CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012577	Burkholderia pseudomallei strain 982 chromosome 2, complete sequence	2 crisprs	cas3,csa3,DinG	5	17	5	0
NZ_CP012576	Burkholderia pseudomallei strain 982 chromosome 1, complete sequence	2 crisprs	cas3,DEDDh,csa3,DinG	0	6	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012577_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012577_1

702517-703668

Orphan

Consensus_repeat	Method
CCCGTNGCCGTGCTNNNN	CRT

27 spacers

The CRISPR arrays of NZ_CP012577_1

>merge|NZ_CP012577|1|702517-703668|CRT
CCCGTCGCCGTGCTCGATTCACCCGACGCGGCGGCATCCTGCCCCGTTGCCGTGCTTGATGTGCCCGACGCGGTGGCATCCTGACCCGTTGCCGTGCTGTTGTTCCCCGTCGCTTGCGAGCCTTGGCCTGTCGCCGTGCTCGATTCACCCGACGCGTTAGCATCCTGCCCCGTTGCCGTGCTGTTGCTGCCCGTCGCTTGCGAACCTTGGCCCGTCGCCGTGCTCGATGTGCCCGACGCGGTGGCATCCTGGCCCGTTGCCGTGCTGTTGCTGCCCGTCGCTTGCGAGCCTTGGCCCATCGCCGTGCTCGATTCACCCGACGCGGTGGCATCCTGCCCCGTTGCCGTGCTGTTGCTGCCCGTCGCTTGCGAACCTTGGCCCATCGCCGTGCTCGATTCACCCGACGCGGTGGCATCCTGCCCCGTTGCCGTGCTGTTGCTGCCCGTCGCTTGCGAACCTTGGCCCATCGCCGTGCTCGATTCACCCGACGCGGTGGCATCCTGCCCCGTTGCCGTGCTGTTGTTCCCCGTCGCTTGCGAACCTTGGCCCGTTGCCGTGCTCGATGTGCCCGACGCGGTGGCATCCTGACCCGTTGCCGTGCTGTTGTTCCCCGTCGCTTGCGAACCTTGGCCCGTTGCCGTGCTCGATGTGCCCGACGCGGTGGCATCCTGACCCGTTGCCGTGCTGTTGTCCCCCGTCGCTTGCGAGCCTTGGCCCGTTGCCGTGCTGTTGCTGCCCGTCGCTTGCGAGCCTTGGCCCGTCGCCGTGCTCGATTCACCCGACGCGGTAGCACCCTGGCCCGTTGCCGTGCTGTTGTCCCCCGTCGCTTGCGAACCTTGGCCCGTCGCCGTGCTCGATTCACCCGACGCGGTAGCACCCTGGCCCGTTGCCGTGCTGTTGTCCCCCGTCGCTTGCGAACCTTGGCCCGTCGCCGTGCTCGATTCACCCGACGCGGTGGCATCCTGCCCCGTTGCCGTGCTGTTGCTACCCGTCGCTTGCGAACCTTGGCCCGTCGCCGTGCTCGATGTGCCCGACGCGTTAGCATCCTGACCCGTTGCCGTGCTGTTACTACCCGTCGCATGCGAGCCTTGGCCCGTTGCCGTGCTATGACTGCCCGTCGCCTGCGCACCGTTACCCAGTGCGGTGCTTTGC

>NZ_CP012577|1|1|702517-703668|CRT
CCCGTCGCCGTGCTCGAT	TCACCCGACGCGGCGGCATCCTGC
CCCGTTGCCGTGCTTGAT	GTGCCCGACGCGGTGGCATCCTGA
CCCGTTGCCGTGCTGTTG	TTCCCCGTCGCTTGCGAGCCTTGG
CCTGTCGCCGTGCTCGAT	TCACCCGACGCGTTAGCATCCTGC
CCCGTTGCCGTGCTGTTG	CTGCCCGTCGCTTGCGAACCTTGG
CCCGTCGCCGTGCTCGAT	GTGCCCGACGCGGTGGCATCCTGG
CCCGTTGCCGTGCTGTTG	CTGCCCGTCGCTTGCGAGCCTTGG
CCCATCGCCGTGCTCGAT	TCACCCGACGCGGTGGCATCCTGC
CCCGTTGCCGTGCTGTTG	CTGCCCGTCGCTTGCGAACCTTGG
CCCATCGCCGTGCTCGAT	TCACCCGACGCGGTGGCATCCTGC
CCCGTTGCCGTGCTGTTG	CTGCCCGTCGCTTGCGAACCTTGG
CCCATCGCCGTGCTCGAT	TCACCCGACGCGGTGGCATCCTGC
CCCGTTGCCGTGCTGTTG	TTCCCCGTCGCTTGCGAACCTTGG
CCCGTTGCCGTGCTCGAT	GTGCCCGACGCGGTGGCATCCTGA
CCCGTTGCCGTGCTGTTG	TTCCCCGTCGCTTGCGAACCTTGG
CCCGTTGCCGTGCTCGAT	GTGCCCGACGCGGTGGCATCCTGA
CCCGTTGCCGTGCTGTTG	TCCCCCGTCGCTTGCGAGCCTTGG
CCCGTTGCCGTGCTGTTG	CTGCCCGTCGCTTGCGAGCCTTGG
CCCGTCGCCGTGCTCGAT	TCACCCGACGCGGTAGCACCCTGG
CCCGTTGCCGTGCTGTTG	TCCCCCGTCGCTTGCGAACCTTGG
CCCGTCGCCGTGCTCGAT	TCACCCGACGCGGTAGCACCCTGG
CCCGTTGCCGTGCTGTTG	TCCCCCGTCGCTTGCGAACCTTGG
CCCGTCGCCGTGCTCGAT	TCACCCGACGCGGTGGCATCCTGC
CCCGTTGCCGTGCTGTTG	CTACCCGTCGCTTGCGAACCTTGG
CCCGTCGCCGTGCTCGAT	GTGCCCGACGCGTTAGCATCCTGA
CCCGTTGCCGTGCTGTTA	CTACCCGTCGCATGCGAGCCTTGG
CCCGTTGCCGTGCTATGA	CTGCCCGTCGCCTGCGCACCGTTA
CCCAGTGCGGTGCTTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012577.1\|WP_004547801.1\|707501_707705_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012577.1\|WP_004533867.1\|698361_698907_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP012577.1\|WP_004537437.1\|712783_713068_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012577.1\|WP_004523700.1\|690808_691348_-\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|226047
NZ_CP012577.1\|WP_154220220.1\|704647_705007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012577.1\|WP_004523722.1\|713218_713482_-\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269829
NZ_CP012577.1\|WP_004533804.1\|697559_698297_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NZ_CP012577.1\|WP_004523720.1\|712038_712365_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP012577.1\|WP_004545003.1\|691737_693414_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP012577.1\|WP_076836123.1\|709665_710289_+\|DUF2244-domain-containing-protein	unknown	unknown	gnl\|CDD\|378350
NZ_CP012577.1\|WP_004551161.1\|700307_701795_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226737
NZ_CP012577.1\|WP_076802597.1\|694702_697336_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP012577.1\|WP_076805022.1\|693416_694073_-\|DotU-family-type-IV/VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|378275
NZ_CP012577.1\|WP_080366684.1\|699491_700046_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284781
NZ_CP012577.1\|WP_009956189.1\|705351_706818_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP012577.1\|WP_004523721.1\|712384_712804_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NZ_CP012577.1\|WP_004523716.1\|707959_709555_+\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238833
NZ_CP012577.1\|WP_004531587.1\|710874_711567_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012577.1\|WP_004529637.1\|694137_694710_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP012577.1\|WP_004523708.1\|700056_700272_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP012577.1\|WP_004523721.1\|712384_712804_+\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	1.018e-53
NZ_CP012577.1\|WP_004533867.1\|698361_698907_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	6.50534e-21
NZ_CP012577.1\|WP_004523700.1\|690808_691348_-\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|226047	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	7.24528e-84
NZ_CP012577.1\|WP_004523722.1\|713218_713482_-\|PAAR-domain-containing-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	9.18656e-23
NZ_CP012577.1\|WP_004533804.1\|697559_698297_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	5.27556e-96
NZ_CP012577.1\|WP_004523720.1\|712038_712365_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	5.63925e-18
NZ_CP012577.1\|WP_004545003.1\|691737_693414_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	5.55698e-35
NZ_CP012577.1\|WP_076836123.1\|709665_710289_+\|DUF2244-domain-containing-protein	gnl\|CDD\|378350	pfam10003, DUF2244, Integral membrane protein (DUF2244). This domain, found in various bacterial hypothetical and putative membrane proteins, has no known function.	6.78346e-37
NZ_CP012577.1\|WP_004551161.1\|700307_701795_+\|hypothetical-protein	gnl\|CDD\|226737	COG4287, PqaA, PhoPQ-activated pathogenicity-related protein [General function prediction only].	0
NZ_CP012577.1\|WP_076802597.1\|694702_697336_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP012577.1\|WP_076805022.1\|693416_694073_-\|DotU-family-type-IV/VI-secretion-system-protein	gnl\|CDD\|378275	pfam09850, DotU, Type VI secretion system protein DotU. DotU is a family of Gram-negative bacterial proteins that form part of the membrane-joining complex of the type VI secretion system. DotU binds tightly to IcmF and together they are tethered to the inner membrane at one end and the peptidoglycan layer at the other; they interact with Lip1 which then tethers the peptidoglycan layer to the outer membrane.	1.21569e-28
NZ_CP012577.1\|WP_009956189.1\|705351_706818_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	0.00933113
NZ_CP012577.1\|WP_004523716.1\|707959_709555_+\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238833	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.	0
NZ_CP012577.1\|WP_004529637.1\|694137_694710_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	2.61685e-22
NZ_CP012577.1\|WP_080366684.1\|699491_700046_+\|hypothetical-protein	gnl\|CDD\|284781	pfam07437, YfaZ, YfaZ precursor. This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.	5.17221e-13

>NZ_CP012577.1|WP_004551161.1|700307_701795_+|hypothetical-protein
MRNKVAGAIALSMLSLAYPRAEAAPIAFPCPIDARRDLTDTLACYRQTVENQPLNYTMTGIVQLPGIEQRTYRLVSQSWSPDQLVRPDTWVHEVALYIPQDALPRRALVIANDGTRHPGEGETPRTPNDFLPDTLADIARSTRTAVISVSDVPNQLLSYADDGKPKAEDDSVARSWTLFMQSPHTRGAMPLHVPMAASIWRAMSLAERELTSLGIHRFVVSGISKRAWTTWLALIGDQRVDAIAPFAIDLLSTRAALENMYRSYGGNWPLAFYPYYAEGIDRTLDSPAFGLLMRIEDPLSYLGTRHGSRLAVPKYIVNASGDDFFVPDNSQRYFDKLPGAKALRMVPNSSHSDIRRATLDSLVPFVKRIQHGKALPQVDAAPIETNGQTILRLRTSERPRQLLLWQATNPLARDFRYACGIRYTSTPIAMNGARPQQLVLVPPTNGWRAYFVEATFDDGFVATSQTYILGDGYPSTSPPAVGGSCRTLPGRDTHS
>NZ_CP012577.1|WP_004523708.1|700056_700272_-|hypothetical-protein
MAIVGEPPEELIDRLLRACRPLAPILPIAPMPQAKRRDERRVLQGKTWREMHRALVPFDRRTIQKEKPAAR
>NZ_CP012577.1|WP_080366684.1|699491_700046_+|hypothetical-protein
MSRTESSIFAKRPDWPRFFSKLGLVASSIGVFAFMPNARASDYSIAIGNGYQSVSRTPTGTGFGFLLDATRSGEDAYSIGPGLSFGVRIGAVSLTVAGKALHVRSADGRSGLTTPIGVIAGIPAASRLSLVARAFYTPRAVFSAALGAYTQATACVRWTYKPINLEAGWRYEALKGRNGTRDPR
>NZ_CP012577.1|WP_004533867.1|698361_698907_-|type-1-fimbrial-protein
MKKKVVSFAVATLFGLVAAQSVYAQSIDQGQVKFTGELTANTCTIDAGSKDQIVPLPKVSTSALAAPGDVAGSTAFEIKVSKCAADVKKVAAHFEMENMDPNTRTLKNEATGADAATNVTIQLVNSDGTELPVGSTGSYFDVTGTDDARGATMIYGGQYYALDTTTAGKVESHTLFTLAYE
>NZ_CP012577.1|WP_004533804.1|697559_698297_-|fimbria/pilus-periplasmic-chaperone
MRLWKMCVAVAAACCLASTLSQAAIVITGTRVVYPESSREVNVRLNNVEQSPVLVQAWIDDGNAGASPDEIKVPFVLMPPVFRVEPKKGQTLRVMYTGDDLPKDRESVYWLNVLEIPPKPTVEAEQNLLQLAFRTRIKLFFRPSALEDGNAAQARDQLKWKIVRNEKGVSVLRAENRSPYYISISQATAKSGDKSVQFDPGMVPPFGSKEFVSKHDISTLSTHAEIAYKLLNDYGAEVAGSATAE
>NZ_CP012577.1|WP_076802597.1|694702_697336_-|fimbrial-biogenesis-outer-membrane-usher-protein
MGEAPSGAEPGTRGRQALLVASHASPSAPTTVSFNSRLLMGGGIDLSRFERGNPVVAGIYPVDVTVNGERRGRMDVEFRDVRGGDSAAPCFTRAMLDRLGVEGDIVAKRLDAARDATGAASGQTPTLSASACIGLRDALPDATYTLDSADLTLDLTIPQVDMRKTARGYVDPSRWDNGVNAGLLQYNLSGYASENKFFGNHASSLFLGLQAGANIGAWRVRQRSNLMWANRSAGMSWRSLETYVQRDITALRSQITLGDSYTTGEIFESFGVRGMQLASDDRMLPVSLQSYAPTVRGVADTNARVAVRQRGNVIYEASVPPGPFEFDDLPPTGYGGDLDVTITESDGRTKHFTVPFASVRQLLRPGMQRFNFTVGQYRDALSNGKPWVAQLTYQRGMTNLLTGYAGLLSSTGYASGLIGVALNTPIGAFAFDVTSARTHLPGQGARNGFSSHLSYSKMVPSTGTHFSMAAYRYSTANYYSLADAVTARYGYNAEERAWRNDYRARTRLQLNVNQRIGDRSSAYVSSSLLNYWDGRGRDIQFQAGFSSVFKRVSYTVYAQRSRSSDDRTVTQVGVNLSIPLGSGAYTKRNAFSSLTTSLSRASNGDSSIQANLSGSTAHVVPIDYGVNVSRSVTGDSNFASLGVYGTYRSPFGTYSGNASVDNRARQASFGANGAVVLHRGGVTLSPPLGSAAALVEAKGARGGKLINGQGATIDRFGYAVIPSLMPYRANTVAIDPSELPDDVELANTSEEVVPRNNSIVFVKMETKRGRPVFAATETEDGKPLPMGSELFDVEGKSLGGVGQGGMAFLRGLQGAGNVVAKWGAGASEQCTMPYLVPADQAQAKQSRAIVRIRLRCEPRLSADASQTPHGDGGTRND
>NZ_CP012577.1|WP_004529637.1|694137_694710_-|type-1-fimbrial-protein
MIEMNGLKFRRGAARRWPSIAAAAMFAASAACGAPPSPTVTIKFKGSYNPVTCTVVEGNENKTVHLPTISTSSLANAGETAGATGFDISVLCDGYAGNVLAYFENGPTTNENGNLDVEDPSDGQSASGVQVQLLNGDGSPIKVGDISTMKTVSVEASTPTPIPFFARYYATGKSGAGKVRTYVTFVIQML
>NZ_CP012577.1|WP_076805022.1|693416_694073_-|DotU-family-type-IV/VI-secretion-system-protein
MLLQDTMLHVALLTQGARISRVHDWRARCIALVRQFEQALQDGGYRGGIANELSLAQCVFLDEITMRNLSPEQKEEWLRELLQFRFHSTRDGLSKVRARVDRLCSGHSANAALLEMYSLFHEFGLLGDKQGHALADARVSEARPTPGKKAVETAEVWKDGGAANEAAHGRSWRIVGGLLAFAALMTMWLVIDTRLSHEVEQMEVTSGDEAAIHPASGD
>NZ_CP012577.1|WP_004545003.1|691737_693414_-|OmpA-family-protein
MSRQIRFWLVWGAIPFVVLASLCLPLRMQPEWSHVLTIVLIIAAIVLAIEIFEHSRETAQDRAAEAEIDDHELAVIIVAGPHASSLFNSSGDDTAFRREAGALWLRADSVEQLRDTMMRVKASRGRFPDAAVVPLVSESDDESDMRQAFAKWRTELREALCYPDAAYVLPCYLAVYTCLGFKGADGARPKWTGDAIEIGTRQMNAASKVGELLASIRQQLLRPSPTGSSAQCALGLGVFDWLDATALLSSMTMLANTPPFMLKGLTLADVGRRPIRPGAWTRWLTVRTGLHIRQTKSSMAPLPVPRVAKHAESGIREGWSSARHLVSTRASFVPALVFSTVSTLGIAVAVSGWMNCRMIQRVSNDIADYRSGADEWIGRKRFAQARLEHDRTAIVQTLLDGVPTGFGWGLYRGQELLVKLDTVLDSPRTASIAMQLDTVSLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADSSGSDAANFQLSEARARAIRDWFVDQGVLKTRFIVQGAGDTHPIADNDSPSGRAQNRRVEVLLIPDVASDRKASGTEL
>NZ_CP012577.1|WP_004523700.1|690808_691348_-|type-VI-secretion-system-contractile-sheath-small-subunit
MAISNSSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPAVGDRKFFSIDIDNFDERMKAMKPRVAFSVPNTLSGDGQLMVDITFESMDDFSPAAIAKKVDALSQLLDARTQLANLQTYMDGKSGAENLVSKVLKDPALLSALAKAPKPVAEQAENRESKEKH
>NZ_CP012577.1|WP_154220220.1|704647_705007_+|hypothetical-protein
MMNTPLSTRSTNFNSLVHRLTARLHALVTTRNSSGLLAWKTRDELERLFPAGTPMTHVGWRLGPPHQAVEYPGGCVTWIFLSNGQWLREPGRLLMWSAQTRSLRLTFDREQILTQMQLD
>NZ_CP012577.1|WP_009956189.1|705351_706818_+|hypothetical-protein
MPIRQTHIWIFGFVIAFALAMSGPLTYTFENTFQKTVDIDRKKQGTVEEATAFDARSAEQPSAPDADRMHELPRIDAARSPTDHFDELPIHLAAFGGGEPSPSGPLPPGPLPDTSFTPFPFQHGFDTAIHPGPPISALPESTLARTDAPPRDETPFEPGMPQPSETVDTQLSFYADMVAQAIERTAYDSIALAKLDSDTTAPPDMTPERHDALANMNAPMFYADMLTASIHVPPSNDRTLSVPSLLTHQAIGIAWMELFARELPATATQAAPTRHAVSFAATLQAEPFDLAQWSEPDEAHSDGPPLELDGQRTIAPPYPRAGTLPPGTRPTYTDSPPDTGIVQAAAMLATGFESAGKHAATLRGQPPGADECRMGARAIGLGRSGMERLAIEQFVSSARAAYDCARARIHGRASAFANAPASAQPSNHLDANGDPMRTAFLPRFASEPFQEAFSIPGDTAGIASACAVTDAQTGHRNRMAAANSDWSD
>NZ_CP012577.1|WP_004547801.1|707501_707705_+|hypothetical-protein
MADTPQTGATHAFLSARIASNSSKKTFARRPLGGTRTALSRTGAVNCFTIFRAICCLRRLAARINLG
>NZ_CP012577.1|WP_004523716.1|707959_709555_+|cytochrome-c-oxidase-subunit-I
MSEISTNMPHVRDAAHHAPTGWRRWLFATNHKDIGTLYLLFSIVNLMIGGVMALMIRAELFEPGLQLMRPEFFNQLSTEHGFIMIFGAIMPAFVGLANWMIPLQIGASDMAFARMNNFSFWLLPVSSALLIGSFFVPGGAPAAGWTMYAPLSTQMGPGMDLSIFAIHIAGASSIMGAINIVVTVVNMRAPGLTLMKMPMFAWTWIITSFLLIAIMPVLAGAVTMVLFDRHFGTSFFNASGGGDPVLYQHIFWYFGHPEVYVMILPGFGMISQVIPAFSRKPLFGYASMVYATASIGILSFMVWAHHMFVTGMPVAGQLFFMYATMTIAVPTGVKVFNWVATMWRGSLTFETPMLFSIGFIFVFLIGGLTGVTLAMAPLNVALHGTYYIIAHFHYVMVAASLFSIYAGWYFWVPKWTGYFYDERRGRIHFWGSMISFNVTFFPMHFLGLAGMPRRYADYPAQFTDFNQIATIGAFAFGLMQVYFLFWVALPTYLGKTRRCVDAKPWDGAQGLEWTLPSPAPYHSFETPPAVK
>NZ_CP012577.1|WP_076836123.1|709665_710289_+|DUF2244-domain-containing-protein
MKADARCDTRKHAQRHCTPAFVAHDPRLMTRDVAENRRVWLLKRNCALSPRQSLISMGLLAALTLAIAMPFAIAGAWAVFACAIGEIAAMCGCFLLYARHAVDYDCVALTEQRLEVVQCDGAQLRRYDWNPLWVAVDLDAAHARDPTIRIRHGSETVLVGRHVTLARRRHVAGELNAALAASAGDFGDTDFAPSVRQRQPEPLAAHR
>NZ_CP012577.1|WP_004531587.1|710874_711567_-|hypothetical-protein
MNSQHARFIRPVLGTLCIVSLAALSGCRGDACFGFDGCFDDGGVQTVTLSGTAATGPALASATVNVDCARGSVATLSDGGGHYSVTFDAALPCAITVTSGGTSLHSLAYAGGTFNTTPQTELMLVYLAAQLGTSPARLIGDLPNSSRLQQALENQTNVQAAQTAVVANLQQRYAVMFAVPEFLTTPFFVGQPGVDGDLGALANAGAIDANGMPDALAVSLLQQAGAAHPL
>NZ_CP012577.1|WP_004523720.1|712038_712365_+|thioredoxin-family-protein
MHSSQAYTADAPTRAEVDALAGATVIEFGANWCGICAGAQPAIRDAFSVHADVRHLKIEDGPGRPLGRSFGIKLWPTLVFLRDGTEVARVVRPTHAEQIETIGFAALV
>NZ_CP012577.1|WP_004523721.1|712384_712804_+|YjbQ-family-protein
MQQSIQHITVEARGRGLVEFTPQVRAFVEVQSVSTGLLTVFCRHTSASLLIQENADPSVQRDIERYFAALAPEDDARYEHDTEGADDMPAHLRTALTQVQLSIPVEHGRMVLGTWQGIYLFEHRRAPHRRDVVLHLIGE
>NZ_CP012577.1|WP_004537437.1|712783_713068_-|hypothetical-protein
MSGLRTPPFPAKVDEIGAPRRPVGEERVPAAAHDRALREDVRGHRCRSASQTRPRRTAATDDQEAEGIEPRTPRRVARGAAHAMLAARSLADQM
>NZ_CP012577.1|WP_004523722.1|713218_713482_-|PAAR-domain-containing-protein
MRGVIRIGDSTSHGGRVETGREGSTVMGRAVACVGDRCTCPMNGHEHCVIVEGDEDVRIEGRAVAFDGHRTSCGATLVSSIPTSGRV

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Crispr_ID: NZ_CP012577_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012577_2

1324473-1324565

Orphan

Consensus_repeat	Method
TCGCCGCCGCGCGCGACGACGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012577_2

>merge|NZ_CP012577|2|1324473-1324565|CRISPRCasFinder
TCGCCGCCGCGCGCGACGACGCGCTGAAGGACGCGCTCGCGCAGGCCGCCGCCGAGCGCGAGCGGCTGATCGCCGCCGCGCGCGCCGACGCGC

>NZ_CP012577|2|1|1324473-1324565|CRISPRCasFinder
TCGCCGCCGCGCGCGACGACGCGC	TGAAGGACGCGCTCGCGCAGGCCGCCGCCGAGCGCGAGCGGCTGA
TCGCCGCCGCGCGCGCCGACGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012577.1\|WP_050020039.1\|1316910_1318341_-\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NZ_CP012577.1\|WP_038715478.1\|1323307_1324009_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NZ_CP012577.1\|WP_004524981.1\|1320249_1320507_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012577.1\|WP_004187193.1\|1324005_1324254_+\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067
NZ_CP012577.1\|WP_004529182.1\|1322518_1323010_+\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_CP012577.1\|WP_004524989.1\|1329743_1330253_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012577.1\|WP_004529178.1\|1328080_1329106_+\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP012577.1\|WP_053565681.1\|1315735_1316914_-\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NZ_CP012577.1\|WP_004530244.1\|1332726_1334562_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP012577.1\|WP_004555135.1\|1320478_1322077_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NZ_CP012577.1\|WP_004524990.1\|1330793_1332359_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP012577.1\|WP_004524995.1\|1339059_1340133_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP012577.1\|WP_004188221.1\|1322066_1322522_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NZ_CP012577.1\|WP_004533337.1\|1326997_1327846_+\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NZ_CP012577.1\|WP_004549747.1\|1323002_1323311_+\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NZ_CP012577.1\|WP_009950383.1\|1318324_1320118_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213656
NZ_CP012577.1\|WP_004530245.1\|1334711_1335836_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP012577.1\|WP_038755607.1\|1325000_1327001_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NZ_CP012577.1\|WP_009972310.1\|1329182_1329686_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012577.1\|WP_050857215.1\|1335838_1339063_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054

Protein	Function_ID	Function_description	E-value
NZ_CP012577.1\|WP_050020039.1\|1316910_1318341_-\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NZ_CP012577.1\|WP_038715478.1\|1323307_1324009_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	8.52651e-122
NZ_CP012577.1\|WP_004524995.1\|1339059_1340133_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.83012e-39
NZ_CP012577.1\|WP_004187193.1\|1324005_1324254_+\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37
NZ_CP012577.1\|WP_004529182.1\|1322518_1323010_+\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	6.86601e-17
NZ_CP012577.1\|WP_004529178.1\|1328080_1329106_+\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP012577.1\|WP_004533337.1\|1326997_1327846_+\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	4.46992e-34
NZ_CP012577.1\|WP_004530244.1\|1332726_1334562_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	6.14575e-132
NZ_CP012577.1\|WP_004555135.1\|1320478_1322077_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NZ_CP012577.1\|WP_004524990.1\|1330793_1332359_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NZ_CP012577.1\|WP_004188221.1\|1322066_1322522_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NZ_CP012577.1\|WP_053565681.1\|1315735_1316914_-\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NZ_CP012577.1\|WP_004549747.1\|1323002_1323311_+\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	3.91378e-10
NZ_CP012577.1\|WP_009950383.1\|1318324_1320118_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.63529e-179
NZ_CP012577.1\|WP_004530245.1\|1334711_1335836_-\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	4.38049e-26
NZ_CP012577.1\|WP_038755607.1\|1325000_1327001_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NZ_CP012577.1\|WP_050857215.1\|1335838_1339063_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.44188e-92

>NZ_CP012577.1|WP_004187193.1|1324005_1324254_+|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NZ_CP012577.1|WP_038715478.1|1323307_1324009_+|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGARARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NZ_CP012577.1|WP_004549747.1|1323002_1323311_+|membrane-protein
MIEMWETARASFDGIAAAIGLALGFAAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NZ_CP012577.1|WP_004529182.1|1322518_1323010_+|AtpZ/AtpI-family-protein
MMKRRPPEVKREARDDAARGDARHAGAGAAPDDPRGAARRDPPPGSRAARGGATHPAARAAEPAAPKPAADRVERAAHTAAARAARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMKAQQHGDRDD
>NZ_CP012577.1|WP_004188221.1|1322066_1322522_+|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NZ_CP012577.1|WP_004555135.1|1320478_1322077_+|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDARDEGAGRVVAVRGAVIDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAAASVAGPGTTSGTTSDPASGSAEPQGARHGR
>NZ_CP012577.1|WP_004524981.1|1320249_1320507_-|hypothetical-protein
MPFVACGSATVAPVWLVRRWLHHNGARRPPADLGQETGNRQTKRGIAQSETIDASASGADTVRAASIVDSNQIPQTYAWLQWPCQ
>NZ_CP012577.1|WP_009950383.1|1318324_1320118_-|alpha/beta-fold-hydrolase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASITLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFVLTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGARTLGDAPGTYVFQK
>NZ_CP012577.1|WP_050020039.1|1316910_1318341_-|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MCSRNKECRVDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NZ_CP012577.1|WP_053565681.1|1315735_1316914_-|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHVRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDTGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA
>NZ_CP012577.1|WP_038755607.1|1325000_1327001_+|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIAFVSGLEDTMLNEVLRFEGGVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVGELIERIAADAAHRATAGMPAEDAAGDIGGAFGGEQARGDADRDADHGANREVSPEASREVSREVSREVSHEADRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPRPDARGDAARTAPSPQGGADANVNADANVDAEAEARHKR
>NZ_CP012577.1|WP_004533337.1|1326997_1327846_+|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVAAARAHEAQQRLPGIRASAATVGAAIGDALSAGARSGDTAAGARAAPRARLVVVLCSEQGFVGAYNAQLIEHATRPEPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAHLAKRGAQPVSIVHAMPGGAARLEVTERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NZ_CP012577.1|WP_004529178.1|1328080_1329106_+|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGAAFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NZ_CP012577.1|WP_009972310.1|1329182_1329686_+|hypothetical-protein
MRGAGRASPSRARRYENVSKEPNTHREAGAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDMHLGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPPPVGDDMQDLIH
>NZ_CP012577.1|WP_004524989.1|1329743_1330253_-|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIAGGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NZ_CP012577.1|WP_004524990.1|1330793_1332359_+|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NZ_CP012577.1|WP_004530244.1|1332726_1334562_-|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGASGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRARGARHAQADPRAKTAAARVQR
>NZ_CP012577.1|WP_004530245.1|1334711_1335836_-|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMDAGDFTFVLDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NZ_CP012577.1|WP_050857215.1|1335838_1339063_-|ATP-binding-cassette-domain-containing-protein
MSAPSVVRFSDVSLRYGKTVALERITLEIPAGLTIGLIGPDGVGKSSLLALAAGARALQTGAVDALGGDMRSRRHRERVCRRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDADERRRRIDALTRSTGLFAFLSRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLIARIRSERPAMSVIVATAYMDEAQRFDWLIAMDAGRVLATGAPAELLARTGCDSLEAAFIALLPEDERRGHKPVTLEPLRADAQTGTAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGTAQLFGKTVDPKDINTRRRVGYMSQAFSLYSELTVRQNLVLHARLFGVPAAEIDARVDEMARRFGLADIYDMLPDSLPLGMRQRLSLAVAMVHKPELLILDEPTSGVDPVARDSFWQLMIDLARRDRVTIFISTHFMNEAQRCDRISLMHAGRVLASDAPAALVRARGAATLEEAFIGYLVDASAQEAQGGAGGRPGAGERAAGESLAGRGAATDGDADGAHARPAAYANGAAQHRAPDADAAGTDVAAETGARDDARTAHAAGHSAGNDVRATVGSEVGSEVGSDVGLAASAESGSERGVAHGAERAREPAADAGAAIDVEPGASAESATAAVAPARHAESAATSPRAGNAPAGTPFAAAPPSHAAPAEPPHRAFSAQRALSYMWREMLELRRDPVRATLALIGSLVLMCVIGIGISLDVEDLTYAVLDRDQTELSHDYALNLSGSRYFVERPPIADYAALDRRMRDGELSLAIEIPPNFARDVERGAPAQIGMWIDGAMPQRAETIRGYAIGMHTMWLADKARHRLGVTLAPRAEVVTRYRYNPDVKSLPAMIPAVMPLLLLMLPAMLTALAVVRERELGSILNLYVTPVTRTEFLIGKQVPYVVLAMLNFLLMTMLARIAFDVPVKGSFMTLLLAVLIFNVVATGIGLLASTFTRSQVAAIVMTIIGTMIPTVQFAGLLTPLSSLEGTGRLIGLVYPATYMLSISRGVFNKALSLHDLYSQFWPLAASVPVILGATILLLKKQER
>NZ_CP012577.1|WP_004524995.1|1339059_1340133_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MIQVTRKQIVAAAAVVVVALGAYYGWTLLRHQGPGDGFASGNGRIEATEIDVATKLPGRIDAILVDEGDFVKAGQPLANMQIQVLRAQYDEATAQRQRALNTAAGVQSQVAQRKSDKAAAQAMVVLRESELDAAERRLARSQTLSREGASSLQELDDDRARARSAQAAVSAAAAQVAAAQAAIEATEAQLVAAHSAVTAADATVARVQADIDDSQLASPRDGRVQYRVAQPGEVLPAGGKVLNLVDLSDVYMTFFLPETVVGRVALGADARIILDAAPNYVIPATVSFVSSTAQFTPKTVETANERQKLMFRVKARIDRELLQKHLKLVKTGLPGVAWVRVDPSKPWPAQLMVKVPQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP012577_1	1.7\|702787\|24\|NZ_CP012577\|CRT	702787-702810	24	NZ_CP012577.1	702493-702516	1	0.958
NZ_CP012577_1	1.18\|703249\|24\|NZ_CP012577\|CRT	703249-703272	24	NZ_CP012577.1	702493-702516	1	0.958
NZ_CP012577_1	1.5\|702703\|24\|NZ_CP012577\|CRT	702703-702726	24	NZ_CP012577.1	702493-702516	2	0.917
NZ_CP012577_1	1.9\|702871\|24\|NZ_CP012577\|CRT	702871-702894	24	NZ_CP012577.1	702493-702516	2	0.917
NZ_CP012577_1	1.11\|702955\|24\|NZ_CP012577\|CRT	702955-702978	24	NZ_CP012577.1	702493-702516	2	0.917

1. spacer 1.7|702787|24|NZ_CP012577|CRT matches to position: 702493-702516, mismatch: 1, identity: 0.958

ctgcccgtcgcttgcgagccttgg	CRISPR spacer
ctgcccgccgcttgcgagccttgg	Protospacer
*******.****************

2. spacer 1.18|703249|24|NZ_CP012577|CRT matches to position: 702493-702516, mismatch: 1, identity: 0.958

ctgcccgtcgcttgcgagccttgg	CRISPR spacer
ctgcccgccgcttgcgagccttgg	Protospacer
*******.****************

3. spacer 1.5|702703|24|NZ_CP012577|CRT matches to position: 702493-702516, mismatch: 2, identity: 0.917

ctgcccgtcgcttgcgaaccttgg	CRISPR spacer
ctgcccgccgcttgcgagccttgg	Protospacer
*******.*********.******

4. spacer 1.9|702871|24|NZ_CP012577|CRT matches to position: 702493-702516, mismatch: 2, identity: 0.917

ctgcccgtcgcttgcgaaccttgg	CRISPR spacer
ctgcccgccgcttgcgagccttgg	Protospacer
*******.*********.******

5. spacer 1.11|702955|24|NZ_CP012577|CRT matches to position: 702493-702516, mismatch: 2, identity: 0.917

ctgcccgtcgcttgcgaaccttgg	CRISPR spacer
ctgcccgccgcttgcgagccttgg	Protospacer
*******.*********.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012577_1	1.27\|703627\|24\|NZ_CP012577\|CRT	703627-703650	24	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3366341-3366364	2	0.917
NZ_CP012577_1	1.1\|702535\|24\|NZ_CP012577\|CRT	702535-702558	24	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	389417-389440	3	0.875
NZ_CP012577_1	1.1\|702535\|24\|NZ_CP012577\|CRT	702535-702558	24	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	178526-178549	3	0.875
NZ_CP012577_1	1.1\|702535\|24\|NZ_CP012577\|CRT	702535-702558	24	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	350635-350658	3	0.875
NZ_CP012577_1	1.1\|702535\|24\|NZ_CP012577\|CRT	702535-702558	24	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	220420-220443	3	0.875
NZ_CP012577_1	1.1\|702535\|24\|NZ_CP012577\|CRT	702535-702558	24	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	2102825-2102848	3	0.875
NZ_CP012577_1	1.27\|703627\|24\|NZ_CP012577\|CRT	703627-703650	24	NZ_CP054618	Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence	194448-194471	3	0.875
NZ_CP012577_1	1.27\|703627\|24\|NZ_CP012577\|CRT	703627-703650	24	NZ_CP025552	Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence	169321-169344	3	0.875
NZ_CP012577_1	1.6\|702745\|24\|NZ_CP012577\|CRT	702745-702768	24	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	362719-362742	4	0.833
NZ_CP012577_1	1.8\|702829\|24\|NZ_CP012577\|CRT	702829-702852	24	NC_012725	Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence	15063-15086	4	0.833
NZ_CP012577_1	1.8\|702829\|24\|NZ_CP012577\|CRT	702829-702852	24	NZ_CP035902	Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence	58203-58226	4	0.833
NZ_CP012577_1	1.10\|702913\|24\|NZ_CP012577\|CRT	702913-702936	24	NC_012725	Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence	15063-15086	4	0.833
NZ_CP012577_1	1.10\|702913\|24\|NZ_CP012577\|CRT	702913-702936	24	NZ_CP035902	Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence	58203-58226	4	0.833
NZ_CP012577_1	1.12\|702997\|24\|NZ_CP012577\|CRT	702997-703020	24	NC_012725	Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence	15063-15086	4	0.833
NZ_CP012577_1	1.12\|702997\|24\|NZ_CP012577\|CRT	702997-703020	24	NZ_CP035902	Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence	58203-58226	4	0.833
NZ_CP012577_1	1.13\|703039\|24\|NZ_CP012577\|CRT	703039-703062	24	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	210775-210798	4	0.833
NZ_CP012577_1	1.15\|703123\|24\|NZ_CP012577\|CRT	703123-703146	24	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	210775-210798	4	0.833
NZ_CP012577_1	1.19\|703291\|24\|NZ_CP012577\|CRT	703291-703314	24	NC_012725	Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence	15063-15086	4	0.833
NZ_CP012577_1	1.19\|703291\|24\|NZ_CP012577\|CRT	703291-703314	24	NZ_CP035902	Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence	58203-58226	4	0.833
NZ_CP012577_1	1.20\|703333\|24\|NZ_CP012577\|CRT	703333-703356	24	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	210775-210798	4	0.833
NZ_CP012577_1	1.21\|703375\|24\|NZ_CP012577\|CRT	703375-703398	24	NC_012725	Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence	15063-15086	4	0.833
NZ_CP012577_1	1.21\|703375\|24\|NZ_CP012577\|CRT	703375-703398	24	NZ_CP035902	Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence	58203-58226	4	0.833
NZ_CP012577_1	1.22\|703417\|24\|NZ_CP012577\|CRT	703417-703440	24	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	210775-210798	4	0.833
NZ_CP012577_1	1.23\|703459\|24\|NZ_CP012577\|CRT	703459-703482	24	NC_012725	Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence	15063-15086	4	0.833
NZ_CP012577_1	1.23\|703459\|24\|NZ_CP012577\|CRT	703459-703482	24	NZ_CP035902	Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence	58203-58226	4	0.833
NZ_CP012577_1	1.24\|703501\|24\|NZ_CP012577\|CRT	703501-703524	24	NZ_CP021031	Rhizobium sp. NXC14 plasmid pRspNXC14a, complete sequence	88776-88799	4	0.833
NZ_CP012577_1	1.24\|703501\|24\|NZ_CP012577\|CRT	703501-703524	24	NZ_CP020910	Rhizobium etli strain NXC12 plasmid pRetNXC12d, complete sequence	69717-69740	4	0.833
NZ_CP012577_1	1.24\|703501\|24\|NZ_CP012577\|CRT	703501-703524	24	NZ_CP020910	Rhizobium etli strain NXC12 plasmid pRetNXC12d, complete sequence	90917-90940	4	0.833
NZ_CP012577_1	1.2\|702577\|24\|NZ_CP012577\|CRT	702577-702600	24	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	362719-362742	5	0.792
NZ_CP012577_1	1.14\|703081\|24\|NZ_CP012577\|CRT	703081-703104	24	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	362719-362742	5	0.792
NZ_CP012577_1	1.16\|703165\|24\|NZ_CP012577\|CRT	703165-703188	24	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	362719-362742	5	0.792
NZ_CP012577_1	1.27\|703627\|24\|NZ_CP012577\|CRT	703627-703650	24	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	640343-640366	5	0.792

1. spacer 1.27|703627|24|NZ_CP012577|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 2, identity: 0.917

ctgcccgtcgcctgcgcaccgtta	CRISPR spacer
ctgcccgtcgccggcgcaccgttc	Protospacer
************ **********

2. spacer 1.1|702535|24|NZ_CP012577|CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 3, identity: 0.875

tcacccgacgcggcggcatcctgc	CRISPR spacer
acacccagcgcggcggcatcctgc	Protospacer
 *****..****************

3. spacer 1.1|702535|24|NZ_CP012577|CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 3, identity: 0.875

tcacccgacgcggcggcatcctgc	CRISPR spacer
acacccagcgcggcggcatcctgc	Protospacer
 *****..****************

4. spacer 1.1|702535|24|NZ_CP012577|CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 3, identity: 0.875

tcacccgacgcggcggcatcctgc	CRISPR spacer
acacccagcgcggcggcatcctgc	Protospacer
 *****..****************

5. spacer 1.1|702535|24|NZ_CP012577|CRT matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.875

tcacccgacgcggcggcatcctgc	CRISPR spacer
acacccagcgcggcggcatcctgc	Protospacer
 *****..****************

6. spacer 1.1|702535|24|NZ_CP012577|CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 3, identity: 0.875

tcacccgacgcggcggcatcctgc	CRISPR spacer
tcagccgacgcggcggcagcctgt	Protospacer
*** ************** ****.

7. spacer 1.27|703627|24|NZ_CP012577|CRT matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 3, identity: 0.875

ctgcccgtcgcctgcgcaccgtta	CRISPR spacer
ctggccgtcgcctgcgcgccgttc	Protospacer
*** *************.*****

8. spacer 1.27|703627|24|NZ_CP012577|CRT matches to NZ_CP025552 (Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

ctgcccgtcgcctgcgcaccgtta	CRISPR spacer
ctgcccgtcgtctgcgtaccgttg	Protospacer
**********.*****.******.

9. spacer 1.6|702745|24|NZ_CP012577|CRT matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 4, identity: 0.833

gtgcccgacgcggtggcatcctgg	CRISPR spacer
ttgcccgacgcggtggcatcggtg	Protospacer
 *******************   *

10. spacer 1.8|702829|24|NZ_CP012577|CRT matches to NC_012725 (Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence) position: , mismatch: 4, identity: 0.833

tcacccgacgcggtggcatcctgc	CRISPR spacer
tcacccgacgcggtggcacccgtt	Protospacer
******************.**  .

11. spacer 1.8|702829|24|NZ_CP012577|CRT matches to NZ_CP035902 (Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence) position: , mismatch: 4, identity: 0.833

tcacccgacgcggtggcatcctgc	CRISPR spacer
tcacccgacgcggtggcacccgtt	Protospacer
******************.**  .

12. spacer 1.10|702913|24|NZ_CP012577|CRT matches to NC_012725 (Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence) position: , mismatch: 4, identity: 0.833

tcacccgacgcggtggcatcctgc	CRISPR spacer
tcacccgacgcggtggcacccgtt	Protospacer
******************.**  .

13. spacer 1.10|702913|24|NZ_CP012577|CRT matches to NZ_CP035902 (Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence) position: , mismatch: 4, identity: 0.833

tcacccgacgcggtggcatcctgc	CRISPR spacer
tcacccgacgcggtggcacccgtt	Protospacer
******************.**  .

14. spacer 1.12|702997|24|NZ_CP012577|CRT matches to NC_012725 (Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence) position: , mismatch: 4, identity: 0.833

tcacccgacgcggtggcatcctgc	CRISPR spacer
tcacccgacgcggtggcacccgtt	Protospacer
******************.**  .

15. spacer 1.12|702997|24|NZ_CP012577|CRT matches to NZ_CP035902 (Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence) position: , mismatch: 4, identity: 0.833

tcacccgacgcggtggcatcctgc	CRISPR spacer
tcacccgacgcggtggcacccgtt	Protospacer
******************.**  .

16. spacer 1.13|703039|24|NZ_CP012577|CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 4, identity: 0.833

ttccccgtcgcttgcgaaccttgg	CRISPR spacer
ggccccgacgcttgcgaaccttgc	Protospacer
  ***** ***************

17. spacer 1.15|703123|24|NZ_CP012577|CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 4, identity: 0.833

ttccccgtcgcttgcgaaccttgg	CRISPR spacer
ggccccgacgcttgcgaaccttgc	Protospacer
  ***** ***************

18. spacer 1.19|703291|24|NZ_CP012577|CRT matches to NC_012725 (Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence) position: , mismatch: 4, identity: 0.833

tcacccgacgcggtagcaccctgg	CRISPR spacer
tcacccgacgcggtggcacccgtt	Protospacer
**************.******

19. spacer 1.19|703291|24|NZ_CP012577|CRT matches to NZ_CP035902 (Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence) position: , mismatch: 4, identity: 0.833

tcacccgacgcggtagcaccctgg	CRISPR spacer
tcacccgacgcggtggcacccgtt	Protospacer
**************.******

20. spacer 1.20|703333|24|NZ_CP012577|CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 4, identity: 0.833

tcccccgtcgcttgcgaaccttgg	CRISPR spacer
ggccccgacgcttgcgaaccttgc	Protospacer
  ***** ***************

21. spacer 1.21|703375|24|NZ_CP012577|CRT matches to NC_012725 (Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence) position: , mismatch: 4, identity: 0.833

tcacccgacgcggtagcaccctgg	CRISPR spacer
tcacccgacgcggtggcacccgtt	Protospacer
**************.******

22. spacer 1.21|703375|24|NZ_CP012577|CRT matches to NZ_CP035902 (Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence) position: , mismatch: 4, identity: 0.833

tcacccgacgcggtagcaccctgg	CRISPR spacer
tcacccgacgcggtggcacccgtt	Protospacer
**************.******

23. spacer 1.22|703417|24|NZ_CP012577|CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 4, identity: 0.833

tcccccgtcgcttgcgaaccttgg	CRISPR spacer
ggccccgacgcttgcgaaccttgc	Protospacer
  ***** ***************

24. spacer 1.23|703459|24|NZ_CP012577|CRT matches to NC_012725 (Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence) position: , mismatch: 4, identity: 0.833

tcacccgacgcggtggcatcctgc	CRISPR spacer
tcacccgacgcggtggcacccgtt	Protospacer
******************.**  .

25. spacer 1.23|703459|24|NZ_CP012577|CRT matches to NZ_CP035902 (Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence) position: , mismatch: 4, identity: 0.833

tcacccgacgcggtggcatcctgc	CRISPR spacer
tcacccgacgcggtggcacccgtt	Protospacer
******************.**  .

26. spacer 1.24|703501|24|NZ_CP012577|CRT matches to NZ_CP021031 (Rhizobium sp. NXC14 plasmid pRspNXC14a, complete sequence) position: , mismatch: 4, identity: 0.833

ctacccgtcgcttgcgaaccttgg	CRISPR spacer
tgacccgtcgcttgggaaccttgt	Protospacer
. ************ ********

27. spacer 1.24|703501|24|NZ_CP012577|CRT matches to NZ_CP020910 (Rhizobium etli strain NXC12 plasmid pRetNXC12d, complete sequence) position: , mismatch: 4, identity: 0.833

ctacccgtcgcttgcgaaccttgg	CRISPR spacer
tgacccgtcgcttgggaaccttgt	Protospacer
. ************ ********

28. spacer 1.24|703501|24|NZ_CP012577|CRT matches to NZ_CP020910 (Rhizobium etli strain NXC12 plasmid pRetNXC12d, complete sequence) position: , mismatch: 4, identity: 0.833

ctacccgtcgcttgcgaaccttgg	CRISPR spacer
tgacccgtcgcttgggaaccttgt	Protospacer
. ************ ********

29. spacer 1.2|702577|24|NZ_CP012577|CRT matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 5, identity: 0.792

gtgcccgacgcggtggcatcctga	CRISPR spacer
ttgcccgacgcggtggcatcggtg	Protospacer
 *******************   .

30. spacer 1.14|703081|24|NZ_CP012577|CRT matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 5, identity: 0.792

gtgcccgacgcggtggcatcctga	CRISPR spacer
ttgcccgacgcggtggcatcggtg	Protospacer
 *******************   .

31. spacer 1.16|703165|24|NZ_CP012577|CRT matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 5, identity: 0.792

gtgcccgacgcggtggcatcctga	CRISPR spacer
ttgcccgacgcggtggcatcggtg	Protospacer
 *******************   .

32. spacer 1.27|703627|24|NZ_CP012577|CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 5, identity: 0.792

ctgcccgtcgcctgcgcaccgtta	CRISPR spacer
tggcccgtcgcctgcgcaccggct	Protospacer
. ******************* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

54163 : 121620

Aeromonas_phage(25.0%)

plate,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004530063.1\|54163_55114_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004523149.1\|55381_56326_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_004530060.1\|56797_58501_+	thermolysin metallopeptidase	NA	NA	NA	NA
WP_004545903.1\|58618_59845_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_004200640.1\|59899_61042_-	porin	NA	NA	NA	NA
WP_004198249.1\|61150_61273_-	hypothetical protein	NA	NA	NA	NA
WP_004535106.1\|61269_62268_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004554842.1\|62303_63857_-\|holin	choline-sulfatase	NA	NA	NA	NA
WP_004523143.1\|63992_64892_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004186920.1\|65035_65911_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_004530057.1\|65997_67653_-	APC family permease	NA	NA	NA	NA
WP_004523141.1\|67833_68697_-	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004530056.1\|68806_69952_-	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004523139.1\|69972_71241_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_004530055.1\|71265_72051_-	drug:proton antiporter	NA	NA	NA	NA
WP_004523138.1\|72047_73220_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004186901.1\|73224_75150_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_004523137.1\|75152_77216_-	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_004186987.1\|77276_77810_-	4-vinyl reductase	NA	NA	NA	NA
WP_004535113.1\|77960_78932_-	membrane dipeptidase	NA	NA	NA	NA
WP_004523136.1\|79004_80279_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.3e-105	54.1
WP_009923708.1\|80290_80554_-	hypothetical protein	NA	NA	NA	NA
WP_004198247.1\|80712_81738_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_004523135.1\|81915_83115_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	8.4e-12	27.2
WP_004530052.1\|83561_84578_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004530051.1\|84766_86332_+	glycoside hydrolase 68 family protein	NA	NA	NA	NA
WP_004530050.1\|86464_88129_+	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	4.1e-57	31.6
WP_053565654.1\|88641_89895_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004528656.1\|90375_91959_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_004532079.1\|91955_92138_-	hypothetical protein	NA	NA	NA	NA
WP_038715302.1\|92263_93259_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_004524286.1\|93487_95074_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_011857650.1\|95070_96390_-	glycosyltransferase	NA	NA	NA	NA
WP_076854645.1\|96397_96526_-	hypothetical protein	NA	NA	NA	NA
WP_004524288.1\|96611_97511_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_009923697.1\|97790_97964_+	hypothetical protein	NA	NA	NA	NA
WP_004530793.1\|98061_98433_-	hypothetical protein	NA	NA	NA	NA
WP_004190471.1\|98657_99083_-	hypothetical protein	NA	NA	NA	NA
WP_004190863.1\|99105_99465_-	hypothetical protein	NA	NA	NA	NA
WP_004525554.1\|99523_103027_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004530043.1\|103023_104739_-	OmpA family protein	NA	NA	NA	NA
WP_004525552.1\|104764_106126_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004530042.1\|106122_106716_-	lipoprotein	NA	NA	NA	NA
WP_004190606.1\|106721_107111_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004525551.1\|107153_107870_-	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004525550.1\|107872_108943_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004530041.1\|108942_111159_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004190563.1\|111162_113451_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004525548.1\|113616_115908_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004530040.1\|115898_118769_-	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	2.4e-60	27.2
WP_004190851.1\|118771_119761_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004196180.1\|119757_121620_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

285528 : 295032

Burkholderia_virus(62.5%)

integrase,transposase

attL 273705:273721|attR 300087:300103

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
273705:273721	attL	NA	NA	NA	NA
WP_004525420.1\|285528_285813_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0
WP_004549731.1\|285796_286066_-	BrnT family toxin	NA	NA	NA	NA
WP_038716556.1\|286636_286912_+	hypothetical protein	Q8W6Q1	Burkholderia_virus	1.4e-42	97.8
WP_009923452.1\|286921_287053_+	bacteriophage protein Gp48	Q8W6Q2	Burkholderia_virus	2.6e-15	97.7
WP_038716558.1\|287054_287162_+	hypothetical protein	Q6JIH6	Burkholderia_virus	3.4e-10	88.6
WP_004545584.1\|287190_287433_+	hypothetical protein	NA	NA	NA	NA
WP_004542548.1\|288084_288666_-	hypothetical protein	A9YX38	Burkholderia_phage	2.2e-21	100.0
WP_004542626.1\|288921_289071_+	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	7.4e-19	98.0
WP_045243524.1\|289067_290267_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JX31	Burkholderia_virus	6.9e-224	99.2
WP_004530731.1\|290562_292578_-	cation acetate symporter	NA	NA	NA	NA
WP_004545569.1\|292571_292952_-	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_024431204.1\|293049_295032_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	4.0e-83	44.8
300087:300103	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1128646 : 1194470

Stx2-converting_phage(28.57%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004190585.1\|1128646_1130050_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004190689.1\|1130065_1131382_+	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_004524806.1\|1131384_1135014_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_080378993.1\|1135019_1136015_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_004529325.1\|1135999_1136227_-	hypothetical protein	NA	NA	NA	NA
WP_053565676.1\|1136225_1138823_+	serine/threonine protein kinase	M1I231	Acanthocystis_turfacea_Chlorella_virus	2.5e-08	26.2
WP_004529323.1\|1138875_1139955_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004524810.1\|1140017_1140596_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004190849.1\|1140588_1142097_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004190698.1\|1142156_1142648_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_050376259.1\|1142666_1143227_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_050376258.1\|1143231_1145103_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004537556.1\|1145099_1146545_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004533146.1\|1146557_1149224_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	5.2e-78	30.6
WP_004203275.1\|1149220_1151425_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.6e-46	29.9
WP_004196151.1\|1151499_1152153_+	hypothetical protein	NA	NA	NA	NA
WP_050773484.1\|1152112_1153372_+	DUF746 domain-containing protein	NA	NA	NA	NA
WP_004552182.1\|1154103_1154889_-	hypothetical protein	NA	NA	NA	NA
WP_076808573.1\|1156282_1157341_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_075019267.1\|1157691_1159752_+	hypothetical protein	NA	NA	NA	NA
WP_004536997.1\|1161073_1162315_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_004544732.1\|1162347_1163301_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_004533190.1\|1163301_1164153_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_031313668.1\|1164157_1166329_+	alpha-galactosidase	NA	NA	NA	NA
WP_004533113.1\|1166569_1168603_+	hypothetical protein	NA	NA	NA	NA
WP_004533334.1\|1169035_1169443_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	4.6e-10	34.9
WP_004524834.1\|1169439_1169787_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.6e-40	72.9
WP_009935223.1\|1170898_1171345_+	hypothetical protein	NA	NA	NA	NA
WP_004530178.1\|1173980_1175249_+	hypothetical protein	NA	NA	NA	NA
WP_080378976.1\|1175262_1179894_+	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	8.3e-23	34.9
WP_004533385.1\|1180485_1180749_+	hypothetical protein	NA	NA	NA	NA
WP_071811406.1\|1180749_1180947_+	hypothetical protein	NA	NA	NA	NA
WP_053565678.1\|1181098_1190524_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_004533256.1\|1190966_1192727_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_004533207.1\|1192945_1193320_+	DUF746 domain-containing protein	NA	NA	NA	NA
WP_101662898.1\|1193350_1194470_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.8e-48	39.1

DBSCAN-SWA_4

1679753 : 1689530

Ralstonia_phage(25.0%)

integrase

attL 1679998:1680012|attR 1694162:1694176

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053565729.1\|1679753_1681679_+	selenocysteine-specific translation elongation factor	A0A2K9KZ60	Tupanvirus	2.4e-16	29.4
1679998:1680012	attL	NA	NA	NA	NA
WP_050858262.1\|1682030_1683257_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	9.8e-141	61.8
WP_080366004.1\|1683246_1683486_-	AlpA family transcriptional regulator	A0A077K9Z8	Ralstonia_phage	2.1e-15	66.7
WP_080366005.1\|1683526_1683781_-	hypothetical protein	NA	NA	NA	NA
WP_154394634.1\|1683777_1684092_-	hypothetical protein	NA	NA	NA	NA
WP_143292323.1\|1684088_1684457_-	hypothetical protein	NA	NA	NA	NA
WP_053565686.1\|1684453_1684666_-	hypothetical protein	NA	NA	NA	NA
WP_080378982.1\|1684665_1685241_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	6.2e-05	27.5
WP_080378983.1\|1685430_1685691_-	hypothetical protein	C5IHM5	Burkholderia_virus	6.1e-08	44.8
WP_053565688.1\|1685684_1687040_-	hypothetical protein	Q8W6Q9	Burkholderia_virus	7.3e-28	38.1
WP_038720344.1\|1687060_1687345_-	hypothetical protein	NA	NA	NA	NA
WP_038720343.1\|1687341_1688010_-	HNH endonuclease	NA	NA	NA	NA
WP_063921002.1\|1688175_1688835_-	hypothetical protein	NA	NA	NA	NA
WP_038720341.1\|1688865_1689060_-	hypothetical protein	A9YX20	Burkholderia_phage	3.0e-20	83.1
WP_050858082.1\|1689056_1689530_-	hypothetical protein	A9YX19	Burkholderia_phage	3.1e-50	67.4
1694162:1694176	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1703116 : 1710212

Mycobacterium_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080378986.1\|1703116_1703896_+	site-specific DNA-methyltransferase	S5YD89	Mycobacterium_phage	1.4e-84	61.0
WP_053565697.1\|1703867_1705316_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	2.7e-275	92.9
WP_080378987.1\|1705312_1706002_-	DNA cytosine methyltransferase	A0A0H5AU88	Pseudomonas_phage	3.4e-58	51.6
WP_053565698.1\|1706104_1707499_+	replicative DNA helicase	C7BGG1	Burkholderia_phage	1.6e-94	48.1
WP_038720276.1\|1707491_1708025_+	polynucleotidyl transferase	NA	NA	NA	NA
WP_050863552.1\|1708024_1708591_+	hypothetical protein	NA	NA	NA	NA
WP_038720272.1\|1708590_1708881_+	hypothetical protein	NA	NA	NA	NA
WP_143293768.1\|1708877_1709120_+	hypothetical protein	NA	NA	NA	NA
WP_038720302.1\|1709140_1709443_+	DUF968 domain-containing protein	A0A0R6PD09	Moraxella_phage	4.1e-08	46.0
WP_038720269.1\|1709439_1709679_+	hypothetical protein	NA	NA	NA	NA
WP_038720266.1\|1709675_1710212_+	hypothetical protein	A0A0H3UZE4	Geobacillus_virus	4.3e-32	38.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012576

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012576_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012576_1

298730-298809

Orphan

Consensus_repeat	Method
ACGGAATGGGCCCCGGCATGATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012576_1

>merge|NZ_CP012576|1|298730-298809|CRISPRCasFinder
ACGGAATGGGCCCCGGCATGATGGGCGGCGGCTACGGGCGCGGAATGATGGGCGGCTACGGAATGGGGCCCGGCATGATG

>NZ_CP012576|1|1|298730-298809|CRISPRCasFinder
ACGGAATGGGCCCCGGCATGATG	GGCGGCGGCTACGGGCGCGGAATGATGGGCGGCT
ACGGAATGGGGCCCGGCATGATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012576.1\|WP_123903078.1\|292856_293690_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012576.1\|WP_004525842.1\|294261_295137_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP012576.1\|WP_004190110.1\|304755_305850_-\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	unknown	unknown	gnl\|CDD\|185333
NZ_CP012576.1\|WP_123850073.1\|293837_294227_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012576.1\|WP_004524603.1\|308513_309074_-\|spermidine-N1-acetyltransferase	unknown	unknown	gnl\|CDD\|237916
NZ_CP012576.1\|WP_004523107.1\|291561_291846_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012576.1\|WP_004197759.1\|306906_307461_-\|YaeQ-family-protein	unknown	unknown	gnl\|CDD\|377782
NZ_CP012576.1\|WP_004553744.1\|289540_290545_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369676
NZ_CP012576.1\|WP_004200731.1\|291082_291565_+\|DUF2778-domain-containing-protein	unknown	unknown	gnl\|CDD\|378506
NZ_CP012576.1\|WP_004523110.1\|295147_296260_-\|histone-deacetylase	unknown	unknown	gnl\|CDD\|212521
NZ_CP012576.1\|WP_076804590.1\|307680_308025_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012576.1\|WP_038715869.1\|299254_299371_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012576.1\|WP_044362973.1\|291919_292933_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|222860
NZ_CP012576.1\|WP_009917993.1\|299767_300316_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012576.1\|WP_004554141.1\|296288_297383_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP012576.1\|WP_004197761.1\|306251_306668_+\|lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|319916
NZ_CP012576.1\|WP_004535730.1\|303817_304759_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP012576.1\|WP_009969926.1\|297525_298494_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP012576.1\|WP_076802258.1\|302045_303647_-\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NZ_CP012576.1\|WP_004543103.1\|300578_302027_+\|RNA-polymerase-sigma-factor-RpoD/SigA	unknown	unknown	gnl\|CDD\|274108

Protein	Function_ID	Function_description	E-value
NZ_CP012576.1\|WP_004525842.1\|294261_295137_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP012576.1\|WP_004190110.1\|304755_305850_-\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	gnl\|CDD\|185333	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada.	2.28522e-121
NZ_CP012576.1\|WP_004524603.1\|308513_309074_-\|spermidine-N1-acetyltransferase	gnl\|CDD\|237916	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.	7.47948e-86
NZ_CP012576.1\|WP_004197759.1\|306906_307461_-\|YaeQ-family-protein	gnl\|CDD\|377782	pfam07152, YaeQ, YaeQ protein. This family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH, a specialized transcription elongation protein. YaeQ is known to compensate for loss of RfaH function.	3.23549e-104
NZ_CP012576.1\|WP_004553744.1\|289540_290545_+\|hypothetical-protein	gnl\|CDD\|369676	pfam08065, K167R, K167R (NUC007) repeat. This family represents the K167/Chmadrin repeat. The function of this repeat is unknown.	0.0060801
NZ_CP012576.1\|WP_004200731.1\|291082_291565_+\|DUF2778-domain-containing-protein	gnl\|CDD\|378506	pfam10908, DUF2778, Protein of unknown function (DUF2778). This is a bacterial family of uncharacterized proteins.	2.57059e-50
NZ_CP012576.1\|WP_004523110.1\|295147_296260_-\|histone-deacetylase	gnl\|CDD\|212521	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII. This subfamily includes bacterial as well as eukaryotic Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Included in this family is a bacterial HDAC-like amidohydrolase (Bordetella/Alcaligenes species FB18817, denoted as FB188 HDAH) shown to be most similar in sequence and function to class II HDAC6 domain 3 or b (HDAC6b). FB188 HDAH is able to remove the acetyl moiety from acetylated histones, and can be inhibited by common HDAC inhibitors such as SAHA (suberoylanilide hydroxamic acid) as well as class II-specific but not class I specific inhibitors.	1.0559e-172
NZ_CP012576.1\|WP_044362973.1\|291919_292933_-\|phage-portal-protein	gnl\|CDD\|222860	PHA02536, Q, portal vertex protein; Provisional.	0
NZ_CP012576.1\|WP_004554141.1\|296288_297383_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.98688e-149
NZ_CP012576.1\|WP_004197761.1\|306251_306668_+\|lactoylglutathione-lyase	gnl\|CDD\|319916	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins. Uncharacterized subfamily of VOC family contains human glyoxalase domain-containing protein 5 and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.46868e-30
NZ_CP012576.1\|WP_004535730.1\|303817_304759_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	9.65357e-54
NZ_CP012576.1\|WP_009969926.1\|297525_298494_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.2189e-71
NZ_CP012576.1\|WP_076802258.1\|302045_303647_-\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NZ_CP012576.1\|WP_004543103.1\|300578_302027_+\|RNA-polymerase-sigma-factor-RpoD/SigA	gnl\|CDD\|274108	TIGR02393, RNA_polymerase_sigma_factor_RpoD, RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc. [Transcription, Transcription factors].	2.71742e-88

>NZ_CP012576.1|WP_009969926.1|297525_298494_+|LysR-family-transcriptional-regulator
MRRIDLLSALETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYLATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRIELSLSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSNRGLLCASPGYLARRGRPTAPADLARHDCVIYRHPTLANTWTFERGGVRARLEPKGPLVTDDYGLALAAALDGAGVLPCPQWSVVDALEAGRLVPLLVDWRFESASFGEDRICAAYPSSRRGSTKIRRLVERVQARLADSEARVARVLGDALCADLARR
>NZ_CP012576.1|WP_004554141.1|296288_297383_-|polyamine-ABC-transporter-substrate-binding-protein
MKRIAWLAAVLASLACAAARAADGNVLNIYNWAEYFAPDTIAGFEKETGIKVRLDVYDSNEALQTKLTTGNSGYDLVFPSNDFLARQIQAGLYRKLDKSRLPNLTNLDPAIVARAAEVDPGNQYSVPYMQGTFGLGLNVAKVKQALGGPLPANTLELIFNPAYAAKLERCGIAFNDAGSEVFPLALRYIGRDPNTTDPRDYEAALDMMKKIRPTIRQFIATPVMNDLATGDVCVVTGYSGAVLVAARRAAEAKNGQQIVYSLPSAGAPFWFDSMAIPKGAAHADHALRFIDYILRPDVVAKISNKVMYPNPNRVATPLVDRRLTANPAIYPDAATMRTLWVKRPMPPQAMRMQTRYWTRFKTGY
>NZ_CP012576.1|WP_004523110.1|295147_296260_-|histone-deacetylase
MIPTGLLFDPAFLSHRQGDLVYVVPHGTLNLGEHFDSPLRLAYTKQLLDAVGMTERLTRVAFARATDEQLLRVHRPEYLRQLAEACAVAGEQVVRLGDDAAGSASTEDVARLAAGAACAAVDAVMTGPLRQAYALIRPSGHHAGADFAMGYCYYNNVAIAARHAQAAHGVERVAIVDWDVHHGNGTQQAFYDDPSVLFVSLHEAANFPVDGGEARETGGGAGAGYNANVPLPSGTGDAGYRHAFDELVLPLVEAFAPQLILVSAGQDANAFDPLGRMRVQRDGFRHMARALRQAAGGACGGRIVMLQEGGYSLPYLPIATLGVLEGLVGWNAPFDDPHQFVQYPLGEGERAAVKAARAALAPYWPTLHRS
>NZ_CP012576.1|WP_004525842.1|294261_295137_-|N-carbamoylputrescine-amidase
MRKTTVAVTQMACDWNVDANLSRAERLVRDAAARGAQIVLLQELFETPYFCIDQHPAHLALAQPYEGHPWLMRFASLARELGVVLPVSFFERAGQTQFNSVAIFDADGRALGIYRKTHIPDGPGYTEKYYFTPGDTGFRVWDTAYGRIGVGICWDQWFPECARAMALAGAELLLYPSAIGSEPHDASIDSRAHWHNAQRGHAAANLMPVAASNRVGVERGASGEIVFYGSSFIAGADGEMIVECDRHGEAIATAEFDLDALAYRRRGWGVFRDRRPECYRALSEGAADRVR
>NZ_CP012576.1|WP_123850073.1|293837_294227_-|hypothetical-protein
MPIASAKKAAHVRAANPSALEGRRCRQTARQREALVTTAGLPMRGERRESAEGRAPAGACARARCFGWRTAFGAWRLACDAAARARTCRHRCGRREGGRSRNRRGPAWQCFGAVRHDPLPGPPKPAAVQ
>NZ_CP012576.1|WP_123903078.1|292856_293690_+|hypothetical-protein
MTGIGSSNVKTSARAGARIWRGLFLKVVAAELVTFEHAEGAVVDARRRHDDNPPETADIMALFAERSLESLPSISEDAPRGTMAPHPHAPRISSNRLRPHRIRDDVPPNRPALRHPTTPANLKDPAEQRRLKKRPFDTNRTEANFDSSITTRPAPAIPHRKKRECRRSSHLVRHPTYPMPECGATHAPCHAQRPPRRSGRELASHIPPAAAHSRARHRHLAKRPACRCEPVFSVSGRSEMNRLKRILNDQTIRENRASQARPRKENHLDGVPPDKGK
>NZ_CP012576.1|WP_044362973.1|291919_292933_-|phage-portal-protein
MRNRPRQIRAPARAEVFTFDDPMPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSALFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSGFVYVNGWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDKMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAELNDWLGDEVVRFDDYEIPLAPVAA
>NZ_CP012576.1|WP_004523107.1|291561_291846_+|hypothetical-protein
MKTIGRILLALVLTWPLLTGISSLPLLTHWFANGGEGWNALSPVFRALGSDGGEQNEEIFVGILLVISFVLALVLSFALFGLVDRLRHSTDRRA
>NZ_CP012576.1|WP_004200731.1|291082_291565_+|DUF2778-domain-containing-protein
MPAECTFVLNRSRLSTLTCPGFGSVPAFSGNGRYINDPGSTAVADKGPLPAGVYYIIDRQSGGHLGWFRDTVMDAALNTYRAEWFALYRIDGQIDDWTIVNGIRRGHFRLHPVGRLGESDGCITLTSRGQFDKLRAFLKAQPTTQVPGTSFRAYGKVTVK
>NZ_CP012576.1|WP_004553744.1|289540_290545_+|hypothetical-protein
MAQKKKVVYFLGAGASFGAGAKATVQAGHQLPIPTQATFRPTFLRFCKSQKNRARIESFLFRYFLGYGKTPVRTPAAKRRHLLTSIDVEEVFTFLSERTRAPSTSTQLRTYALQVWGALAEEIGQVFSRFNANSATKAIYKDFLKHHFRRFDTVVSFNYDTIFENSLPARRSARYVGLRDSAGTIPLLKPHGSVNWVQADDGTITVGNPVGPAVIVAPTHLKFIADPDQKEVQHPGYLDQAHEIQKIWAEMEREMRFARSLVFIGYSFPVADLYFASVLRSVLADRDTTPNIVIVNPDAVAISERLLRRFPLVTVSRFFDLAQFIRAGRAVIAQ
>NZ_CP012576.1|WP_038715869.1|299254_299371_-|hypothetical-protein
MLVGRIMPTPEAEAEAEAPTRRSAEAQKRFAGLRYTGT
>NZ_CP012576.1|WP_009917993.1|299767_300316_+|hypothetical-protein
MEEAYARRALLLHLGSVLQILSRLEGAPDNQSIETLLAANGMLADVPLVEYVVQDMTVREFSARALRAFCLWPQLLLEDPLDCAALALPVRKHLFAGNDAGWKAYAATLREVAPGFDTARSYAAEPHEAEFDLADERDAETGDGPVERDDEADDDGRLRERAAASVESATPAGAPVRRESYE
>NZ_CP012576.1|WP_004543103.1|300578_302027_+|RNA-polymerase-sigma-factor-RpoD/SigA
MKVSARELRYEQGIDRLLELAGARDDTEYADVADEFASAPSSAFAHDLGEPDSLDHQASDESAGAGSFGDKPTRPAHGDTDVDTDWRDDDAPPSGSNDAAPVDTAASTDPLALFVRRMHAVPLLTHAQEIALAAEIEAGREQVLQALAEALDRLDLASLPADPALGRARAALQRARARGDEGARAFARARTAAYAALAAHGWPSAEVDAVRRAMRRLPTSPEKSDAGAQRAFADGEARISAATARMAEANLRLVLSIARKYASRGLDLADLLQEGNLGLLRAIEKFEHRRGFKFSTYATWWIRQAISRAIADRARTIRVPVHVGDEARRVRKAADRIERRSGVSASLAELSEATGLPAERLRAVLTLPREPRSLNAPLGDDDQAEFGDIVEDTSTPSLFDALAHGQMCDVVTSLLKTMSAQEADILRRRFGIGGDEPWSYEQIAARAGVSREQVRRIEKRALQTLRVTAEACNAHDFLDVQP
>NZ_CP012576.1|WP_076802258.1|302045_303647_-|glutamate--cysteine-ligase
MTSRQTDLLQQRLAVLSTSPTREQLPDGLRGIEKESLRVTRDGMIAFTPHPRALGSALTHPSLTTDYSEALVELITPAERDAATTLERLDELHRYVYASLGDEMLWTDSMPGLLPADDEIPIADYGTSNIGRLKTVYRRGLAYRYGRTMQCIAGIHYNYSLSEEVWRRLHAEEGSTAGIVDYQSERYLALIRNFRRTSWLLMYLFGASPALDAGFLRGRAHKLDTFDAATLYRPHATSLRMSDLGYSNTTAQAALQADYNTLSGYLDALSKAVSEPYPPYEAIGTHRDGEWIQINTNVLQIENEFYSTIRPKRVTYSGERPLHALASRGVQYIEVRCLDIDPFEPTGIALDTARFLDAYLLVCALDESAPLTCDAYRESNANFGRVTMEGRKPGLELTRDGAAVPMRAWADEIFAQIEAAGRVLDDIRGDDTHARAIAAQRAKLDDPELTSSARVLRAMRENGQSFLEFARAQSAAHAAYFHGRPLDEAATRDARALAERSLAEQAELEGKNAGSFDAFVAAYRAYTLNRFSV
>NZ_CP012576.1|WP_004535730.1|303817_304759_-|DNA-3-methyladenine-glycosylase-2-family-protein
MSAAVEPAAVRPDSVVLELPFKSPYDWPRVLRFFAGRAIPGVEAVGDGAYRRTVDHHGAIGTLTVRKHPRKRCLVALVEGDAARHADAAFAARLSTMFDLQADPAAIGAHLARDAWFAPLVGAAPGLRVPGAWSGFELIVRAIVGQQVSVKAATTIVGRLVERAGERLAPHAPGAIGWRFPEPAALAACDVSRIGMPGKRAAALQGVARAVASGDVPLDAYASDPAGVRAALLALPGIGPWTVEYVAMRAWRDADAWPATDLVLMQAIVARDPALDRPASQRLRADAWRPWRAYAAMHLWNEIADRAGSARGG
>NZ_CP012576.1|WP_004190110.1|304755_305850_-|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada
MKQPPYPTDDARWAALVARDVDADGAFCYAVKTTGVFCRPSCASRLPRRENVSFFADTGAARAAGYRPCKRCRPEGLPRELDIVNRACAVLDAHRQDRFTLAQLSDAVHVSPFHLQRLFKRVVGVSPRQYQAAQRGAALRDALQSGAAVTRAAVDAGFNSPSRLYESVPRELGMSPSAFRRKGAGLKIDYATADTRLGVVLVAATSKGICKIAFGDAAAPLVDELRTGFANAQIAESPERIAPFIAQIDAYLNGTRRRFELPLDLAATEFQQRVWDALRRIPYGETRSYTQIAEALGAPRAVRAVASACASNPVALAIPCHRVVQKGGSLAGYRWGLPRKAALLDAEAQRAAGESVESAVDHAA
>NZ_CP012576.1|WP_004197761.1|306251_306668_+|lactoylglutathione-lyase
MKFHIHEIDHVVLRAADLAAMTRFYCDVLGCHVEKEQRELGLVQLRAGRSLIDLLAVGAPIDRAGSGAPGKGRNMDHLCLRVEPFDAAALRTHLAAHGARPGDEARRYGADGYGPSLYLFDPEGNMVELKGPPEAVAP
>NZ_CP012576.1|WP_004197759.1|306906_307461_-|YaeQ-family-protein
MALKSTIYKAELQIADMDRHYYADHSLTVARHPSETDERMMVRIAAFALFAHERLEFCKGLSDTDEPDLWQKDLTGAIEVWIDVGQPDERRIAKASGRAGRVNVIAYGGRTSDIWWQGARGKVERLRNVQVTTLADGVAAALGGLAERTMRLQCTIQDGAAWLSSATHDPVAIEWTTLKAREDA
>NZ_CP012576.1|WP_076804590.1|307680_308025_-|hypothetical-protein
MKRTGLFLALAGGIVAFSVAQANGDASLKPQQEIQLTKNAWGCLSKDNLDSVLNHERDGKAQAKQQYFDDYRCLSVPEGQRFRVVSVDKGDVQFVSAENSDQQGLWTDARFIKQ
>NZ_CP012576.1|WP_004524603.1|308513_309074_-|spermidine-N1-acetyltransferase
MQIQNEQHTLALRPLERQDLRFVHELNNDAKIMRYWFEEPYETFTELSQLYDQHVHDQRERRFVAFDSDGELVGLVELIELDYIHRRGEFQIIIAPNRQGRGFATRATRLAVEYAFKVLNLRKLYLIVDKSNVAAIRVYEKCGFKHEAELIEEFFGNGQYHNALRMCIFQRDYFAAQPGAELHARE

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Crispr_ID: NZ_CP012576_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012576_2

461740-462102

Orphan

Consensus_repeat	Method
AAGCGCTGAAGCGNTGACTC	CRT

7 spacers

The CRISPR arrays of NZ_CP012576_2

>merge|NZ_CP012576|2|461740-462102|CRT
GAGCGCTGAAGCGTTCGCTTCGGTCGACCGCCGCGGGGCCAGAGTAAAGCGCTGAAGCGCTGACTCTGGCCGACCACGGCATGGGATCGGAGTAAGTGCTGAAGCGTTGACTCCGATCGACCGCCGCGGGGCCAGAGTAAAGCGCTGAAGCGCTGACTCTGGCCGACCACGGCATGGGATCGGAGTAAGTGCTGAAGCGTTGACTCCGATCGACCGCCGCGGGGCCAGAGTAAAGCGCTGAAGCGCTGACTCTGGCCGACCACGGCATGGGATCGGAGTAAGCGCTGAAGCGCTGACTCCGATCGACAGGAGTCGATATGGCAACCATCAAAGTAGACGTCGTCAGCGCCGAAGAGCAGATCT

>NZ_CP012576|2|1|461740-462102|CRT
GAGCGCTGAAGCGTTCGCTT	CGGTCGACCGCCGCGGGGCCAGAGTA
AAGCGCTGAAGCGCTGACTC	TGGCCGACCACGGCATGGGATCGGAGT
AAGTGCTGAAGCGTTGACTC	CGATCGACCGCCGCGGGGCCAGAGTA
AAGCGCTGAAGCGCTGACTC	TGGCCGACCACGGCATGGGATCGGAGT
AAGTGCTGAAGCGTTGACTC	CGATCGACCGCCGCGGGGCCAGAGTA
AAGCGCTGAAGCGCTGACTC	TGGCCGACCACGGCATGGGATCGGAGT
AAGCGCTGAAGCGCTGACTC	CGATCGACAGGAGTCGATATGGCAACCATCAAAGTAGACGTCGT
CAGCGCCGAAGAGCAGATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012576.1\|WP_009967348.1\|454363_454522_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012576.1\|WP_004538602.1\|455280_456132_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_CP012576.1\|WP_004530461.1\|459277_460153_+\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NZ_CP012576.1\|WP_004202912.1\|470283_470454_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341251
NZ_CP012576.1\|WP_025986094.1\|454637_455168_+\|ATP-synthase-subunit-I	unknown	unknown	gnl\|CDD\|377159
NZ_CP012576.1\|WP_076852495.1\|465031_465346_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NZ_CP012576.1\|WP_004185243.1\|460232_461627_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP012576.1\|WP_004195828.1\|456208_456478_+\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|180739
NZ_CP012576.1\|WP_111963022.1\|464904_465039_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224745
NZ_CP012576.1\|WP_004195834.1\|464486_464681_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012576.1\|WP_004524507.1\|457664_459206_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_CP012576.1\|WP_004185283.1\|456605_457076_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
NZ_CP012576.1\|WP_004524502.1\|466470_467565_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP012576.1\|WP_004525749.1\|465545_466331_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270231
NZ_CP012576.1\|WP_024429735.1\|462714_464445_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NZ_CP012576.1\|WP_004524499.1\|470737_474667_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP012576.1\|WP_004195838.1\|468005_470273_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP012576.1\|WP_004524500.1\|470548_470725_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012576.1\|WP_004524508.1\|457078_457618_+\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|235593
NZ_CP012576.1\|WP_009922758.1\|453215_454367_+\|citrate-transporter	unknown	unknown	gnl\|CDD\|238537

Protein	Function_ID	Function_description	E-value
NZ_CP012576.1\|WP_004538602.1\|455280_456132_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	4.13283e-72
NZ_CP012576.1\|WP_004530461.1\|459277_460153_+\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	2.10577e-157
NZ_CP012576.1\|WP_004202912.1\|470283_470454_-\|hypothetical-protein	gnl\|CDD\|341251	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12.	0.00325788
NZ_CP012576.1\|WP_025986094.1\|454637_455168_+\|ATP-synthase-subunit-I	gnl\|CDD\|377159	pfam03899, ATP-synt_I, ATP synthase I chain. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.	2.24671e-11
NZ_CP012576.1\|WP_076852495.1\|465031_465346_+\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	9.84356e-33
NZ_CP012576.1\|WP_004185243.1\|460232_461627_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP012576.1\|WP_004195828.1\|456208_456478_+\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|180739	PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated.	4.52385e-24
NZ_CP012576.1\|WP_111963022.1\|464904_465039_+\|hypothetical-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	8.4013e-11
NZ_CP012576.1\|WP_004524507.1\|457664_459206_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_CP012576.1\|WP_004185283.1\|456605_457076_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	5.5546e-56
NZ_CP012576.1\|WP_004524502.1\|466470_467565_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP012576.1\|WP_004525749.1\|465545_466331_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270231	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily. This subfamily includes cyclohexadienyl dehydratase PheC. These proteins catalyze the decarboxylation of prephenate to phenylpyruvate in the alternative phenylalanine biosynthesis pathway in some proteobacteria and archaea. The PheC proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Since they the PheC proteins are so similar to periplasmic binding proteins, (PBP), it is evolutionarily plausible that several pre-existing PBP proteins might have been recruited to perform the enzymatic function.	1.47897e-125
NZ_CP012576.1\|WP_024429735.1\|462714_464445_+\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NZ_CP012576.1\|WP_004524499.1\|470737_474667_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP012576.1\|WP_004195838.1\|468005_470273_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP012576.1\|WP_004524508.1\|457078_457618_+\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	2.00477e-65
NZ_CP012576.1\|WP_009922758.1\|453215_454367_+\|citrate-transporter	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	3.12688e-60

>NZ_CP012576.1|WP_004185243.1|460232_461627_+|F0F1-ATP-synthase-subunit-beta
MSTAALVEGKIVQCIGAVIDVEFPRESMPKIYDALILEGSELTLEVQQQLGDGVVRTICLGASDGLRRGVVVKNTGNPISVPVGKPTLGRIMDVLGRPIDEAGPIESENKRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLDVLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAVYVPADDLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSITRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ
>NZ_CP012576.1|WP_004530461.1|459277_460153_+|F0F1-ATP-synthase-subunit-gamma
MAGMKEIRGKIKSVQNTRKITKAMEMVAASKMRRAQERMRAARPYAEKVRAIAAHMSRANPEYRHPFMVANDGVKTAGMILVTTDKGLCGGLNTNVLRASLQKFKELEEQGQKVEATAIGGKGLGFLNRFGAKVISQVVHLGDTPHLDKLIGAVKTQLDLYSEGKLSAVYLAYTRFVNTMKQETVIEQLLPLSSEHFDTNDGTPATSWDYIYEPDAQAVVDELLVRYVEALVYQAVAENMASEQSARMVAMKAASDNAKTVISELQLSYNKSRQAAITKELSEIVGGAAAV
>NZ_CP012576.1|WP_004524507.1|457664_459206_+|F0F1-ATP-synthase-subunit-alpha
MQLNPSEISELIKSRIQGLEASADVRNQGTVISVTDGIVRIHGLSDVMQGEMLEFPGNTFGLALNLERDSVGAVILGEYEHISEGDIVKTTGRILEVPVGPELVGRVVDALGNPIDGKGPVNAKLTDAIEKIAPGVIWRKSVSQPVQTGLKSIDSMVPIGRGQRELIIGDRQCGKTAVAIDTIINQKGKDLICIYVAIGQKASSIMNVVRKLEETGALEYTIVVAASASESAAMQYLAPYAGCTMGEYFRDRGQDALIIYDDLTKQAWAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAARVSEEYVEKFTNGEVKGKSGSLTALPVIETQAGDVTAFVPTNVISITDGQIFLETDLFNAGIRPAINAGVSVSRVGGAAQTKVVKKLSGGIRTDLAQYRELAAFAQFASDLDEATRKQLERGRRVTELLKQPQYQPLQVWELAVSLFSANNGYLDDLDVKDVLPFEKGLREYLKTSHADLIKRIEDTKDLSKDDESALHAALKDFKKSGAY
>NZ_CP012576.1|WP_004524508.1|457078_457618_+|F0F1-ATP-synthase-subunit-delta
MAELATIARPYAEALFRVAEGGDISAWSTLVQELAQVAQLPEVLSVASSPKVSRTQVAELLLAALKSPLASGAQAKNFVQMLVDNHRIALLPEIAEQFEALKNAREGAADVQIVSAFPLEGAQLAELVTSLERKFKRKLKPAVEVDSSLIGGVRVTVGDEVLDTSVRARLAGMQAALTA
>NZ_CP012576.1|WP_004185283.1|456605_457076_+|F0F1-ATP-synthase-subunit-B
MNLNATLFAQMVVFLVLAWFTMKFVWPPLINALDERSKKIADGLAAAEKGKAELEAAHKRVDQELAQARNDGQQRIADAEKRALAVADEIKTNAQAEAARIIAQAKAEAEQQIVKARETLRGEVAALAVKGAEQILKREVDQTAHAELLNQLKAEL
>NZ_CP012576.1|WP_004195828.1|456208_456478_+|F0F1-ATP-synthase-subunit-C
MQAFIANIQGLTAIGIGIIIGLGAIGACIGIALMGGKYIEACARQPELINPLQTKMFLLAGLIDAAFLIGVGVAMLFAFANPLLSKLAG
>NZ_CP012576.1|WP_004538602.1|455280_456132_+|F0F1-ATP-synthase-subunit-A
MAASEGTRAPDPSEYIAHHLQNFSTSHQTSIFDIHVWNLDTLFWSIVCGLITILLLRLAARKATSGVPGRFQCAVEMLVEMVEDQSKAIVHGNRAFIAPLALTVFVWVALMNSLDFLPVDLPGRVIGWLGLSGIISHHRIVPTADLNGTLGIALGVFVLMLYYSIKIKGAGGFAHELVSAPFGSHPLLWIPNLALNIVEFVAKTVSLGMRLFGNMYAGELVFLLIALLGSMWSFGGDATFLGFVGHVIAGSVWAIFHILIVLLQAFIFMMLTLVYLGQAHDAH
>NZ_CP012576.1|WP_025986094.1|454637_455168_+|ATP-synthase-subunit-I
MADRAPDKRHEDRRAAQRTVSGAVGRRAAAADDWDAEHQEDDVVPLTRAEAQALFGPEVSRPSRVTPYRVVVAQMVLSLVATLAWWLFSRSPGAAAQSAFLGGAIGWVPSALFVARLRLSGAGTVMGWVAGEALKLGVTIAMFAAVAFGYPGVHWVPLLVTYLVVLKTYWIALAWR
>NZ_CP012576.1|WP_009967348.1|454363_454522_+|hypothetical-protein
MSSGAHRNGAGQRAFDARRAIENTYLTTVIGRQKFANFSHHEPLFHTDFCRV
>NZ_CP012576.1|WP_009922758.1|453215_454367_+|citrate-transporter
MPLDRAVSNSVVGRAPARIIAFVRHEPVLSILVAALIALQAVHSLSAIALVRLVDWQTVATLAGLLMLTKALELSGFLMWLAHRIVHRVRSERALAALLVVFAAALSVWLTNDVALFVVIPLVLSLRELTPLPFKRLVIYIALAVNAGAIATPLGNPQNLFLWQLSGVSFGRFVIALGPLALVLMALLLAMVVFAFDGRPLDLSRDSTERPVDRAQAFATVAMFAGFVLLADAHHALAGVLAVAAVFLIVRRDAVLKIDWLLLLIFVLMFIVLRSAASLPAVHQAIAGIGLDTPLRAYAAGALLSQIISNVPAAILLSEFTHDWRALAFGVSVGGFGIAFGSLANLIAIRLSRARGMWLPFHLVSIPFGIASAVLGALLLHYF
>NZ_CP012576.1|WP_024429735.1|462714_464445_+|AMP-binding-protein
MAADSGMGALIAPMHGLSYVRGPADVPLSDATIGQFLLDTVARFPDRAAVVFREQGVRWTWREFADEVDALAAALIQLGIARGDRVGIWSPNRAEWLLTQFATARIGAVLVNVNPAYRLAELEYALNKVGCKLLIAAERFKTSAYAEMIAEIAPELATTRAGDVLCAARVPSLRTVVTMSDAAHAGMLSFADVLARGRAALASARLDAIGATLDCRDPINIQFTSGTTGSPKGATLTHRNVVNNARSIANVMRLTEADAMCIPVPLYHCFGMVLSVLACVSAGAKMVFPGAAFEPGATLAAVSDERCTALQGVPTMFIAELDHPDFDRFDLSTLRTGIMAGSPCPIETMKRVVAKMHMSEVTIAYGMTETSPVSFQSATTDSLEKRTTTVGRIQPHLEAKIVDATGAIVPVGETGELCTRGYSVMLGYWDDEARTREAVVDGWMRTGDLATLDEEGFCNIVGRLKDMLIRGGENVYPREIEEFLFRHPKIQSVQVFGVPDSKYGEEVCAWIVLRAGETMTDDELREFCSGQIAHYKVPRYVRFVDELPMTVTGKVQKFVMRERMIDELGLSVQQTA
>NZ_CP012576.1|WP_004195834.1|464486_464681_+|hypothetical-protein
MSPLKTTRYGVSARRPKVERIGMGRRRLQQGCPWEGIRYETDGLVIRACVRSHAAHETASVLKP
>NZ_CP012576.1|WP_111963022.1|464904_465039_+|hypothetical-protein
MTAISTDEVPRKILKRDRVIAVVGFSDKPYRPSYEVAAYLRQNG
>NZ_CP012576.1|WP_076852495.1|465031_465346_+|CoA-binding-protein
MVNRIVPVNPLLAGAALLGERVHPSLADARAALAADGIEIDMVDVFRKPEEVPAVVDAALAIGARSLWLPPGVVHDEAAAKARTAGLDVVVGRCVKIEHRRRFG
>NZ_CP012576.1|WP_004525749.1|465545_466331_-|transporter-substrate-binding-domain-containing-protein
MKMNQTLLALACCAGLAHAQTAPQPGAPASRLDDVLARGTLRVCTTGDYKPYTYRREDGAFEGIDIDMAASLAKSLGVKTAFVKTTWPTLTDDFVAKCDIAVGGISTTLERQKRVFFTQPYVSDGKTPIVRCADAERYQTIAQIDQPQTRVIVNPGGTNERFAKQHFTRAKLTVFPDNVTIFKQILAGNADVMVTDASETLLQQKLNPGLCSVHPDKPFQFGEKAYMVPRGDVVFQQYVDQWLHLARETGELRAISDKWLK
>NZ_CP012576.1|WP_004524502.1|466470_467565_+|uroporphyrinogen-decarboxylase
MAQTLLNDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKQPDYATEVTLQPLERFPLDAAILFSDILTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVPDIGATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYVRRVLAQLKREHDGARVPAIAFTKGGGLWLEELAATGVDAVGLDWTVNLGRARERVAGRVALQGNLDPTILFAPPEAIRAEARAVLDSYGNHPGHVFNLGHGISQFTPPEHVAELVDEVHRHSRAIRSGAGS
>NZ_CP012576.1|WP_004195838.1|468005_470273_+|primosomal-protein-N'
MADAFVRVALDHPLPTLFDYRYRGDMPAAPGMLVQVPFGRRSVVGLVCEVTAHTDVPAAKLKAVDAVCTELPPLSRHWLELAAFAADYYQRGLGEVALPALPQALRDVPRWGRLLAPELRYRLLDAGRAALPDALPARGAALRRLAQALADAPALSLAEVRALHPKAVAVLDEWQAQGWAACDEIAITHADAQLVDNPAPASARRPTALPPQLTDQQAEALDAIAAADGFAPFLLHGVTGSGKTEVYLRALAALLERRPEAQALVLVPEINLTPQFEAAFRARFAATLPADAIVTLHSGLAEGERARHWLAAHTGRARIVLGTRLAVLASLPALAMIVVDEEHEPAYKQQEGLRYSARDLAVWRAKQLAIPVVLGSATPSLETWWQAEQGRYRRLTLTKRAVADAALPTVRLVDLEEERRRGRGSMGGLSGPLVAALKARLERGEQSLVFLNRRGYAPALACDACGWVAGCPRCSAYVVMHKPEHAVRCHHCGWEARIPRACPECGNVDIAPLGRGTQRVEETLALAVPGARILRIDADSTRRKGSAQALFSDVHAGEVDILVGTQMIAKGHDFQRVSLVGVLNADTALFSHDFRASERLFAQLMQVSGRAGRAGLPGEVLIQTRYPRHALYHALARQDYVGFAGATLGERRDAHLPPFVYQALLRAEGRTLDAALAFLQQAADAFSGLPGAERVTVYDAVPMTIVKVANVHRAQLLIESASRAALQHTLRAWQPLLRELKGVLRWSVEVDPLDI
>NZ_CP012576.1|WP_004202912.1|470283_470454_-|hypothetical-protein
MDGWVVIGIVLAAWIAGAIVFVHRASAVFFQALGCAQRVKKDERRARLSGLREAHE
>NZ_CP012576.1|WP_004524500.1|470548_470725_-|hypothetical-protein
MPARCRPRTLKDRKIVRQAIKRCNQISHPVAPHISPLLSIIYQKRQPARTTLNDRYFP
>NZ_CP012576.1|WP_004524499.1|470737_474667_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MASTTLGVKVDDLLRARLKDAASRLERTPHWLIKQAIFAYLERIEHGQLPPELSGHTGVADLSDSHADGDDDGAPHPFLEFAQSVQPQSVLRAAITAAYRRPEPECVPFLIGEARLPASLASDVQAMAAGLVEALREKSSGGGVEGLIHEFSLSSQEGVALMCLAEALLRIPDRATRDALIRDKISKGDWRSHVGHAPSLFVNAATWGLMITGKLVTTNSEAGLSSALTRLIGKGGEPLIRKGVDMAMRLMGEQFVTGETISEALANSRKYEARGFRYSYDMLGEAATTEEDALRYYASYEQAIHAIGKAAGGRGIYEGPGISIKLSALHARYSRSQQERTMNELLPRVRSLALLARRYDIGLNIDAEEADRLELSLDLLEALCFDPELAGWNGIGFVVQAYQKRCPFVIDYLVDLARRSRHRLMIRLVKGAYWDSEIKRAQVDGLEGYPVYTRKIYTDVSYLACAKKLLAAPDAVYPQFATHNAYTLAAIYHLAGQNYYPGQYEFQCLHGMGEPLYEEVTGRDKLNRPCRVYAPVGTHETLLAYLVRRLLENGANTSFVNRIADKTVSVKELVADPVEDALKVVPLGAPHAKIALPRELYGASRVNSMGLDLSNEHRLASLSSALLASAHHPWRAAPMLADDALAHAAPRDVRNPADLRDVVGTVSEATPDEVSAALAHAVAAAPIWQATPVDARADCLARAADLLEAQMHTLMGLIVREAGKSLPNAIAEIREAVDFLRYYSAQIRDEFSNDTHRPLGPVVCISPWNFPLAIFMGQVAAALAAGNTVLAKPAEQTPLIAAQAVRLLRDAGVPAGAVQLLPGNGETVGAALVADPRTRAVMFTGSTEVARLINKTLSSRLDPDGRPIPLIAETGGQNAMIVDSSALAEQVVADVLQSSFDSAGQRCSALRVLCLQDDVADRTLTMLKGAMRELALGNPDRLSVDVGPVIDADAKRTIDTHIAAMKDKGHAVTQLEMPDACAQGTFVPPTIIEIGNVDELKREVFGPVLHVVRYRRSGLDKLLEQIRATGYGLTLGIHTRIDETIAHVISRAHVGNIYVNRNVIGAVVGVQPFGGEGLSGTGPKAGGALYLQRLLATRPAGLPRSLEAALVADAPQEGETRDNPSAALTALRDWLIEQREPALAARCDGYLSHVLAGATAVLSGPTGERNTYTLGARGTVLCIAATASGARAQFAAALATGNRALFAGAAGEALAAALPAQLKAHAGVRKQADAAFDAVLFEGDSDELLALVKEVAQRPGPIVSVQGVAAGAFENGGDEDYALERLLTERSVSVNTAAAGGNANLMTIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012576_2	2.1\|461760\|26\|NZ_CP012576\|CRT	461760-461785	26	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	73538-73563	4	0.846
NZ_CP012576_2	2.1\|461760\|26\|NZ_CP012576\|CRT	461760-461785	26	NZ_CP021819	Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence	306425-306450	4	0.846
NZ_CP012576_2	2.1\|461760\|26\|NZ_CP012576\|CRT	461760-461785	26	NZ_CP024427	Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence	79159-79184	5	0.808
NZ_CP012576_2	2.1\|461760\|26\|NZ_CP012576\|CRT	461760-461785	26	NZ_CP020443	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence	89074-89099	5	0.808
NZ_CP012576_2	2.1\|461760\|26\|NZ_CP012576\|CRT	461760-461785	26	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	216447-216472	5	0.808
NZ_CP012576_2	2.1\|461760\|26\|NZ_CP012576\|CRT	461760-461785	26	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	459201-459226	5	0.808
NZ_CP012576_2	2.1\|461760\|26\|NZ_CP012576\|CRT	461760-461785	26	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1003771-1003796	5	0.808
NZ_CP012576_2	2.2\|461806\|27\|NZ_CP012576\|CRT	461806-461832	27	NZ_CP030128	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence	119428-119454	5	0.815
NZ_CP012576_2	2.3\|461853\|26\|NZ_CP012576\|CRT	461853-461878	26	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	216447-216472	5	0.808
NZ_CP012576_2	2.3\|461853\|26\|NZ_CP012576\|CRT	461853-461878	26	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	459201-459226	5	0.808
NZ_CP012576_2	2.3\|461853\|26\|NZ_CP012576\|CRT	461853-461878	26	NZ_CP024427	Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence	79159-79184	5	0.808
NZ_CP012576_2	2.3\|461853\|26\|NZ_CP012576\|CRT	461853-461878	26	NZ_CP020443	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence	89074-89099	5	0.808
NZ_CP012576_2	2.4\|461899\|27\|NZ_CP012576\|CRT	461899-461925	27	NZ_CP030128	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence	119428-119454	5	0.815
NZ_CP012576_2	2.5\|461946\|26\|NZ_CP012576\|CRT	461946-461971	26	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	216447-216472	5	0.808
NZ_CP012576_2	2.5\|461946\|26\|NZ_CP012576\|CRT	461946-461971	26	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	459201-459226	5	0.808
NZ_CP012576_2	2.5\|461946\|26\|NZ_CP012576\|CRT	461946-461971	26	NZ_CP024427	Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence	79159-79184	5	0.808
NZ_CP012576_2	2.5\|461946\|26\|NZ_CP012576\|CRT	461946-461971	26	NZ_CP020443	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence	89074-89099	5	0.808
NZ_CP012576_2	2.6\|461992\|27\|NZ_CP012576\|CRT	461992-462018	27	NZ_CP030128	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence	119428-119454	5	0.815
NZ_CP012576_2	2.3\|461853\|26\|NZ_CP012576\|CRT	461853-461878	26	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2977319-2977344	6	0.769
NZ_CP012576_2	2.5\|461946\|26\|NZ_CP012576\|CRT	461946-461971	26	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2977319-2977344	6	0.769

1. spacer 2.1|461760|26|NZ_CP012576|CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 4, identity: 0.846

cggtcgaccgccgcggggccagagta	CRISPR spacer
cggtcgaccgcatcggggccagaaca	Protospacer
***********  **********..*

2. spacer 2.1|461760|26|NZ_CP012576|CRT matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 4, identity: 0.846

cggtcgaccgccgcggggccagagta	CRISPR spacer
cggtcgaccgcatcggggccagaaca	Protospacer
***********  **********..*

3. spacer 2.1|461760|26|NZ_CP012576|CRT matches to NZ_CP024427 (Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence) position: , mismatch: 5, identity: 0.808

cggtcgaccgccgcggggccagagta	CRISPR spacer
ctttcgcccgccgcggggccagaggg	Protospacer
*  *** ***************** .

4. spacer 2.1|461760|26|NZ_CP012576|CRT matches to NZ_CP020443 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.808

cggtcgaccgccgcggggccagagta	CRISPR spacer
ctttcgcccgccgcggggccagaggg	Protospacer
*  *** ***************** .

5. spacer 2.1|461760|26|NZ_CP012576|CRT matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

cggtcgaccgccgcggggccagagta	CRISPR spacer
ctttcgcccgccgcggggccagaggg	Protospacer
*  *** ***************** .

6. spacer 2.1|461760|26|NZ_CP012576|CRT matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 5, identity: 0.808

cggtcgaccgccgcggggccagagta	CRISPR spacer
ctttcgcccgccgcggggccagaggg	Protospacer
*  *** ***************** .

7. spacer 2.1|461760|26|NZ_CP012576|CRT matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 5, identity: 0.808

cggtcgaccgccgcggggccagagta	CRISPR spacer
ttgtcgaccgtcgcggtgccagagtt	Protospacer
. ********.***** ********

8. spacer 2.2|461806|27|NZ_CP012576|CRT matches to NZ_CP030128 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.815

tggccgaccacggcatgggatcggagt	CRISPR spacer
cggccgaccgcggcctgggatcgggtt	Protospacer
.********.**** *********. *

9. spacer 2.3|461853|26|NZ_CP012576|CRT matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

cgatcgaccgccgcggggccagagta	CRISPR spacer
ctttcgcccgccgcggggccagaggg	Protospacer
*  *** ***************** .

10. spacer 2.3|461853|26|NZ_CP012576|CRT matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 5, identity: 0.808

cgatcgaccgccgcggggccagagta	CRISPR spacer
ctttcgcccgccgcggggccagaggg	Protospacer
*  *** ***************** .

11. spacer 2.3|461853|26|NZ_CP012576|CRT matches to NZ_CP024427 (Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence) position: , mismatch: 5, identity: 0.808

cgatcgaccgccgcggggccagagta	CRISPR spacer
ctttcgcccgccgcggggccagaggg	Protospacer
*  *** ***************** .

12. spacer 2.3|461853|26|NZ_CP012576|CRT matches to NZ_CP020443 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.808

cgatcgaccgccgcggggccagagta	CRISPR spacer
ctttcgcccgccgcggggccagaggg	Protospacer
*  *** ***************** .

13. spacer 2.4|461899|27|NZ_CP012576|CRT matches to NZ_CP030128 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.815

tggccgaccacggcatgggatcggagt	CRISPR spacer
cggccgaccgcggcctgggatcgggtt	Protospacer
.********.**** *********. *

14. spacer 2.5|461946|26|NZ_CP012576|CRT matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

cgatcgaccgccgcggggccagagta	CRISPR spacer
ctttcgcccgccgcggggccagaggg	Protospacer
*  *** ***************** .

15. spacer 2.5|461946|26|NZ_CP012576|CRT matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 5, identity: 0.808

cgatcgaccgccgcggggccagagta	CRISPR spacer
ctttcgcccgccgcggggccagaggg	Protospacer
*  *** ***************** .

16. spacer 2.5|461946|26|NZ_CP012576|CRT matches to NZ_CP024427 (Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence) position: , mismatch: 5, identity: 0.808

cgatcgaccgccgcggggccagagta	CRISPR spacer
ctttcgcccgccgcggggccagaggg	Protospacer
*  *** ***************** .

17. spacer 2.5|461946|26|NZ_CP012576|CRT matches to NZ_CP020443 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.808

cgatcgaccgccgcggggccagagta	CRISPR spacer
ctttcgcccgccgcggggccagaggg	Protospacer
*  *** ***************** .

18. spacer 2.6|461992|27|NZ_CP012576|CRT matches to NZ_CP030128 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.815

tggccgaccacggcatgggatcggagt	CRISPR spacer
cggccgaccgcggcctgggatcgggtt	Protospacer
.********.**** *********. *

19. spacer 2.3|461853|26|NZ_CP012576|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.769

cgatcgaccgccgcggggccagagta	CRISPR spacer
tgatcgaccgcagcggggccagtccg	Protospacer
.********** **********  ..

20. spacer 2.5|461946|26|NZ_CP012576|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.769

cgatcgaccgccgcggggccagagta	CRISPR spacer
tgatcgaccgcagcggggccagtccg	Protospacer
.********** **********  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

202989 : 279290

Burkholderia_phage(60.38%)

tail,holin,head,terminase,portal,plate,tRNA,capsid,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004203414.1\|202989_203526_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_004523084.1\|203535_204879_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	5.3e-39	28.4
WP_004198315.1\|205296_205839_-	response regulator transcription factor	NA	NA	NA	NA
WP_004525866.1\|205858_207139_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_004198312.1\|207156_207408_-	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_004200214.1\|207732_208632_+	acetylglutamate kinase	NA	NA	NA	NA
WP_009951681.1\|208628_209432_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_004525865.1\|209398_210091_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_004545672.1\|210439_211585_+	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_004545692.1\|211581_212196_+	methionine biosynthesis protein MetW	NA	NA	NA	NA
WP_004523086.1\|212207_213521_+	AmpG family muropeptide MFS transporter	NA	NA	NA	NA
WP_038800902.1\|213606_214563_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_004531039.1\|214936_215881_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004525861.1\|216092_217157_+	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.3e-80	45.8
WP_004190029.1\|217488_218259_-	exodeoxyribonuclease III	R4TWA8	Phaeocystis_globosa_virus	3.4e-30	33.8
WP_004523089.1\|218290_219130_-	polyphosphate kinase	NA	NA	NA	NA
WP_004523090.1\|219256_220729_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_004525859.1\|220731_222222_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_004189769.1\|222334_222634_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_004189550.1\|222999_224043_+	rod shape-determining protein	NA	NA	NA	NA
WP_004189331.1\|224162_225236_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_004523092.1\|225232_225745_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_004525858.1\|225928_228340_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_004537749.1\|228351_229500_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_004523094.1\|229814_230591_-	sel1 repeat family protein	NA	NA	NA	NA
WP_004189570.1\|230587_231373_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA
WP_009969946.1\|231365_231698_+	hypothetical protein	NA	NA	NA	NA
WP_004189793.1\|231794_232247_-	6-carboxytetrahydropterin synthase QueD	A0A088FAL2	Vibrio_phage	7.6e-14	30.8
WP_004534354.1\|232266_232899_-	7-carboxy-7-deazaguanine synthase	R4TAH8	Halovirus	7.3e-07	31.5
WP_004190026.1\|232992_233727_-	7-cyano-7-deazaguanine synthase QueC	A0A1B0Z0B4	Vibrio_phage	1.6e-50	42.5
WP_009941464.1\|233723_234014_-	hypothetical protein	NA	NA	NA	NA
WP_052140751.1\|234595_235513_+	STAS domain-containing protein	NA	NA	NA	NA
WP_038726679.1\|235506_235803_+	STAS-like domain-containing protein	NA	NA	NA	NA
WP_133670264.1\|235912_236197_-	hypothetical protein	A0A1S5NRP7	Burkholderia_phage	2.3e-32	67.4
WP_011852337.1\|236777_237050_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	2.4e-47	98.9
WP_004524431.1\|237009_237282_-	BrnT family toxin	K4NX81	Burkholderia_phage	1.0e-45	100.0
WP_015985030.1\|237388_238444_-\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	6.8e-207	100.0
WP_053565648.1\|238440_240210_-\|terminase	terminase ATPase subunit family protein	A4JWU9	Burkholderia_virus	0.0e+00	99.5
WP_053565564.1\|240353_241163_+\|capsid	GPO family capsid scaffolding protein	K4PAW2	Burkholderia_phage	7.4e-145	98.1
WP_004531048.1\|241196_242210_+\|capsid	phage major capsid protein, P2 family	K4NZP8	Burkholderia_phage	7.2e-190	100.0
WP_053565565.1\|242206_242896_+\|terminase	terminase endonuclease subunit	K4NX86	Burkholderia_phage	6.1e-116	99.1
WP_009979065.1\|242995_243475_+\|head	head completion/stabilization protein	K4NZV5	Burkholderia_phage	1.3e-80	99.4
WP_004552636.1\|243474_243726_+	hypothetical protein	K4NXI9	Burkholderia_phage	8.4e-39	98.8
WP_004524438.1\|243722_243929_+\|tail	tail protein	K4PAW7	Burkholderia_phage	2.4e-31	100.0
WP_004524439.1\|243943_244288_+	membrane protein	K4NZQ3	Burkholderia_phage	2.9e-50	100.0
WP_004524440.1\|244289_244562_+\|holin	phage holin family protein	K4NX91	Burkholderia_phage	8.8e-42	100.0
WP_009941345.1\|244558_245371_+	DUF3380 domain-containing protein	A4JWZ0	Burkholderia_virus	1.2e-150	100.0
WP_009941344.1\|245367_245808_+	hypothetical protein	K4NXJ2	Burkholderia_phage	2.5e-70	99.3
WP_004531054.1\|245912_246329_+\|tail	phage tail protein	A4JWT7	Burkholderia_virus	3.3e-72	100.0
WP_004531055.1\|246325_246793_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	1.2e-78	100.0
WP_009897040.1\|246919_247450_+	hypothetical protein	K4NX96	Burkholderia_phage	3.0e-94	100.0
WP_080361222.1\|247615_248491_-	site-specific DNA-methyltransferase	A4JWY5	Burkholderia_virus	2.3e-168	99.7
WP_009897036.1\|248565_249246_+\|plate	phage baseplate assembly protein V	A4JWT3	Burkholderia_virus	1.8e-123	100.0
WP_004531058.1\|249242_249605_+\|plate	bacteriophage baseplate assembly protein W	K4PAX6	Burkholderia_phage	1.7e-61	100.0
WP_004524450.1\|249601_250507_+\|plate	phage baseplate assembly protein	A4JWT1	Burkholderia_virus	3.6e-164	100.0
WP_009897027.1\|250499_251054_+\|tail	phage tail protein I	A4JWT0	Burkholderia_virus	3.8e-100	100.0
WP_076889865.1\|251055_253428_+\|tail	phage tail protein	Q45YG3	Burkholderia_virus	0.0e+00	99.4
WP_038738771.1\|253444_254116_+\|tail	tail assembly chaperone	A4JWS8	Burkholderia_virus	1.8e-112	96.4
WP_038734274.1\|254171_255344_+\|tail	phage tail sheath protein	A4JWS7	Burkholderia_virus	3.4e-223	99.7
WP_014696837.1\|255359_255869_+\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	3.2e-93	98.8
WP_004531064.1\|255926_256271_+\|tail	phage tail assembly protein	K4NXA3	Burkholderia_phage	1.0e-55	100.0
WP_004552648.1\|256279_256393_+\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	5.4e-14	100.0
WP_076852520.1\|256389_259356_+	hypothetical protein	A4JWX4	Burkholderia_virus	0.0e+00	99.9
WP_009935906.1\|259373_259799_+\|tail	phage tail protein	A4JWS2	Burkholderia_virus	3.3e-72	99.3
WP_053565567.1\|259798_260896_+	phage late control D family protein	A4JWS1	Burkholderia_virus	1.1e-199	97.8
WP_004524459.1\|260903_261404_-	hypothetical protein	NA	NA	NA	NA
WP_004524460.1\|261446_262196_-	phage-encoded membrane protein	E5E3P5	Burkholderia_phage	4.7e-53	43.1
WP_076852522.1\|262248_262752_-	helix-turn-helix transcriptional regulator	E5E3P4	Burkholderia_phage	5.4e-61	79.4
WP_011204750.1\|262832_263027_+	hypothetical protein	K4NZX7	Burkholderia_phage	1.6e-26	96.9
WP_004549900.1\|263030_263327_+	phage DNA-binding protein	E5E3P2	Burkholderia_phage	5.4e-37	84.3
WP_004549899.1\|263314_263563_+	ogr/Delta-like zinc finger family protein	K4PAZ0	Burkholderia_phage	3.0e-41	100.0
WP_004524465.1\|263648_264194_+	Bro-N domain-containing protein	K4NZS9	Burkholderia_phage	7.8e-98	100.0
WP_004549898.1\|264209_264428_+	hypothetical protein	K4NXB1	Burkholderia_phage	1.1e-34	100.0
WP_053565568.1\|264433_264631_+	hypothetical protein	K4NZY3	Burkholderia_phage	2.1e-29	98.5
WP_009935901.1\|264659_264869_+	phage-encoded membrane protein	K4NXL1	Burkholderia_phage	4.5e-30	100.0
WP_004524468.1\|264872_265112_+	hypothetical protein	K4PAZ5	Burkholderia_phage	2.0e-34	98.7
WP_004524469.1\|265280_265487_+	hypothetical protein	K4NZT3	Burkholderia_phage	2.7e-35	100.0
WP_009935900.1\|265480_265849_+	hypothetical protein	K4NXB4	Burkholderia_phage	2.3e-61	99.2
WP_004524471.1\|265845_266100_+	hypothetical protein	K4NZY7	Burkholderia_phage	4.5e-40	100.0
WP_004556610.1\|266111_268904_+	hypothetical protein	K4NXL6	Burkholderia_phage	0.0e+00	99.4
WP_071810932.1\|269595_269946_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004189647.1\|270973_271657_-	response regulator	NA	NA	NA	NA
WP_004523096.1\|271657_274066_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_004188929.1\|274067_274658_-	DUF4390 domain-containing protein	NA	NA	NA	NA
WP_004523097.1\|274654_276064_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_004189409.1\|276583_277441_-\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_004525854.1\|277550_278186_-	LysE family translocator	NA	NA	NA	NA
WP_004525853.1\|278306_279290_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.3e-07	38.0

DBSCAN-SWA_2

563424 : 570317

Burkholderia_virus(25.0%)

integrase

attL 551440:551454|attR 572175:572189

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
551440:551454	attL	NA	NA	NA	NA
WP_044362991.1\|563424_564168_+\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	1.6e-53	46.9
WP_009922658.1\|564547_564865_+	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	6.2e-15	57.0
WP_004530410.1\|564864_565782_+	hypothetical protein	A4PE40	Ralstonia_virus	4.0e-46	40.6
WP_009932250.1\|566035_566578_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	8.1e-47	55.8
WP_009932249.1\|566835_567288_+	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	2.3e-31	58.8
WP_004530408.1\|567287_568367_+	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	2.2e-160	99.0
WP_004525721.1\|568523_568772_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	4.0e-41	97.6
WP_076859550.1\|569615_570317_+	chitin-binding protein	A0A0K1Y848	Apis_mellifera_filamentous_virus	3.7e-07	30.5
572175:572189	attR	NA	NA	NA	NA

DBSCAN-SWA_3

793145 : 819268

Burkholderia_phage(57.14%)

tail,plate,integrase,protease

attL 793721:793763|attR 808821:808863

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004539219.1\|793145_793673_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	2.0e-21	51.0
793721:793763	attL	NA	NA	NA	NA
WP_009951133.1\|794080_794488_-	hypothetical protein	NA	NA	NA	NA
WP_009951134.1\|795378_796173_+	hypothetical protein	NA	NA	NA	NA
WP_131201363.1\|796227_796407_+	hypothetical protein	NA	NA	NA	NA
WP_080003239.1\|797043_798063_-	AAA family ATPase	NA	NA	NA	NA
WP_004547573.1\|798173_798389_-	hypothetical protein	NA	NA	NA	NA
WP_004547588.1\|798508_799474_-	hypothetical protein	NA	NA	NA	NA
WP_009951137.1\|799699_801286_+	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	5.5e-43	28.7
WP_009951139.1\|801275_802589_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_004547610.1\|802585_805717_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.9e-71	30.2
WP_009951141.1\|805801_806386_+	hypothetical protein	NA	NA	NA	NA
WP_004547608.1\|806470_806827_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024429085.1\|806807_807200_-	hypothetical protein	NA	NA	NA	NA
WP_004547612.1\|807215_808637_-\|integrase	integrase family protein	NA	NA	NA	NA
WP_004527844.1\|809472_809799_+\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	6.6e-52	98.1
808821:808863	attR	NA	NA	NA	NA
WP_004527843.1\|809791_810205_+\|tail	phage tail protein I	K4NXA0	Burkholderia_phage	8.0e-71	100.0
WP_004527842.1\|810102_810705_+	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	1.6e-80	87.9
WP_004527840.1\|811726_812092_-	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	2.5e-52	88.4
WP_004521948.1\|812193_812979_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004521949.1\|812975_814322_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521950.1\|814430_815045_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004531875.1\|815418_816090_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521952.1\|816126_816645_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004521953.1\|816661_818152_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004527837.1\|818224_818728_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011205263.1\|818755_819268_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_4

1149491 : 1158744

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004527678.1\|1149491_1151444_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2
WP_004522147.1\|1151710_1152841_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.7e-22	27.6
WP_014917873.1\|1152874_1154881_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	1.6e-52	34.8
WP_004194137.1\|1155072_1155888_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_004532195.1\|1155952_1156636_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_009971015.1\|1156632_1157160_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_014917872.1\|1157196_1158744_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2

DBSCAN-SWA_5

1494090 : 1502898

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004537711.1\|1494090_1495491_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.2e-79	38.5
WP_009921652.1\|1495522_1496446_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004190173.1\|1496504_1497497_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_004189725.1\|1497568_1497886_+	competence protein ComE	NA	NA	NA	NA
WP_004550116.1\|1498210_1499113_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	3.3e-53	39.9
WP_076853526.1\|1499339_1500662_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_038715031.1\|1500789_1501713_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	2.4e-43	36.2
WP_038715033.1\|1502055_1502898_-	alpha/beta hydrolase	A7XCB7	Tanapox_virus	2.7e-17	26.6

DBSCAN-SWA_6

2017609 : 2022088

Burkholderia_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076811937.1\|2017609_2017873_+	hypothetical protein	Q8W6S4	Burkholderia_virus	5.0e-26	85.5
WP_076804729.1\|2018057_2018369_-	hypothetical protein	A4PE26	Ralstonia_virus	4.5e-26	60.2
WP_038763587.1\|2018789_2019392_-	hypothetical protein	NA	NA	NA	NA
WP_004527237.1\|2019733_2020240_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	5.1e-19	40.1
WP_004527236.1\|2020236_2020662_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.8e-15	49.4
WP_009937072.1\|2020942_2021338_-	hypothetical protein	NA	NA	NA	NA
WP_004531416.1\|2021591_2021819_+	hypothetical protein	Q8W6S4	Burkholderia_virus	3.8e-22	75.8
WP_004527234.1\|2021854_2022088_-	hypothetical protein	A4PE26	Ralstonia_virus	4.3e-13	60.6

DBSCAN-SWA_7

2887381 : 2893355

Burkholderia_virus(28.57%)

integrase

attL 2875092:2875106|attR 2900942:2900956

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2875092:2875106	attL	NA	NA	NA	NA
WP_004526711.1\|2887381_2887804_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	8.3e-15	47.0
WP_076849822.1\|2887800_2888310_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	3.9e-19	39.4
WP_004531127.1\|2888302_2888776_+	hypothetical protein	NA	NA	NA	NA
WP_076831547.1\|2888810_2889254_+	hypothetical protein	NA	NA	NA	NA
WP_076867396.1\|2889619_2889958_+	hypothetical protein	A4PE26	Ralstonia_virus	3.2e-25	57.1
WP_009941993.1\|2889978_2890185_-	hypothetical protein	Q8W6S4	Burkholderia_virus	3.7e-16	86.7
WP_071810706.1\|2890135_2890564_+\|integrase	tyrosine-type recombinase/integrase	A0A1S5NNJ1	Burkholderia_phage	4.6e-21	47.4
WP_038715415.1\|2890737_2891757_+\|integrase	site-specific integrase	A0A0A1I5U0	Burkholderia_phage	2.1e-48	38.2
WP_038715417.1\|2891791_2892262_-	hypothetical protein	NA	NA	NA	NA
WP_076853128.1\|2892515_2892737_+	DNA-binding protein	NA	NA	NA	NA
WP_076853114.1\|2893085_2893355_-	CopG family transcriptional regulator	A0A0A8JBA5	Ralstonia_phage	5.3e-23	58.6
2900942:2900956	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3450071 : 3461026

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004196461.1\|3450071_3452372_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1
WP_004194131.1\|3452368_3452683_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196460.1\|3453215_3453419_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_004536101.1\|3453548_3455159_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_004189626.1\|3455171_3455354_+	hypothetical protein	NA	NA	NA	NA
WP_004189552.1\|3455326_3456586_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004189780.1\|3456853_3457432_+	pseudouridine synthase	NA	NA	NA	NA
WP_071810810.1\|3457694_3457913_+	hypothetical protein	NA	NA	NA	NA
WP_004526282.1\|3458104_3458614_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	4.2e-13	42.2
WP_004197486.1\|3458911_3461026_+	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012577

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP012576

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection