CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012265	Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence	0 crisprs	WYL,csa3	0	0	0	0
NZ_CP012264	Cronobacter condimenti 1330 strain LMG 26250 chromosome, complete genome	2 crisprs	DEDDh,DinG,cas3,csa3,WYL	0	3	4	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012264_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012264_1

838712-838919

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGCGCAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCGCAGGCAGCTTAGAAA	CRT

3 spacers

The CRISPR arrays of NZ_CP012264_1

>merge|NZ_CP012264|1|838712-838919|CRISPRCasFinder,CRT
GTTCACTGCCGTACAGGCAGCTTAGAAAGCGAGGCGATACGAATCGGTCGCGCAAAAGGTGTTCACTGCCGCGCAGGCAGCTTAGAAAAACGACGTGCGGCTGATGCGCACGCTTGACGGGTTCACTGCCGCGCAGGCAGCTTAGAAAGCGGAAATGGGGAGGGTGAGCGTTGGCCGGTCGTTCACTGCCGCGCAGGCAGCCACAAAC

>NZ_CP012264|1|1|838712-838919|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCGAGGCGATACGAATCGGTCGCGCAAAAGGT
GTTCACTGCCGCGCAGGCAGCTTAGAAA	AACGACGTGCGGCTGATGCGCACGCTTGACGG
GTTCACTGCCGCGCAGGCAGCTTAGAAA	GCGGAAATGGGGAGGGTGAGCGTTGGCCGGTC
GTTCACTGCCGCGCAGGCAGCCACAAAC

>NZ_CP012264|1|1|838712-838919|CRT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCGAGGCGATACGAATCGGTCGCGCAAAAGGT
GTTCACTGCCGCGCAGGCAGCTTAGAAA	AACGACGTGCGGCTGATGCGCACGCTTGACGG
GTTCACTGCCGCGCAGGCAGCTTAGAAA	GCGGAAATGGGGAGGGTGAGCGTTGGCCGGTC
GTTCACTGCCGCGCAGGCAGCCACAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012264.1\|WP_053532109.1\|835244_835628_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012264.1\|WP_015386992.1\|837987_838335_-\|YacC-family-pilotin-like-protein	unknown	unknown	gnl\|CDD\|370620
NZ_CP012264.1\|WP_071884227.1\|840706_843103_-\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|274418
NZ_CP012264.1\|WP_007676938.1\|844656_845583_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP012264.1\|WP_032984667.1\|837012_837864_-\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843
NZ_CP012264.1\|WP_007676962.1\|826092_828756_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_CP012264.1\|WP_007676944.1\|843295_843832_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|185321
NZ_CP012264.1\|WP_007676942.1\|843885_844548_-\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|182460
NZ_CP012264.1\|WP_007676937.1\|845579_846350_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
NZ_CP012264.1\|WP_007676956.1\|835810_836176_+\|YacL-family-protein	unknown	unknown	gnl\|CDD\|235372
NZ_CP012264.1\|WP_007676954.1\|836203_836998_-\|adenosylmethionine-decarboxylase	unknown	unknown	gnl\|CDD\|235480
NZ_CP012264.1\|WP_007676961.1\|828770_830669_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NZ_CP012264.1\|WP_085960980.1\|832561_835159_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NZ_CP012264.1\|WP_007676934.1\|848241_848622_-\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
NZ_CP012264.1\|WP_007676948.1\|839004_840576_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|236810
NZ_CP012264.1\|WP_007676935.1\|846947_848195_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213024
NZ_CP012264.1\|WP_004388373.1\|830876_832301_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP012264.1\|WP_007676936.1\|846436_846868_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
NZ_CP012264.1\|WP_053531724.1\|848719_849574_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP012264.1\|WP_007676963.1\|825071_825836_+\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	unknown	unknown	gnl\|CDD\|181879

Protein	Function_ID	Function_description	E-value
NZ_CP012264.1\|WP_015386992.1\|837987_838335_-\|YacC-family-pilotin-like-protein	gnl\|CDD\|370620	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS). This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae (P20440), the OutS protein of Erwinia chrysanthemi (Q01567) and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In the pilotin from this four-helix protein from enterohemorrhagic Escherichia coli, the straight helix alpha2, the curved helix alpha3 and the bent helix alpha4 surround the central N-terminal helix alpha1. These helices create a prominent groove, mainly formed by side chains of helices 1,2 and 3 suggesting this groove is important as a binding site.	1.59692e-07
NZ_CP012264.1\|WP_071884227.1\|840706_843103_-\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NZ_CP012264.1\|WP_007676938.1\|844656_845583_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.23834e-102
NZ_CP012264.1\|WP_032984667.1\|837012_837864_-\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	2.51809e-178
NZ_CP012264.1\|WP_007676962.1\|826092_828756_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_CP012264.1\|WP_007676944.1\|843295_843832_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|185321	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional.	8.10925e-114
NZ_CP012264.1\|WP_007676942.1\|843885_844548_-\|carbonate-dehydratase	gnl\|CDD\|182460	PRK10437, PRK10437, carbonic anhydrase; Provisional.	9.73741e-169
NZ_CP012264.1\|WP_007676937.1\|845579_846350_+\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	9.91192e-174
NZ_CP012264.1\|WP_007676956.1\|835810_836176_+\|YacL-family-protein	gnl\|CDD\|235372	PRK05248, PRK05248, hypothetical protein; Provisional.	4.22362e-68
NZ_CP012264.1\|WP_007676954.1\|836203_836998_-\|adenosylmethionine-decarboxylase	gnl\|CDD\|235480	PRK05462, PRK05462, adenosylmethionine decarboxylase.	0
NZ_CP012264.1\|WP_007676961.1\|828770_830669_+\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NZ_CP012264.1\|WP_085960980.1\|832561_835159_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NZ_CP012264.1\|WP_007676934.1\|848241_848622_-\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	4.2194e-75
NZ_CP012264.1\|WP_007676948.1\|839004_840576_+\|multicopper-oxidase-CueO	gnl\|CDD\|236810	PRK10965, PRK10965, multicopper oxidase; Provisional.	0
NZ_CP012264.1\|WP_007676935.1\|846947_848195_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213024	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins. This family contains an uncharacterized protein yadE from Escherichia coli and its bacterial homologs. Although its molecular function remains unknown, yadE shows high sequence similarity with the catalytic NodB homology domain of outer membrane lipoprotein PgaB and the surface-attached protein intercellular adhesion protein IcaB. Both PgaB and IcaB are essential in bacterial biofilm formation.	8.39141e-62
NZ_CP012264.1\|WP_004388373.1\|830876_832301_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP012264.1\|WP_007676936.1\|846436_846868_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	1.10397e-37
NZ_CP012264.1\|WP_053531724.1\|848719_849574_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	2.32997e-169
NZ_CP012264.1\|WP_007676963.1\|825071_825836_+\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	gnl\|CDD\|181879	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR.	2.37776e-167

