycoprotein-polysaccharide-metabolism	gnl\|CDD\|225668	COG3126, COG3126, Uncharacterized protein conserved in bacteria [Function unknown].	7.41049e-53

>NZ_CP013940.1|WP_071603056.1|2998313_2998673_-|hypothetical-protein
MTWDKYAAIRHAQDRAYSNSYHKCELFVKEAIIAGGVDIHPTPSAKDMGKALIQAGFYEVYGEPVAGDVAVISSIPGHPDGHVCIYDGQKWISDFRQRSFYPGDSYRRAHPAFKLYRHY
>NZ_CP013940.1|WP_032967978.1|2997852_2998311_-|DUF3828-domain-containing-protein
MNKTICTLFITVALCSTAAVASDETLEQKPQQAALNFNRWYIGGFQNTHQDLLDSKQIRHYVTKTTLEKLRRARQNENEFYDSDFFIKAQDILPDWTSHIVITDVEYDPVCTQVYVSFGQNPAHRVIDCMVKEAGIWKVQSVARVPVAKGKS
>NZ_CP013940.1|WP_007781447.1|2996882_2997134_-|hypothetical-protein
MTAAVLNVKIDTDLKEKLRQYAEQHGETLSATTEKLLQNALVLADEDDAVNSEEIDSQHTEEDVSPLSVKEIKALRKLLKKRK
>NZ_CP013940.1|WP_007781449.1|2996664_2996886_-|hypothetical-protein
MKDASLSTTAATYREACELLRSGYVKHVRLGWDVGSDEFFRIASDWCDAGAKIKKEGDAFVISLKGFPVPRQH
>NZ_CP013940.1|WP_023899223.1|2995043_2996465_+|PLP-dependent-aminotransferase-family-protein
MNYRRTGTASLLRLLGHWQQEHSRLPVYRQLAQALRLIILDGRLPLASRLPGERELAGALGISRTTVASALGLLRDEGFLISRHGAGSAIALPASASVPTLTGSGGALDLSTAALSAGPEVLAACQRAVAQLPDYLGHTGYDPQGLLRLRETIAARYDARGLPTSPDQVMLVNGAVSGFALILRLLTGPGDRVVVDNPTYPLAIAAIRGASCRPVPVSLASQGWDPDGLAATFAQTSPRLAYIIPDYHNPTGYCMDAATRERVAVVATTSRTTLVVDETMVDLWYEDAPPPPLAAFDTQDTVVTLGSAGKSFWGGLRLGWIRASARTIASLIQMRDTLDLGSPLLEQLAVATLIEDAPHFLPPRRTALKARRDACLDAMQRYFPQWRTTLPQGGLSFWVELPRPLATRFAASAEGLGIHLGPGNRFGVDGAFERFLRMPFTLETERLEEAFGRLQPLWHQLMEARAPTARGLV
>NZ_CP013940.1|WP_007781453.1|2994339_2994957_-|membrane-protein
MWRRLVQLYVGLSLYGVSTAMFVRADLGTDPWNVFHVGLARLLSLNLGAVIIGVGVLVLLLWVPLRQKPGLGTISNVIMIGLAADAALAVLPAPSSLALRGVLLVAAVVLNALATGMYIGAGFGAGPRDGLMTGINARTGWSVRSVRTAIEITVLLAGWAMGGTLGIGTVVYALAIGPLIQLCLPWFQVRRVKPVTPAVAVAEKG
>NZ_CP013940.1|WP_023899221.1|2993455_2994283_-|GNAT-family-N-acetyltransferase
MPNPATLRAQPALHWSSEALASMLCCCFDGYLVPFQLDGAVFAYRFGAENVCLNASRVWLAGETVVALALVARRGWRSRLAAFAIHPDWRGKGVGKTLMTQLLDEAHERGEKSMTLEVIVGNDAGQALYERVGFTCEKTLVGFQAHSPAAFVNTQALMPCDPHDIAQRMAAQVEDLPWLMAPETAQALPGMGFSLDDKAFAIIATGFAQPQLRALWVAPQARREGRARQLLSLLHERFAGLMTPVAVDQRLAPLFEQSGFRIQPVRQYEMRHRLN
>NZ_CP013940.1|WP_007781459.1|2991906_2993463_+|EAL-domain-containing-protein
MTIARLIKIVTGVLLLSVLLPVAFSFWLARHQAEQHFVMELDAYTERTLIRTNDIMQQAKASLAKINSFTGEPCSEAHLQAMRRTSFVFRHVQEVVYLKDMTPVCSSLVGRSTSKPLPPPTWVNDENYGIWFSTQNDIGLSVPMVMIAHGPHMVLIDPSSFIDLIPFSAWPINTAIIGLPRNRVLASSGPFDKTVWEMARKSGAQKMEYQGNIYLIHREPRSGIAVVAWASQAPQTAEIRKLQLIWLPAGILISLALAFWLLRLLRRLQSPRYRLQDGITNNELVMHYQPIIRLADGQPIGAEALIRWPQPDGSMLTPDIFIPLAEQTGLIGPLMRRIVHNVLADLGDWLRTHPQQHISINISAFDLHDPQFVDMFSEALAQHGVAPHQLALEITERGFADPTLSGPIIERLRAAGHKIYIDDFGTGYSSLSYLEDLDVDILKIDKSFVDALEYKTVTPHIIEMAKTLKLEMVAEGVENQSQALWLREHGVQYAQGWLYSKALPADMFIAWCRQHGVS
>NZ_CP013940.1|WP_023899220.1|2991082_2991742_+|ABC-transporter-permease
MSFDDLWPLLAQGTLETLYMVGLAALFTVLIGLPVGVVLFITRRGGVLPQPRLNSVLGGVINVGRSLPFIVLLIALIPLTRLIIGTTLGSTAAVVPITIGAFPFFARVVENALDEVDHGRTEAIISMGGNVWHVISKALLPEALPALLAGVTLTVVMLIGFSSMAGVIGGGGLGDLAIRYGYQRFNNEVMAATVLILVALVQGVQTLGDRLVRRLAHRR
>NZ_CP013940.1|WP_023899219.1|2990294_2991086_+|ATP-binding-cassette-domain-containing-protein
MITLDGLSKTYAGEGRPALDDVSLAIPQGAVYGILGRSGAGKSTLLRCLNLLERPTTGHIIMNGVDITRLDDRALRQHRQRTAMVFQHFNLLHARTVADNVAVPLEIAGVPRTARRERVADLLALVGLMDKADAFPSRLSGGQKQRVGIARALAARPDVLLCDEATSALDPETTASILALLADINRQLGLTIVLITHELEVVKAICDHAALLENGHLVESGRLADLLTAPWSVLRQTLVRDNAAWQAFLRRHGVEERIWCEVA
>NZ_CP013940.1|WP_007781439.1|2999860_3000154_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTESVPPRLRGRLAIWLLELRAGVYVGDVSRRVREMIWHQINKLAEEGNVVMAWATNHESGFDFQTYGVNRRIPVDLDGLSLVSFLPLENQ
>NZ_CP013940.1|WP_007781436.1|3000153_3001071_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSFVPLNPIPLNDRTSMIFLQYGHLDVLDGAFVLVDKTGVRTHVPVGAIACIMLEPGTRVSHAAIRLASQVGTLLVWVGEAGVRLYASGQPGGARADKLLYQAKLALDETLRLKVVRKMYELRFGEPPPARRSVEQLRGIEGARVRQTYALLAKRYGVKWNGRRYDPKDWEKGDVVNQCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFDAVVPKAFEIAARHPEQPDREVRLACRDIFRSEKLTGKLIPLIETVLAAGEIEPPQPATDMLPPAIPQADSLAEAGFRSR
>NZ_CP013940.1|WP_007781434.1|3001067_3001718_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKITLPTSRLTPERLMEMMARGEYVMHQWLWELFPGVAQRQYLYRRETLQNGFCFYLLSASAPERTHPLFEIQTRLFAPALDEGAALRFSLRANPVITRNGKRHDVLMNAKREVRPFSQRGEVWGKQEQAALAWLEAQGDKGGFRLSQACVAAYRQQQVMKKRGELIQFSTVDYEGALTVTDPAQFIARLHEGYGKCRAFGCGLMLIKPGDGV
>NZ_CP013940.1|WP_023899228.1|3001699_3002452_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MNRYLIFQLQGPMASWGEIAVGEVRHTRALPGRSALLGLLAAALGIRRDDEAALNALNQHYQFIVCAGKSSAWARDYHTVQVPREARKVRYFIRKDELRDAQMLVTTVSCRDYYADGYWLVAVAATPGAPYTLEALQTALRAPVFPLYLGRKSHPLGLPLWPHLCEGEAASLLREAQARYSAALSELNPALSALAQFHPHLWWEGEHDGLTADEIQIWRDQPLSRRRWDFDIRTVQQGRLTQEATCISQK
>NZ_CP013940.1|WP_007781432.1|3002461_3003535_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVTIGGASRLRVSSQSLKRAWRTSELFEAALGGHIGTRTARIGREAAEIMLAGGIAQAKAIEWGGAIAACFGKVKSEKDKKKLEKDPLINTDTEQLAHVSPTERESVHALARTLAVEKRAPTVDELNFLRKDAMAVDIALFGRMLASTPEHNIEAACQVAHAFGVGETLMEDDFFTAVDDLREAAAEDAGAGHIGELGFGSALFYTYLCIDRDRLLENLNGDEQFMAKTLRALGECTLKISPTGKQNSFASRAYASWALAEKSTEQPRSLAAAFWEPVTGHDQLDEAVRRITTLRDNMNKVYGGGATPCAVLYGDKGEGSVAQLLDFISA
>NZ_CP013940.1|WP_007781431.1|3003546_3004152_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSILSQAHRESLLKWYALLNEQQGRRLRASLRRSHTLNEVWLSEGFRSLAARVPTLWNVPGREWRFCALGIVAALAAHVKTVDTRASFAEQLGHKEGNHAVMSELRFRRLSQARTQEELFRQLRRAVQLLRGVVNLPDLAEGVFRWCAEEDERERRAARRRAPTDYIRVRWALDYYMAGNPSDAPDAENTDLPADTATTQE
>NZ_CP013940.1|WP_007781430.1|3004152_3005709_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSSLITTKWLPVIYRDGTRGKIAPLDLADENILDLILPRPDFQGAAWQFLLGLLQTALAPKDAESWEDIWEDGLTAEAIRNALAPLEKLFEFCPDTPSFMQDFEPLDGESVALAQLLPETPGAQTLKLNKDHFIKRGTTEKLCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPMTTLLELHRYQGERPALWRRLWLNILPQREGRLPRPACYDARVFPWLAPTRTSEKAIVTPEQADALQAYWGMPRRIRVDFSTTLPGTCDLCGEPGDALLTSMTVKNYGVNYVGWMHPLTPHRIPKKEGGEMFSVKGQPGGLLWRDWLGLMMESESDNNREQPARIVKIRQQKPLPGAETGLWCFGYDFDNMKARCWYEHHLPFLQLPESQQPFIRQTLSDAARVATLMLSKLRSALKEAWFGEGATVRGDFSFIDVDFWQQTQSRFLELVEAVKADTSGDNRALLSAWNSDIWRYTRRYFDDHALTNPQERTEFADIMKARKKFFTQAKPAAKGARAKKTQEAN
>NZ_CP013940.1|WP_032983424.1|3006061_3008695_-|CRISPR-associated-helicase/endonuclease-Cas3
MSGYLYWGKSRKGENHQGDDYHLLQWHSLDVAACGYVMVMENHFNAASLFAALGIDDRETAATFFAWLLCWHDIGKFARLFQQQYRCDALACGLRDVSDSRHHHTVTGTWLWQNHLGDCVAQGMTGPLSARERKRVLDRWMPAIIGHHGKPVTCENCHNDFLPEDIAAARAFAGAVSALFPSVALPTLWKDDNWRETFPAKSWLVSALTVLADWTGSANLHFPWVAQAMPFEAYWARAVKQAQRALRLLPPASDVAPFNGIETLFPFITRPTPLQQKALEMDIHARGPHLIILEDVTGAGKTEAALVLAHRLMAAGQARGLYIGLPTMATANAMYARMSQAWLRLYREGSHPSLVLAHSARKLSAGFNASVWARELLPNDSGDEAAAYEGCAAWFAQSPKKALLAETGVGTLDQAMMAVMAFKHQNLRLLGLNDKVLIADEIHSYDAYMSHVVEKLVETRARYGNATILLSATLSQAQRDRLIAAFYRGLNTTRESPRLGPDDYPWITHLHAQGIDGQRVATRAQVQRRVAIGWMEDDDACFDKIETVAREGGCIGWIRNSVDDAVNSYRELIRRGNIPEENIILFHSRFAFIDRNDKEQTTLEWFGKQNAVNRSGKVIISTQVIEQSIDIDLDYLISDLAPVDLLIQRAGRLQRHSRDKQGQLKLTGADERPAPRLDILAPRWQAQPDEKWLTSAMRNTSYVYPAHSRLWLTQRVLREQGEIKMPEAARLLIEAVYGEEIDVPEGMKRSEDAALADYYCQRAIASKYEISLDVGYSVESAELWGPDVSTRIGELTIDLWLARDTPQGIMPYAQGDNAWEMSALRVRKSWWEKHRGEFTLLCGEALSQWCREQRKPEAVVILLPGGYSAKEGLIGEV
>NZ_CP013940.1|WP_023899231.1|3008900_3009212_+|MGMT-family-protein
MNHHDTFAQRVYQIVAAIPEGCVTTYGEVARLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGEISLTGPDLQRQRQALLAEGVQVSGKGEIDLARYGWRY
>NZ_CP013940.1|WP_007781426.1|3009243_3009816_-|glycoprotein-polysaccharide-metabolism
MKLVHMLSGLAVAVALAGCAQDKSADIAVPAPNPNTSGVATKPVIKQPNVSGTVWIRQKVALPPDAVLTVTLSDATQANAPSKVLAQKVVRTEGKQAPFSFVLPFNPSDIQPNARVLLSAAITVKDKLVFITDRVQPAVNQGGTKIDLTLVPVQQTAVPVQSGGGAVTSVPSTSPTQVTPSSAVPAPTTY

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Crispr_ID: NZ_CP013940_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_13

3026484-3027061

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CRISPRCasFinder
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CRT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	PILER-CR

9 spacers

The CRISPR arrays of NZ_CP013940_13

>merge|NZ_CP013940|13|3026484-3027061|CRISPRCasFinder,CRT,PILER-CR
CGGCTTATCCCCGCTCGCCCGGGGAACAGTGGTGGCCAGGAAAAGCCTACGACGACGTGTTCGGTTTATCCCCGCTCTCGCGGGGAACAGTAAATCCCCCATTTATCAGGAAATAGATAGTTCGGTTTATCCCCGCTCGCGCGGGGAACAGTGTCGCCAAAGTTTTTTGTTTTTATTTTGTCGCGGTTTATCCCCGCTCGCGCGGGGAACAGAGCGCGTCGTATAACTGGTCGTCTGTGTATTCCGGTTTATCCCCGCTCGCGCGGGGAACAGGGCGCTGGCCGTAGGTGTTGAAGAGTGGTGCGCGGTTTATCCCCGCTCTCGCGGGGAACAGTGCGTTAAGTATCGCCTGTTCGCGGCTTAATTCGGTTTATCCCCGCTCGCGCGGGGAACAGGTTAAACGCGGAACGGCTGAATTAGCCGATAACGGTTTATCCCCGCTCGCGCGGGGAACAGTAGCGCGCTGATATTGAGCCTCAGCCTCCCTGCGGTTTATCCCCGCTCGCGCGGGGAACAGATATCGTCCCCGCATGCCATCCGTGCAATTTACGGTTTATCCCCGCTCGCGCGGGGAACAG

>NZ_CP013940|13|13|3026484-3027061|CRISPRCasFinder
CGGCTTATCCCCGCTCGCCCGGGGAACAG	TGGTGGCCAGGAAAAGCCTACGACGACGTGTT
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TAAATCCCCCATTTATCAGGAAATAGATAGTT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGTCGCCAAAGTTTTTTGTTTTTATTTTGTCG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	AGCGCGTCGTATAACTGGTCGTCTGTGTATTC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGCGCTGGCCGTAGGTGTTGAAGAGTGGTGCG
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TGCGTTAAGTATCGCCTGTTCGCGGCTTAATT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GTTAAACGCGGAACGGCTGAATTAGCCGATAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TAGCGCGCTGATATTGAGCCTCAGCCTCCCTG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ATATCGTCCCCGCATGCCATCCGTGCAATTTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG

>NZ_CP013940|13|2|3026484-3027061|CRT
CGGCTTATCCCCGCTCGCCCGGGGAACAG	TGGTGGCCAGGAAAAGCCTACGACGACGTGTT
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TAAATCCCCCATTTATCAGGAAATAGATAGTT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGTCGCCAAAGTTTTTTGTTTTTATTTTGTCG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	AGCGCGTCGTATAACTGGTCGTCTGTGTATTC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGCGCTGGCCGTAGGTGTTGAAGAGTGGTGCG
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TGCGTTAAGTATCGCCTGTTCGCGGCTTAATT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GTTAAACGCGGAACGGCTGAATTAGCCGATAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TAGCGCGCTGATATTGAGCCTCAGCCTCCCTG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ATATCGTCCCCGCATGCCATCCGTGCAATTTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG

>NZ_CP013940|13|2|3026545-3027061|PILER-CR
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TAAATCCCCCATTTATCAGGAAATAGATAGTT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGTCGCCAAAGTTTTTTGTTTTTATTTTGTCG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	AGCGCGTCGTATAACTGGTCGTCTGTGTATTC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGCGCTGGCCGTAGGTGTTGAAGAGTGGTGCG
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TGCGTTAAGTATCGCCTGTTCGCGGCTTAATT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GTTAAACGCGGAACGGCTGAATTAGCCGATAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TAGCGCGCTGATATTGAGCCTCAGCCTCCCTG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ATATCGTCCCCGCATGCCATCCGTGCAATTTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_004387733.1\|3037398_3037716_-\|transcriptional-regulator-BolA	unknown	unknown	gnl\|CDD\|183243
NZ_CP013940.1\|WP_032983423.1\|3023055_3024786_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226909
NZ_CP013940.1\|WP_038882563.1\|3028312_3030190_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182731
NZ_CP013940.1\|WP_032967976.1\|3018805_3019243_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_007781382.1\|3027797_3028166_-\|exported-protein	unknown	unknown	gnl\|CDD\|129520
NZ_CP013940.1\|WP_004387728.1\|3030886_3033241_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|182730
NZ_CP013940.1\|WP_004387552.1\|3012613_3012952_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|182629
NZ_CP013940.1\|WP_004387729.1\|3033427_3034702_-\|ATP-dependent-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP013940.1\|WP_004387734.1\|3038014_3038593_+\|lipoprotein	unknown	unknown	gnl\|CDD\|183242
NZ_CP013940.1\|WP_032983422.1\|3025503_3026340_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293828
NZ_CP013940.1\|WP_007781387.1\|3024815_3025511_+\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|182967
NZ_CP013940.1\|WP_007781367.1\|3030404_3030677_-\|DNA-binding-protein-HU-beta	unknown	unknown	gnl\|CDD\|259853
NZ_CP013940.1\|WP_004387554.1\|3016787_3017249_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP013940.1\|WP_023899235.1\|3013183_3014962_-\|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182733
NZ_CP013940.1\|WP_004387730.1\|3034825_3035449_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP013940.1\|WP_007781394.1\|3022143_3022962_-\|HMP-PP-phosphatase	unknown	unknown	gnl\|CDD\|185080
NZ_CP013940.1\|WP_023899237.1\|3014954_3016730_-\|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182732
NZ_CP013940.1\|WP_007781383.1\|3027274_3027673_-\|YbgC/FadM-family-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|129161
NZ_CP013940.1\|WP_004387731.1\|3035749_3037048_-\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP013940.1\|WP_007781408.1\|3017364_3018411_+\|PLP-dependent-cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|223110

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_004387733.1\|3037398_3037716_-\|transcriptional-regulator-BolA	gnl\|CDD\|183243	PRK11628, PRK11628, transcriptional regulator BolA; Provisional.	2.56413e-75
NZ_CP013940.1\|WP_032983423.1\|3023055_3024786_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226909	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	0
NZ_CP013940.1\|WP_038882563.1\|3028312_3030190_-\|peptidylprolyl-isomerase	gnl\|CDD\|182731	PRK10788, PRK10788, periplasmic folding chaperone; Provisional.	0
NZ_CP013940.1\|WP_007781382.1\|3027797_3028166_-\|exported-protein	gnl\|CDD\|129520	TIGR00426, Hypothetical_protein_ybaV_precursor., competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model. [Cellular processes, DNA transformation].	1.5327e-26
NZ_CP013940.1\|WP_004387728.1\|3030886_3033241_-\|endopeptidase-La	gnl\|CDD\|182730	PRK10787, PRK10787, DNA-binding ATP-dependent protease La; Provisional.	0
NZ_CP013940.1\|WP_004387552.1\|3012613_3012952_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|182629	PRK10665, PRK10665, P-II family nitrogen regulator.	1.07685e-65
NZ_CP013940.1\|WP_004387729.1\|3033427_3034702_-\|ATP-dependent-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_CP013940.1\|WP_004387734.1\|3038014_3038593_+\|lipoprotein	gnl\|CDD\|183242	PRK11627, PRK11627, hypothetical protein; Provisional.	3.11964e-134
NZ_CP013940.1\|WP_032983422.1\|3025503_3026340_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293828	cd07742, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	8.24864e-121
NZ_CP013940.1\|WP_007781387.1\|3024815_3025511_+\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|182967	PRK11106, PRK11106, queuosine biosynthesis protein QueC; Provisional.	0
NZ_CP013940.1\|WP_007781367.1\|3030404_3030677_-\|DNA-binding-protein-HU-beta	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	7.3754e-45
NZ_CP013940.1\|WP_004387554.1\|3016787_3017249_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.6465e-50
NZ_CP013940.1\|WP_023899235.1\|3013183_3014962_-\|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182733	PRK10790, PRK10790, SmdB family multidrug efflux ABC transporter permease/ATP-binding protein.	0
NZ_CP013940.1\|WP_004387730.1\|3034825_3035449_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.88422e-159
NZ_CP013940.1\|WP_007781394.1\|3022143_3022962_-\|HMP-PP-phosphatase	gnl\|CDD\|185080	PRK15126, PRK15126, HMP-PP phosphatase.	0
NZ_CP013940.1\|WP_023899237.1\|3014954_3016730_-\|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182732	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein.	0
NZ_CP013940.1\|WP_007781383.1\|3027274_3027673_-\|YbgC/FadM-family-acyl-CoA-thioesterase	gnl\|CDD\|129161	TIGR00051, Acyl-CoA_thioesterase_YbgC, acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon. [Unknown function, General].	2.20104e-44
NZ_CP013940.1\|WP_004387731.1\|3035749_3037048_-\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	0
NZ_CP013940.1\|WP_007781408.1\|3017364_3018411_+\|PLP-dependent-cysteine-synthase-family-protein	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	4.3181e-107

>NZ_CP013940.1|WP_032983422.1|3025503_3026340_-|MBL-fold-metallo-hydrolase
MRVHHLNCGCMCPLGGALYDGFSKGLHAHLICHCLLIETDHHGLVLVDTGFGCDDMRHPGRRLPLFFRALNNIQYRESLTALHHINALGFKPEDVRHIVLTHLDFDHAGGLSDFPQAQVHLMQREMTAADGRGTWLDSARYRPGQWGNRSGWHGYHPHGEAWFGFSAVRALDGLPPEILLIPLPGHTEGHAGVAIDTPQGWLLHGGDAWFYRDEMAADPHCTPGLRFYQWMMQKDKAARLANQKRLRLLAADASAGVTLFCSHDAREFERLSGKNLAI
>NZ_CP013940.1|WP_007781387.1|3024815_3025511_+|7-cyano-7-deazaguanine-synthase-QueC
MKRAVVVFSGGQDSTTCLIQALHQYDEVHCVTFDYGQRHRAEIDVASTLAASLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYDPDAEGLPSTFVPGRNILFLTLASIYAYQVQAEAVITGVCETDFSGYPDCRDEFVKALNHAVALGMARDVRFETPLMWLNKAETWALADYWGKLDVIRQQTLTCYNGIQGDGCGECAACHLRANGLSQYQDDKPAIMAAMKQKTGLK
>NZ_CP013940.1|WP_032983423.1|3023055_3024786_+|peptide-ABC-transporter-substrate-binding-protein
MRLLNRLNQFQRLWQPSEGAPQAVTISELAARCFCSERHVRTLLRQLQQQGWLRWHAQSGRGKRGELTFLVSPHTVRAGMMETVLRQGQTHNALALAQLASGQLRQLLHPFLGGQWHNDTPTLRIPYYRPLEPLKPGFLPGRAEQHLARQIFSGLTRFNPHTARPEGDMAHHWSVSPDGLSWRFYLRPTLHWHNHEPIDAWQLRQRLQQLLELETLRQLFASVREITVEHKHCLRVDLTRPDHWLAWRLASHGCYLAHPEDTTIGSGPFRLATFTPELVRIESHDRCHLGHPLLNAVEYWITPGLFDSALGTSCRHPVQIAIGQQEELVHLRPVSNSISLGFCYLGIRQNGRLSYAQARWLMQLVHRSGMIDSLPLDEHLITPSNALLPGWHLPQWPEEPPPPLPPSLTLVYHLPVELPVMARQLQHELAQRGCALTLHFHNAKNWDGCTQLAQADIVMGDRLIGEAPEYTLEQWLRCDPLWRHLLTGPQRAHLDATLDAVQSHPDEQSRNAALREVWQTLMHDAVITPLFNYRYQISAPPGVNGIELNALGWFDFSRAWLPPPQEAGGHASTALP
>NZ_CP013940.1|WP_007781394.1|3022143_3022962_-|HMP-PP-phosphatase
MARLAAFDMDGTLLMPDHQLGETTQRALHRLHQRGVTMAFATGRHLLEMRQMLQKIALEAFLITGNGTRIHAPSGELLFAEDLSPQVAEAVLHGHWDTPASLHVFNDSGWLTDNDDPALLDAHAWSGFRYQLTDLKRLPAHQVTKICFVADHDTLRELRVKLSQALGSQAHICFSALDCLEVLPPGCNKGAALQALSQHLGITMADCMAFGDAMNDREMLSLAGKGLIMGNAMPQLLAELPHLPVIGHCSRQAVAHYLTHWLDHPHLDYSPE
>NZ_CP013940.1|WP_032967976.1|3018805_3019243_+|hypothetical-protein
MLDKKIIYIAAMMMSLSACTTAPKNAPVKSNVSQTPVVPAQPAPTPVESMNQLAPVSSDTKLRLERCLAETKHLSDINREKYREQIDTLYRSIKATQYYASISNDLSNIMVETITPLYQFRVNDACNTISQSLLAELKKGAGLAK
>NZ_CP013940.1|WP_007781408.1|3017364_3018411_+|PLP-dependent-cysteine-synthase-family-protein
MSSTWVHHAINEIHADARRSADTHLIRFTLPAFPGIWFYLKDESTHPTGSLKHRLARSLFLYGLSNGWIREGTPIIEASSGSTAVSEAWFARMLGLPFIAVMPACTARRKVEQIEFYGGRCHFVQSACEIYEASEVLARELRGRYMDQFTYAERATDWRGNNNIADSIFRQMAGEPHPVPDYIVMSAGTGGTSATIGRYLRYQGHETRLMVVDPENSVFYDYWQQRDSRLKSSVGSRIEGIGRPRVEPSFIPDVIDEMLKVPDAASVAAMQWLGELLGRKVGASTGTNMWGALQLAARMREEGRSGAIVTLLCDSGERYLETYHNPEWVAASIGDISPWRAAIQELMR
>NZ_CP013940.1|WP_004387554.1|3016787_3017249_-|Lrp/AsnC-family-transcriptional-regulator
MLDKIDCRLLALLQEDATLSLQALADAVNLTTTPCWKRLRRLEDDGYIIKRVALLDPEKLGLGLTAFMLIKTQHHSSDWYSQFVAVVEEMPEVLGFWRMAGEYDYLMRVQVADMKSYDDFYKRLVNRVPGLSDVTSSFAMEQIKYTTALPLKR
>NZ_CP013940.1|WP_023899237.1|3014954_3016730_-|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein
MRLFAQLSWYFSREWRRYLGAVALLIVIAILQLVPPKVVGYVVDGVTQHHYTTRQVLLWVGLLVVIAIVVYLLRYVWRVLLFGASYQLAVELRRDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLVIMCTQISWQLTLLALLPMPVMAIVIKRYGDQLHHRFKAAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFSEDARDTGVKNLRVARVDARFDPTIYIAIGMANLLAIGGGSWMVMNGTLTLGQLTSFTMYLGLMIWPMLALAWMFNIVERGSAAYSRIRALLAEAPVVKDGQASLPAGRGVLNVAIREFRYPHAARDTLRNVQFSLKPGQMLGLCGPTGAGKTSVLSLIQRHFDLDQGEITFHDVPLDRVHLDDWRGRLAVVNQTPFLFSDTVASNIALGKPDATQEEIEQAAKLACVHDDILRLPQGYDTQVGERGVMLSGGQKQRISIARAMLLEAEILVLDDALSAVDGRTEHQILHNLRQWGENRTVIISAHRLSALTEASEILVLQHGQVAQRGRHEALAAQPGWYRDMYRYQQLEAALDDAPEENDEEALNA
>NZ_CP013940.1|WP_023899235.1|3013183_3014962_-|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein
MRNTVKSWPTLKRLLAYGSPWRKPLGGAVLMLWVAAAAEVTGPALISYFIDNLVAKNQLPLGLVAGLAFAYVLLQILAAGLHYWQALLFNQAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAITIFPAVLIVMMIYQRYSTPIVRRVRTYLADINDGFNEVISGMNVIQQFRQQTRFGERMNAASHSHYLARMQTLRLDGFLLRPLLSLFSALVLCGLLMLFGFTAVGTIQVGVLYAFISYLGRLNEPLIELTTQQSILQQALVAGERVFELMDRPRQDYGHDERPLTSGAIEVDNVSFAYRDDQLVLKDISLSVPSRHFVALVGHTGSGKSTLASLLMGYYPLTSGEIRLDGRPLASLSHGVLRKGVAMVQQDPVVLADSFFANVTLGRDIDEARVWEVLETVQLAELARGMSEGIHTRLGEQGNNLSVGQKQLLALARVLVDAPQILILDEATANIDSGTEQAIQHALAAIRPHTTLVVIAHRLSTIVEADTILVLHRGQAVERGSHQALLEARGRYWQMYQLQLAGEELQAAAKEEPLSA
>NZ_CP013940.1|WP_004387552.1|3012613_3012952_-|P-II-family-nitrogen-regulator
MKLVTVVIKPFKLEDVREALSTIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDVAIADDQLDEVIEVVSKAAWTGKIGDGKIFVAELQRVIRIRTGEADEAAL
>NZ_CP013940.1|WP_007781383.1|3027274_3027673_-|YbgC/FadM-family-acyl-CoA-thioesterase
MQTQIKVRGYHMDVYQHVNNARYLEFLEEARWDGLENDESFKWMMANNIAFIVANININYRRPAVLGDLLTVTSHVKQLNGKSGVLSQVITLEPEGEVVADALITFVCIDLKTQKALPIEGELREKLEKITG
>NZ_CP013940.1|WP_007781382.1|3027797_3028166_-|exported-protein
MKRGIKALCLAVALAGGTFCTAAIATPSAGKSQAEPVKEKPAAAAPQAKPETMAETPEETVSINTATADELAQAMNGVGKKKAQSIVSYREEYGPFKSIEDLKQVPGMGNSLVERNLSRIRL
>NZ_CP013940.1|WP_038882563.1|3028312_3030190_-|peptidylprolyl-isomerase
MMDNLRAAANHVVLKIILGLIILSFVLTGVSNYLIGGNSNYAAKVNDQEISRAQLENAVNAERNNLERRLGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLNISDEQVRQAIFKNPAFQSDGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVVGSDFILPGESDQFAALFAQQRQVRTATIAVDALAQKQQVSEQEIKDYYQQHTNNFLSPEQFRISYIKLDAAALAENASEEEIQAYYDKHQDEFGQPQRNRYSLIQTKTEDEAKAILTQLKQGADFATLAKEKSVDVITARNGGDMGWLEPGTTPDEFKNAGLKEKGQFSDVIKSSVGFLIVRLDDITPATVKPLSEVHNDISAKVKQEKALDAFFALQRKVSDAANNDNESLASAEKAAGVKAVETGWFSRDAVPEEINFKPVTDAVFGGNLLGENGAPGSNSDIITVDGDRAFVLRITDHKPQAEKPLAEVKDQVTALVKHQKALKAANEQAQNLLSTLKAGKGDEALKAAGIAFSPAKTFERTTQDTLTQPVFALPLPAKDKPSYGIGNDLQGNVVLLALDDVRSGTMPEDQKKAMAQRLTQNNAEIAFDALLKGLRKDAKIKLGDAGTSPQQ
>NZ_CP013940.1|WP_007781367.1|3030404_3030677_-|DNA-binding-protein-HU-beta
MNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQAGDEVALVGFGTFSVRERAARTGRNPQTGKEITIAAAKVPGFRAGKALKDAVN
>NZ_CP013940.1|WP_004387728.1|3030886_3033241_-|endopeptidase-La
MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDNDKKVMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARITTLSDNGDHFAAKAEYLESPAIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLSDKQSVLEMSDINERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFNDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKENEINVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKRIEITGENLKDFLGVQRFDYGRADSENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINSDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPDENKRDLEEIPENVIADLDIHPVKRIEEVLTLALQNAPYGMQVATAK
>NZ_CP013940.1|WP_004387729.1|3033427_3034702_-|ATP-dependent-protease-ATP-binding-subunit-ClpX
MTDKRKDSSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRSHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKGKSQKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALEAIAKKAMSRKTGARGLRSIVEAALLETMYDLPSMEEVEKVVIDESVIAGQSEPLLIYGKPEAQQASGE
>NZ_CP013940.1|WP_004387730.1|3034825_3035449_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MSYSDERDQFAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDQMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIQPDVSTICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQPLEQIERDTERDRFLSAGEAVEYGLVDSIMTHRN
>NZ_CP013940.1|WP_004387731.1|3035749_3037048_-|trigger-factor
MQVSVETTQGLGRRVTITIAADSIENAVKSELVNVAKKVRIDGFRKGKVPMNVVAQRYGASVRQDVLGDLMSRHFVDAIIKEKINPAGAPNYVPGEYKLGEDFTYAVEFEVYPEVELKGLESIEVEKPVVEVTDADVDTMLDTLRKQQATWKDKDGAADAEDRVTIDFTGSVDGEEFEGGKATDFVLAMGQGRMIPGFEEGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFVINLKKVEERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMERELKGAVRNRIKSQAIEGLVNANNIDVPAALIDGEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTHELKADEDRVKALIEEMASAYEDPSEVIEFYSKNNELMDNMRNVALEEQAVEAVLAKAKVTEKPTSFNELMNQQA
>NZ_CP013940.1|WP_004387733.1|3037398_3037716_-|transcriptional-regulator-BolA
MMIREQIEEKLKAAFEPVFLDVVDESYRHNVPAGSESHFKVVLVSDRFVGERFLNRHRLIYGILSEELASTVHALALHTYTLKEWEGLQDTVLPSPACRGAGTLA
>NZ_CP013940.1|WP_004387734.1|3038014_3038593_+|lipoprotein
MLKKVLFPLVALFMLAGCATPPTTIEVSPKITLPQQDPSLMGVTVSINGADQRQDQALAKVTRDNQLVTLTASRDLRFLLQEVLEKQMTSRGYMIGPSGAVDLQIIVNQLYADVSQGNVRYNIATKADISIIATAKTGNKMTKNYRASYSVEGAFQASNKNIADAVNSVLSDTIADMAQDTSIHEFIKQNAR

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Crispr_ID: NZ_CP013940_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_14

3276917-3277038

Orphan

Consensus_repeat	Method
AGTCAAACTCCAGTTCCACCTGCTCCGAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_14

>merge|NZ_CP013940|14|3276917-3277038|CRISPRCasFinder
AGTCAAACTCCAGTTCCACCTGCTCCGAACCTGGCAGGCCACGCGGATTGAATCCAGCGATTCAGGGGCCTGGCACCTGATGCAACGCATCAGTCAAACTCCAGTTCCACCTGCTCTGAACC

>NZ_CP013940|14|14|3276917-3277038|CRISPRCasFinder
AGTCAAACTCCAGTTCCACCTGCTCCGAACC	TGGCAGGCCACGCGGATTGAATCCAGCGATTCAGGGGCCTGGCACCTGATGCAACGCATC
AGTCAAACTCCAGTTCCACCTGCTCTGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_007776544.1\|3289071_3289929_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|183240
NZ_CP013940.1\|WP_007776982.1\|3271709_3273848_-\|lysine-decarboxylase-LdcC	unknown	unknown	gnl\|CDD\|185297
NZ_CP013940.1\|WP_007776547.1\|3284645_3285140_-\|molecular-chaperone-Skp	unknown	unknown	gnl\|CDD\|182724
NZ_CP013940.1\|WP_007776990.1\|3268339_3268885_-\|YaeQ-protein	unknown	unknown	gnl\|CDD\|377782
NZ_CP013940.1\|WP_007776545.1\|3287707_3289060_-\|sigma-E-protease-regulator-RseP	unknown	unknown	gnl\|CDD\|182723
NZ_CP013940.1\|WP_004385445.1\|3269091_3269292_+\|YaeP-family-protein	unknown	unknown	gnl\|CDD\|179901
NZ_CP013940.1\|WP_007776993.1\|3267920_3268343_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NZ_CP013940.1\|WP_004386134.1\|3289941_3290700_-\|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|182326
NZ_CP013940.1\|WP_007776715.1\|3280517_3281114_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
NZ_CP013940.1\|WP_007776673.1\|3282252_3283041_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NZ_CP013940.1\|WP_032967855.1\|3269893_3271198_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|182626
NZ_CP013940.1\|WP_004386127.1\|3283044_3283500_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP013940.1\|WP_007697441.1\|3271262_3271652_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|183156
NZ_CP013940.1\|WP_032983389.1\|3283616_3284642_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	unknown	unknown	gnl\|CDD\|234858
NZ_CP013940.1\|WP_004386121.1\|3275942_3276902_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_CP013940.1\|WP_023899389.1\|3281110_3282253_-\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NZ_CP013940.1\|WP_032976962.1\|3285262_3287677_-\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|236834
NZ_CP013940.1\|WP_023899387.1\|3273997_3275779_-\|endochitinase	unknown	unknown	gnl\|CDD\|381595
NZ_CP013940.1\|WP_007776988.1\|3269278_3269539_+\|Rho-binding-antiterminator	unknown	unknown	gnl\|CDD\|183241
NZ_CP013940.1\|WP_007776986.1\|3269586_3269901_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|225418

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_007776544.1\|3289071_3289929_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|183240	PRK11624, cdsA, phosphatidate cytidylyltransferase.	0
NZ_CP013940.1\|WP_007776982.1\|3271709_3273848_-\|lysine-decarboxylase-LdcC	gnl\|CDD\|185297	PRK15399, PRK15399, lysine decarboxylase.	0
NZ_CP013940.1\|WP_007776547.1\|3284645_3285140_-\|molecular-chaperone-Skp	gnl\|CDD\|182724	PRK10780, PRK10780, molecular chaperone Skp.	8.88425e-82
NZ_CP013940.1\|WP_007776990.1\|3268339_3268885_-\|YaeQ-protein	gnl\|CDD\|377782	pfam07152, YaeQ, YaeQ protein. This family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH, a specialized transcription elongation protein. YaeQ is known to compensate for loss of RfaH function.	4.99029e-96
NZ_CP013940.1\|WP_007776545.1\|3287707_3289060_-\|sigma-E-protease-regulator-RseP	gnl\|CDD\|182723	PRK10779, PRK10779, sigma E protease regulator RseP.	0
NZ_CP013940.1\|WP_004385445.1\|3269091_3269292_+\|YaeP-family-protein	gnl\|CDD\|179901	PRK04964, PRK04964, hypothetical protein; Provisional.	4.322e-34
NZ_CP013940.1\|WP_007776993.1\|3267920_3268343_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	2.51587e-70
NZ_CP013940.1\|WP_004386134.1\|3289941_3290700_-\|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase	gnl\|CDD\|182326	PRK10240, PRK10240, (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase.	6.29229e-169
NZ_CP013940.1\|WP_007776715.1\|3280517_3281114_-\|ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	1.35815e-115
NZ_CP013940.1\|WP_007776673.1\|3282252_3283041_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	6.96503e-173
NZ_CP013940.1\|WP_032967855.1\|3269893_3271198_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|182626	PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional.	0
NZ_CP013940.1\|WP_004386127.1\|3283044_3283500_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	2.84423e-93
NZ_CP013940.1\|WP_007697441.1\|3271262_3271652_-\|VOC-family-protein	gnl\|CDD\|183156	PRK11478, PRK11478, VOC family protein.	1.04361e-95
NZ_CP013940.1\|WP_032983389.1\|3283616_3284642_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	gnl\|CDD\|234858	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional.	0
NZ_CP013940.1\|WP_004386121.1\|3275942_3276902_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_CP013940.1\|WP_023899389.1\|3281110_3282253_-\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	0
NZ_CP013940.1\|WP_032976962.1\|3285262_3287677_-\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|236834	PRK11067, PRK11067, outer membrane protein assembly factor YaeT; Provisional.	0
NZ_CP013940.1\|WP_023899387.1\|3273997_3275779_-\|endochitinase	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	6.99515e-71
NZ_CP013940.1\|WP_007776988.1\|3269278_3269539_+\|Rho-binding-antiterminator	gnl\|CDD\|183241	PRK11625, PRK11625, Rho-binding antiterminator; Provisional.	1.32493e-54
NZ_CP013940.1\|WP_007776986.1\|3269586_3269901_-\|cytochrome-c	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	2.77525e-29

>NZ_CP013940.1|WP_004386121.1|3275942_3276902_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMEMAERFNMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLKVPVICTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSVIPEPLGGAHRNPEAMAQSLKTQLLADLADLDVLSKDDLLNRRYQRLMSYGYA
>NZ_CP013940.1|WP_023899387.1|3273997_3275779_-|endochitinase
MEIAKIAAIGAAGVLAGAQALAAPLLSSSAPYTLNASDLTKKEQELTNFPLMQSVKNAIRTLDNAQVEQIAPGRAANPDNVKRVEKILSAQDWEYLFPLRAPEYTYNNFLKAVGKFPAVCGSYSDGRDADAICRKSLATMFAHFAQETGGHESWREQPEWRQALVYLREMGWTEGQKGGYNGECNPDTWQGQTWPCGKDKDGDYMSYFGRGAKQLSYNYNYGPFSDAMYGDVRPLLDKPEMVADTWLNLASAIFFFVYPQPPKPGMLHVIDGTWVPNEHDKESGLVPGFGVTIQIINGGVECGGDAENAQSLNRIAYYKEFAKYLKVPVPADEVLGCKKMKQFDAGGAGALPIYWEMDWSWSTTTPDGQAYACQLVGYQTPFSAFKEGDYAKCVQNHFNVNIVNDASGGTTPAPQPAPQPQPQPQPQPSPTPSANVAPVARISGPVGAVDAGSKVSLSATGSSDANGDALTYTWMAQTGQTLSGKDKSVVTFNVPESASDAQYTISLKVDDGKLSDTTSYILNVKAKAKTPDAGPVSYPSWTASQSWKPGDIVLNQGALYQCKPFPAGGWCSVAPAYYEPGAGLNWQDAWDAL
>NZ_CP013940.1|WP_007776982.1|3271709_3273848_-|lysine-decarboxylase-LdcC
MNIIAIMGPHGVFYKDEPMKELQAALQQQGFQLIWPKNSNDLLKFIEHNPRICGVIFDWDEYSLDLCCEINQLNEYLPLYAFINTHSTLDVSANEMRMALWFFEYSLGIADDIATRIRQYTQEYLDNITPPFTKALFTYVKEGKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIIGMYAAHAGSTVLIDRNCHKSLTHLLMMSDIVPLWLKPTRNALGILGGIPKREFTRESIAQKVAQTPDASWPVHAVITNSTYDGLLYNTNWIKQTLDVPSIHFDSAWVPYTHFHPIYKGKSGMSGERVPGKVFFETQSTHKMLAALSQASLIHIKGDYDEETFNEAYMMHTTTSPSYPLVASIETAAAMLRGNPGRRLINRSVERALHFRKEVQRLREESDSWFFDIWQPAEIGEADCWPITPGDDWHGFTHADRDHMYLDPVKVTILTPGMDAQGNMEKEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRVKNILPDLWAEDPDFYRNMRVQELAQGIHKLIQQHDLPDLMLRAFDVLPEMKMTPHEMYQQQVKGNVETVEIEKLIGRVSANMILPYPPGVPLVMPGEMITEESRAVLDFLLMLCSIGRHYPGFETDIHGAKCGEDGVYRVRVLKSE
>NZ_CP013940.1|WP_007697441.1|3271262_3271652_-|VOC-family-protein
MLGLKQIHHIAIIATDYHRSKAFYCDTLGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPARPSRPEACGLRHLAFSVDDVDRAVAFLESRGVTCEAVRVDPLTGKRFTFFNDPDGLPLELYQQ
>NZ_CP013940.1|WP_032967855.1|3269893_3271198_-|tRNA-lysidine(34)-synthetase-TilS
MDTSLLSALRGRRQLLVAYSGGLDSTVLLHQLVRLREAHPELRLRAIHVHHGISPNADRWAAHCQALCYRWQVPFELAYVELAQDGLGLEAQARKARYQAFAAALLPGEALVTAQHLDDQCETLLLALKRGSGPAGLAAMPAELPFAGSVLLRPLLNTPRAQLEAWGSRHQLVWIDDESNQDDRFERNFLRLRILPALEARWPHFTEAAARSAQLCGEQEQLLDELLAPELAALMDGKTLAIAPLETMSALKRAALLRRWLAALNAPMPSRATLQRIWDEVAQSREDAAPRLKCGDYEARRYQGRLWWVRARQGQRQTVLAWPDPHVALPLPAALGWLQFGEAGDAVRPPHPGETVSVRFSASGMLYIVGRERGRTLKKLWQELQVPPWQREITPILFYDEQPICAPGLFITREGQAQNEPGWRLAWHKEHNDD
>NZ_CP013940.1|WP_007776986.1|3269586_3269901_-|cytochrome-c
MIKHGMLLASLMALSVTAQAKGDAAAGEEKAVMCVACHGASGKASAPIYPNLGGQNEAYLEHALQAYKKGERSGGQAEIMKAYVSGLSDEDIANLAAYYAGQKP
>NZ_CP013940.1|WP_007776988.1|3269278_3269539_+|Rho-binding-antiterminator
MSMNDAYQPINCDDYDNLELACQHHLLLTLELKSGEVMKAKAQDLVTRKNVEYLIADEAGAVREVRLDKIASFSHPQIGTVVVSES
>NZ_CP013940.1|WP_004385445.1|3269091_3269292_+|YaeP-family-protein
MDKYCELIRQRYSQIASGELGYIPDALGCVLRALNEVASDEALSESVREQAAYAAANLLVSDYVNE
>NZ_CP013940.1|WP_007776990.1|3268339_3268885_-|YaeQ-protein
MALKATIYKAAVNVADLDRQQFLDINLTLARHPSETQERMMLRLLAWMMYADERLQFTRGLCADDEPEIWLRNDHLGIDLWIELGLPEERRLKKAVSQSQQVALFTYNDRAAQIWWQQNQDKLRQYKNLTIWYINDEQLAQLSALAQRTMTLQATLQEGVIWLSGAEQNLELHPTVWQALA
>NZ_CP013940.1|WP_007776993.1|3267920_3268343_-|aminoacyl-tRNA-hydrolase
MITFSRSVAVPDEEVTFSAIRAQGAGGQHVNKSSTAIHLRFDINASSLPDEWKARLLAASHHLITAEGVVIIKAQEYRSQEMNREAALARLVMLVRELTATQKRRKETRPTRASKVRRLEAKTHKSATKALRGKVRGMPD
>NZ_CP013940.1|WP_007776715.1|3280517_3281114_-|ribonuclease-HII
MMEFIYPHTYLVAGVDEVGRGPLVGAVVTAAVILDPLKPIVGLADSKKLSEKRRLALFDEIKEKAIAWSLGRAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLIDGNRCPALPMPSMAVVKGDSRVAEISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAPVRRALGIAS
>NZ_CP013940.1|WP_023899389.1|3281110_3282253_-|lipid-A-disaccharide-synthase
MTRPLTIALVAGETSGDILGAGLIRALKARVPNARFVGVAGPRMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTERFTALKPDVFVGIDAPDFNITLEGNLKKQGIRTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYEKFNVPCRFIGHTMADAMPLDPDKNAARDVLGIAHDARCLALLPGSRSAEVEMLSADFLKTAQRLREHYPDLEIVVPLVNAKRREQFERIKAEVAPELTAHLLDGHAREAMIASDAALLASGTAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTEFVSLPNLLAGRELVKELLQDDCEPQKLADALLPLLADGKQSHEMHDTFRKLHQQIRCNADEQAADAVLELAQ
>NZ_CP013940.1|WP_007776673.1|3282252_3283041_-|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MIEKTAFIHPTAIVEEGAVIGANAHIGPFCIVGPDVKIGEGTVLKSHVVVNGHTTIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTAQGGGLTKVGSDNLLMINAHVAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSKEALHAIRNAYKLLYRSGKTLDEVKPEIAEIAAKHPEVQPFYDFFARSTRGLIR
>NZ_CP013940.1|WP_004386127.1|3283044_3283500_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MTTETHTLHIEEILELLPHRYPFLLVDRVLDFEEGRFLRAVKNVSVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRPVVPGDQMVMEVTFEKTRRGVTRFKGVALVDGKVVCEATMMCARSREA
>NZ_CP013940.1|WP_032983389.1|3283616_3284642_-|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase
MPSIRLADLAQQLDAELHGDGDIAITGVASMQSAQEGQITFMVNPRYREQLAHCQASAVVMTEADLPFANSAALVVKNPYLTYARMAQILDTTPQPASSIAPSAVIDASARLGNNVAVGANAVIESGVELGDNVVIGPGCFVGKNSKLGAGTRLWANVSIYHDIQIGENCLIQSSTVIGADGFGYANDRGNWVKIPQLGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDEMNKRLKAVERKVTQQD
>NZ_CP013940.1|WP_007776547.1|3284645_3285140_-|molecular-chaperone-Skp
MKKWLFAAGLGLAMAASAQAADKIAVVNMGNLFQQVAQSTGVSKTLENEFKGRAGELQRMETDLQAKMQRLQRDGSTMKASERSKLEKDVMAGRQEFSSKAQQFEQDRARRSNEERGKLVTRIQSAVKKVAADQDIDLVVDANTVAYTSSDVKDITADVLKQVK
>NZ_CP013940.1|WP_032976962.1|3285262_3287677_-|outer-membrane-protein-assembly-factor-BamA
MAMKKLLIASLLFSSATVYGADGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFASGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAKIQQINIVGNRAFSTEELISNFQLRDEVPWWNVVGDRKYQKQKLQGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTINVTEGDQYKIAGVEVSGNLAGHSAEIESLTKMQPGELYNGTKVTRMEDDIKKLLGRYGYAYPRVQTQPEINDADKTVKLHVNVDSGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDVDTQRVSGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGINGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADDADLSSYTNKSYGVDGTLGFPVNEYNTLRLGLGYVHNDLSNMEPQVAMWRYLDSLGQSAKTTSDDNGFSADDFTLNYGWTYNHLDRGFFPTSGSRVNLNGKVTIPGSDNEFYKLTLDTATYVPIDEDHKWVVLGRTRWGYGDGLSGKEMPFYENFYAGGSSTVRGFQSNNIGPKAVYYSGPGLDNCDKAAGGYCSSDDAVGGNAMGVASLEFITPTPFLSEKYANSVRTSLFADAGTVWDTNWENTAAMRAAGVPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW
>NZ_CP013940.1|WP_007776545.1|3287707_3289060_-|sigma-E-protease-regulator-RseP
MLSILWNLAAFIIALGVLITVHEFGHFWVARKVGVRVERFSVGFGKALWRRTDRHGTEYVIALIPLGGYVKMLDERVEPVAPELRHEAFNNKTVAQRAAIIAAGPVANFLFAIFAYWLVFMMGVPGLKPVIGEITPNSIAANAQIEPGTELKAVDGIETPDWDAVRLELVGHIGDKNVTLSIASPGDTATMDKVLDLRQWQFEPDKEDPVASLGIRPFGPKIEPVLAQVQPKSAASKAGLQAGDRIVKVDGQPLSEWSAFVTMVRDNPARPLAIEIERQGSPLSLTLIPDTKPGNEKAEGFAGVVPKIAPLPDEYKTVRQYGPFNAIAEATEKTWQLMKLTVNMLGKLLTGDVKLNNLSGPISIAQGAGMSAEFGLIYYLMFLALISVNLGIINLFPLPVLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSILLVLLMGLALFNDFSRL
>NZ_CP013940.1|WP_007776544.1|3289071_3289929_-|phosphatidate-cytidylyltransferase
MLKYRLISAFVLIPVVIAALFLLPPMGFAIATLVVCVLAAWEWGQLSGFTSRSQRVWLALLCGLLLALMLFFLPIYQAPISVPLVEGALWASLGWWAVALLLVLFYPNSAAFWRHSKALRLVFGLLTIVPFFWGMVALRAWHYDANHYSGALWLLYVMFLVWGADSGAYMFGKMFGKHKLAPKVSPGKTWQGFIGGLLTAAIISWIYGAWADLNVAPATLLTCSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLVFRTI
>NZ_CP013940.1|WP_004386134.1|3289941_3290700_-|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase
MLSVNLPLSENLPAHGARHVAIIMDGNGRWAKRQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRVIGDISRFNTRLQDRIHKAEALTSQNTGLTLNIAANYGGRWDIIQGVQQLAAQVQEGLLRPDQIDEEMLSKQICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTAPGGIDA

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Crispr_ID: NZ_CP013940_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_15

3367129-3367208

Orphan

Consensus_repeat	Method
TCTAGTTTTTTTATTGAGGATTCAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_15

>merge|NZ_CP013940|15|3367129-3367208|CRISPRCasFinder
TCTAGTTTTTTTATTGAGGATTCAATCTCATATCTTCTGTTTTCCCCCTGCTCTTCTAGTTTTTTTATTGCGGATTCAAT

>NZ_CP013940|15|15|3367129-3367208|CRISPRCasFinder
TCTAGTTTTTTTATTGAGGATTCAAT	CTCATATCTTCTGTTTTCCCCCTGCTCT
TCTAGTTTTTTTATTGCGGATTCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_007775004.1\|3361433_3361868_+\|prepilin-peptidase-dependent-pilin	unknown	unknown	gnl\|CDD\|236718
NZ_CP013940.1\|WP_007774992.1\|3367801_3368698_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376283
NZ_CP013940.1\|WP_007775010.1\|3358787_3359642_-\|beta-lactamase-regulator-AmpE	unknown	unknown	gnl\|CDD\|374997
NZ_CP013940.1\|WP_007775008.1\|3359638_3360202_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
NZ_CP013940.1\|WP_007774989.1\|3368768_3370391_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NZ_CP013940.1\|WP_007775006.1\|3360289_3361180_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|181612
NZ_CP013940.1\|WP_007774983.1\|3370888_3372088_+\|protein-transport-protein-HofC	unknown	unknown	gnl\|CDD\|182559
NZ_CP013940.1\|WP_023899424.1\|3375459_3378165_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP013940.1\|WP_032986538.1\|3363613_3363874_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_007774686.1\|3372127_3373171_-\|GMP-reductase	unknown	unknown	gnl\|CDD\|235343
NZ_CP013940.1\|WP_032967844.1\|3365680_3366304_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239736
NZ_CP013940.1\|WP_007774683.1\|3374056_3374800_+\|cell-division-protein-ZapD	unknown	unknown	gnl\|CDD\|235389
NZ_CP013940.1\|WP_032967846.1\|3363427_3363613_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_144083717.1\|3378222_3378798_-\|secA-regulator-SecM	unknown	unknown	gnl\|CDD\|235088
NZ_CP013940.1\|WP_032968615.1\|3373436_3374057_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP013940.1\|WP_007774681.1\|3374809_3375010_+\|DNA-gyrase-inhibitor-YacG	unknown	unknown	gnl\|CDD\|234754
NZ_CP013940.1\|WP_007774679.1\|3375006_3375399_-\|8-oxo-dGTP-diphosphatase-MutT	unknown	unknown	gnl\|CDD\|182721
NZ_CP013940.1\|WP_080630063.1\|3363873_3364320_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_032967847.1\|3363209_3363431_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_032983104.1\|3357814_3358768_+\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|226449

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_007775004.1\|3361433_3361868_+\|prepilin-peptidase-dependent-pilin	gnl\|CDD\|236718	PRK10574, PRK10574, putative major pilin subunit; Provisional.	6.10386e-92
NZ_CP013940.1\|WP_007774992.1\|3367801_3368698_-\|hypothetical-protein	gnl\|CDD\|376283	pfam18864, AbiTii, AbiTii. Alpha + beta domain. Found fused to the N-terminus of the c2405 family of HEPN domains and in few cases to Ymh.	4.29917e-44
NZ_CP013940.1\|WP_007775010.1\|3358787_3359642_-\|beta-lactamase-regulator-AmpE	gnl\|CDD\|374997	pfam17113, AmpE, Regulatory signalling modulator protein AmpE. AmpE is a family of bacterial regulatory proteins. AmpE in conjunction with AmpD sense the effect of beta-lactam on peptidoglycan synthesis and relay this signal to AmpR. AmpR regulates the production of beta-lactamase.	1.19988e-176
NZ_CP013940.1\|WP_007775008.1\|3359638_3360202_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	5.59148e-138
NZ_CP013940.1\|WP_007774989.1\|3368768_3370391_-\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	3.79206e-23
NZ_CP013940.1\|WP_007775006.1\|3360289_3361180_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|181612	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase.	0
NZ_CP013940.1\|WP_007774983.1\|3370888_3372088_+\|protein-transport-protein-HofC	gnl\|CDD\|182559	PRK10573, PRK10573, protein transport protein HofC.	0
NZ_CP013940.1\|WP_023899424.1\|3375459_3378165_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP013940.1\|WP_007774683.1\|3374056_3374800_+\|cell-division-protein-ZapD	gnl\|CDD\|235389	PRK05287, PRK05287, cell division protein ZapD.	1.767e-135
NZ_CP013940.1\|WP_007774686.1\|3372127_3373171_-\|GMP-reductase	gnl\|CDD\|235343	PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional.	0
NZ_CP013940.1\|WP_032967844.1\|3365680_3366304_-\|recombinase-family-protein	gnl\|CDD\|239736	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.	4.46417e-69
NZ_CP013940.1\|WP_144083717.1\|3378222_3378798_-\|secA-regulator-SecM	gnl\|CDD\|235088	PRK02943, PRK02943, secA regulator SecM.	5.84854e-82
NZ_CP013940.1\|WP_032968615.1\|3373436_3374057_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	6.67612e-100
NZ_CP013940.1\|WP_007774681.1\|3374809_3375010_+\|DNA-gyrase-inhibitor-YacG	gnl\|CDD\|234754	PRK00418, PRK00418, DNA gyrase inhibitor YacG.	6.33527e-34
NZ_CP013940.1\|WP_007774679.1\|3375006_3375399_-\|8-oxo-dGTP-diphosphatase-MutT	gnl\|CDD\|182721	PRK10776, PRK10776, 8-oxo-dGTP diphosphatase MutT.	9.38449e-88
NZ_CP013940.1\|WP_032983104.1\|3357814_3358768_+\|family-43-glycosylhydrolase	gnl\|CDD\|226449	COG3940, COG3940, Predicted beta-xylosidase [General function prediction only].	0

>NZ_CP013940.1|WP_032967844.1|3365680_3366304_-|recombinase-family-protein
MTSRVYAYLRASTTQQDATRAKGQLGEFATANGMTISSYFTENESGASLKRPELFRLLDIAQKGDVLLVEQVDRLSRLSGEDWNKLRSLINEKGVRVVALDLPTSHQLIQSGDEFTSRMLEALNGMMLDMLAAIARKDYTDRKRRQAQGIVKAKSDGKYKGRPEDTQRNERIAKLLQAGMSYSDVMETVNCSRATVAKVSKSLKEVV
>NZ_CP013940.1|WP_080630063.1|3363873_3364320_-|hypothetical-protein
MSKAESEYRDAVESRQQLINRKTAEYLANPSERHGFIVKQVYPTNQQQIIESMAYSGYMVHRMGIGVISFIRVPKNAKDNPLQDITDKATAEAESTIDKMIERLKVKASEAVHQRNKIVIEARKALDSIKLFESYLNVIVTDSEEVTE
>NZ_CP013940.1|WP_032986538.1|3363613_3363874_-|hypothetical-protein
MITPMKGLSKRGSYNPNTDSMEFKYFNGQKEISEATYKSLSSGSKPKPTVKPSKAVTTYKVKPKPTIEQQRDTALKDAIRKMTGGL
>NZ_CP013940.1|WP_032967846.1|3363427_3363613_-|hypothetical-protein
MNQLFNAYGQQVRANIALNLHSFYLGKLERLANRIGDGIKSEEQRLILAIGEMLRNVETEQ
>NZ_CP013940.1|WP_032967847.1|3363209_3363431_-|hypothetical-protein
MNLYAFNPLKQNDKQEVLTPVAFNLVLSLPEQLLKRLDKVGYELVKRYGIAGCSDKQRHHIVIVHLLEKHTFR
>NZ_CP013940.1|WP_007775004.1|3361433_3361868_+|prepilin-peptidase-dependent-pilin
MNRQSGFTLIELMVVIGIIAILSAIGVPAYQNYLRKAALTDMLQTVIPYRTAIELCVIDRGGLSSCDAGTNGIPAPKTTRYVSEMTVAQGVISATGQDSLNGLSVMLTPQWNSANGMEGWKRTCATSDTAMQQACEDVFRSSLP
>NZ_CP013940.1|WP_007775006.1|3360289_3361180_+|carboxylating-nicotinate-nucleotide-diphosphorylase
MPPRRYNPDHRRDALLERIALDIPFTVAQALREDLGGETDASRDITAQLLPPESRSHAVVITREAGVFCGKRWVDEVFIQLGGDVRVTWHVEDGDDVQPDQPLFELEGASRVLLTGERTALNFVQTLSGVATEVRRYVSLLEGTHTQLLDTRKTIPGLRSALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVESLEELDAALKAGADIIMLDNFTVVQMREAVKRTAGQARLEVSGNVTLETLREFAETGVDFISVGALTKHIRALDLSMRFR
>NZ_CP013940.1|WP_007775008.1|3359638_3360202_-|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MQVKDGWLVDARHAPSPHHDCRPEDEAPSLLVVHNISLPPGEFGGPWIDALFAGTLDSQAHPYFAGIAHLRVSAHCLIRRDGEIVQYVPFNKRAWHAGVSCYQGRERCNDFSIGIELEGTDVQPYTDAQYRQLAAVTRTLISLYPAMKNHMTGHSDIAPERKTDPGPAFDWTRFRALVADPSDKEMR
>NZ_CP013940.1|WP_007775010.1|3358787_3359642_-|beta-lactamase-regulator-AmpE
MTLFTLLLVLIAERLFKLGEHWQLDHRLEPLFRRVRHFSLFFTLGMAVLAMLVVFLCLNALEGWFFNVPLLIFWILIGVLCIGAGGVRRHYHAYLKAASHDDSHARENMAYELTLIHGVPPGCDEREYLRELQNGLLWINYRFYLAPMFWFVVGGMWGPVTLTGYAFLRAWQSWVARHHTPHQRLLSGIDAILHVLDWVPVRLAGVVYALVGHGEKALPAWFASLLDRYTSQYQVLTGLAQFALAREPHVDKVATPKAAVSMAKKATLVIVVVVALLTIYGTLM
>NZ_CP013940.1|WP_032983104.1|3357814_3358768_+|family-43-glycosylhydrolase
MNTSPWPNPLIEQRADPFILRHQGQYYFIASVPEYDRLEIRRAPSIESLRQAQPVVVWRKPESGPMSELIWAPELHHINNKWYIYFAAAPTRALKDNMFQHRMYVLECADSDPLTGTWTDKGQIQTPYDTFSLDATTFEHQGKLWYLWAQKAPDIPGNSNLYLCEMENPWTLKGEPVMLSKPELEWECRGFLVNEGPAVVKHGERLFVTYSASATDENYCMGLLWIDQAADLCDPRNWHKSPQPVFTTSYENRQYGPGHNSFTTTPDGQDVLVYHARNYTEIEGDPLWDPNRHTRVKLITWDDDGMPQFGTPLADHP
>NZ_CP013940.1|WP_007774992.1|3367801_3368698_-|hypothetical-protein
MNSPVLQLQALAEDPKTEILAVLLKAKSIAVKLNLLDLITWVEHEINGYPNKSDVPDYRTGHGIVKGFNYVQGRYLPLDLNGMTAEMIDKITTYTLYESISSMDNRDNKGEMIRLPLNPRQVEILLGAGKGGMELCWFFSSNKLEHIVTTVRNKILDWSLELEKQNIFGEDLRFNQQEKEVAPVTVKYIFNDVFTNNGVFAHQVEGDVNQQNNITSGDFSSLADYLEKLGVEKSDIRELEGIISDSPVPESSENLGAGIGGWVGNMIGKAYAGGLNIAGAAAPAILTNAICHFFNIPV
>NZ_CP013940.1|WP_007774989.1|3368768_3370391_-|recombinase-family-protein
MPKAISYIRFSSRIQASGDSTKRQNKYINEWLKNNPDYHLDESLRFQDLGISGYSGANAKSGAFGEFLAAVESGVIEAGSVLLVESLDRVSRQDIDTARERLRKILLAGVDVVTLADNSWYKKESLNDPLSLIKAVLIMQRANEESATKSKRLRSAWDAKREEAAKGKIMSRRCVAWLRVSDDMSHFELIPDNVKAVQRVFQLRLEGLPFVRIARQMNEEGFYTLNQRNPVKGAWSHTTVKALLDNRSVIGFKVPSNCTVTKGVKEIPNYYPAVISEEHFYAVQQLKQGAGRRPSSEKPLLTNLFKGVMRCAECGFVTIVNCATEKWHGVYRCSMRYEGRCHAKSINRRLADKALVQGLLYNTNRLSLNRDNGSAIGSLQSELEQLQKQRERLIKLAMLADDTESMAKDLKALNSQIKDAEKAISDVHQREQSTQLETISHLDLTVKKDRIEAQIIIKRIVKEIRLNTAGKKCDVFLHNGLKLLNFPLDRVVDGAQWLEVLPLIDGDEFDFEGFTTKPRYIALEEAPNWVKEMEEQSNQP
>NZ_CP013940.1|WP_007774983.1|3370888_3372088_+|protein-transport-protein-HofC
MDNLLWRWRGVNKEGASCEGMVWASDKISASLQLMDDEVHPLMLKRASVNKRYWSSEHKILAIRQLAALLQAGVSLTQGLTMLASQHPVTQWRALLGQLAKQLGRGIAFSETLRQWPKVFPPLYILLMRTGELTGKLDVCCQQLAQQQEDQQKLRKQVIKALRYPAFIFTVALLLTLGMTCFVLPQFTAIYRSFNTPLPLVTRAVIGLSEALIQHATWWLSVLVITPLVIVRLRRSSQWQLHEAAWLLKLPLFGPLIRGQQLSQIYTVLSLMQRAGIPLLQSLGSVEGTLASPLWRQAVGRVKESIAGGLPFWKALEQETVFTALCIQLVRTGEETGSLDLMLEKLAEWHLGQTSERAQTLAATLEPLMMMVIGLIVGTLVVAMYLPIFRLGDAMSGMN
>NZ_CP013940.1|WP_007774686.1|3372127_3373171_-|GMP-reductase
MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSRVQWSGVPIIAANMDTVGTFAMAQALAAFDILTAVHKHYSVQDWTGFIDSVSPDVLKHVMVSTGTSDADFAKTKEILALSASLQFICIDVANGYSEHFVQFVAKARAAWPDKAIIAGNVVTGEMCEELILAGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIISDGGCTVPGDVAKAFGGGADFVMLGGMLAGHDESGGTVVEQNGEKFMLFYGMSSESAMNRHVGGVAQYRAAEGKTVKLPLRGPVDDTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRVFNSL
>NZ_CP013940.1|WP_032968615.1|3373436_3374057_+|dephospho-CoA-kinase
MVYTVALTGGIGSGKSTVADAFARLGVTVVDADIIARQVVEPGTPGLNAIITRFGQAICAPDGTLNRRALREIIFSSPQEKAWLNGLLHPLIHQQTQSEIARAASAYVLWVVPLLIENQLHSKANRVLVVDVTPETQIQRTMQRDGVSREHAELILNAQATREARLAIADDVIDNNGSPETIAGDVARLHQRYLQLAAQAVPQENK
>NZ_CP013940.1|WP_007774683.1|3374056_3374800_+|cell-division-protein-ZapD
MQTHVLFEHPLNEKMRTWLRIEFLIQQMKALLPVSDHASALHFFRNVGDLLDVFERGDTRTELLKELERQQRKLQSWAEVPGVDNERIESLRRELKARSSMLMAAPRLGQTLREDRLIALVRQRLSIPGGCCSFDLPLLHVWLCSPQEERDVQVNSWLATLQPLTHTLDMILDLIRQSAPFRKQTSLNGFYQDNGDDADLLRLQLPLQEALYPQISGHKSRFAIRFMPLDSEHGRVPERFDFELACC
>NZ_CP013940.1|WP_007774681.1|3374809_3375010_+|DNA-gyrase-inhibitor-YacG
MSDATIVNCPTCGKEVIWGDNSPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDRSDTDGWSEEENLP
>NZ_CP013940.1|WP_007774679.1|3375006_3375399_-|8-oxo-dGTP-diphosphatase-MutT
MKKLQIAVGIVRNAKGEIFITQRAADAHMGNKWEFPGGKIEAGETPESALRRELQEETGITVTSATLFETLDYEFPDRHISLWFYLVESWEGEPWGKEGQPGHWVHQQALDAQAFPPANEPVIAKLRAQP
>NZ_CP013940.1|WP_023899424.1|3375459_3378165_-|preprotein-translocase-subunit-SecA
MLIKMLTKVFGSRNDRTLRRMRKVVALINGMEPALEKLSDEELKAKTAEFRARLEKGETLENLLPEAFAVVREASKRVFGMRHFDVQLLGGMVLNDRCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGMSVAVNMSGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEDRVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSELYKKVNKIIPHLVRQEKEDSDTFQGEGHFSVDEKARQVNLTERGLVLVEELLVKEGIMDEGESLYSPGNIMLMHHVTAALRAHVLFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVEIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIDAIIEDIKERTAKGQPVLVGTISIEKSEVISQALTKAGIEHNVLNAKFHAREADIVAQAGYPGAVTIATNMAGRGTDIMLGGSWQAEVAELEAPSEEQIAQIKADWQKRHDAVLASGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSMEDALMRIFASDRVANMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYTQRNELLDVADISETINSIREDVFKATIDAHIPPQSLEEMWDIPGLEERLKNDFDLELPIAQWLDKEPDLHEETLRERILESAKEVYARKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFAMFAAMLESLKYEVISTISKVQVRMPEEVEAMEQQRREEAERLVQMQQLSHQDDETAAAAALAEQTGDRKVGRNDPCPCGSGKKYKQCHGRLS
>NZ_CP013940.1|WP_144083717.1|3378222_3378798_-|secA-regulator-SecM
MVIFIPLLTDNITWAKAGVIWWVTVPGIFMRWRQFGRRYFWPHLLLGMVAASLGLPALNNNAEPAAPAEASTSHTGTLRSFDSLALISETSRRSAAFGVDYWQQHAIRTVIRHLSFAMAPQALPMAMEESLPLNAHHLALLDTLSAMLTQDLQPAAAQVQPAPRLLPHLSFTVSAWIRQVHGIRAGPRHLA

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Crispr_ID: NZ_CP013940_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013940_16

3600523-3600617

Orphan

Consensus_repeat	Method
ACGGTGGGTGCGCTTCGCTTACCCACCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013940_16

>merge|NZ_CP013940|16|3600523-3600617|CRISPRCasFinder
ACGGTGGGTGCGCTTCGCTTACCCACCCTACCAAACACCGTCAGGTATGCTGGCGATACGGTAAACGGTGGGTGCGCTTTGCTTACCCACCCTAC

>NZ_CP013940|16|16|3600523-3600617|CRISPRCasFinder
ACGGTGGGTGCGCTTCGCTTACCCACCCTAC	CAAACACCGTCAGGTATGCTGGCGATACGGTAA
ACGGTGGGTGCGCTTTGCTTACCCACCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013940.1\|WP_007780847.1\|3596017_3596485_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_007780838.1\|3598999_3600511_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP013940.1\|WP_007780625.1\|3609584_3610037_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP013940.1\|WP_007780835.1\|3601181_3604037_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP013940.1\|WP_007780855.1\|3591112_3592132_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP013940.1\|WP_007780862.1\|3588993_3589446_-\|lysozyme	unknown	unknown	gnl\|CDD\|381599
NZ_CP013940.1\|WP_014729699.1\|3600717_3601179_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP013940.1\|WP_032983607.1\|3610708_3611929_+\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NZ_CP013940.1\|WP_007780857.1\|3590198_3590861_-\|DUF2589-domain-containing-protein	unknown	unknown	gnl\|CDD\|371654
NZ_CP013940.1\|WP_007780850.1\|3594313_3595957_-\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|274097
NZ_CP013940.1\|WP_032981092.1\|3605552_3606056_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP013940.1\|WP_007798588.1\|3589438_3590149_-\|DUF2589-domain-containing-protein	unknown	unknown	gnl\|CDD\|371654
NZ_CP013940.1\|WP_007780628.1\|3608348_3609353_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP013940.1\|WP_007780852.1\|3592388_3594053_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274090
NZ_CP013940.1\|WP_038882602.1\|3597617_3598730_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP013940.1\|WP_007780638.1\|3606102_3606909_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013940.1\|WP_023899520.1\|3604155_3605358_-\|DUF898-family-protein	unknown	unknown	gnl\|CDD\|226719
NZ_CP013940.1\|WP_023899522.1\|3606953_3607718_-\|tRNA-(ms[2]io[6]A)-hydroxylase	unknown	unknown	gnl\|CDD\|114868
NZ_CP013940.1\|WP_023899517.1\|3596548_3597631_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP013940.1\|WP_007798551.1\|3607765_3608185_-\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876

Protein	Function_ID	Function_description	E-value
NZ_CP013940.1\|WP_007780838.1\|3598999_3600511_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP013940.1\|WP_007780625.1\|3609584_3610037_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.30801e-62
NZ_CP013940.1\|WP_007780835.1\|3601181_3604037_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP013940.1\|WP_007780855.1\|3591112_3592132_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	3.48798e-168
NZ_CP013940.1\|WP_007780862.1\|3588993_3589446_-\|lysozyme	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	7.46434e-76
NZ_CP013940.1\|WP_014729699.1\|3600717_3601179_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	1.26265e-64
NZ_CP013940.1\|WP_032983607.1\|3610708_3611929_+\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NZ_CP013940.1\|WP_007780857.1\|3590198_3590861_-\|DUF2589-domain-containing-protein	gnl\|CDD\|371654	pfam11655, DUF2589, Protein of unknown function (DUF2589). This family of proteins has no known function.	3.84775e-42
NZ_CP013940.1\|WP_007780850.1\|3594313_3595957_-\|DAK2-domain-containing-protein	gnl\|CDD\|274097	TIGR02361, Dihydroxyacetone_kinase_1, dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses ().	0
NZ_CP013940.1\|WP_032981092.1\|3605552_3606056_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.25242e-19
NZ_CP013940.1\|WP_007798588.1\|3589438_3590149_-\|DUF2589-domain-containing-protein	gnl\|CDD\|371654	pfam11655, DUF2589, Protein of unknown function (DUF2589). This family of proteins has no known function.	5.6284e-20
NZ_CP013940.1\|WP_007780628.1\|3608348_3609353_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP013940.1\|WP_007780852.1\|3592388_3594053_-\|hypothetical-protein	gnl\|CDD\|274090	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.	9.99585e-10
NZ_CP013940.1\|WP_038882602.1\|3597617_3598730_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP013940.1\|WP_023899520.1\|3604155_3605358_-\|DUF898-family-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	7.64217e-75
NZ_CP013940.1\|WP_023899522.1\|3606953_3607718_-\|tRNA-(ms[2]io[6]A)-hydroxylase	gnl\|CDD\|114868	pfam06175, MiaE, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE). This family consists of several bacterial tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.	4.2486e-98
NZ_CP013940.1\|WP_023899517.1\|3596548_3597631_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP013940.1\|WP_007798551.1\|3607765_3608185_-\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.95382e-66

>NZ_CP013940.1|WP_007780838.1|3598999_3600511_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNTYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIASGIKAAKDLGNMPPNICNAAYLASQARQLADSFSKNVVTRVIGEQQMKELGMHSYLAVGEGSQNESLMSVIEYKGSSEPDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELNLPVNVTGILAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFDPEVVIDVATLTGACVIALGHHITGLMSNHNPLAHELISASEQAGDRAWRLPLADEFQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLSQFLLNRAGFNGEE
>NZ_CP013940.1|WP_038882602.1|3597617_3598730_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPEMAQLILPLSLFLALLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLALLTGIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATDGNAVLFIESVDGSKFKDVFLAQLRPKGNARPSVVVADSGELSQRKDGSQVVTLNQGTRFEGTAMLRDFRITDFKDYKAIIGHQAVALDPDDAEQMDMKTLWQADSKSARAEFHWRLTLVFAVIVMALMVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGAKGKLDPLIWMWAVNLLYLALAVALNLWDTVPVRRIRTRFARRGVIDAGI
>NZ_CP013940.1|WP_023899517.1|3596548_3597631_-|LPS-export-ABC-transporter-permease-LptG
MLGFSVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLKKTGEGSYTALGAGTYTLLSVPKDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAASVMKTAIPLVIFTMAIGEWVAPQGEQMARNLRAQQMYGGSLLSTQQGMWAKDGDNFVYIERVKGENELGGISIYAFNDKRRLESVRYAASAKFDAEHKLWRLSQVDESNLKNPQQITGSQTLTGTWKTNLTPDKLGVVALDPDALSISGLRNYVKYLKASGQDASRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFIFYVLDQIFGPLSLVYGIPPIIGALLPSASFFLISLWLLMKRA
>NZ_CP013940.1|WP_007780847.1|3596017_3596485_-|hypothetical-protein
MKRLASLLLLFFAHLAFVPEALILILIVGAYFYFRDPLPWLVFEGAVFSVLALLFALLARHVDRRSLAVGVVIAGSPQEKEADEVLRLFSLGEHLLFAIASATLPYFILSFFIFDGRVAFWLHTAFLAAVLVGVHYAGRWLDRLQKRRGYGEYGL
>NZ_CP013940.1|WP_007780850.1|3594313_3595957_-|DAK2-domain-containing-protein
MSRFFFDDRKRLINDAVDGLLLTARHQNLTRLDIDPAIRIVAPRDWDKSKVAVISGGGSGHEPAHAGFVGKGMLTAAVCGDLFASPSVDAVLNAIVAVTGDRGCLLIVKNYTGDRLNFGLAAEKAKRHGLKVEMVIVSDDVALPDNKHPRGIAGTALVHKIAGFAAEQGKSLSDVRALAQQASDAVKSLGVALQTCSLPGSTEDGRIKQGEAELGLGIHGEPGASTISTQNSREIVATLVERLTPQVPADARLAVLINNLGGTSALEMALLTRELSRSALKDRIDWLIGPAPLVSALDMKGFSLSLLPLNDIFTEALNAPVETVGWLSPVAFGEPHAQSLPLVRDSVEAAPSDNPRVRTLLDRATASLIAQEAHLNALDAKVGDGDTGSTFAEGARDIAKKLANNQLPLNDAAALLQLIGERLATVMGGSSGVLMSIFFTAAGQKVAEGAALPDALLAGLAQMKHYGGAAPGDRTLIDALQPALEALRDKGLSAAAQAAEQGAKATAQMGKARAGRSSYVGSDNLEGVEDPGAVAVAGVFKAITQGE
>NZ_CP013940.1|WP_007780852.1|3592388_3594053_-|hypothetical-protein
MKDAWLAACDTTIQNFVRDSTRLEPGELSVVPVDYIDFYYQISLRLIFNVRTDTATQAGRVSAGLNTDVCHSRAEYERALQAQTSAILARDKTLDDARASLLSRPYGDWKSEEVVYLHPMQVCLTENCNNCHGSGSVNCGQCHGSGKTSCCSCGGSGQVLRHRSYYDHYSKQNRTESYYESCSSCYGGRVTCNGCGGSGNKQCSPCSGTGIISHITSLKATATPDYQLVYPQADVPEYIREGLYKAGVPSLGSYGPVALTYNDVDYARRDVHVLYDANVPFGRMESPLPEAGEEPIRWILYGVTPHILDAGHVLQALLKNDLDMLVRQATPGKRRNPRVGAASRRTVQTFMESEAHQAMLIEHSRGKRGDALREALNRAFATPYLNEAIESLGGLVSAVQRWSLAKWSVFTALMMYLLLPVVTTWQRQGMMNFDTGRIYLTVPGHINGVWNVEAGLRGIAMVHGIPMLCIALVGTLVGYLWRSHWLNRQFGKPLTAWGKQQGRLRSRWLLGAVLSMVIATALLLVAPVWISQDEMLYGVVPVHEVIQKVVALRQ
>NZ_CP013940.1|WP_007780855.1|3591112_3592132_+|NAD(P)-dependent-alcohol-dehydrogenase
MTIIKSYAAHEAGAELELYEYDAGELKPEDVEVEVEYCGICHSDLSMIDNEWGISAYPLIAGHEVIGRVSSLGSSAQNKGLKVGQRVGIGWTASSCEHCDACISGNQVNCQHGSVPTILNRGGFADKIRANWQWVIPMPEGIDAASAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLRAMGCEVTAFSSNPSKEQEILAMGADKVVNSRDPQALEALAGQFDLIINTVNVSLDWMPYFQALAWGGNFHTVGAVMKPFEVPAFSLIMGDRSVTGSATGSPHELRSLMKLAARAKVTPQTEEFPMSRINEALQHVRDGKARYRVVLKADF
>NZ_CP013940.1|WP_007780857.1|3590198_3590861_-|DUF2589-domain-containing-protein
MDSQFIGSVINALPLEHMIGGPLQAMIKAQVQASKAYADFLLSVCIKDGKAEAVQFDYDETVVDEKGVIQGVVKKTMRIPLLAAISHPNISIEEGTIDFELEVSQSESSNSETEAEASLEASVGWGPFSVKISGRVSHKAQQTRSTDTRAKYSIHTQVKRQPPPEALMRVIDFLTDAATRPAILPSEAKKLDDKTLDAYPVTPAAPANANAGGTGAANPR
>NZ_CP013940.1|WP_007798588.1|3589438_3590149_-|DUF2589-domain-containing-protein
MSLKDWIRGNREAGAGRSQTPLNAASTQGTAAVDPPDATAQDSAVAPEITPPDHVPPGPPPGGGTPPPSGPSPRGMPITLADITRGMQHAATSANQLIAHQYMQALDPFFEHSDDGRLVPKVIEMQLDDNHHFKLPLVALSTPRGLMLEKMKVFLTVRTDAVEQQSAAAGVSDDAVGRFHVSMSPQSRDKNGRDSDHVDIEMQFTVLEPPESVMRLIEEYTNQVLPKPTDRSNDNG
>NZ_CP013940.1|WP_007780862.1|3588993_3589446_-|lysozyme
MANIPTNTGVPGVELIKSFEGLRLDKYQDAIGKWTIGYGHLILPNENFPRPLTLQEAEDLLRADLGMTERGIRQMVKVDLNQNQFDALVSFAFNVGLGNLQSSTLLRLLNQGSYREAADQFLRWNKAGGNVLAGLTRRREAERLLFLTAL
>NZ_CP013940.1|WP_014729699.1|3600717_3601179_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDDTADGLSAVEQLVCDVAAARWRAGKRILIACVDEAQATRIDEALWKRDPDSFVPHNLAGEGPRGGAPVEIAWPQKRGSSPRELLISLLPEFAAFATAFYEVVDFVPYDESQKQLARERYKAYRAAGFHLTTATFTAPGTTQ
>NZ_CP013940.1|WP_007780835.1|3601181_3604037_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEQQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGRDAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVVLPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGRRHQLPMINILTFDGDIRESAEVYDTKGNESDVYSNEIPAQFQKMERFAARKAIVAAVDELGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDAEGNVYVGRSEEEVRQENNLSADVALRQDDDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFKTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGITLEELLEKRTGNMMQPQLAEKIRKRTEKQFPEGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEDQDCGFNGGEKVLSLADRWILAEFNQTVKAYREALDNFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGSEAELRGTRNTLVTVLEGLLRLAHPIIPFITETIWQRVKVIAGIDADTIMLQPFPAFDASRVDDAALADTEWLKQAIVAVRNIRAEMNIAPGKPLALLLRGCSQDAQRRVNDNRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLIDKDAELARLAKEVAKIEGEIGRIESKLGNEGFVARAPEAVIAKEREKLAGYHEAKAKLIEQQGVISAL
>NZ_CP013940.1|WP_023899520.1|3604155_3605358_-|DUF898-family-protein
MSDDNKFLAGNKTHAFSFQGSGGGYFPVWLVNILLTVFTAGLFLPWAMVRARRYFYENTELAGARFSYHATGGAIFVGWICLALLYVVFVINAVYENTFLTLCMVLLFIAFAPFLIMQGLRYQLLMTKLNGLRFSFKASPLRAWWVMLGCPLLIAILVTVVMGLVFTIAGSSQSMTGIFVGIALSVLVGLIGTALMQGIYAAQWYGLLVNNLQYGKHRFAINLNVKTCTFIYLKAMLLFVPFITVALIMLAPLMTQIMHYSVYGMNSQEEMLSFLISLIMSVLLPYFIYMVGILVCFSFAFVKMRNYAYQQMSLEGGITFRSTASVGSFVWIILSNFMVCGITFGLAWPWAKVRLTRYLLENTHVEGELDNLALVDHDEQPRNDPASVLGRGFSILPFAL
>NZ_CP013940.1|WP_032981092.1|3605552_3606056_+|GNAT-family-N-acetyltransferase
MNVEAPVDIIMRRMTAADNAAVARVIRQVSAEYGLTADKGYTVADPNLDVLYTQYSKPGHAYWVIELDGEVVGGGGIAPLACSETDICELQKMYFLPVARGRGLAKKLALQAMDFARSQGYRRCYLETTAFLKEAIALYERLGFAHISEPLGCTGHVDCEVRMLKTL
>NZ_CP013940.1|WP_007780638.1|3606102_3606909_-|hypothetical-protein
MNWNHVMLSALVGIVLAVVASALYKKGKVNKLAAVAIFVVGIVLWNIADIAWLRSANTSPEQGFDEVFNSMPLYKLIKEKDPAFYARLRGQALEMAKQGKTQQDIIDAMQANMAELEMQRIQFAPDEDVIAYMRVNMEQTREMQQHSDDACFRFLMPQVKGGVNPVQMLSKDVIAKRMDVETKLLSASYGQNAHKVTPQEQKMAEETLAPIGQSLAAKYGDTIEVFTDPQKGVGQEKQVCNMVQDLWHDVLALPPEKAGPVIRISMQQ
>NZ_CP013940.1|WP_023899522.1|3606953_3607718_-|tRNA-(ms[2]io[6]A)-hydroxylase
MNYDALLLPVKNFLHCATPQAWIDEARAPENLPLLLTDHMICELKAAQTAMLLIRRYVADKSGSDELLGWLQPYEDFTYREGPEPDFLALHKRIGKSVMPHTDDPWGQTLIDSMVLLIKEELHHFWQVREMMQARNIPYVKITASRYARGMRREMRTYEPATLVDKLICGAYIEARSCERFAALAPYLDDDLQKFYLSLLRSEARHYQDYLSLAQQISPENIAPRVQALGEAEARLINQPDTEFRFHSGIPVRA
>NZ_CP013940.1|WP_007798551.1|3607765_3608185_-|ribonuclease-E-inhibitor-RraB
MANPELLEEQREETRLIIEELLEDGSDPDALYTIEHHFSADDFDTLEKLAVEVFKLGYEVTDPEELELEEGGETVICCDALSECALNAELIDAQVEQLMNLAEKFNVEYDGWGTYFEDPDGEEDEDDEGMDEDDDGVRH
>NZ_CP013940.1|WP_007780628.1|3608348_3609353_+|ornithine-carbamoyltransferase
MSALYQKSFLKLLDFTPAQIRLLLELSAKLKSDKKNGVEVQKLAGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGFGQEIVETLAQYAGVPVWNGLTDEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALMGLDLRLVAPQSCWPAAELVAECQAMAKETGGRITLTEDIAAGVKGADFIYTDVWVSMGEAKEKWAERIALLRPYQVNSQMLALTGNPNVKFLHCLPAFHDDQTTLGKQMAQEYGLKGGMEVTDEVFESSHSIVFDQAENRMHTIKAVMVATLSE
>NZ_CP013940.1|WP_007780625.1|3609584_3610037_-|YhcH/YjgK/YiaL-family-protein
MIIGNIHALGEWLPAPFREAIEQVKQQITPQTAPGKYELDGNRLFFLLSQDMTEPLSDRRAEYHARYLDIQIVLAGREGMTFSTLPPGVPDTDWLADKDIAFLPEGAQEKTVVLEEGDFVIFWPGEVHKPLCAVGDPAPVRKVVVKMLMA
>NZ_CP013940.1|WP_032983607.1|3610708_3611929_+|arginine-deiminase
MEKHYVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFARTLRDQGVEVLLLTDLLTRTLDIPEAKDWLLETQVSEYRLGPSFAADVRGWLAGLPHRELARRLSGGLTFSEIPASIHNMVVDTHGANDFIMEPLPNHLFTRDTSCWIYNGVSINPMAKPARQRETNNLRAIYRWHPAFSDGEFIKYFGDQNINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGVEFLASALFKHQQATRVIAVELPKHRSCMHLDTVMTHIDIDTFSVYPEVVRPDVKCWTLTPDGRGGIARTEEKTLVYALEQALGIDQIRLITTGGDAFEAEREQWNDANNVLTVRPGVVIGYERNTWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLERDGI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013940_12	12.13\|2999704\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999704-2999735	32	NZ_CP023822	Escherichia coli strain 7/2 plasmid p7_2.2, complete sequence	29067-29098	0	1.0
NZ_CP013940_12	12.10\|2999521\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999521-2999552	32	HQ201308	Cronobacter phage ENT47670, complete genome	13118-13149	1	0.969
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	LN881736	Escherichia phage slur14, complete genome	95298-95325	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MT682713	Escherichia phage vB_EcoM_Ozark, complete genome	154458-154485	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MK373781	Escherichia phage vB_EcoM_KAW1E185, complete genome	151796-151823	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MT682714	Escherichia phage vB_EcoM_Lutter, complete genome	155794-155821	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MH553563	Enterobacteria phage RB18, complete genome	152959-152986	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MK962757	Shigella phage JK45, complete genome	158399-158426	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MG775043	Citrobacter phage vB_CroM_CrRp10, complete genome	130131-130158	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MK327933	Escherichia phage vB_EcoM_G2285, complete genome	154198-154225	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	KU867876	Escherichia phage vB_EcoM-UFV13, complete genome	151797-151824	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	KT184311	Enterobacteria phage GiZh, complete genome	36424-36451	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MK373786	Escherichia phage vB_EcoM_R5505, complete genome	153756-153783	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MK327943	Escherichia phage vB_EcoM_G53, complete genome	154956-154983	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MT176424	Citrobacter phage PhiZZ6, complete genome	152733-152760	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	KT184312	Enterobacteria phage Kha5h, complete genome	10973-11000	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MN895434	Escherichia phage teqhad, complete genome	159478-159505	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MN895435	Escherichia phage teqhal, complete genome	53384-53411	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MN850579	Escherichia phage mogra, complete genome	18531-18558	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	KT184309	Enterobacteria phage ATK47, complete genome	17254-17281	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MK047718	Escherichia phage p000y, complete genome	105976-106003	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	KT184310	Enterobacteria phage ATK48, complete genome	115488-115515	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	NC_042129	Escherichia phage slur03, complete genome	17015-17042	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MN895438	Escherichia phage teqdroes, complete genome	67887-67914	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MT446387	UNVERIFIED: Escherichia virus TH09, complete genome	3146-3173	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	NC_041990	Escherichia phage ST0, complete genome	75542-75569	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	KX130865	Shigella phage SHSML-52-1, complete genome	48926-48953	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	MN850590	Escherichia phage moha, complete genome	124961-124988	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	LN881733	Escherichia phage slur08, complete genome	14262-14289	6	0.786
NZ_CP013940_10	10.1\|1417391\|28\|NZ_CP013940\|CRISPRCasFinder	1417391-1417418	28	NC_024124	Escherichia phage vB_EcoM_JS09, complete genome	15094-15121	6	0.786
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	13604-13635	6	0.812
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	MN693306	Marine virus AFVG_25M45, complete genome	27286-27317	6	0.812
NZ_CP013940_12	12.10\|2999521\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999521-2999552	32	MN856087	Bacteriophage sp. isolate 245, complete genome	308-339	6	0.812
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	NC_008573	Shewanella sp. ANA-3 plasmid unnamed1, complete sequence	732-763	6	0.812
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	KT264794	Gokushovirus WZ-2015a isolate 46Fx8, complete genome	3811-3842	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	KP282675	Acidianus rod-shaped virus 2 strain ARV2, complete genome	28811-28842	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP011282	Enterococcus faecium strain E39 plasmid p1, complete sequence	144426-144457	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP025426	Enterococcus faecium strain SC4 plasmid p1, complete sequence	68874-68905	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	LT603679	Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 2	43362-43393	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP018832	Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence	235659-235690	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP040369	Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence	165303-165334	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP020485	Enterococcus faecium strain CFSAN059070 plasmid unnamed1, complete sequence	185767-185798	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP013995	Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence	198563-198594	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP027518	Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence	89672-89703	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP027498	Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence	41915-41946	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP027507	Enterococcus faecium strain AUSMDU00004055 plasmid unnamed1, complete sequence	124513-124544	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP027502	Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence	162434-162465	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_LR135288	Enterococcus faecium isolate E7199 plasmid 2	197530-197561	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	118467-118498	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_LR135279	Enterococcus faecium isolate E6975 plasmid 2	138103-138134	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP019209	Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence	111534-111565	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP019989	Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence	208860-208891	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP017798	Enterococcus faecium strain E243 plasmid unnamed1, complete sequence	163463-163494	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_LR135476	Enterococcus faecium isolate E8423 plasmid 2	91520-91551	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_LR135352	Enterococcus faecium isolate E8014 plasmid 2	89674-89705	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP017793	Enterococcus faecium strain E240 plasmid unnamed1, complete sequence	161779-161810	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP019993	Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence	216935-216966	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP035655	Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence	138710-138741	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP023790	Enterococcus faecium strain Efaecium_ER04462.3A plasmid pER04462.3A.1, complete sequence	191054-191085	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP023800	Enterococcus faecium strain Efaecium_ER04526.5A plasmid pER04526.5A.1, complete sequence	194526-194557	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP035661	Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence	132341-132372	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP035667	Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence	132227-132258	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP035649	Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence	138711-138742	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP040237	Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence	206001-206032	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP023809	Enterococcus faecium strain Efaecium_ER04526.3A plasmid pER04562.3A.1, complete sequence	194539-194570	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP023805	Enterococcus faecium strain Efaecium_ER04619.3A isolate isolate plasmid pER04619.3A.1, complete sequence	193193-193224	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP018827	Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence	235659-235690	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP012461	Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence	437-468	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP023795	Enterococcus faecium strain Efaecium_ER04484.3A plasmid pER04484.3A.1, complete sequence	194539-194570	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP023781	Enterococcus faecium strain Efaecium_ER03933.3A isolate isolate plasmid pER93933.3A.1, complete sequence	191862-191893	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	MN693456	Marine virus AFVG_25M411, complete genome	35874-35905	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	64140-64171	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	217942-217973	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NC_012654	Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence	173169-173200	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP031095	Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence	208983-209014	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP028104	Fusobacterium varium ATCC 27725 plasmid pFvar_27725, complete sequence	18541-18572	7	0.781
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	AP014128	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C44-MedDCM-OCT-S32-C97, * SEQUENCING IN PROGRESS *	19247-19278	7	0.781
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	NZ_CP017256	Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence	53068-53099	7	0.781
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	MN693005	Marine virus AFVG_117M50, complete genome	29804-29835	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP032327	Azospirillum brasilense strain MTCC4035 plasmid p6, complete sequence	52733-52764	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP007798	Azospirillum brasilense strain Az39 plasmid AbAZ39_p5, complete sequence	154686-154717	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	13525-13556	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	1264-1295	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	943834-943865	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	318139-318170	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	709862-709893	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP022365	Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence	40339-40370	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP029987	Sphingomonas sp. FARSPH plasmid p02, complete sequence	31681-31712	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	637102-637133	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP032344	Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence	82582-82613	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP033323	Azospirillum brasilense strain Cd plasmid p5, complete sequence	62069-62100	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP033317	Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence	6156-6187	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	173164-173195	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP012919	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence	100858-100889	7	0.781
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP009572	Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence	71360-71391	7	0.781
NZ_CP013940_12	12.1\|2998972\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2998972-2999003	32	NZ_CP013915	Serratia fonticola strain GS2 plasmid pSF002, complete sequence	62951-62982	8	0.75
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	L31578	Butyrivibrio fibrisolvens plasmid pRJF2, complete sequence	1714-1745	8	0.75
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_LR215005	Mycoplasma conjunctivae strain NCTC10147 plasmid 9	65035-65066	8	0.75
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NC_021623	Borrelia hermsii strain HS1 plasmid lp174, complete sequence	35604-35635	8	0.75
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP014350	Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence	36891-36922	8	0.75
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP031260	Klebsiella quasipneumoniae strain L22 plasmid pL22-3, complete sequence	46555-46586	8	0.75
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP011788	Candidatus Baumannia cicadellinicola strain B-GSS plasmid, complete sequence	1420-1451	8	0.75
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP011788	Candidatus Baumannia cicadellinicola strain B-GSS plasmid, complete sequence	2899-2930	8	0.75
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	MN856005	Myoviridae sp. isolate 302, complete genome	19710-19741	8	0.75
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	146062-146093	8	0.75
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	MN693145	Marine virus AFVG_25M56, complete genome	53722-53753	8	0.75
NZ_CP013940_12	12.8\|2999399\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999399-2999430	32	MT711975	Streptomyces phage Alderaan, complete genome	22529-22560	8	0.75
NZ_CP013940_12	12.13\|2999704\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999704-2999735	32	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	833755-833786	8	0.75
NZ_CP013940_13	13.2\|3026574\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026574-3026605	32	AJ972879	Yersinia phage phiR1-37 complete genome	109048-109079	8	0.75
NZ_CP013940_13	13.2\|3026574\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026574-3026605	32	NC_016163	Yersinia phage phiR1-37, complete genome	109048-109079	8	0.75
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	KJ183191	Podovirus Lau218 strain Abe, complete genome	3967-3998	8	0.75
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	KJ183193	Podovirus Lau218 strain TahiMoana, complete genome	4000-4031	8	0.75
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	KJ183192	Podovirus Lau218 strain KiloMoana, complete genome	4000-4031	8	0.75
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP029835	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence	206447-206478	8	0.75
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NC_013860	Azospirillum sp. B510 plasmid pAB510f, complete sequence	254226-254257	8	0.75
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	595-626	8	0.75
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP039644	Azospirillum sp. TSA2s plasmid p2, complete sequence	41587-41618	8	0.75
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP039640	Azospirillum sp. TSH100 plasmid p1, complete sequence	14932-14963	8	0.75
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	206515-206546	8	0.75
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP018096	Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence	89435-89466	8	0.75
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	487006-487037	8	0.75
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	1214658-1214689	8	0.75
NZ_CP013940_13	13.8\|3026940\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026940-3026971	32	MN693671	Marine virus AFVG_250M196, complete genome	27693-27724	8	0.75
NZ_CP013940_13	13.9\|3027001\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3027001-3027032	32	NZ_CP010957	Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence	146730-146761	8	0.75
NZ_CP013940_13	13.9\|3027001\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3027001-3027032	32	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	78830-78861	8	0.75
NZ_CP013940_12	12.1\|2998972\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2998972-2999003	32	NZ_CP010728	Phaeobacter inhibens strain P88 plasmid pP88_c, complete sequence	76000-76031	9	0.719
NZ_CP013940_12	12.2\|2999033\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999033-2999064	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	1202437-1202468	9	0.719
NZ_CP013940_12	12.2\|2999033\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999033-2999064	32	NZ_CP048426	Rhizobium daejeonense strain KACC 13094 plasmid unnamed3, complete sequence	196960-196991	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	GU943036	Uncultured phage MedDCM-OCT-S08-C495 genomic sequence	6286-6317	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP045196	Acinetobacter indicus strain TQ23 plasmid p23TQ-37k, complete sequence	24956-24987	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	CP008937	Candidatus Caedibacter acanthamoebae plasmid Plasmid_00001, complete sequence	46540-46571	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	CP008939	Candidatus Caedibacter acanthamoebae plasmid Plasmid_00003, complete sequence	169041-169072	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	839621-839652	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	516105-516136	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP015180	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB71, complete sequence	33792-33823	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP032614	Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence	205289-205320	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NC_020240	Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pAW63, complete sequence	33873-33904	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	MN694645	Marine virus AFVG_250M761, complete genome	9200-9231	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	228551-228582	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP016845	Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-1, complete sequence	40301-40332	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NC_018146	Zymomonas mobilis subsp. mobilis ATCC 29191 plasmid pZZ6.01, complete sequence	11317-11348	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	KP836355	Marinitoga camini virus 1, complete genome	4987-5018	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	MN694196	Marine virus AFVG_250M182, complete genome	24561-24592	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	MN693284	Marine virus AFVG_25M452, complete genome	20991-21022	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	MN693152	Marine virus AFVG_25M11, complete genome	9480-9511	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	21502-21533	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	120671-120702	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	MN693020	Marine virus AFVG_117M64, complete genome	9287-9318	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	AP014380	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S43-C70, * SEQUENCING IN PROGRESS *	19850-19881	9	0.719
NZ_CP013940_12	12.9\|2999460\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999460-2999491	32	MK448647	Streptococcus satellite phage Javan759, complete genome	4139-4170	9	0.719
NZ_CP013940_12	12.9\|2999460\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999460-2999491	32	MK448649	Streptococcus satellite phage Javan760, complete genome	13290-13321	9	0.719
NZ_CP013940_13	13.1\|3026513\|32\|NZ_CP013940\|CRISPRCasFinder,CRT	3026513-3026544	32	NZ_CP042264	Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence	12467-12498	9	0.719
NZ_CP013940_13	13.2\|3026574\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026574-3026605	32	NC_009516	Psychrobacter sp. PRwf-1 plasmid pRWF101, complete sequence	3906-3937	9	0.719
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	AP013456	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S23-C23	20775-20806	9	0.719
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP029359	Azospirillum sp. CFH 70021 plasmid unnamed4	159414-159445	9	0.719
NZ_CP013940_13	13.5\|3026757\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026757-3026788	32	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	502290-502321	9	0.719
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	AP014212	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C86-MedDCM-OCT-S32-C46, * SEQUENCING IN PROGRESS *	4839-4870	10	0.688
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	AP014213	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C86-MedDCM-OCT-S38-C287, * SEQUENCING IN PROGRESS *	118-149	10	0.688
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP020558	Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 plasmid pPLP3, complete sequence	22909-22940	10	0.688
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	NZ_CP023672	Clostridium septicum strain DSM 7534 plasmid unnamed1, complete sequence	494-525	10	0.688
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	AP013395	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C85-MedDCM-OCT-S43-C18	21107-21138	10	0.688
NZ_CP013940_12	12.3\|2999094\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999094-2999125	32	AP013647	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C72-MedDCM-OCT-S41-C96, * SEQUENCING IN PROGRESS *	26273-26304	10	0.688
NZ_CP013940_12	12.10\|2999521\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999521-2999552	32	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	553239-553270	10	0.688
NZ_CP013940_12	12.10\|2999521\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999521-2999552	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	510091-510122	10	0.688
NZ_CP013940_12	12.10\|2999521\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999521-2999552	32	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	624603-624634	10	0.688
NZ_CP013940_12	12.10\|2999521\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999521-2999552	32	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	487884-487915	10	0.688
NZ_CP013940_12	12.10\|2999521\|32\|NZ_CP013940\|PILER-CR,CRISPRCasFinder,CRT	2999521-2999552	32	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	981191-981222	10	0.688
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	163163-163194	10	0.688
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	NC_012654	Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence	80962-80993	10	0.688
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	NZ_CP031095	Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence	31166-31197	10	0.688
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	265313-265344	10	0.688
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	76406-76437	11	0.656
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	NC_011247	Borrelia duttonii Ly plasmid pl165, complete sequence	114297-114328	11	0.656
NZ_CP013940_13	13.3\|3026635\|32\|NZ_CP013940\|CRISPRCasFinder,CRT,PILER-CR	3026635-3026666	32	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	9498-9529	11	0.656

1. spacer 12.13|2999704|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023822 (Escherichia coli strain 7/2 plasmid p7_2.2, complete sequence) position: , mismatch: 0, identity: 1.0

tccttaatcaattgtaagttgatgaaaaaacg	CRISPR spacer
tccttaatcaattgtaagttgatgaaaaaacg	Protospacer
********************************

2. spacer 12.10|2999521|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 1, identity: 0.969

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
cgcagcgcgatcatgaacgttgcggcgattgg	Protospacer
*********** ********************

3. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to LN881736 (Escherichia phage slur14, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

4. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MT682713 (Escherichia phage vB_EcoM_Ozark, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

5. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MK373781 (Escherichia phage vB_EcoM_KAW1E185, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

6. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MT682714 (Escherichia phage vB_EcoM_Lutter, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

7. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MH553563 (Enterobacteria phage RB18, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

8. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MK962757 (Shigella phage JK45, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gacttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

9. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MG775043 (Citrobacter phage vB_CroM_CrRp10, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

10. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MK327933 (Escherichia phage vB_EcoM_G2285, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

11. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to KU867876 (Escherichia phage vB_EcoM-UFV13, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

12. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to KT184311 (Enterobacteria phage GiZh, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

13. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MK373786 (Escherichia phage vB_EcoM_R5505, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

14. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MK327943 (Escherichia phage vB_EcoM_G53, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

15. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MT176424 (Citrobacter phage PhiZZ6, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

16. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to KT184312 (Enterobacteria phage Kha5h, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

17. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MN895434 (Escherichia phage teqhad, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

18. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MN895435 (Escherichia phage teqhal, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

19. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MN850579 (Escherichia phage mogra, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gacttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

20. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to KT184309 (Enterobacteria phage ATK47, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

21. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MK047718 (Escherichia phage p000y, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gacttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

22. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to KT184310 (Enterobacteria phage ATK48, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

23. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to NC_042129 (Escherichia phage slur03, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

24. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MN895438 (Escherichia phage teqdroes, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

25. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MT446387 (UNVERIFIED: Escherichia virus TH09, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

26. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to NC_041990 (Escherichia phage ST0, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

27. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to KX130865 (Shigella phage SHSML-52-1, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

28. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to MN850590 (Escherichia phage moha, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gacttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

29. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to LN881733 (Escherichia phage slur08, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

30. spacer 10.1|1417391|28|NZ_CP013940|CRISPRCasFinder matches to NC_024124 (Escherichia phage vB_EcoM_JS09, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

31. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tctaaaatttaattcatcaattatttctttat	Protospacer
*  *. ***** **************.*****

32. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MN693306 (Marine virus AFVG_25M45, complete genome) position: , mismatch: 6, identity: 0.812

taaagcatttatttcatcaattatttttttat	CRISPR spacer
taaagcatttatttcatctagtattctatctt	Protospacer
****************** * ****.* *. *

33. spacer 12.10|2999521|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MN856087 (Bacteriophage sp. isolate 245, complete genome) position: , mismatch: 6, identity: 0.812

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
cagaatgcaataattaacgttgcggcgattgg	Protospacer
*. *..**.***** *****************

34. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NC_008573 (Shewanella sp. ANA-3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
cattcccaaagtttttagtttttattttttcg	Protospacer
..*. *********** *********** ***

35. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to KT264794 (Gokushovirus WZ-2015a isolate 46Fx8, complete genome) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tctttaatttttttcattaattatttttttat	Protospacer
*     **** ******.**************

36. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to KP282675 (Acidianus rod-shaped virus 2 strain ARV2, complete genome) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
agaaagatttggttcatcaattatttttttaa	Protospacer
 .**. ****. *******************

37. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011282 (Enterococcus faecium strain E39 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

38. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025426 (Enterococcus faecium strain SC4 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

39. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to LT603679 (Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 2) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

40. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018832 (Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

41. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040369 (Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

42. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020485 (Enterococcus faecium strain CFSAN059070 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

43. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013995 (Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

44. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027518 (Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

45. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027498 (Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

46. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027507 (Enterococcus faecium strain AUSMDU00004055 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

47. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027502 (Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

48. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135288 (Enterococcus faecium isolate E7199 plasmid 2) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

49. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025756 (Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

50. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135279 (Enterococcus faecium isolate E6975 plasmid 2) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

51. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019209 (Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

52. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019989 (Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

53. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017798 (Enterococcus faecium strain E243 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

54. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135476 (Enterococcus faecium isolate E8423 plasmid 2) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

55. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135352 (Enterococcus faecium isolate E8014 plasmid 2) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

56. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017793 (Enterococcus faecium strain E240 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

57. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019993 (Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

58. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035655 (Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

59. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023790 (Enterococcus faecium strain Efaecium_ER04462.3A plasmid pER04462.3A.1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

60. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023800 (Enterococcus faecium strain Efaecium_ER04526.5A plasmid pER04526.5A.1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

61. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035661 (Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

62. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035667 (Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

63. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035649 (Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

64. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040237 (Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

65. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023809 (Enterococcus faecium strain Efaecium_ER04526.3A plasmid pER04562.3A.1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

66. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023805 (Enterococcus faecium strain Efaecium_ER04619.3A isolate isolate plasmid pER04619.3A.1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

67. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018827 (Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

68. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012461 (Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

69. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023795 (Enterococcus faecium strain Efaecium_ER04484.3A plasmid pER04484.3A.1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

70. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023781 (Enterococcus faecium strain Efaecium_ER03933.3A isolate isolate plasmid pER93933.3A.1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

71. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MN693456 (Marine virus AFVG_25M411, complete genome) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tacccaaattatttcatctattgtttttttat	Protospacer
**    * ********** ***.*********

72. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttaagagaatatatcatctattatttttttat	Protospacer
* *** .  *** ***** *************

73. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttaagagaatatatcatctattatttttttat	Protospacer
* *** .  *** ***** *************

74. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttaagagaatatatcatctattatttttttat	Protospacer
* *** .  *** ***** *************

75. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttaagagaatatatcatctattatttttttat	Protospacer
* *** .  *** ***** *************

76. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028104 (Fusobacterium varium ATCC 27725 plasmid pFvar_27725, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tatattttctatatcatcaattattttttgat	Protospacer
** * . *.*** **************** **

77. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to AP014128 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C44-MedDCM-OCT-S32-C97, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
taatatttttattttatccattatttttttgt	Protospacer
*** .. *******.*** ***********.*

78. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 7, identity: 0.781

----tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
ctaatg----caaagttttgtatttttattttgtct	Protospacer
    **    ********* *.*************

79. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to MN693005 (Marine virus AFVG_117M50, complete genome) position: , mismatch: 7, identity: 0.781

tgtcgccaaa--gttttttgtttttattttgtcg	CRISPR spacer
--ccaacaaaaggttttttgtttttattttgtgt	Protospacer
  .*. ****  ********************

80. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032327 (Azospirillum brasilense strain MTCC4035 plasmid p6, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcgggca	Protospacer
 **** ******************   * **.

81. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007798 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p5, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggacg	Protospacer
 **** ******************   * .**

82. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatccgcacg	Protospacer
 **** ****************** . *..**

83. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatgcgggcg	Protospacer
 **** * ****************   * ***

84. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatgcgggcg	Protospacer
 **** * ****************   * ***

85. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatccgcgcg	Protospacer
 **** * **************** . *.***

86. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatgcgcgcg	Protospacer
 **** * ****************   *.***

87. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022365 (Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg----	CRISPR spacer
tgcgcggcccgtaggtgttgaaga----tgcgcatc	Protospacer
 **** * ****************    ****

88. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029987 (Sphingomonas sp. FARSPH plasmid p02, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccataggtgttgaagatccgcgcg	Protospacer
 **** ****.************* . *.***

89. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaagtgttgaagatgcgcgcg	Protospacer
 **** *******.**********   *.***

90. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032344 (Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg----	CRISPR spacer
tgcgcggcccgtaggtgttgaaga----tgcgcatc	Protospacer
 **** * ****************    ****

91. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033323 (Azospirillum brasilense strain Cd plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg----	CRISPR spacer
tgcgcggcccgtaggtgttgaaga----tgcgcatc	Protospacer
 **** * ****************    ****

92. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033317 (Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg----	CRISPR spacer
tgcgcggcccgtaggtgttgaaga----tgcgcatc	Protospacer
 **** * ****************    ****

93. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatgcgcgcg	Protospacer
 **** * ****************   *.***

94. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012919 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg----	CRISPR spacer
tgcgcggcccgtaggtgttgaaga----tgcgcatc	Protospacer
 **** * ****************    ****

95. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009572 (Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatccgcgcg	Protospacer
 **** * **************** . *.***

96. spacer 12.1|2998972|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013915 (Serratia fonticola strain GS2 plasmid pSF002, complete sequence) position: , mismatch: 8, identity: 0.75

ctgccacgcgtctgccgcagcgtattcggcgt	CRISPR spacer
tcgccatgcgtctgccgcagcgtattgtcact	Protospacer
..****.*******************     *

97. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to L31578 (Butyrivibrio fibrisolvens plasmid pRJF2, complete sequence) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttgttgttttaattcatcaattgtttttttat	Protospacer
* .    **** **********.*********

98. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215005 (Mycoplasma conjunctivae strain NCTC10147 plasmid 9) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
aattgaatttatttcatcatttattttcttca	Protospacer
 *  * ************* *******.**

99. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NC_021623 (Borrelia hermsii strain HS1 plasmid lp174, complete sequence) position: , mismatch: 8, identity: 0.75

----taaagcatttatttcatcaattatttttttat	CRISPR spacer
atgtta----ttttatttcatctagtatttttttaa	Protospacer
    **     *********** * **********

100. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014350 (Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

----taaagcatttatttcatcaattatttttttat	CRISPR spacer
atgtta----ttttatttcatctagtatttttttaa	Protospacer
    **     *********** * **********

101. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031260 (Klebsiella quasipneumoniae strain L22 plasmid pL22-3, complete sequence) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tatgtcttttatttcatcatgtatttttttga	Protospacer
** . * ************  *********.

102. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011788 (Candidatus Baumannia cicadellinicola strain B-GSS plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ataaaaatttatttcaacaaatattttttaaa	Protospacer
  **. ********** *** ******** *

103. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011788 (Candidatus Baumannia cicadellinicola strain B-GSS plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ataaaaatttatttcaacaaatattttttaaa	Protospacer
  **. ********** *** ******** *

104. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MN856005 (Myoviridae sp. isolate 302, complete genome) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
taaagaatttatttcatcagttactgattctg	Protospacer
***** *************.***.*  **.

105. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
aataaccgttatttcatcatttattattttaa	Protospacer
 * *.*  *********** ***** *****

106. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MN693145 (Marine virus AFVG_25M56, complete genome) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ccactcttttattttatcaattacttttttgt	Protospacer
. *  * *******.********.******.*

107. spacer 12.8|2999399|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MT711975 (Streptomyces phage Alderaan, complete genome) position: , mismatch: 8, identity: 0.75

ctgattttcggcatcccgtcgtacgcggtctg	CRISPR spacer
gccaccttcgccatcccgtcgtacgcgttcgg	Protospacer
 . *..**** **************** ** *

108. spacer 12.13|2999704|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tccttaatcaattgtaagttgatgaaaaaacg	CRISPR spacer
cacttaatcaattgttagttgatgaactccct	Protospacer
. ************* **********    *

109. spacer 13.2|3026574|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to AJ972879 (Yersinia phage phiR1-37 complete genome) position: , mismatch: 8, identity: 0.75

taaatcccccatttatcaggaaatagatagtt	CRISPR spacer
caaataccccatttatcaagaaatacactagt	Protospacer
.**** ************.****** *. . *

110. spacer 13.2|3026574|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NC_016163 (Yersinia phage phiR1-37, complete genome) position: , mismatch: 8, identity: 0.75

taaatcccccatttatcaggaaatagatagtt	CRISPR spacer
caaataccccatttatcaagaaatacactagt	Protospacer
.**** ************.****** *. . *

111. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to KJ183191 (Podovirus Lau218 strain Abe, complete genome) position: , mismatch: 8, identity: 0.75

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
taccgccaaatttttttgttgttattgttttc	Protospacer
*..******* ********* ***** * *.

112. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to KJ183193 (Podovirus Lau218 strain TahiMoana, complete genome) position: , mismatch: 8, identity: 0.75

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
taccgccaaatttttttgttgttattgttttc	Protospacer
*..******* ********* ***** * *.

113. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to KJ183192 (Podovirus Lau218 strain KiloMoana, complete genome) position: , mismatch: 8, identity: 0.75

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
taccgccaaatttttttgttgttattgttttc	Protospacer
*..******* ********* ***** * *.

114. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggatg	Protospacer
 **** ******************   * ..*

115. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NC_013860 (Azospirillum sp. B510 plasmid pAB510f, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggatg	Protospacer
 **** ******************   * ..*

116. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggatg	Protospacer
 **** ******************   * ..*

117. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039644 (Azospirillum sp. TSA2s plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggatg	Protospacer
 **** ******************   * ..*

118. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039640 (Azospirillum sp. TSH100 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggatg	Protospacer
 **** ******************   * ..*

119. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggatg	Protospacer
 **** ******************   * ..*

120. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
ggcgcgggccgaaggtgttgaaggggcgcagg	Protospacer
***** ***** ***********.*  *.. *

121. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatgcgcccg	Protospacer
 **** * ****************   *. **

122. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaagtgttgaagatgcggacg	Protospacer
 **** *******.**********   * .**

123. spacer 13.8|3026940|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to MN693671 (Marine virus AFVG_250M196, complete genome) position: , mismatch: 8, identity: 0.75

-tagcgcgctgatattgagcctcagcctccctg	CRISPR spacer
ataat-cgctgatattgaccatcagcctcacca	Protospacer
 **.. ************ * ******** *..

124. spacer 13.9|3027001|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010957 (Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence) position: , mismatch: 8, identity: 0.75

atatcgtccccgcatgccatccgtgc---aattta	CRISPR spacer
ggttcgtccacgaatgccatccgtgccgaaat---	Protospacer
.  ****** ** *************   ***

125. spacer 13.9|3027001|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 8, identity: 0.75

-atatcgtccccgcatgccatccgtgcaattta	CRISPR spacer
caca-cgtccgcgcaagccatccgtgcagggga	Protospacer
 *.* ***** **** ************.   *

126. spacer 12.1|2998972|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010728 (Phaeobacter inhibens strain P88 plasmid pP88_c, complete sequence) position: , mismatch: 9, identity: 0.719

ctgccacgcgtctgccgcagcgtattcggcgt	CRISPR spacer
gaactcggcgtctgccgcagcctcttcggcga	Protospacer
  .*.  ************** * *******

127. spacer 12.2|2999033|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

gcctatttcgggtgaaaaaccgagatagactt	CRISPR spacer
ttcgcgttcgggcgaataaccgagatagaaat	Protospacer
 .*   ******.*** ************  *

128. spacer 12.2|2999033|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048426 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

gcctatttcgggtgaaaaaccgagatagactt	CRISPR spacer
ttcccgttcgggtgaaaaaccgaggaagaaat	Protospacer
 .*.  ******************. ***  *

129. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to GU943036 (Uncultured phage MedDCM-OCT-S08-C495 genomic sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atgtttttttatttcatcaattaattttttag	Protospacer
  .  . **************** *******

130. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045196 (Acinetobacter indicus strain TQ23 plasmid p23TQ-37k, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ggggatttttatttcatcaattttttttctat	Protospacer
 ..... *************** *****.***

131. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to CP008937 (Candidatus Caedibacter acanthamoebae plasmid Plasmid_00001, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
agccgattttctttcatcaattatttttttca	Protospacer
 .  *  *** *******************

132. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to CP008939 (Candidatus Caedibacter acanthamoebae plasmid Plasmid_00003, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
agccgattttctttcatcaattatttttttca	Protospacer
 .  *  *** *******************

133. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tagttttaatatttcatctcttatttttttat	Protospacer
**.  .   *********  ************

134. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atttttatttatttcctcaattatatttttct	Protospacer
     .********* ******** ***** *

135. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015180 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB71, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
agtattatttttttcattaattatttttttca	Protospacer
 . * .**** ******.************

136. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atttttatttatttcctcaattatatttttct	Protospacer
     .********* ******** ***** *

137. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NC_020240 (Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pAW63, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
agtattatttttttcattaattatttttttca	Protospacer
 . * .**** ******.************

138. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atattcatttattttatccattattttttacc	Protospacer
  *  *********.*** **********  .

139. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 9, identity: 0.719

taaagcattt---atttcatcaattatttttttat	CRISPR spacer
---attgtttttaatttcatcaattatttctttcg	Protospacer
   * ..***   ****************.***

140. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016845 (Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-1, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttca--------tcaattatttttttat	CRISPR spacer
--------ttacttcagtaattcttcaattatttttttat	Protospacer
        ***.****        ****************

141. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NC_018146 (Zymomonas mobilis subsp. mobilis ATCC 29191 plasmid pZZ6.01, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
aggattttttattttatcaattattttattgt	Protospacer
 ..* . *******.************ **.*

142. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to KP836355 (Marinitoga camini virus 1, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttttaaatttatttcatcatgtattttttctt	Protospacer
*   . *************  ********. *

143. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MN694196 (Marine virus AFVG_250M182, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atattcatttgtttcattaattatttttacag	Protospacer
  *  *****.******.********** .*

144. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MN693284 (Marine virus AFVG_25M452, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tgcttcgtttattgtatcaattattttttttc	Protospacer
*.   *.****** .*************** .

145. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MN693152 (Marine virus AFVG_25M11, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tttattttttattttatcaatcattttttttc	Protospacer
*  * . *******.******.******** .

146. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atattcttttattttatcaatcatttttttca	Protospacer
  *  * *******.******.********

147. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atattcttttattttatcaatcatttttttca	Protospacer
  *  * *******.******.********

148. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MN693020 (Marine virus AFVG_117M64, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tttattttttattttatcaatcattttttttc	Protospacer
*  * . *******.******.******** .

149. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to AP014380 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S43-C70, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttttgtttttattttatcaatcattttttttc	Protospacer
*   *. *******.******.******** .

150. spacer 12.9|2999460|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MK448647 (Streptococcus satellite phage Javan759, complete genome) position: , mismatch: 9, identity: 0.719

gcttccaggaacaagagagaaattatccagcg	CRISPR spacer
acatccagaagcaagagagaaattattttggc	Protospacer
.* *****.*.***************.. *

151. spacer 12.9|2999460|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to MK448649 (Streptococcus satellite phage Javan760, complete genome) position: , mismatch: 9, identity: 0.719

gcttccaggaacaagagagaaattatccagcg	CRISPR spacer
acatccagaagcaagagagaaattattttggc	Protospacer
.* *****.*.***************.. *

152. spacer 13.1|3026513|32|NZ_CP013940|CRISPRCasFinder,CRT matches to NZ_CP042264 (Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

tggtggccaggaaaagcctacgacgacgtgtt	CRISPR spacer
cgacggccaggaaaagcttatgacgacgctaa	Protospacer
.*..*************.**.*******.

153. spacer 13.2|3026574|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NC_009516 (Psychrobacter sp. PRwf-1 plasmid pRWF101, complete sequence) position: , mismatch: 9, identity: 0.719

taaatcccccatttatcaggaaatagatagtt--	CRISPR spacer
gaaatcctccatttatcgggaaat--ccaatcaa	Protospacer
 ******.*********.******   .*.*.

154. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to AP013456 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S23-C23) position: , mismatch: 9, identity: 0.719

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
ggagccgaaatttttttgttcttattttgttc	Protospacer
 *   * *** *********.*********.

155. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029359 (Azospirillum sp. CFH 70021 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggtccgtaggtgttgaagatgcggatg	Protospacer
 **** * ****************   * ..*

156. spacer 13.5|3026757|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatgcgcacc	Protospacer
 **** * ****************   *..*

157. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to AP014212 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C86-MedDCM-OCT-S32-C46, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atgtttttttatttcatcaattaattttttta	Protospacer
  .  . **************** ******

158. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to AP014213 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C86-MedDCM-OCT-S38-C287, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atgtttttttatttcatcaattaattttttta	Protospacer
  .  . **************** ******

159. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020558 (Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 plasmid pPLP3, complete sequence) position: , mismatch: 10, identity: 0.688

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ctttgcaattgtttcatcaattattttcattg	Protospacer
.   *** **.****************. *

160. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023672 (Clostridium septicum strain DSM 7534 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

taaagcatttatttcatcaattatttttttat	CRISPR spacer
gtacttctttatttcatctattatatttttta	Protospacer
  *  . *********** ***** *****

161. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to AP013395 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C85-MedDCM-OCT-S43-C18) position: , mismatch: 10, identity: 0.688

taaagcatttatttcatcaattatttttttat	CRISPR spacer
taaagcatctatttcatcaagtaactgagcta	Protospacer
********.*********** ** .*   .

162. spacer 12.3|2999094|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to AP013647 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C72-MedDCM-OCT-S41-C96, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atttacttttatttcttcaattatatttttta	Protospacer
    .* ******** ******** *****

163. spacer 12.10|2999521|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 10, identity: 0.688

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
acgagcgcgataatgaaaggtgcggccgcgcg	Protospacer
   ************** * ****** ..  *

164. spacer 12.10|2999521|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 10, identity: 0.688

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
acgagcgcgataatgaaaggtgcggccgcgcg	Protospacer
   ************** * ****** ..  *

165. spacer 12.10|2999521|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 10, identity: 0.688

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
acgagcgcgataatgaaaggtgcggccgcgcg	Protospacer
   ************** * ****** ..  *

166. spacer 12.10|2999521|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
acgagcgcgataatgaaaggtgcggccgcgcg	Protospacer
   ************** * ****** ..  *

167. spacer 12.10|2999521|32|NZ_CP013940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
acgagcgcgataatgaaaggtgcggccgcgcg	Protospacer
   ************** * ****** ..  *

168. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 10, identity: 0.688

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
gttattcaaatttttttgttgttattttgcaa	Protospacer
  *  .**** ********* ********. .

169. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 10, identity: 0.688

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
gttattcaaatttttttgttgttattttgcaa	Protospacer
  *  .**** ********* ********. .

170. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 10, identity: 0.688

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
gttattcaaatttttttgttgttattttgcaa	Protospacer
  *  .**** ********* ********. .

171. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
aaactgaaaagttttttgattttagtttgtac	Protospacer
 . *   *********** ***** *****

172. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 11, identity: 0.656

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
caatatggaaattttctgtttttattttgtct	Protospacer
.. ... .**.****.***************

173. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NC_011247 (Borrelia duttonii Ly plasmid pl165, complete sequence) position: , mismatch: 11, identity: 0.656

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
caatatataaattttctgtttttattttgtct	Protospacer
.. ...  **.****.***************

174. spacer 13.3|3026635|32|NZ_CP013940|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 11, identity: 0.656

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
ataatccaaagttttctggttttattttcaaa	Protospacer
     **********.** *********   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1086391 : 1128438

Enterobacteria_phage(26.53%)

lysis,protease,integrase,portal,capsid,terminase

attL 1086303:1086318|attR 1127336:1127351

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1086303:1086318	attL	NA	NA	NA	NA
WP_007776948.1\|1086391_1086589_-	AlpA family phage regulatory protein	K7P7V0	Enterobacteria_phage	1.9e-22	77.8
WP_032968335.1\|1086620_1086968_-	hypothetical protein	F1C5B4	Cronobacter_phage	8.8e-55	92.2
WP_032968333.1\|1087311_1088118_-	DUF551 domain-containing protein	A0A2H4FRZ0	Salmonella_phage	3.3e-12	71.7
WP_007776945.1\|1088173_1088701_-	hypothetical protein	F1C5B6	Cronobacter_phage	2.7e-47	65.1
WP_007893381.1\|1088697_1088859_-	DUF2737 family protein	A0A0K2FIU6	Enterobacter_phage	2.7e-06	56.9
WP_144432651.1\|1088869_1089175_-	hypothetical protein	NA	NA	NA	NA
WP_007776942.1\|1089217_1089802_-	hypothetical protein	G9L666	Escherichia_phage	1.3e-79	78.5
WP_007776939.1\|1089798_1090479_-	AAA family ATPase	K7PMI2	Enterobacteria_phage	2.4e-112	85.8
WP_038882282.1\|1090478_1090622_-	hypothetical protein	A0A1R3Y5R4	Salmonella_virus	2.2e-12	76.6
WP_007841606.1\|1090611_1090800_-	DUF5444 family protein	A0A075B8F9	Enterobacteria_phage	6.9e-22	74.2
WP_071603002.1\|1090780_1090933_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	B8K1E2	Salmonella_phage	1.1e-14	67.3
WP_007706462.1\|1091027_1091177_-	hypothetical protein	NA	NA	NA	NA
WP_071603003.1\|1091333_1091618_+	type V toxin-antitoxin system endoribonuclease antitoxin GhoS	NA	NA	NA	NA
WP_032967804.1\|1091594_1091837_-	hypothetical protein	NA	NA	NA	NA
WP_032967803.1\|1091881_1092505_-	hypothetical protein	K7PKU5	Enterobacteria_phage	5.2e-90	81.2
WP_032967801.1\|1093942_1094644_-	helix-turn-helix transcriptional regulator	K7PK07	Enterobacteria_phage	7.9e-111	83.3
WP_032967800.1\|1094755_1094992_+	antirepressor protein Cro	K7PHA1	Enterobacteria_phage	1.9e-29	83.6
WP_038882287.1\|1095120_1095399_+	hypothetical protein	A0A220NRS4	Escherichia_phage	2.4e-31	73.9
WP_165688899.1\|1095439_1095583_+	hypothetical protein	NA	NA	NA	NA
WP_032967799.1\|1095579_1096428_+	replication protein	C6ZR51	Salmonella_phage	1.4e-114	74.5
WP_038882290.1\|1096538_1098419_+	AAA family ATPase	B9UDH8	Salmonella_phage	0.0e+00	90.7
WP_038882295.1\|1099666_1100017_+	hypothetical protein	F1C5C6	Cronobacter_phage	1.5e-57	94.0
WP_038882291.1\|1100352_1100643_+	hypothetical protein	NA	NA	NA	NA
WP_059223195.1\|1100836_1101277_+	recombination protein NinB	F1C5C7	Cronobacter_phage	3.2e-70	91.8
WP_032967878.1\|1101273_1101453_+	NinE family protein	A0A220NRK6	Escherichia_phage	7.3e-13	63.8
WP_032967879.1\|1101445_1101781_+	DUF2591 family protein	G8C7S4	Escherichia_phage	1.2e-45	79.0
WP_071603077.1\|1101773_1101956_+	NinF family protein	A0A0M4S6T3	Salmonella_phage	9.1e-19	66.7
WP_032967881.1\|1102211_1102607_+	RusA family crossover junction endodeoxyribonuclease	F1C5C9	Cronobacter_phage	5.0e-70	97.7
WP_032967882.1\|1102603_1102795_+	hypothetical protein	A0A1R3Y5V4	Salmonella_virus	5.2e-09	57.1
WP_007779152.1\|1102791_1102971_+	hypothetical protein	NA	NA	NA	NA
WP_080629873.1\|1102967_1103309_+	hypothetical protein	A0A1P8DTU9	Salmonella_phage	3.2e-49	77.4
WP_032967883.1\|1103305_1104085_+	antitermination protein	Q76H66	Enterobacteria_phage	5.9e-107	80.5
WP_032986368.1\|1104616_1104862_+\|lysis	lysis protein	A0A2H4JCI1	uncultured_Caudovirales_phage	1.4e-27	85.7
WP_165756546.1\|1104870_1105368_+	glycoside hydrolase family protein	A0A2H4JCH1	uncultured_Caudovirales_phage	5.7e-71	73.3
WP_032967885.1\|1105357_1105723_+	hypothetical protein	R9TPM9	Aeromonas_phage	1.7e-11	42.0
WP_071603005.1\|1105898_1106270_+	hypothetical protein	C6ZR72	Salmonella_phage	9.8e-44	70.3
WP_007779445.1\|1106275_1106518_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.3e-09	48.6
WP_032967797.1\|1107180_1107672_+\|terminase	terminase	A0A190XCG3	Acinetobacter_phage	8.7e-32	50.4
WP_007770945.1\|1107671_1109132_+	hypothetical protein	W6MW26	Pseudomonas_phage	1.8e-218	76.0
WP_038882300.1\|1109131_1111306_+\|portal	portal protein	A0A2D1GLJ6	Escherichia_phage	0.0e+00	78.6
WP_038882301.1\|1111319_1112231_+	scaffolding protein	A0A0M3ULI9	Salmonella_phage	5.4e-136	84.8
WP_007773761.1\|1112230_1113535_+\|capsid	phage capsid protein	G5DA99	Enterobacteria_phage	9.4e-174	71.3
WP_032967824.1\|1113575_1113773_+	hypothetical protein	E7C9T9	Salmonella_phage	7.8e-08	42.6
WP_038882302.1\|1113756_1114272_+	recombinase RmuC	E7C9U0	Salmonella_phage	8.8e-51	64.3
WP_038882303.1\|1114231_1115653_+	Packaged DNA stabilization protein gp10	Q76H18	Enterobacteria_phage	4.3e-196	68.5
WP_038882304.1\|1115652_1116321_+	hypothetical protein	C6ZR14	Salmonella_phage	3.3e-42	72.3
WP_032969231.1\|1116320_1116776_+	DUF2824 family protein	G5DA79	Enterobacteria_phage	2.7e-75	89.2
WP_038882305.1\|1116784_1117465_+	hypothetical protein	G5DA80	Enterobacteria_phage	3.4e-66	79.9
WP_038882306.1\|1117474_1118914_+	phage DNA ejection protein	A0A192Y834	Salmonella_phage	2.6e-116	53.4
WP_038882308.1\|1118913_1120899_+	hypothetical protein	Q76H13	Enterobacteria_phage	4.2e-266	73.5
WP_050570126.1\|1121051_1123163_+	hypothetical protein	I6S5Y0	Salmonella_phage	8.6e-52	58.5
WP_038882310.1\|1123175_1124615_-	hypothetical protein	F1C5A9	Cronobacter_phage	3.5e-28	25.3
WP_007779916.1\|1124616_1125537_-	glycosyltransferase family 2 protein	F1C5B0	Cronobacter_phage	4.9e-161	93.0
WP_032967911.1\|1125533_1125896_-	GtrA family protein	F1C5B1	Cronobacter_phage	3.1e-58	98.3
WP_007779919.1\|1126016_1127174_-\|integrase	tyrosine-type recombinase/integrase	E5AGD0	Erwinia_phage	4.1e-165	73.3
WP_032983646.1\|1127487_1128438_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.8e-129	80.1
1127336:1127351	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1452337 : 1461323

Burkholderia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007794693.1\|1452337_1452577_-	DinI family protein	K7PKM2	Enterobacterial_phage	5.5e-32	84.8
WP_007776171.1\|1452731_1453856_-	porin OmpC	Q1MVN1	Enterobacteria_phage	3.2e-106	55.9
WP_007776167.1\|1454498_1455197_+	phosphohydrolase	S4W232	Pandoravirus	3.6e-07	25.5
WP_007776166.1\|1455257_1456691_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	5.2e-101	53.3
WP_032968279.1\|1456674_1457172_+	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	4.0e-32	48.0
WP_007776162.1\|1457175_1458087_-	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_023898472.1\|1458265_1459180_+	DUF808 domain-containing protein	NA	NA	NA	NA
WP_004388133.1\|1459269_1459452_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_023898473.1\|1459652_1461323_+	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	7.9e-24	38.6

DBSCAN-SWA_3

1475447 : 1492114

Cronobacter_phage(33.33%)

head,holin,lysis,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007774940.1\|1475447_1476737_-	DUF3596 domain-containing protein	Q20GI2	Phage_258-320	1.5e-171	66.4
WP_071603019.1\|1476771_1477023_-	excisionase family protein	S4TND0	Salmonella_phage	6.2e-26	68.5
WP_015386538.1\|1477166_1477334_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_032983760.1\|1477330_1478227_+	GntR family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	1.0e-38	57.1
WP_007776158.1\|1478223_1478460_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_007776157.1\|1478459_1479638_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	3.4e-106	83.3
WP_007776155.1\|1479634_1479964_+\|protease	SOS-response repressor and protease LexA	S5FXP5	Shigella_phage	7.4e-19	50.0
WP_032968278.1\|1479960_1480716_+	hypothetical protein	A0A1R3Y5Q7	Salmonella_virus	3.1e-137	88.0
WP_032968904.1\|1480730_1481114_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	8.5e-51	76.4
WP_007776144.1\|1481302_1481626_+	antitermination protein	A0A192Y5X6	Salmonella_phage	8.5e-36	65.1
WP_105609544.1\|1481852_1482335_+	hypothetical protein	NA	NA	NA	NA
WP_032983761.1\|1482495_1482876_+	membrane protein	F1C592	Cronobacter_phage	1.0e-59	96.8
WP_007776138.1\|1482862_1483135_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.8e-18	55.2
WP_032983762.1\|1483142_1483766_+	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	6.8e-106	92.3
WP_032968274.1\|1483765_1484230_+\|lysis	lysis protein	F1C590	Cronobacter_phage	4.0e-34	57.7
WP_032968273.1\|1484429_1485020_-	hypothetical protein	NA	NA	NA	NA
WP_032968271.1\|1485019_1485454_-	hypothetical protein	NA	NA	NA	NA
WP_032968269.1\|1485616_1485970_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	4.3e-49	77.9
WP_032968268.1\|1486033_1486453_+	hypothetical protein	NA	NA	NA	NA
WP_007776129.1\|1486446_1486773_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	3.3e-27	51.9
WP_007776127.1\|1486910_1487240_+	DUF3168 domain-containing protein	A0A1P8DTJ3	Proteus_phage	1.2e-21	52.7
WP_004388601.1\|1487286_1487742_+	hypothetical protein	A0A1W6JP06	Morganella_phage	1.4e-55	75.0
WP_007776123.1\|1487790_1488186_+\|tail	phage tail assembly chaperone	F1C576	Cronobacter_phage	1.4e-59	88.5
WP_080629967.1\|1488310_1488781_+	hypothetical protein	I6PBN9	Cronobacter_phage	5.6e-60	69.9
WP_032983697.1\|1489957_1490353_+\|tail	tail fiber assembly protein	U5P0S4	Shigella_phage	3.1e-11	54.3
WP_014728470.1\|1490430_1490868_+	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	9.4e-78	100.0
WP_032983696.1\|1490851_1492114_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.0e-242	97.9

DBSCAN-SWA_4

1660029 : 1709071

Cronobacter_phage(40.98%)

lysis,protease,tail,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007777843.1\|1660029_1661316_-	DUF3596 domain-containing protein	A0A0P0ZGT7	Escherichia_phage	2.8e-138	59.0
WP_032804352.1\|1661349_1661598_-	excisionase family protein	S4TND0	Salmonella_phage	8.9e-17	51.9
WP_050555921.1\|1661638_1662193_-	hypothetical protein	A0A291AXI6	Shigella_phage	1.5e-35	48.1
WP_012125677.1\|1662834_1663023_-	hypothetical protein	NA	NA	NA	NA
WP_032967863.1\|1664130_1664334_-	hypothetical protein	R9TRD3	Aeromonas_phage	1.2e-22	77.3
WP_007777849.1\|1664330_1664813_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.2e-70	78.7
WP_071601099.1\|1665285_1665447_-	DUF2737 family protein	A0A1Q1PUW2	Escherichia_phage	6.0e-06	50.9
WP_144432653.1\|1665457_1665763_-	hypothetical protein	NA	NA	NA	NA
WP_071603024.1\|1665773_1666247_-	hypothetical protein	Q716E9	Shigella_phage	4.0e-74	82.7
WP_032967864.1\|1666258_1666687_-	single-stranded DNA-binding protein	A0A2H4JHK3	uncultured_Caudovirales_phage	5.4e-46	68.3
WP_007778080.1\|1666687_1667311_-	hypothetical protein	A0A1W6JP21	Morganella_phage	8.4e-72	68.8
WP_007841605.1\|1667307_1667451_-	hypothetical protein	A0A1R3Y5R4	Salmonella_virus	7.6e-13	78.7
WP_038882406.1\|1667440_1667629_-	DUF5444 family protein	A0A075B8F9	Enterobacteria_phage	6.9e-22	75.8
WP_071603025.1\|1667609_1667768_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	A0A075B8H4	Enterobacteria_phage	4.6e-19	82.7
WP_007778130.1\|1667793_1668762_-	hypothetical protein	G5DA88	Enterobacteria_phage	3.7e-50	93.2
WP_007893358.1\|1668847_1669075_-	hypothetical protein	NA	NA	NA	NA
WP_007778131.1\|1669195_1669375_-	hypothetical protein	NA	NA	NA	NA
WP_032967867.1\|1669434_1669917_-	hypothetical protein	G8C7T5	Escherichia_phage	3.2e-26	48.1
WP_032967868.1\|1669913_1670228_-	hypothetical protein	A0A0N7BZP1	Escherichia_phage	1.1e-14	51.0
WP_038882408.1\|1670593_1671283_-	helix-turn-helix transcriptional regulator	F1C5C2	Cronobacter_phage	2.2e-121	98.7
WP_012815642.1\|1671381_1671609_+	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	7.1e-13	55.4
WP_032971330.1\|1671727_1672006_+	hypothetical protein	A0A220NRS4	Escherichia_phage	1.5e-33	77.2
WP_085959971.1\|1672040_1672187_+	DUF2740 family protein	A0A075B8K7	Enterobacteria_phage	4.6e-13	75.0
WP_032967871.1\|1672179_1673037_+	replication protein	K7PL20	Enterobacteria_phage	2.6e-79	55.6
WP_038882411.1\|1673147_1675028_+	AAA family ATPase	B9UDH8	Salmonella_phage	0.0e+00	91.0
WP_038882413.1\|1675045_1675795_+	hypothetical protein	F1C5C5	Cronobacter_phage	7.1e-41	45.0
WP_007778493.1\|1676062_1676413_+	hypothetical protein	F1C5C6	Cronobacter_phage	3.5e-59	96.6
WP_007778496.1\|1676414_1676558_+	hypothetical protein	NA	NA	NA	NA
WP_038882415.1\|1676550_1676823_+	hypothetical protein	U5P0J0	Shigella_phage	7.7e-06	48.8
WP_041461066.1\|1677016_1677457_+	recombination protein NinB	F1C5C7	Cronobacter_phage	4.2e-70	91.8
WP_032967872.1\|1677453_1678029_+	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	9.5e-62	62.4
WP_071603027.1\|1678004_1678184_+	NinE family protein	G8C7M6	Escherichia_phage	2.3e-06	49.1
WP_007778601.1\|1678173_1678398_+	hypothetical protein	NA	NA	NA	NA
WP_007778604.1\|1678397_1678766_+	DUF2591 domain-containing protein	G8EYI2	Enterobacteria_phage	2.3e-24	54.7
WP_038882428.1\|1678758_1678935_+	NinF family protein	Q5G8S2	Enterobacteria_phage	2.6e-15	62.1
WP_038882429.1\|1678927_1679230_+	hypothetical protein	A0A220NQY7	Salmonella_phage	6.6e-14	45.7
WP_032968653.1\|1679222_1679834_+	recombination protein NinG	G0ZNC4	Cronobacter_phage	2.5e-105	97.0
WP_050570128.1\|1679830_1680022_+	hypothetical protein	A0A1R3Y5V4	Salmonella_virus	8.9e-09	57.1
WP_032967874.1\|1680018_1680198_+	hypothetical protein	NA	NA	NA	NA
WP_007778679.1\|1680427_1681018_+	hypothetical protein	F1C5D0	Cronobacter_phage	1.1e-108	98.5
WP_007778777.1\|1682112_1682304_-	hypothetical protein	NA	NA	NA	NA
WP_032986368.1\|1682515_1682761_+\|lysis	lysis protein	A0A2H4JCI1	uncultured_Caudovirales_phage	1.4e-27	85.7
WP_167346755.1\|1682769_1683267_+	glycoside hydrolase family protein	A0A2H4JCH1	uncultured_Caudovirales_phage	5.9e-68	71.2
WP_158506671.1\|1683405_1683939_+	HNH endonuclease	Q7Y5F9	Xanthomonas_virus	5.6e-32	46.5
WP_032967889.1\|1683928_1684393_+\|lysis	lysis protein	G0ZNC9	Cronobacter_phage	8.8e-50	73.2
WP_007779579.1\|1684556_1685261_+	DNA-binding protein Roi of bacteriophage BP-933W	Q5MBW0	Stx1-converting_phage	2.4e-99	81.3
WP_038882433.1\|1685361_1685604_+	hypothetical protein	NA	NA	NA	NA
WP_007779657.1\|1685636_1685837_+	hypothetical protein	NA	NA	NA	NA
WP_032967891.1\|1685846_1686341_+	ubiquitin carboxyl-hydrolase	Q716H4	Shigella_phage	6.7e-48	76.5
WP_007779660.1\|1686276_1687530_+\|terminase	phage terminase large subunit	I6RSK1	Salmonella_phage	4.4e-205	91.7
WP_007779663.1\|1688086_1689430_+	DUF1073 domain-containing protein	G0ZND5	Cronobacter_phage	1.2e-237	97.2
WP_032968667.1\|1689377_1690340_+\|capsid	minor capsid protein	G0ZND6	Cronobacter_phage	1.2e-24	80.6
WP_038882434.1\|1690356_1691631_+	hypothetical protein	G0ZND7	Cronobacter_phage	6.4e-236	99.1
WP_007786504.1\|1691630_1692083_+	hypothetical protein	G0ZND8	Cronobacter_phage	9.1e-76	98.7
WP_032986381.1\|1692097_1693195_+	hypothetical protein	G0ZND9	Cronobacter_phage	5.2e-210	99.7
WP_032967896.1\|1693205_1693502_+	hypothetical protein	G0ZNE0	Cronobacter_phage	1.3e-46	93.9
WP_032967897.1\|1693560_1693962_+	hypothetical protein	G0ZNE1	Cronobacter_phage	6.0e-71	99.2
WP_071603028.1\|1693961_1694132_+	50S ribosomal protein L13	Q5G8X7	Enterobacteria_phage	9.1e-13	50.0
WP_007779732.1\|1694134_1694485_+	hypothetical protein	G0ZNE2	Cronobacter_phage	2.3e-55	86.1
WP_007779733.1\|1694486_1694948_+	hypothetical protein	A0A291AXD9	Shigella_phage	1.4e-28	45.8
WP_032967899.1\|1694944_1695325_+	hypothetical protein	F1C5E4	Cronobacter_phage	2.7e-28	44.9
WP_032967901.1\|1695382_1696138_+	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	2.4e-57	52.2
WP_007779740.1\|1696191_1696881_+	hypothetical protein	A0A1W6JNX2	Morganella_phage	5.9e-50	46.4
WP_032967902.1\|1696953_1697331_+	hypothetical protein	NA	NA	NA	NA
WP_007779743.1\|1697390_1700321_+\|tail	phage tail length tape-measure protein 1	F1C5E9	Cronobacter_phage	1.1e-142	48.2
WP_007779747.1\|1700320_1700818_+	hypothetical protein	F1C5F0	Cronobacter_phage	3.3e-95	97.0
WP_032967903.1\|1700817_1701288_+	hypothetical protein	F1C5F1	Cronobacter_phage	5.7e-81	94.9
WP_050555926.1\|1701250_1701667_+	C40 family peptidase	F1C5F2	Cronobacter_phage	1.7e-73	92.0
WP_032967906.1\|1701653_1704131_+\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	90.4
WP_038882437.1\|1704187_1706332_+	hypothetical protein	F1C5A8	Cronobacter_phage	3.2e-54	72.3
WP_007775782.1\|1706352_1707798_-	hypothetical protein	NA	NA	NA	NA
WP_059223196.1\|1707794_1708712_-	glycosyltransferase family 2 protein	F1C5B0	Cronobacter_phage	1.7e-166	96.7
WP_007775768.1\|1708708_1709071_-	GtrA family protein	F1C5B1	Cronobacter_phage	8.9e-58	97.5

DBSCAN-SWA_5

2323160 : 2333357

Bacillus_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007783693.1\|2323160_2323625_-	lipoprotein nlpC precursor	S5MM68	Bacillus_phage	2.8e-11	36.9
WP_007783690.1\|2323702_2324449_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	3.8e-10	30.7
WP_004387815.1\|2324448_2325000_-	glutathione peroxidase	NA	NA	NA	NA
WP_032968130.1\|2325029_2326031_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_007676383.1\|2326108_2326408_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_007783675.1\|2326412_2328800_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	2.8e-06	26.0
WP_007792775.1\|2328815_2329799_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.4e-33	42.6
WP_023898905.1\|2330017_2330164_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_007783664.1\|2330183_2330540_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_001124225.1\|2330587_2330785_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_012905609.1\|2330882_2331425_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.1e-14	32.3
WP_004387090.1\|2331428_2333357_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.1e-130	37.6

DBSCAN-SWA_6

3189279 : 3214000

Ralstonia_phage(28.57%)

protease,transposase,integrase

attL 3189048:3189089|attR 3217196:3217237

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3189048:3189089	attL	NA	NA	NA	NA
WP_007780382.1\|3189279_3190599_+\|integrase	integrase family protein	A0A221SAN4	Ralstonia_phage	4.5e-06	27.7
WP_016246899.1\|3191479_3192244_+	hypothetical protein	NA	NA	NA	NA
WP_071601457.1\|3192705_3193326_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_071601456.1\|3195761_3196025_-\|transposase	transposase	NA	NA	NA	NA
WP_001295708.1\|3196039_3196303_+	hypothetical protein	NA	NA	NA	NA
WP_080601204.1\|3196531_3196708_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_007780320.1\|3196847_3197417_+	small heat shock protein sHSP20	NA	NA	NA	NA
WP_032986565.1\|3197522_3200372_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	4.0e-129	41.1
WP_032986562.1\|3200619_3202437_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	C7U047	Ostreococcus_tauri_virus	2.1e-99	41.0
WP_001275372.1\|3202524_3202983_+	small heat shock protein sHSP20-GI	NA	NA	NA	NA
WP_001022485.1\|3203005_3203920_+	heat resistance protein YfdX1	NA	NA	NA	NA
WP_007791120.1\|3204021_3204909_+	heat resistance protein YfdX2	NA	NA	NA	NA
WP_001090779.1\|3204998_3205610_+	heat resistance membrane protein HdeD-GI	NA	NA	NA	NA
WP_007780005.1\|3205689_3206835_+	hypothetical protein	NA	NA	NA	NA
WP_029039045.1\|3206824_3207265_+	heat resistance system thioredoxin Trx-GI	A0A1J0GW78	Streptomyces_phage	5.8e-11	37.2
WP_023899359.1\|3207268_3208978_+	heat resistance system K+/H+ antiporter KefB-GI	NA	NA	NA	NA
WP_032967912.1\|3208980_3209478_+	heat resistance protein PsiE-GI	NA	NA	NA	NA
WP_007779958.1\|3209455_3210421_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_023899362.1\|3210445_3211597_+\|protease	trypsin-like serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	9.9e-26	30.3
WP_007777755.1\|3211821_3212802_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	1.5e-91	57.0
WP_085959969.1\|3212852_3214000_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	8.6e-147	93.0
3217196:3217237	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP013940.1|WP_007778777.1|1682112_1682304_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP013940.1|WP_007778777.1|1682112_1682304_-|hypothetical-protein

1682112_1682304_-

63 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|67	0.6666666666666666	1	1.0

1660029-1709071

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013940

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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