>NZ_CP012264.1|WP_015386992.1|837987_838335_-|YacC-family-pilotin-like-protein
MRKVVRLMFLGCLLAFSTNSFALSESEAEDMADLTAVFVFLKNDCGYQNLPNGQIRRALVFFAQQNQWDLSNYDSFNMKALGEDSYRDLSGIAIPTAKKCKALARDSLSLLAYVK
>NZ_CP012264.1|WP_032984667.1|837012_837864_-|polyamine-aminopropyltransferase
MWHETLHDQFGQYFALDKVLYREKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKRVLIIGGGDGAMLREVTRHQNVESITMVEIDAGVVAFCREHLPNHNAGSYDDPRFTLVIDDGVNFVNQTTQKFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNQGGIFVAQNGVCFLQQDEAIGSHKKLSHYFSDVSFYQAAIPTYYGGIMTFAWATDNEALRKLPLETLQARFHAAGLKCRYYNSAIHTAAFALPQYLQDALASQAS
>NZ_CP012264.1|WP_007676954.1|836203_836998_-|adenosylmethionine-decarboxylase
MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILTETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPQLIDKTEHPGPLPETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDVNGMKHFIDHEINSIQNFMSVDIKSLYDMMDVNVYQENIFHTKMLLKEFDLKHYMFHTRPEELTEEERKVITDLLWKEMREIYYGRNIPSV
>NZ_CP012264.1|WP_007676956.1|835810_836176_+|YacL-family-protein
MDYEFLRDITGVVKVRLSMGHEALGYWFNEEVKGNLALLDEVEAAARDVKGSERQWQKTGHEYTLWLDGEEVMVRANQLEFSGDEMEEGMSYYDEESLSLCGVEDFLQVVKAYRDFLAQYG
>NZ_CP012264.1|WP_053532109.1|835244_835628_-|hypothetical-protein
MKFSLHHALLLATAALPLSYACAGEAVRLDCVNRGNVLVSFFKYRLSTMKWENHFQIASGIEKSKTESGVPYETISFRNGDDLIYFPEKERYVLFDAGKQKPERCQVEGEFTYPVVSLPRYDGKAAS
>NZ_CP012264.1|WP_085960980.1|832561_835159_+|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLEEYRKHVAERAAEGIVAKPLDATQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEAAYVKAGFLAAVAKGEASSPLVTPEKAVELLGTMQGGYNIHPLIEALDNDTLAPIAAKALSHTLLMFDNFYDVEEKAKAGNAYAKQIMQSWADAEWFLSRPALADKITVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGSVGPIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGVVLGGKIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDIYPFKGEVRHHETGELLASFELKTDVLIDEVRAGGRIPLIIGRGLTTKAREALGLPHSEVFRHAKDVAESNRGYSLAQKMVGRACGVAGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVTTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGQMQPGITLRDLVHAIPYYAIQQGLLTVEKKGKKNIFSGRILEIEGLPELKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLADPQLLEADADAEYAAVIDIDLNEIKEPILCAPNDPDDARLLSAVTGDKIDEVFIGSCMTNIGHFRAAGKLLDTHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVYLASAELAAVAALIGRLPTPDEYQQFMSQVDKTAVDTYRYLNFDQLNQYTEKADGVIFQTAV
>NZ_CP012264.1|WP_004388373.1|830876_832301_+|dihydrolipoyl-dehydrogenase
MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLSGMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRVWDSTDALELKEVPKRMLVMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADKDVVKVFTKRISKKFNLMLETKVTAVEAKEDGIYVSMEGKKAPAEAQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQMRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVIAGMKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKETHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK
>NZ_CP012264.1|WP_007676961.1|828770_830669_+|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MAIEINVPDIGADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVSVGDKVETGKLIMIFDSADGAADAAPAKAEEKKEAAPAQSAAPAAAAAKEVNVPDIGGDEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKINTGDKVSTGSLIMVFEVAGAAPAAEAKPQVTEQAASAPAAAAGAKDVNVPDIGGDEVEVTEVLVKVGDKVTAEQSLITVEGDKASMEVPAPFAGTVKELKVNVGDKVSTGSLIMVFEVEGAAPAAAPAAKQEAAAPAPAKAEKPAAAPAKAEGKSEFAENDAYVHATPLIRRLAREFGVNLAKVKGTGRKGRILREDVQAYVKDAVKRAESAPAAATGGGIPGMLPWPKVDFSKFGEVEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITDLEAFRKQQNAEAEKRKLDVKFTPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVVPVFKDVNKKSITELSRELTVISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSDIRRLVM
>NZ_CP012264.1|WP_007676962.1|826092_828756_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSERLQNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLSEARKGGVKVAAGSAARQYINTIPVEEEPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYEVCFNHFFRARNDKDGGDLVYFQGHISPGVYARAFVEGRLTEEQMNNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSEQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFDGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVAEWSDDEIWALNRGGHDPKKIYAAFKKAKETKGKATVILAHTVKGYGMGDTAEGKNIAHQVKKMNMDGVRYVRDRFSVPVTDENLEKLPYITFPEGSEEHKYLHERRQALHGYLPSRQPKFSEKLELPALEDFRSLLDEQSKEISTTIAFVRALNVMLKNPSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGASWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLQRMYGEAQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLDTLEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPMETPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGELAKRGEIDKKVVADAITKFNIDAEKVNPRLA
>NZ_CP012264.1|WP_007676963.1|825071_825836_+|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR
MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFVQNTLWQSFSDPLVELLSDHPESQFDLLETRHALEGIAAYYAALRSTDEDRTRIRECHQAIEHAQESGDLDAESNAVVQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNFELLYARREMLPLVSSHRTRIYEAIMAREPEQAREASHRHLAFIEEILLDRSREQSRRDRSLRRLEQRKN
>NZ_CP012264.1|WP_007676948.1|839004_840576_+|multicopper-oxidase-CueO
MQRRDFIKYTAALGALSALPTWSRGAFAAEQPALPIPALLTPDARSRIQLTATAGKTAFAGKNVTTWGYNGSLLGPAIKLRQGKPVTVDIRNTLGEETTVHWHGLEVPGEVDGGPQGVISPGQTRSVSFTPEQRAATCWFHPHQHGKTGHQVAMGLAGLLLIEDTESLQLMLPKIWGVDDVPLIIQDKKFTAAGEVDYQLDVMTAAVGWFGDTLLCNGAVYPRHTPPKGWLRLRLLNGCNARTLKIAASDNRPLYVIASDGGLLAEPVKVTELPMLMGERFEVLVETSDAKPFDIVTLPVTQMGMTVAPFDKPQPVVRIQPVVVPASGMLPDKLVEVSALPALDGLQERWLQLMMDPMLDMMGMQALTKRYGKQALAGNPHGQMMSQMEHMGHGKMSQGGMGHGGNGFDFHNANKINGKAFDMNAPAFAASLGKYERWTVSGEGDMMLHPFHIHGAQFRILTENGKPPAAHRAGWKDTVWVEGARSEVVVRFDYAASAEHAYMAHCHLLEHEDTGMMLGFTVA
>NZ_CP012264.1|WP_071884227.1|840706_843103_-|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase
MAETKKTQSRLLVILTALFAALSGLYLLVGGIWLVSIGGSWYYPIAGVGMLATAWLLWKRNAAALWLYAIILLGTMAWGIWEVGFDFWALTPRCDILVFFGVWLILPFVWRRLHTPSRAGVPALLVSLIITAGLLFWAGFNDPQEVNGTLSADSTPAAVNGSQDIPDGDWPAYGRNQEGQRYSPLKQINTDNVHQLKEAWVFRTGDLKLPNDPGEITNEVTPIKVGDTLFLCTAHQRLFAVDAATGKEKWHFDPQLNTNPTFQHVTCRGVSYHEATTANASPDVVADCPRRIILPVNDGRLFAVNADNGKLCESFANKGILNLQTNMPVTTPGMYEPTSPPIVTDKVIVIAGAVTDNFSTREPSGVIRGFDINTGKLLWAFDPGAKDPNAIPADEHHFSLNSPNSWAPASYDAKLDIVYLPMGVTTPDIWGGNRTPEQERYASAIVALNASTGKLVWSYQTVHHDLWDMDLPAQPTLADITVKGETVPVIYAPAKTGNIFVLDRRNGKLVVPAPEKPVPQGAAKGDYVTPTQPFSDLSFRPKKDLSGADMWGATMYDQLVCRVMFHSLRYEGIFTPPSEQGTLVFPGNLGMFEWGGLAVDPHRQVAIANPMALPFVSKLIPRGPGNPMEQPKDAQGTGSESGIQPQYGVPFGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEVVWKKRIGTPRDSMPFPMPFPVPFNMGMPMLGGPITTGGNVLFIGATADNYLRAYNVTNGEKLWEARLPAGGQATPMTYEVNGKQYVVLSAGGHGSFGTKMGDYIVAYALPDDAK
>NZ_CP012264.1|WP_007676944.1|843295_843832_+|hypoxanthine-phosphoribosyltransferase
MKHTVEVMISEAEIKARVEELGRQITERYQDSGSEMVLVGLLRGSFMFMADLCRQVHVAHEVDFMTASSYGSGMSSTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVDVEFVGFSIPDKFVVGYGIDYAQRYRHLPYIGNVVMLDE
>NZ_CP012264.1|WP_007676942.1|843885_844548_-|carbonate-dehydratase
MKDISTLISNNELWSKMLVEEDPGFFERLAQAQKPRFLWIGCSDSRVPAERLTGLEPGEIFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELGLINNWLLHIRDIWFKHSSLLGELPQEKRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGRLRDLDVTATSRETLEQRYRNGVCNIQKTHASHK
>NZ_CP012264.1|WP_007676938.1|844656_845583_+|ABC-transporter-ATP-binding-protein
MTIALELEQLKKTYPGGVQALRGIDLKVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRIRVFGYDLERDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERREAVERSEKYLKQLDLWEKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQRGELVENTSMKSLLSKLKSETFILDLAAKSPLPKLDGYQYRLVDTSTLEVEVLREQGINSVFNQLTAQGVQVLSMRNKANRLEELFVTLVNEKQGERA
>NZ_CP012264.1|WP_007676937.1|845579_846350_+|ABC-transporter-permease
MMQLYWVALKSIWAKEVNRFARIWVQTLVPPVITMTLYFIIFGNLIGSRIGEMHGFSYMQFIVPGLIMMAVITNSYANVASSFFSAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLCVGVLVTAVSLFFVPFQVHSWLFVGLTLLMTAILFSLAGLLNAVFAKTFDDISLIPTFVLTPLTYLGGVFYSLTLLPPFWQALSHLNPIVYMISGFRFGFLGISDVPLLFTVAVLACFIIAFYLLCWYLISRGRGLRS
>NZ_CP012264.1|WP_007676936.1|846436_846868_+|PTS-sugar-transporter-subunit-IIA
MLGWVIACHDYVARDYAQQLEARFGALPLCRTVDYWTGLSTNMLSRMMCDALWHADGGDGVIFLTDTPGGAPYRVAALMSHKHPHSEVIAGISLPLLVQMYPQRASLDSATFRDAMVKAGGESVTSLWHQQQKNPPFVLLHDK
>NZ_CP012264.1|WP_007676935.1|846947_848195_+|polysaccharide-deacetylase-family-protein
MLNRLFFSLLLMVASVAQASLLDGEHLPAQYMQTTEDAAIWAKVGDNVQTVGTIREGQLLAVVPIAADYYEFRFGFGTGFIDKAHLTDVQGDNRVRDSLGDLNKPLSNQNLLTWRDVTVYNEPDVNSAPLGTLAENLRYPIVGKLKDRLNQTWFQIRIGNRLGYISSLDAQEDNGIPVLTYHHILHDEENTRFRHTSTTTSVRAFSNQMTWLRDQGYATLSLYDLDGYVHNRVNLPARAVVITFDDGLKSVYRYAYPVLKAYGFKATAFIISSRIKRQPQRWDPKSLQFMSVAELKAIQDVFDIQSHTHFLHRTDAAHHPILLSRTYHNILFDYKRSRRALAQFNPHVLFLSYPFGGYDDKAVKAAGDAGFHLAVTTVKGKVKPGDNPFLLKRLYILRTDSLETMAKIISNQPQG
>NZ_CP012264.1|WP_007676934.1|848241_848622_-|aspartate-1-decarboxylase
MIRTMLQGKLHRVKVTQADLHYEGSCAIDQNFLEAAGILEYEAIDIYNVTNGKRFSTYAIAGERGSKIISVNGAAAHCADVGDILIIASYVTMPDEQARSWQPKVAYFDGDNEMKRTAKAVPVQVA
>NZ_CP012264.1|WP_053531724.1|848719_849574_-|pantoate--beta-alanine-ligase
MLIIETLPLLRQHIRRLRMEGKRIALVPTMGNLHDGHMKLVDEAKTHADAVVVSIFVNPMQFDRADDLARYPRTLQEDCEKLKKRGADIVFAPTPEEVYPQGMGEQTFVDVPGISTILEGASRPGHFRGVSTVVSKLFNLVQPDVACFGEKDYQQLALIRKMVADMGYDIDIIGVPTVRAKDGLALSSRNGYLTSDQRKIAPGLSKVMNAMAEKLRAGDRDLDGIIAAAAQALSEKGFRPDDLQIRDADTLLALNPGSQRAVILMAAWLGQARLIDNQTVELAQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP012264_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012264_2

2668434-2668512

Orphan

Consensus_repeat	Method
GACGATCTGTGGGCTGATGCACTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012264_2

>merge|NZ_CP012264|2|2668434-2668512|CRISPRCasFinder
GACGATCTGTGGGCTGATGCACTGAAAGAACAAAAAAGCACCGGTGACGACGCTGACGATCTGTGGGCCGATGCACTGA

>NZ_CP012264|2|2|2668434-2668512|CRISPRCasFinder
GACGATCTGTGGGCTGATGCACTGA	AAGAACAAAAAAGCACCGGTGACGACGCT
GACGATCTGTGGGCCGATGCACTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012264.1\|WP_071884321.1\|2672193_2672715_-\|protein-DsrB	unknown	unknown	gnl\|CDD\|182664
NZ_CP012264.1\|WP_004388139.1\|2669982_2670252_+\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP012264.1\|WP_007670238.1\|2663718_2665089_+\|flagellum-specific-ATP-synthase-FliI	unknown	unknown	gnl\|CDD\|181182
NZ_CP012264.1\|WP_007670254.1\|2667391_2668396_+\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP012264.1\|WP_007670263.1\|2669233_2669971_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP012264.1\|WP_007670225.1\|2656464_2659584_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_CP012264.1\|WP_007670271.1\|2670263_2671052_+\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP012264.1\|WP_007670260.1\|2668856_2669234_+\|flagellar-type-III-secretion-system-protein-FliO	unknown	unknown	gnl\|CDD\|183160
NZ_CP012264.1\|WP_007670226.1\|2659758_2660070_-\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|178948
NZ_CP012264.1\|WP_007670236.1\|2663014_2663719_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235562
NZ_CP012264.1\|WP_007670228.1\|2661999_2663022_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|272961
NZ_CP012264.1\|WP_007670248.1\|2665550_2666810_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|236652
NZ_CP012264.1\|WP_007670227.1\|2660299_2662003_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NZ_CP012264.1\|WP_007670293.1\|2675984_2676899_-\|DUF808-family-protein	unknown	unknown	gnl\|CDD\|182217
NZ_CP012264.1\|WP_007670282.1\|2673021_2673837_+\|mannosyl-3-phosphoglycerate-phosphatase-related-protein	unknown	unknown	gnl\|CDD\|179628
NZ_CP012264.1\|WP_007670288.1\|2675712_2675895_-\|DUF2158-domain-containing-protein	unknown	unknown	gnl\|CDD\|227762
NZ_CP012264.1\|WP_007670251.1\|2666913_2667387_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|235909
NZ_CP012264.1\|WP_007670285.1\|2673840_2675511_-\|cellulose-biosynthesis-regulator-YedQ	unknown	unknown	gnl\|CDD\|237964
NZ_CP012264.1\|WP_032984275.1\|2671400_2672024_+\|transcriptional-regulator-RcsA	unknown	unknown	gnl\|CDD\|185309
NZ_CP012264.1\|WP_007670240.1\|2665110_2665554_+\|flagella-biosynthesis-chaperone-FliJ	unknown	unknown	gnl\|CDD\|235563

Protein	Function_ID	Function_description	E-value
NZ_CP012264.1\|WP_071884321.1\|2672193_2672715_-\|protein-DsrB	gnl\|CDD\|182664	PRK10708, PRK10708, protein DsrB.	5.03493e-43
NZ_CP012264.1\|WP_004388139.1\|2669982_2670252_+\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	1.34907e-34
NZ_CP012264.1\|WP_007670238.1\|2663718_2665089_+\|flagellum-specific-ATP-synthase-FliI	gnl\|CDD\|181182	PRK07960, fliI, flagellum-specific ATP synthase FliI.	0
NZ_CP012264.1\|WP_007670254.1\|2667391_2668396_+\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	2.93202e-176
NZ_CP012264.1\|WP_007670263.1\|2669233_2669971_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	2.77494e-130
NZ_CP012264.1\|WP_007670225.1\|2656464_2659584_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP012264.1\|WP_007670271.1\|2670263_2671052_+\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	1.20094e-79
NZ_CP012264.1\|WP_007670260.1\|2668856_2669234_+\|flagellar-type-III-secretion-system-protein-FliO	gnl\|CDD\|183160	PRK11486, PRK11486, flagellar type III secretion system protein FliO.	1.12053e-65
NZ_CP012264.1\|WP_007670226.1\|2659758_2660070_-\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|178948	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed.	1.95102e-35
NZ_CP012264.1\|WP_007670236.1\|2663014_2663719_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	2.73811e-96
NZ_CP012264.1\|WP_007670228.1\|2661999_2663022_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|272961	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family. [Cellular processes, Chemotaxis and motility].	2.17765e-155
NZ_CP012264.1\|WP_007670248.1\|2665550_2666810_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|236652	PRK10118, PRK10118, flagellar hook length control protein FliK.	3.8204e-114
NZ_CP012264.1\|WP_007670227.1\|2660299_2662003_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	0
NZ_CP012264.1\|WP_007670293.1\|2675984_2676899_-\|DUF808-family-protein	gnl\|CDD\|182217	PRK10062, PRK10062, hypothetical protein; Provisional.	0
NZ_CP012264.1\|WP_007670282.1\|2673021_2673837_+\|mannosyl-3-phosphoglycerate-phosphatase-related-protein	gnl\|CDD\|179628	PRK03669, PRK03669, mannosyl-3-phosphoglycerate phosphatase-related protein.	2.41786e-171
NZ_CP012264.1\|WP_007670288.1\|2675712_2675895_-\|DUF2158-domain-containing-protein	gnl\|CDD\|227762	COG5475, COG5475, Uncharacterized small protein [Function unknown].	5.73191e-20
NZ_CP012264.1\|WP_007670251.1\|2666913_2667387_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|235909	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed.	8.12238e-88
NZ_CP012264.1\|WP_007670285.1\|2673840_2675511_-\|cellulose-biosynthesis-regulator-YedQ	gnl\|CDD\|237964	PRK15426, PRK15426, cellulose biosynthesis regulator YedQ.	0
NZ_CP012264.1\|WP_032984275.1\|2671400_2672024_+\|transcriptional-regulator-RcsA	gnl\|CDD\|185309	PRK15411, rcsA, transcriptional regulator RcsA.	2.24502e-135
NZ_CP012264.1\|WP_007670240.1\|2665110_2665554_+\|flagella-biosynthesis-chaperone-FliJ	gnl\|CDD\|235563	PRK05689, fliJ, flagella biosynthesis chaperone FliJ.	1.21715e-54

>NZ_CP012264.1|WP_007670254.1|2667391_2668396_+|flagellar-motor-switch-protein-FliM
MGDSILSQAEIDALLNGDSEQGAEQQASAGDGDIRPYDPNTQRRVVRERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEAYSDAWKAINPLDVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLREMLVNPPLENSRQEDQHWRDNLVRQVQHSELELIANFAEIPLRLSKILKLKPGDVLPIEKPDRILVHVDGVPVLTSQYGTVSGQYALRVEHLINPILNSLNEEQPNE
>NZ_CP012264.1|WP_007670251.1|2666913_2667387_+|flagellar-basal-body-associated-protein-FliL
MTDSAITKGKGRKRSIWIPLLVLITLAACATAGYSYWRMQQHGPSEAKAAPEPPPAPVFFALDTFTVNLGDADRVLYVGITLRLKDDATRQRLSDYLPEVRSRLLLLFSRQDASQLATDEGKQKLVEAIKQTLSAPLVAGQPKQVVTDVLYTAFILR
>NZ_CP012264.1|WP_007670248.1|2665550_2666810_+|flagellar-hook-length-control-protein-FliK
MITLPNVVLTNDVDPTAGGTGLKGVDAKGGDAAQDFLALLGQHFQGELTLADGKTLTLAQLQGAGKEALTGKALQDATATQPGGPGDLARLLDQLTNGDITSVDLTLATGKVATQTDVKAGQSLKTAGLDDDKKLSDEDMAAFSALFAMLPNAQQPNATPVTTAQTQGIAALGANGVNPANSLLQGTGFAKSDAKTSAKADDAATPLTAAAGNAPVTAQAPADVVAPTAALDKTAADVSSTQLAHNLNLHAQTMTPSALSQQNSAPVMTMPTPQVTAPFGSPDWQNSVSQHITLFTRNGQQSAELRLHPEELGAVQISLKIDDNMAQVQMVSPHSHVRAALEAALPTLRAQLAESGIQLGQSSISSENFNGQQQQNNPQQSASSRSGSGFGSGGEEDAIVAPASLQAAARGNGAVDIFA
>NZ_CP012264.1|WP_007670240.1|2665110_2665554_+|flagella-biosynthesis-chaperone-FliJ
MKQNGALNTLKDMAEKEVDDAALRLGEMRRGCQQAQEQLSMLMNYQQEYRNNLNDTMTQGIASNRWVNYQQFIQTLEKAIDQHRLQLTQWNTKVDQALSFWKEKKQRLQAWETLQDRQASAALLAENRLDQKRMDEFAQRASMRKGE
>NZ_CP012264.1|WP_007670238.1|2663718_2665089_+|flagellum-specific-ATP-synthase-FliI
MTARLTRWLNTLDNFETKMAQLPSVRRYGRLTRATGLVLEATGLQLPLGATCIIERQEGTQLQEVESEVVGFNGQKLFLMPLEEVEGILPGARVYARAAHGEGLQSSKQLPLGPQLLGRVLDGAGKPLDGLPSPDTETTGALMTPPFNPLQRTPIEDVLDVGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGITGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRVMTSIISEQHYARVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDRAITLWPQLEAFLQQGIYERSGVEDALQALELIFPSV
>NZ_CP012264.1|WP_007670236.1|2663014_2663719_+|flagellar-assembly-protein-FliH
MSSKLPWQRWMPDDLAPPVMPEFKAFDETVSGEDEEVDEDQLRLQQQQQALVMMQTQAHEQGYNAGLAEGRQQGFEQGRQEGYAKGLEQGLAEARAQQGPIHARMQQLVSEFQYTLDALDSVIASRLMQMALEAARQVIGHVQVDNNHLIKQIQTLLQQEPLFSGKPQLRVHPDDLQRVEEMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV
>NZ_CP012264.1|WP_007670228.1|2661999_2663022_+|flagellar-motor-switch-protein-FliG
MSNANSNANTTGLSGTDKSAILLMTIGEDRAAEVFKHLSPREVQHLSAAMASVRQISNKQLTDVLAEFEQEAEQFAALSINTNDYLRSVLVKALGEERASSLLEDILDSKETTSGMETLNFMEPQSAADLIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLNNLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGDLAQKIIDEMFLFENLVEVDDRSIQRLLQEVESESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLSQVENEQKAILLVVRRLAETGEMVIGSGEDTYV
>NZ_CP012264.1|WP_007670227.1|2660299_2662003_+|flagellar-M-ring-protein-FliF
MTAAASTQTPQNKTVEWLNRLRANPKIPLMVAGAAAVAIIVALVLWAKQPDYRVLYSNLSDQDGGAIVTQLTQMNIPYSFSDNGAAIMVPAEKVHELRLRLAQQGLPKGGAVGFELMDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTLNLEPGRAMDEGQIAAVVHMVSSAVAGLPPGNVTLVDQAGHLLTQSGTAGRDLNDAQLKYAADVEGRIQRRIESILAPIVGSGNVHAQVTAQIDFSNKEQTEEQYRPNSDPAQMAVRSRQLNTNDQVGGANPGGVPGALSNQPAPANSAPIDAPAGQNNAQNANGQNANGQRTQSTSTAGASSGPHSSQRDETTNYEVDRTIRHTKMNVGDVQRLSVAVVVNYRQLGNGKPLALTADQLKQIENLTREAMGYSDKRGDTLNVVNSQFTASDEAGGELPFWQQQAFIDQLLAAGRWLVVLIVAWLLWRKAVRPQLRRRAEEVKRVQEIQQQNKEVEESVEVRLSKDEQTQQRRANQRLSAEVMSQRIREMSDNDPRVVALVIRQWMSNEL
>NZ_CP012264.1|WP_007670226.1|2659758_2660070_-|flagellar-hook-basal-body-complex-protein-FliE
MAIQGIEGVLQQMQATMQVVRNEAVQTPPSVSFAGELQAALGRISDTQNAARTQAEKFAIGTPGVAMNDVMVDLQKSSISLQMGIQVRNKLVAAYQDIMNMQV
>NZ_CP012264.1|WP_007670225.1|2656464_2659584_+|multidrug-efflux-RND-transporter-permease-subunit
MPHFFIERPVFAWVVALFIALTGLLCIPQLPVAQYPAVAPPGIIISVSYPGASPEVMNSSVVSLLEREISGVDNLLYFESSSDTTGMASITVTFKPGTDIKLAQMDLQNQIKIVESRLPQSVRQNGITVEAANAGFLMMVGLKSPNGQYEEADLSDYFARNVTDELRRVPGVGKVQLFGGEKALRIWLDPMKLHSYGLSVTEVLTAVSQQNVIVSPGRTGDEPAVPGQGVTYPITLKGQLSSVEAFQNITLKSATTGARLTLSDVARVESGLQSYAFGIRENGVPATAAAIQLSPGANAISTASGIRSRLAELSGVLPDGMAFTVPFDTAPFVKLSVIKVVKTFAEAMVLVFLVMLLFLHKIRCTLIPAIVAPVALLGTFTVMYLMGYSINILTMFGMVLAIGIIVDDAIVVVENVERLMEEKGMSARDATHEAMREITPAIIGITLVLTAVFIPMGFTGGSVGVIYRQFGVSMAVSILLSAFLALTLTPALCATVLKPHSAQHVSAFSSWFNARFDRLSAFYASALGVVLKRTGRVMALYAALCLALCAGMSSLPSSFLPDEDQGYFMSSIQLPSDATMQRTLKVVQHFEESIAARQAVESNVMILGFGFSGSGPNSAMAFTTLKDWENREGITAQDEAFHIQSSMESVTDGAVMSLLPPAISDMGTSSGFTYYLQDRGAQGYEALKKAADSLVERAGQHPGLKDVYIDGLPDGTRLVLDVDREKAEAMGVSFEEINQTISVATGSSYVNDYTNHGRVQQVIVQADAPYRMQPAQLLALPVKNRQGEMLPLSAFVTFSWNQAPQQLNRYQGYPAIRITGSAAPGESSGTAMAAMEQLATDLPPGFAGEWAGSSLQEQASASQLPGLIMLSILVVFMVLAALYESWSIPFAVMLVVPLGLLGAVAAEVIANMTNDVFFKVGLITLIGLSAKNAILIIEFARQLRREGASLNEAILTASRQRLRPILMTSLAFTLGVVPLMLARGASDSTQHAIGTGVFGGMISGTLLAIFFVPCFYVVITRFVEHRTKKRAEKRAMSAH
>NZ_CP012264.1|WP_007670260.1|2668856_2669234_+|flagellar-type-III-secretion-system-protein-FliO
MKNQTTVQQPAMPDAGSSLIQVSGALTLIIIFILLFAWMAKRFGFAPKSAGMRGLKLNSSLSLGAREKIVIVEVEDARLVLGVTATSITPLHTLPPAPQTPESEAVPGGEFQNLMKNLLKRSGRK
>NZ_CP012264.1|WP_007670263.1|2669233_2669971_+|flagellar-type-III-secretion-system-pore-protein-FliP
MRRWLSLSFLALGLMAAPAMAQLPGLVSQPVSGGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYSDAYQPFSENKISMEVALDRGSQPLREFMLRQTREADLALFAKLANTQPIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQLLVGSLAQSFYS
>NZ_CP012264.1|WP_004388139.1|2669982_2670252_+|flagellar-biosynthesis-protein-FliQ
MTPESVMMMGTEAMKVALALAAPLLLVALVTGLFISILQAATQINEMTLSFIPKILAVFVVIVAAGPWMLNLLLDYMRTLFSNLPYIIG
>NZ_CP012264.1|WP_007670271.1|2670263_2671052_+|flagellar-type-III-secretion-system-protein-FliR
MLQFTSDQWLHWLTLYFWPLLRVLALISTAPILSERSISIRVKIGLALLITIALAPNIPGSNVPIFSLEGLWLGLQQILIGIAVGFTMQFAFAAIRTAGELIGLQMGLSFATFFDPGSRLNMPVLARFIDMLAMLLFLTLNGHLWLISILADTFHTLPISGEAINSNVFMALTRAASLIFVNGVMLALPLITLLLSLNLALGLLNRMAPQLTVFAIGFPLTLSIGMIVMAALMPLIAPFCEHLFAEIFHLLTDIVSEIPAKG
>NZ_CP012264.1|WP_032984275.1|2671400_2672024_+|transcriptional-regulator-RcsA
MSTIIMDLCSYTRLGLTDYLSSRGVRKRQIYHADSVSNLEQACQVRKPHVVFINEDCFIHDPQSSQHIKHIINQHPGTLFIVFMAIANIHFDEYLRVRKNLLISSKSIKPESLDAILGDYLTKDIQCIGKISLPTLSLSRTESSMLRMWMSGQDTIQISDQMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTNGIFVNMR
>NZ_CP012264.1|WP_071884321.1|2672193_2672715_-|protein-DsrB
MVHLAWPRIADIEFKLLAQFTTRLWLARIRRRRGDGVWYRLLVFTDDLDGAKQGVNIRLRRIGRWVFRFHGIHLWLPLALSIVTRRRVTTLGGASKADLFYTGSIVIRGAVMNVNDRVTVKTDGGPRRPGVVLAVEPFNEGTMYLVSLEEYPLGIWFFNEKDHPDGVFVEKVE
>NZ_CP012264.1|WP_007670282.1|2673021_2673837_+|mannosyl-3-phosphoglycerate-phosphatase-related-protein
MAHLNDDLLVITDLDGTLLDPNTHEWTPAQAWLERLIEHDVPVILSSSKTAAEIIALQAALGLEGQPFIAENGAIVQLDATWQDNPDFPRLLNGMPHDEILEIINRLRHEQGYKLFCFSDVDEKTIAEWTGLSPKLAAMATLLEASETVIWRDSDENLARFSASLEALGLMLIEGGRFWHVLDVRGGKGQAANWLKEQYRKREGKLRTTLGLGDGPDDASLLDNVDFAVVVKGLSRQGVMLKNDDPQRVYRTHASGPAGFSEGLDHFLGKV
>NZ_CP012264.1|WP_007670285.1|2673840_2675511_-|cellulose-biosynthesis-regulator-YedQ
MPDKILISRWRTKHPIRVVNLCFCAVFIFSTLLTWREGVILQEAFISSQRNQLDTIATAMDRNLQYSVDKLLFYRAGMRYAMHNLLAGPETDNAIAAFQANRAKSAWSLPTERDLALPIKGVSDKFIAQSTLLERDEARLPNELNATLALGHMLSIADSRGERPEMRTFYVSRAGFYLTSLPFFGNESVPEQYYQQVSSRWFLSQSLRNNPARGVRWLHGADLSMPSGQRVTASIPLDDEGRWFGVLAMDFPIRAMRDFLKNALSNDDAGGEILLFDRQLSLIATTSSGIDPALRFSAQDKAILSRQMERGNAGDARMDTRFIAWAKLDYFDGVLVKVTTFSQSAEGKFGKVAMVLGLLWLLFTAMLFISWRVIVGMVRNMLTMQRSLKWRAWYDTLTRLFNRGAFFERARLAAKACNEQQQPFSVIQLDLDHFKSINDRFGHQAGDKVLTWAAGMLSRTLRSDDVAGRVGGEEFCIILPGTASEDARQVAERIRQRINSQEILVRPDTTIRISVSVGVSEAQRDGDYDFEHLQSIADHRLYLAKQGGRNQVCHEG
>NZ_CP012264.1|WP_007670288.1|2675712_2675895_-|DUF2158-domain-containing-protein
MVFLVSDEVQRKNSGQRMVVTGYSSGMVECRWYDGYGVQREAFREDELLPGERQPREARR
>NZ_CP012264.1|WP_007670293.1|2675984_2676899_-|DUF808-family-protein
MAGSSLLTLLDDIATLLDDVSMMGKVAAKKTAGVLGDDLSLNAQQVTGVRANRELPVVWAVAKGSLLNKLILVPLALIISAFAPWGITPLLMVGGAFLCFEGVEKVLHSLHARKHKETPEQRQQRLDAIAKQDPKVYERDKVKGAVRTDFILSAEIVAITLGIVAEEPLLSQVLVLSGIAILVTFGVYGIVGVIVKLDDMGYWLAEKRSAIARGVGKGLLVAAPWLMKALTILGTIAMFLVGGGIVVHGVTPLHHAIEHWAQGLGGIGAAVMPTVLNMVLGFIIGAVVLGVVTLIGRLRGKAAH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012264_1	1.2\|838800\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838800-838831	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	112256-112287	6	0.812
NZ_CP012264_1	1.2\|838800\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838800-838831	32	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	340760-340791	6	0.812
NZ_CP012264_1	1.2\|838800\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838800-838831	32	NZ_CP050099	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence	146945-146976	6	0.812
NZ_CP012264_1	1.2\|838800\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838800-838831	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	683986-684017	6	0.812
NZ_CP012264_1	1.2\|838800\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838800-838831	32	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	146940-146971	6	0.812
NZ_CP012264_1	1.2\|838800\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838800-838831	32	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	800816-800847	6	0.812
NZ_CP012264_1	1.2\|838800\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838800-838831	32	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	899170-899201	6	0.812
NZ_CP012264_1	1.2\|838800\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838800-838831	32	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	207736-207767	6	0.812
NZ_CP012264_1	1.2\|838800\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838800-838831	32	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	263145-263176	6	0.812
NZ_CP012264_1	1.2\|838800\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838800-838831	32	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	1018842-1018873	6	0.812
NZ_CP012264_1	1.3\|838860\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838860-838891	32	NC_019307	Streptomyces sp. W75 plasmid pCQ4, complete sequence	1661-1692	8	0.75
NZ_CP012264_1	1.1\|838740\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838740-838771	32	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	147379-147410	10	0.688
NZ_CP012264_1	1.2\|838800\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838800-838831	32	NZ_CP013632	Rhizobium sp. N324 plasmid pRspN324b, complete sequence	127896-127927	10	0.688
NZ_CP012264_1	1.2\|838800\|32\|NZ_CP012264\|CRISPRCasFinder,CRT	838800-838831	32	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	37711-37742	10	0.688

1. spacer 1.2|838800|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 6, identity: 0.812

aacgacgtgcggctgatgcgcacgct-tgacgg	CRISPR spacer
atcgacgtgccgctgctgcgcacgctgttgcg-	Protospacer
* ******** **** ********** * .**

2. spacer 1.2|838800|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 6, identity: 0.812

aacgacgtgcggctgatgcgcacgct--tgacgg	CRISPR spacer
atggatgtgcgtctgatgcgcacgctcctgac--	Protospacer
*  **.***** **************  ****

3. spacer 1.2|838800|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NZ_CP050099 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence) position: , mismatch: 6, identity: 0.812

aacgacgtgcggctgatgcgcacgct--tgacgg	CRISPR spacer
atggatgtgcgtctgatgcgcacgctcctgac--	Protospacer
*  **.***** **************  ****

4. spacer 1.2|838800|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 6, identity: 0.812

aacgacgtgcggctgatgcgcacgct--tgacgg	CRISPR spacer
atggatgtgcgtctgatgcgcacgctcctgac--	Protospacer
*  **.***** **************  ****

5. spacer 1.2|838800|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 6, identity: 0.812

aacgacgtgcggctgatgcgcacgct--tgacgg	CRISPR spacer
atggatgtgcgtctgatgcgcacgctcctgac--	Protospacer
*  **.***** **************  ****

6. spacer 1.2|838800|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 6, identity: 0.812

aacgacgtgcggctgatgcgcacgct--tgacgg	CRISPR spacer
atggatgtgcgtctgatgcgcacgctcctgac--	Protospacer
*  **.***** **************  ****

7. spacer 1.2|838800|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

aacgacgtgcggctgatgcgcacgct--tgacgg	CRISPR spacer
atggatgtgcgtctgatgcgcacgctcctgac--	Protospacer
*  **.***** **************  ****

8. spacer 1.2|838800|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 6, identity: 0.812

aacgacgtgcggctgatgcgcacgct--tgacgg	CRISPR spacer
atggatgtgcgtctgatgcgcacgctcctgac--	Protospacer
*  **.***** **************  ****

9. spacer 1.2|838800|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 6, identity: 0.812

aacgacgtgcggctgatgcgcacgct--tgacgg	CRISPR spacer
atggatgtgcgtctgatgcgcacgctcctgac--	Protospacer
*  **.***** **************  ****

10. spacer 1.2|838800|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 6, identity: 0.812

aacgacgtgcggctgatgcgcacgct--tgacgg	CRISPR spacer
atggatgtgcgtctgatgcgcacgctcctgac--	Protospacer
*  **.***** **************  ****

11. spacer 1.3|838860|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NC_019307 (Streptomyces sp. W75 plasmid pCQ4, complete sequence) position: , mismatch: 8, identity: 0.75

gcggaaatggggagggtgagcgttggccggtc	CRISPR spacer
tgggtttcggggagggtgagcgtgggcccgtc	Protospacer
  **   .*************** **** ***

12. spacer 1.1|838740|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gcgaggcgatacgaatcggtcgcgcaaaaggt	CRISPR spacer
cccgggcgatgcgaatcggtggcgcaaggtcg	Protospacer
 * .******.********* ******..

13. spacer 1.2|838800|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NZ_CP013632 (Rhizobium sp. N324 plasmid pRspN324b, complete sequence) position: , mismatch: 10, identity: 0.688

aacgacgtgcggctgatgcgcacgcttgacgg	CRISPR spacer
cacgacgtgccgctgacgcgcacgaccaggtg	Protospacer
 ********* *****.******* ....  *

14. spacer 1.2|838800|32|NZ_CP012264|CRISPRCasFinder,CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

aacgacgtgcggctgatgcgcacgcttgacgg	CRISPR spacer
aacgacgtgaagctgatgcgcacagccctgga	Protospacer
********* .************. ..   *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1838351 : 1848550

Tupanvirus(14.29%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007676367.1\|1838351_1840280_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.9e-131	37.6
WP_012905609.1\|1840283_1840826_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.1e-14	32.3
WP_001124225.1\|1840923_1841121_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_000124849.1\|1841168_1841525_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_106120997.1\|1841648_1841693_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_007676376.1\|1841910_1842894_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	6.4e-34	42.6
WP_007676379.1\|1842909_1845297_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.1e-05	26.0
WP_007676383.1\|1845301_1845601_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_032984629.1\|1845678_1846701_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_007676387.1\|1846710_1847262_+	glutathione peroxidase	NA	NA	NA	NA
WP_032984630.1\|1847273_1848008_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	1.6e-08	28.0
WP_007676389.1\|1848085_1848550_+	lipoprotein nlpC precursor	S5MM68	Bacillus_phage	6.1e-11	36.0

DBSCAN-SWA_2

2673840 : 2682851

Burkholderia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007670285.1\|2673840_2675511_-	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	3.0e-23	37.0
WP_007670288.1\|2675712_2675895_-	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_007670293.1\|2675984_2676899_-	DUF808 family protein	NA	NA	NA	NA
WP_007670297.1\|2677077_2677989_+	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_007670299.1\|2677992_2678490_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	6.1e-33	47.6
WP_007670304.1\|2678473_2679907_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	5.8e-100	53.8
WP_007670307.1\|2679967_2680666_-	phosphohydrolase	S4W232	Pandoravirus	1.4e-06	25.8
WP_007670309.1\|2681332_2682457_+	porin OmpC	Q1MVN1	Enterobacteria_phage	4.1e-101	54.2
WP_007670310.1\|2682611_2682851_+	DinI family protein	K7PKR6	Enterobacteria_phage	7.7e-34	91.1

DBSCAN-SWA_3

2982006 : 3066992

Cronobacter_phage(34.62%)

transposase,portal,integrase,head,capsid,holin,lysis,tail,terminase,tRNA,plate,protease

attL 3014067:3014084|attR 3044786:3044803

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007665760.1\|2982006_2982819_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_007665763.1\|2982818_2983832_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_007665764.1\|2983900_2985037_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	1.3e-17	27.3
WP_032984006.1\|2985159_2986164_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_007665769.1\|2986213_2988988_-\|protease	autotransporter serine protease	NA	NA	NA	NA
WP_053531962.1\|2989541_2990759_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_007665777.1\|2990915_2992931_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_053531963.1\|2993099_2994656_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-14	22.6
WP_007665783.1\|2994697_2994976_-	YfcL family protein	NA	NA	NA	NA
WP_007665785.1\|2995004_2995550_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_007665788.1\|2995549_2996347_-	TSUP family transporter	NA	NA	NA	NA
WP_007665791.1\|2996368_2997193_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_007665793.1\|2997197_2998283_-	chorismate synthase	A0A291AU41	Pandoravirus	4.5e-89	47.7
WP_032984010.1\|2998349_2999282_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_032983996.1\|2999443_2999995_+	endonuclease SmrB	NA	NA	NA	NA
WP_032984012.1\|3000092_3000581_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_007665798.1\|3000786_3002940_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_007665800.1\|3002939_3004250_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_007665802.1\|3004418_3004703_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_053532119.1\|3005061_3006423_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_007665806.1\|3006553_3007309_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_007665808.1\|3007332_3008532_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_007665809.1\|3008528_3008990_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_007665810.1\|3008986_3009544_-	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
WP_053531964.1\|3009540_3011490_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_007665812.1\|3011486_3011966_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_007665813.1\|3011962_3012157_-	heme exporter protein CcmD	NA	NA	NA	NA
WP_053531965.1\|3012141_3012894_-	heme ABC transporter permease	NA	NA	NA	NA
WP_053531966.1\|3012937_3013597_-	heme exporter protein CcmB	NA	NA	NA	NA
WP_007665818.1\|3013593_3014211_-	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	NA	NA	NA
3014067:3014084	attL	NA	NA	NA	NA
WP_007665820.1\|3014408_3015359_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.9e-128	80.3
WP_007665822.1\|3015687_3016875_+\|integrase	tyrosine-type recombinase/integrase	A5VW56	Enterobacteria_phage	5.0e-166	74.3
WP_053531967.1\|3017639_3018599_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_085960958.1\|3018938_3020058_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.2e-49	40.8
WP_007668750.1\|3020311_3021964_+	methyl-accepting chemotaxis protein I	NA	NA	NA	NA
WP_053531968.1\|3022156_3022468_-	hypothetical protein	NA	NA	NA	NA
WP_032984170.1\|3022628_3023069_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	3.2e-17	36.6
WP_007668753.1\|3023074_3024298_-\|tail	phage tail fiber protein	Q8W613	Enterobacteria_phage	3.5e-29	34.2
WP_007668756.1\|3024354_3024927_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.0e-59	60.0
WP_007668759.1\|3024917_3026321_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	8.9e-122	60.8
WP_007668762.1\|3026313_3026730_-	phage GP46 family protein	A0A192Y6D0	Salmonella_phage	2.6e-45	63.8
WP_007668765.1\|3026733_3027318_-\|plate	phage baseplate assembly protein	Q8HAB9	Salmonella_phage	1.3e-34	47.8
WP_053531969.1\|3027317_3028382_-\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	8.8e-130	65.4
WP_007668770.1\|3028378_3029698_-	DNA circularization N-terminal domain-containing protein	A0A192Y5U9	Salmonella_phage	1.4e-153	62.8
WP_007668773.1\|3029733_3031647_-\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	7.8e-185	57.7
WP_007668776.1\|3031734_3032061_-\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	3.4e-32	64.8
WP_007668785.1\|3032057_3032414_-\|tail	phage tail tube protein	A0A192Y8K0	Salmonella_phage	1.1e-49	77.1
WP_007668788.1\|3032406_3034248_-\|tail	bacteriophage tail sheath protein	Q8W623	Enterobacteria_phage	7.0e-167	52.6
WP_071603679.1\|3034248_3034404_-	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	2.7e-11	64.6
WP_007668790.1\|3034409_3034970_-	hypothetical protein	Q8HAC7	Salmonella_phage	2.9e-55	56.5
WP_007668791.1\|3034966_3035485_-	hypothetical protein	A0A192Y6D2	Salmonella_phage	5.7e-66	72.2
WP_032984172.1\|3035477_3035873_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	8.6e-30	54.5
WP_007668792.1\|3035869_3036187_-\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	3.1e-30	59.8
WP_007668793.1\|3036221_3036488_-	Ig domain-containing protein	X4YE12	Lactococcus_phage	1.4e-07	51.2
WP_053531970.1\|3036493_3037714_-\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	1.0e-142	64.2
WP_007668798.1\|3037790_3038414_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	9.3e-79	82.7
WP_007668801.1\|3038406_3039648_-\|portal	phage portal protein	A0A1W6JP33	Morganella_phage	1.2e-175	72.0
WP_007668812.1\|3039793_3041521_-\|terminase	terminase large subunit	Q8W631	Enterobacteria_phage	5.5e-206	60.5
WP_015386663.1\|3041524_3041953_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	4.6e-29	57.5
WP_032984173.1\|3042118_3042478_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	2.5e-36	63.5
WP_007668816.1\|3043703_3044156_-\|lysis	lysis protein	I6PDF9	Cronobacter_phage	8.8e-47	70.7
WP_007668818.1\|3044152_3044593_-	lysozyme	A0A0M4R365	Salmonella_phage	1.4e-52	71.1
WP_007668821.1\|3044579_3044858_-\|holin	phage holin family protein	NA	NA	NA	NA
3044786:3044803	attR	NA	NA	NA	NA
WP_007668824.1\|3044854_3045241_-	exported phage-related protein	NA	NA	NA	NA
WP_032984175.1\|3045407_3046151_-	protein phosphatase	I6PCV8	Cronobacter_phage	1.3e-50	43.9
WP_053531971.1\|3046147_3046912_-	serine/threonine protein kinase	I6PD73	Cronobacter_phage	1.7e-45	39.8
WP_032984177.1\|3047051_3047756_-	antiterminator	I6PDF8	Cronobacter_phage	2.2e-116	89.7
WP_007668831.1\|3047752_3048115_-	RusA family crossover junction endodeoxyribonuclease	I6PBN1	Cronobacter_phage	6.0e-62	97.5
WP_032984187.1\|3048111_3048399_-	DUF1364 domain-containing protein	I6PDJ4	Cronobacter_phage	1.1e-47	93.7
WP_007668838.1\|3048401_3048602_-	hypothetical protein	I6PCV7	Cronobacter_phage	1.6e-29	90.9
WP_007668841.1\|3048605_3049061_-	hypothetical protein	I6PD71	Cronobacter_phage	1.0e-79	92.7
WP_007668845.1\|3049816_3050125_-	hypothetical protein	I6PDF7	Cronobacter_phage	1.4e-51	100.0
WP_007668846.1\|3050137_3050860_-	DNA replication protein	I6PBN0	Cronobacter_phage	4.0e-134	99.6
WP_032984189.1\|3050856_3051612_-	replication protein	I6PDJ3	Cronobacter_phage	1.8e-124	90.3
WP_014728209.1\|3051731_3052064_-	hypothetical protein	I6PCV6	Cronobacter_phage	1.2e-53	100.0
WP_032984179.1\|3052142_3052343_-	hypothetical protein	Q5G8T3	Enterobacteria_phage	2.2e-10	54.4
WP_014728208.1\|3052417_3052822_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	1.4e-67	100.0
WP_007668854.1\|3052996_3053149_+	DUF1391 family protein	M4QQ57	Salicola_phage	3.5e-08	59.6
WP_007668857.1\|3053463_3053670_+	hypothetical protein	I6PBM9	Cronobacter_phage	5.6e-33	97.1
WP_007668860.1\|3053767_3054058_+	hypothetical protein	I6PDJ2	Cronobacter_phage	5.9e-44	92.7
WP_007668863.1\|3054057_3055158_+	AAA family ATPase	I6PCV5	Cronobacter_phage	4.6e-214	99.2
WP_007668866.1\|3055154_3055463_+	hypothetical protein	I6PD68	Cronobacter_phage	1.3e-49	97.1
WP_007668868.1\|3055470_3056115_+	adenine methylase	I6PDF5	Cronobacter_phage	1.4e-117	94.4
WP_053531972.1\|3056190_3056391_+	AlpA family phage regulatory protein	K7P7V0	Enterobacteria_phage	2.4e-20	68.2
WP_007668876.1\|3057371_3057713_-	DUF3944 domain-containing protein	NA	NA	NA	NA
WP_032984180.1\|3057831_3058320_-	hypothetical protein	NA	NA	NA	NA
WP_050555010.1\|3058824_3059298_-	hypothetical protein	NA	NA	NA	NA
WP_129232786.1\|3059300_3061265_-	DUF3289 family protein	NA	NA	NA	NA
WP_053531974.1\|3061315_3063613_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_007672818.1\|3063617_3064142_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_032984415.1\|3064176_3065259_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_032984414.1\|3065222_3066992_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_4

3626652 : 3685322

Erwinia_phage(33.33%)

portal,holin,head,capsid,integrase,lysis,tail,terminase,tRNA,plate

attL 3653512:3653529|attR 3692954:3692971

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007669397.1\|3626652_3627666_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.0e-107	59.2
WP_001144069.1\|3627914_3628130_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_007669402.1\|3628242_3629988_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	6.4e-77	38.4
WP_053532038.1\|3630225_3632070_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_032984218.1\|3632325_3632748_+	hypothetical protein	NA	NA	NA	NA
WP_007669414.1\|3632795_3633302_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_071884394.1\|3633651_3633870_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	3.0e-32	84.7
WP_007669421.1\|3633936_3635091_-	phage late control D family protein	A0A218M4J7	Erwinia_phage	2.6e-159	75.3
WP_053532039.1\|3635090_3635573_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	3.1e-58	68.2
WP_007669427.1\|3635585_3638057_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	2.4e-215	57.1
WP_071884395.1\|3638049_3638205_-\|tail	GpE family phage tail protein	Q7Y4C9	Escherichia_virus	8.0e-16	74.5
WP_007669430.1\|3638201_3638483_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.1e-28	77.3
WP_007669432.1\|3638543_3639056_-\|tail	phage major tail tube protein	Q37845	Escherichia_phage	1.5e-74	77.3
WP_007669436.1\|3639070_3640258_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	3.7e-193	85.5
WP_007669439.1\|3640457_3641042_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	5.2e-31	42.5
WP_053532040.1\|3641041_3642169_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	7.3e-90	53.2
WP_007669456.1\|3642165_3642777_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	8.2e-88	78.6
WP_007669459.1\|3642769_3643678_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	2.3e-131	78.8
WP_007669462.1\|3643683_3644031_-\|plate	phage baseplate assembly protein	F1BUP4	Erwinia_phage	2.9e-42	74.6
WP_032984219.1\|3644027_3644663_-\|plate	phage baseplate assembly protein V	S4TUB5	Salmonella_phage	1.0e-80	72.7
WP_007669467.1\|3644750_3645851_+	hypothetical protein	NA	NA	NA	NA
WP_007669469.1\|3645869_3646325_-	phage virion morphogenesis protein	O80313	Escherichia_phage	2.8e-48	68.7
WP_007669472.1\|3646317_3646785_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	2.3e-66	77.4
WP_080734929.1\|3646747_3646990_-\|holin	holin	S4TNY4	Salmonella_phage	1.2e-26	72.5
WP_007669477.1\|3646880_3647306_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	5.8e-40	65.7
WP_007669480.1\|3647302_3647812_-	lysozyme	A0A218M4K3	Erwinia_phage	1.1e-69	77.2
WP_007669482.1\|3647795_3648011_-	hypothetical protein	A0A218M4L5	Erwinia_phage	2.8e-11	53.4
WP_007669484.1\|3648001_3648205_-\|tail	tail protein X	M1RZ22	Escherichia_phage	6.6e-26	82.1
WP_007669487.1\|3648201_3648696_-\|head	head completion/stabilization protein	M1SNN6	Escherichia_phage	4.9e-59	76.7
WP_053532041.1\|3648791_3649538_-\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	2.8e-98	80.2
WP_007669492.1\|3649541_3650651_-\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	5.5e-167	82.8
WP_007669495.1\|3650703_3651558_-\|capsid	GPO family capsid scaffolding protein	Q94MB7	Escherichia_virus	4.8e-126	81.0
WP_007669498.1\|3651724_3653494_+\|terminase	terminase ATPase subunit family protein	A0A0M4RE51	Salmonella_phage	1.2e-304	86.1
WP_053532042.1\|3653493_3654528_+\|portal	phage portal protein	M1SV64	Escherichia_phage	3.9e-167	84.1
3653512:3653529	attL	NA	NA	NA	NA
WP_032984221.1\|3654874_3655132_-	hypothetical protein	NA	NA	NA	NA
WP_032984222.1\|3655202_3655913_+	hypothetical protein	NA	NA	NA	NA
WP_032984223.1\|3656295_3657093_-	hypothetical protein	NA	NA	NA	NA
WP_053532043.1\|3657211_3657943_-	hypothetical protein	Q37850	Escherichia_phage	5.1e-121	87.7
WP_032984507.1\|3658025_3658466_-	DinI family protein	A0A218M4I0	Erwinia_phage	8.3e-66	92.7
WP_007674874.1\|3658583_3660803_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	75.5
WP_007674876.1\|3660837_3661062_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	2.3e-24	73.0
WP_007674877.1\|3661061_3661295_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	1.3e-17	64.9
WP_007674879.1\|3661365_3661740_-	hypothetical protein	F1BUS4	Erwinia_phage	1.8e-24	47.2
WP_007674880.1\|3661736_3661928_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	6.0e-13	62.9
WP_032984509.1\|3661936_3662446_-	phage regulatory CII family protein	Q6K1F8	Salmonella_virus	2.1e-73	81.1
WP_032984510.1\|3662476_3662740_-	hypothetical protein	A0A218M4I5	Erwinia_phage	2.2e-37	87.4
WP_032984512.1\|3662870_3663449_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	7.6e-59	57.6
WP_007674882.1\|3663448_3664471_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	8.4e-186	94.3
WP_129232804.1\|3664463_3664931_+	hypothetical protein	NA	NA	NA	NA
WP_007674884.1\|3665918_3666467_+	YtfJ family protein	NA	NA	NA	NA
WP_007674885.1\|3666726_3667632_+	polyprenyl synthetase family protein	A0A1V0SE37	Indivirus	2.3e-09	27.7
WP_007674887.1\|3667677_3668721_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_007674888.1\|3668717_3669989_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_007674890.1\|3669985_3671161_+	lycopene beta-cyclase CrtY	NA	NA	NA	NA
WP_053532044.1\|3671153_3672638_+	phytoene desaturase	NA	NA	NA	NA
WP_007674901.1\|3672627_3673599_+	phytoene/squalene synthase family protein	NA	NA	NA	NA
WP_071884396.1\|3673495_3674029_-	beta-carotene hydroxylase	NA	NA	NA	NA
WP_053532045.1\|3676761_3677820_-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_007674907.1\|3677842_3678583_-	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_007674909.1\|3678579_3679119_-	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA
WP_129232803.1\|3679239_3679452_+	hypothetical protein	NA	NA	NA	NA
WP_053532046.1\|3679466_3681620_+	carbon starvation protein A	NA	NA	NA	NA
WP_007674926.1\|3681750_3681954_+	YbdD/YjiX family protein	NA	NA	NA	NA
WP_032984517.1\|3682949_3683351_-	hypothetical protein	NA	NA	NA	NA
WP_007674931.1\|3683509_3684226_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_007674933.1\|3684276_3684603_-	YggL family protein	NA	NA	NA	NA
WP_007674936.1\|3684602_3685322_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
3692954:3692971	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012264

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection