CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012608	Acinetobacter sp. TTH0-4 chromosome, complete genome	3 crisprs	DEDDh,csa3,cas3	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012608_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012608_1

1927138-1927232

Orphan

Consensus_repeat	Method
TGTCGATAGCATAAACATGATTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012608_1

>merge|NZ_CP012608|1|1927138-1927232|CRISPRCasFinder
TGTCGATAGCATAAACATGATTAGGGTGTCATGTCGATAAAAATTGGAAAAATCGACATGACATGTAATATGTGTCGATAGCATAAACATGATTA

>NZ_CP012608|1|1|1927138-1927232|CRISPRCasFinder
TGTCGATAGCATAAACATGATTA	GGGTGTCATGTCGATAAAAATTGGAAAAATCGACATGACATGTAATATG
TGTCGATAGCATAAACATGATTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012608.1\|WP_171250320.1\|1914855_1915449_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|136097
NZ_CP012608.1\|WP_171250367.1\|1918375_1919683_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225459
NZ_CP012608.1\|WP_053579318.1\|1920805_1921033_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176249
NZ_CP012608.1\|WP_053579322.1\|1928643_1928829_-\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|379139
NZ_CP012608.1\|WP_053579314.1\|1916136_1916700_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
NZ_CP012608.1\|WP_053579325.1\|1932192_1933290_+\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|366523
NZ_CP012608.1\|WP_053579321.1\|1925939_1927070_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP012608.1\|WP_053579313.1\|1915580_1915922_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012608.1\|WP_053579319.1\|1921346_1922408_-\|asparaginase	unknown	unknown	gnl\|CDD\|199208
NZ_CP012608.1\|WP_053580289.1\|1933357_1933603_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012608.1\|WP_053579327.1\|1934832_1935444_+\|sterol-desaturase-family-protein	unknown	unknown	unknown
NZ_CP012608.1\|WP_053579328.1\|1935729_1936488_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	unknown	unknown	gnl\|CDD\|234996
NZ_CP012608.1\|WP_053579317.1\|1919688_1920519_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
NZ_CP012608.1\|WP_155857469.1\|1927428_1928558_-\|IS3-like-element-ISAcsp5-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP012608.1\|WP_009391568.1\|1913910_1914501_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP012608.1\|WP_053579324.1\|1931196_1931937_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
NZ_CP012608.1\|WP_053579326.1\|1933722_1934730_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP012608.1\|WP_053579315.1\|1916887_1917763_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP012608.1\|WP_053579329.1\|1936601_1937552_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|235369
NZ_CP012608.1\|WP_053579323.1\|1929224_1931105_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700

Protein	Function_ID	Function_description	E-value
NZ_CP012608.1\|WP_171250320.1\|1914855_1915449_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|136097	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional.	9.85812e-55
NZ_CP012608.1\|WP_171250367.1\|1918375_1919683_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|225459	COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only].	3.89433e-31
NZ_CP012608.1\|WP_053579318.1\|1920805_1921033_-\|hypothetical-protein	gnl\|CDD\|176249	cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	3.57978e-05
NZ_CP012608.1\|WP_053579322.1\|1928643_1928829_-\|DUF4102-domain-containing-protein	gnl\|CDD\|379139	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain. This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins.	2.87221e-18
NZ_CP012608.1\|WP_053579314.1\|1916136_1916700_+\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.01569e-131
NZ_CP012608.1\|WP_053579325.1\|1932192_1933290_+\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|366523	pfam01223, Endonuclease_NS, DNA/RNA non-specific endonuclease.	4.83811e-43
NZ_CP012608.1\|WP_053579321.1\|1925939_1927070_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.11361e-55
NZ_CP012608.1\|WP_053579319.1\|1921346_1922408_-\|asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	3.06759e-128
NZ_CP012608.1\|WP_053579328.1\|1935729_1936488_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	2.20603e-174
NZ_CP012608.1\|WP_053579317.1\|1919688_1920519_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	8.78282e-06
NZ_CP012608.1\|WP_155857469.1\|1927428_1928558_-\|IS3-like-element-ISAcsp5-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.03973e-44
NZ_CP012608.1\|WP_009391568.1\|1913910_1914501_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.55268e-10
NZ_CP012608.1\|WP_053579324.1\|1931196_1931937_-\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0.00077725
NZ_CP012608.1\|WP_053579326.1\|1933722_1934730_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.10564e-22
NZ_CP012608.1\|WP_053579315.1\|1916887_1917763_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	4.0648e-76
NZ_CP012608.1\|WP_053579329.1\|1936601_1937552_+\|homoserine-kinase	gnl\|CDD\|235369	PRK05231, PRK05231, homoserine kinase; Provisional.	1.6279e-119
NZ_CP012608.1\|WP_053579323.1\|1929224_1931105_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0

>NZ_CP012608.1|WP_053579321.1|1925939_1927070_-|Fic-family-protein
MAQWQATEPYNDLPSLPPEHDVETKVVLKLCIEARSALAELKQAGELIPNQTILINIIPLLEAKDSSEIENIVTTTDKLFQHAQGHDDQADHATKEALRYRTALYQGVQSIQERPLNTSTAIEICQMIKGVDLDIRATTGTALKNSYTGVVIYTPPVGQETIRNLLSNLDQFLHYNEDIDPLIKMAIAHYQFEAIHPFVDGNGRTGRILNILYLMDRQLLTLPILYLSRFIIQNKARYYELLLSVTTQGNWQEWILFMLQAVKNTSEWTIAKIKAIRQLHEHSIEYIKNHAEKIYSRELVDVIFEQPYCRIANLVEKDIAKRQAASTYLKKLVELGVLKEITVGKEKLFLHPKLLHLLTSDENQFSLYGTNKLNPT
>NZ_CP012608.1|WP_053579319.1|1921346_1922408_-|asparaginase
MMKNTLTALTLSLGLLLPFSAFAKNNVVVVATGGTIAGAGASSTNSATYTAAKVPVDDLLKAVPQIQNLANVTGVQALQVASESITDKELLTIARKVNELVKKPEINGVVITHGTDTLEETAFFLNLTVHTDKPIVVVGSMRPPSALSADGPLNLYSAVALAAADNAKGKGVFVLMNDDIFAARDVTKAVNIHTNGFASQWGALGTLVEGKPYWFRNVAKRFNNASEFNIENIQGDALPLVQIVYGSGNMIPDAYTAYAKAGAKAIIHAGTGNGSVAKNIVPTLNELQKQGVQIIRSSRVAQGFVLRNAEQPDDKYNWVVAHDLNPQKAKLLAALALTKTKDAKEIQRMFWEY
>NZ_CP012608.1|WP_053579318.1|1920805_1921033_-|hypothetical-protein
MNTSNNYVKQIKNAKRGGYTPTLAKDINKHKIQKAIRLIEQWRKLANELKPQMQIDMALTLEECAQDLDQILRKR
>NZ_CP012608.1|WP_053579317.1|1919688_1920519_+|class-I-SAM-dependent-methyltransferase
MQWLQAITQQLSQHKYAINAKQLGDHAELPWSNLGYWDDATSSYPEACRQLADHLAQALQLSSQDKLLDLGCGQGASLLFWQQYYHIEYIEAVELQAACVNKIQTYLPHIHAIHLQSFLNLNQISFNNHFDVVLCIDAAYHSNLNSFLDSVNTVLNLNARLGFHYLILSEKWFKLSSGQKQKYKWLLKAADIHLDYLMSQSEVIITIQNYGFKEIEIVDLSYEVLHGFSDYIQQSPQHTLNLDAVKIQMTAKLCRTLYTDGLIQYVQICAQKNLSE
>NZ_CP012608.1|WP_171250367.1|1918375_1919683_+|FAD-dependent-oxidoreductase
MITLDIAVIGSGMAGLATARILKDAGHSITIFEALPGRGMDSHSTEFEDGLIDAPLRVMNPHLWKNTLSLATYLGIQTFPVRTYMACSWLFEDRTETWLTTSRSRIGNFPIINNRKGIQQYGWRLVKGMLQLKTAIAKFFKSKDQDITLAEFINRNDIEEVFWHGAVMPVLYTICTCNPKTIGEWPAKPLLIFLRQLTDGDALLRIQGGTPALVDKLIEGIEIHNGAAITQVQEQEHGVLVANAAGEKRIFDRVIVATPTNKIEDFLDAQQFADDIALLKQFKFEQGKLVIHTDQTVMPPKRKDWAVLSYMMDRKFTRQQFTVWLNSVEPSLVGKTAVFQTWQPVTDIDPKKVISTVTLTRAVVDSHTVALNKELQQRHKDSNRKVFYCGSWSCDGLPILESAVTSAMHIAEIFKAPLPFVGLKPKVEVAPQLGY
>NZ_CP012608.1|WP_053579315.1|1916887_1917763_+|pirin-family-protein
MKKVVGIYRNQNMHWVGDGFPVKNLFSYDRLGQAISPFLLLDYAAPYHFSPTSTQRGVGSHPHRGFETVTLAYQGAVSHKDSSGGGGQIKSGDVQWMTAGAGLMHEEFHAEEFAQQGGLLEMVQFWVNLPAKDKMTPPKYQAIQAKDIPVIQFDENAGHLRIIAGEYRDHHGPASTFSAVNVWDGELKAGHLHPLHVPIDHNTLLVVLSGELLVNGTQKVQDSSIVLFAQDGESDIQLEATTDSQFVVLTGAPLNEPIQGYGPFVMNTKDEIVQAFNDFNQGKFGEIPVAG
>NZ_CP012608.1|WP_053579314.1|1916136_1916700_+|peroxiredoxin
MSLINTEIKPFTATAYQNGEFKDISEQNFQGQWSVVFFYPADFTFVCPTELGDLADNYAEFQKMGVEIYSVSTDTHFIHKAWHDSSDEIKKIQYPMIGDPTWTLAKNFEVLIEAEGLADRGTFVIDPEGKIQIIEVNAGGVGRDAQELLRKVKAAQYVHAHPGEVCPAKWKEGDATLAPSIDLIGKI
>NZ_CP012608.1|WP_053579313.1|1915580_1915922_-|hypothetical-protein
MKKTFQFLFEQFQALPSGSDSFKQLKNQCEQHIKTANSALEQSALFLIYGFAKNYVLLYEDQAVTAEFSRAAKTQLLNYMQQLNTALQTQDKALILDSLNHVTQHYMLSSRVF
>NZ_CP012608.1|WP_171250320.1|1914855_1915449_+|single-stranded-DNA-binding-protein
MDTAPYSKTNMSNVILVGTLGKDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEGSLRTRQWTDQSGQERYTTEIRGEQMQMLDSNNRQQSEQSADNGGYNQPRFNNNQGAANNSGYNNNQNNQGGFNNSQQSGYANNNPAAFQPKPQSAPAATAPSDLDDDLPF
>NZ_CP012608.1|WP_009391568.1|1913910_1914501_+|TetR/AcrR-family-transcriptional-regulator
MSLAAESELNTRQRLIFAVLDLLRTQGLAATSVREAAKHAQTPLGSTYHYFPDGKPQMVKEALLLSGNIALEQLDKALNQHGTRKGITAFIAWWGRIVQDSSFQAGCPLMSVLMEIGKDDEKVQYVETVKQVLNLWKQRLTQALEQDGISFEQATQVSLSIIASFEGAILLCRAWGNLTPFQAVTAQLDVMIKNLI
>NZ_CP012608.1|WP_155857469.1|1927428_1928558_-|IS3-like-element-ISAcsp5-family-transposase
MTRRKRRNHSAEFKVKVALAAIKGDHTLAELSTQFDLHQNQIIDWKNQLLEQSVNIFSRPTAQQEPEIDLKALHAKIGHQALQIGFFRRCAQKNRAAERQKMIDKTHQLSVRQQSQLIQINRSTLYYKSKEISSTDLSLMHLIDEIHLDYPFMGSRMIRDMLQRQGHQIGRRKVRRLMRLMGIHALYPKPNTSKPNLAHRIFPYLLKNMVIDHSNQVWCTDITYIPMAKGFVYLCAIIDWHSRKVLAHRVSISMETGFCIDALQEAIVKYGCPEVFNTDQGSQFTSEAFLNELKLRNIRISMDGKGRWMDNVMIERLWRSVKHEEVYLKAYDTVKQAKQSIAEYLDFYNMIRPHSSLNKATPDEFYDQHLLKVMAA
>NZ_CP012608.1|WP_053579322.1|1928643_1928829_-|DUF4102-domain-containing-protein
MLTDAKVRKIKPSEKKTKYPDEKSMYLEVTPSGGMHWRMKFRFNGKENIFSIGSYPETTLA
>NZ_CP012608.1|WP_053579323.1|1929224_1931105_+|potassium-transporter-Kup
MQSPAKKAALPVITLAALGVVFGDIGTSPLYALRQCFLTAHLAITEATVLGILSLIFWCMMLTISFKYVTIIMRADNNGEGGIMSLLALNLRTSRIAENKKIYLIALGFIGASLFFGDGIITPAISVLSAIEGLSIATPMFNQWLMPLAIGILAGLFLVQRHGTATMGKLFGPITMVWFLSIGAVGLWSIIQTPFVLTMVSPHWAFNFVVHQPYVAFLTMGAVILTMTGGEALYADMGHFGRLPIRLAWFIVVLPCLLINYAGQGALLLRNPEAIANPFYMLVPDWALFPMIGLATAAAVIASQAVITGVFSMTNQAIQLRYLPRLTVHHTSDVEQGQIYLPFINWVLFISVVILILLFENSANLASAYGVAVTMTMLCGTILISFLAYGFWRWPVWKVLLFAIPFLLLDAIFVASTSLKILAGGWVPILIGAAVYTILMTWKAGREIVLARLEKDALPIDLFIRSIGMSNETQFVPGAAIFLTGTPNIVPHAMLHNIKHNKVLHELNIMVTVITRDIPYVAEEERFEVEQLDQRFYRISMYYGFKDQPNIPLALERAYTQLGFEFDMMQMSFFISRDRLIHTVGDGLSPWREKLFISMQRNTSPVSDFYQIPPNRVVELGSQIEI
>NZ_CP012608.1|WP_053579324.1|1931196_1931937_-|hypothetical-protein
MHSKLLGLSLITGLMSATAFAEPPIQPGDTLESLSKVKVMTTVNGQAGSIQDLVASGQIRIVDANQVASASTQNTSEAVSPASMMQAPMQQATPEQQDVNSTAQMIEAPLDQSSDPAHAQAAAVAPENTPAIQPDAELAAQQAEQVVGQEVATQAAMPSTNNAPMLSSSAQTPVNAGDGTQTDVTAEAVAAAPVNEADINMDTEALAAAPELDQSSDAIQAAPEMPNTDAPVNASPEVPMADSTEN
>NZ_CP012608.1|WP_053579325.1|1932192_1933290_+|DNA/RNA-non-specific-endonuclease
MAVRKRKTKKSWVQYLNQNSLKIILGLVATSSFAIAFGQEKIQQLVTLPAVSNSACLDQFYRDIPPYLTKESLKKNSYPLCFNGFNVMYSGVSKTPLWVAEALTPKRLSQKIPREDSFHEELSIRPEHRATLSDYKASGYDRGHMAPNADMPNKAAQNDSFSLANMVPQAPKNNQQVWRELEEATRAIVTQHKYDVYVVTGPVFATKKLKTIGQGVIVPTAVFKAIYIPKTGAIGAYYAPNDHSLQVKVVSVCYLEEQLGINVFPQLTEEQKRNTYNLPLKANAVKVNKTIAYSHWDAESQCAEDVNADALTAVQKDFKSSSAGSQTTSTTETKNTTSSLDSDSQNAVARQLVDALLQYILQTLK
>NZ_CP012608.1|WP_053580289.1|1933357_1933603_+|hypothetical-protein
MFKPFENGHESHAIHDLTLENQQDYVSLYGNLQITKDKSGLETARVLQAFLSDIVAVLENDAHLPEKIRIQAEQEIENPFL
>NZ_CP012608.1|WP_053579326.1|1933722_1934730_-|AraC-family-transcriptional-regulator
MQSLKDYTGSVYGGLGHLLYAYSQAKGLVISEKLEQVQNLERFDYSIWRDLLTDIQQQIDVPALGLDIADYVQPKHLGIIAYIALSCTTLGEALHRYHDLHRLVYDGSSLQVNMQDDYLMIGWGDIPFHLTTQVTNEIAIALMIKFLYLFMEFDSIYVYEIHFTHPAPPNIALYEQYFHCKVRFSQPVAQIVLPIQELAKPFRQGDQTLHHLLMQQAQALLDKLPNSTTLDHRLQQAILTGLQKNLYQIEPISRQLGMSIRQLQRHLQQQDTTYQNRVQEVRHLLAEQYLKDPHLSLLEIALLLSYSEQSAFQRAFKHWTGLTPQQWRKQRHTSP
>NZ_CP012608.1|WP_053579327.1|1934832_1935444_+|sterol-desaturase-family-protein
MLKGFLVGLVVANGFEWVAHKYVLHGTHRTGKPRYSPVPDSMKSHWEHHREVRKTTFLDHGYVEGISNWRTKNEIVSLAVVATVAGGLFYPVSKGMAAAAVYSACNYYYIHRRAHLEPEWAMKKIPWHYDHHMNSNQDANWCVTKPWFDYILGTRVISSEDLQEQNPLGIALPQSVSKILNSVASSYFPAKWVSKVPQLETHM
>NZ_CP012608.1|WP_053579328.1|1935729_1936488_-|imidazole-glycerol-phosphate-synthase-subunit-HisF
MLAKRIIPCLDVDNGRVVKGVQFLDIRDAGDPVEVARRYNEQGADEITFLDITATSGERDTTYRTVERMAESVFVPLTVGGGVRKVEDIRLLLNAGADKVSINSAAVFNPEFVQQASQRFGAQCIVVAIDAKKTGENKWEIFTHGGRRPTGIDAIEWAVKMADFGAGELLITSMDADGTKAGYDLKLMRQINDRVTIPTIASGGVGCLQHLADGILVGGADAVLAASIFHFGQHSIPEAKQYLANQGIEMRL
>NZ_CP012608.1|WP_053579329.1|1936601_1937552_+|homoserine-kinase
MSVYTPLTLNEVQVFATPYGLEVIDLIPIQGGIQNTNYFLVCNTGEHYVLTIFEELDEQGAAELVPVLEHLGKSGLPVPVPLNYAGKAIHILKNKPAQIAPRMRGKHPMPSTVAQVQAIAIAQAQIHLALQDFPLQRTEDRNHDYWLHVAKELKPTLNLADAILLSEVLGLYDALTSVYPNRPKGFIHADLFRDNTLFVDNQLHGILDFYELNKDEFLFDIAITLNDFCTEYPDVHLNEVNAQAFLEAYETVRRLTEDEKACLEIYLAITAARFWLMRLQVAQKNAQQERTGEDILQKNPEEMRKMLVERLKFVTA

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Crispr_ID: NZ_CP012608_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012608_2

2126694-2126778

Unclear

Consensus_repeat	Method
CCAGCGCCACGTCGTGAAGGTGGTT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP012608_2

>merge|NZ_CP012608|2|2126694-2126778|CRISPRCasFinder
CCAGCGCCACGTCGTGAAGGTGGTTATGGTGATCGTCCACAACGTTCATTTGATGACCGTCCAGCGCCACGTCGTGAAGGTGGTT

>NZ_CP012608|2|2|2126694-2126778|CRISPRCasFinder
CCAGCGCCACGTCGTGAAGGTGGTT	ATGGTGATCGTCCACAACGTTCATTTGATGACCGT
CCAGCGCCACGTCGTGAAGGTGGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012608.1\|WP_053579491.1\|2133923_2135969_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP012608.1\|WP_053579476.1\|2118021_2118810_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP012608.1\|WP_053579484.1\|2128321_2129098_+\|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE	unknown	unknown	gnl\|CDD\|223838
NZ_CP012608.1\|WP_053579474.1\|2114096_2115251_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP012608.1\|WP_053579480.1\|2121489_2123400_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP012608.1\|WP_053579489.1\|2132600_2133008_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240046
NZ_CP012608.1\|WP_053579483.1\|2127509_2128325_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213228
NZ_CP012608.1\|WP_053579487.1\|2130433_2130724_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|379202
NZ_CP012608.1\|WP_053579479.1\|2120577_2121180_-\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|234745
NZ_CP012608.1\|WP_053580295.1\|2132007_2132598_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|129813
NZ_CP012608.1\|WP_081405757.1\|2118963_2119170_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012608.1\|WP_053579481.1\|2123512_2124343_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP012608.1\|WP_053579485.1\|2129097_2129766_+\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	unknown	unknown	gnl\|CDD\|275223
NZ_CP012608.1\|WP_053579473.1\|2113510_2113972_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP012608.1\|WP_053579488.1\|2130839_2131853_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|213369
NZ_CP012608.1\|WP_053579475.1\|2115592_2117416_-\|acyl-CoA-dehydrogenase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|185635
NZ_CP012608.1\|WP_053579478.1\|2119508_2120450_-\|oxygen-dependent-coproporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|235413
NZ_CP012608.1\|WP_053579472.1\|2112110_2113472_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240536
NZ_CP012608.1\|WP_053579490.1\|2133027_2133660_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP012608.1\|WP_171250375.1\|2129833_2130418_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|377516

Protein	Function_ID	Function_description	E-value
NZ_CP012608.1\|WP_053579491.1\|2133923_2135969_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP012608.1\|WP_053579479.1\|2120577_2121180_-\|GTP-cyclohydrolase-II	gnl\|CDD\|234745	PRK00393, ribA, GTP cyclohydrolase II RibA.	1.07535e-118
NZ_CP012608.1\|WP_053579484.1\|2128321_2129098_+\|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	2.0659e-86
NZ_CP012608.1\|WP_053579480.1\|2121489_2123400_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP012608.1\|WP_053579489.1\|2132600_2133008_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240046	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	6.23865e-37
NZ_CP012608.1\|WP_053579483.1\|2127509_2128325_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213228	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	8.44292e-138
NZ_CP012608.1\|WP_053579487.1\|2130433_2130724_+\|STAS-domain-containing-protein	gnl\|CDD\|379202	pfam13466, STAS_2, STAS domain. The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.	1.19465e-07
NZ_CP012608.1\|WP_053579476.1\|2118021_2118810_-\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	3.6069e-109
NZ_CP012608.1\|WP_053580295.1\|2132007_2132598_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|129813	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. [Hypothetical proteins, Conserved].	7.52509e-62
NZ_CP012608.1\|WP_053579474.1\|2114096_2115251_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP012608.1\|WP_053579481.1\|2123512_2124343_+\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	5.79815e-109
NZ_CP012608.1\|WP_053579485.1\|2129097_2129766_+\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	gnl\|CDD\|275223	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD. Members of this protein family are the MlaD (maintenance of Lipid Asymmetry D) protein of an ABC transport system that seems to remove phospholipid from the outer leaflet of the Gram-negative bacterial outer membrane (OM), leaving only lipopolysaccharide in the outer leaflet. The Mla locus has long been associated with toluene tolerance, consistent with the proposed role in retrograde transport of phospholipid and therefore with maintaining the integrity of the OM as a protective barrier.	2.04229e-47
NZ_CP012608.1\|WP_053579473.1\|2113510_2113972_-\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	6.04914e-36
NZ_CP012608.1\|WP_053579488.1\|2130839_2131853_-\|magnesium-transporter	gnl\|CDD\|213369	cd12835, EcCorA-like_1, Escherichia coli Mg2+ transporter CorA_like subgroup. A bacterial subgroup of the Escherichia coli CorA-Salmonella typhimurium ZntB_like (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Mg2+ transporters Escherichia coli CorA and Salmonella typhimurium CorA (which can also transport Co2+, and Ni2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.72448e-128
NZ_CP012608.1\|WP_053579475.1\|2115592_2117416_-\|acyl-CoA-dehydrogenase-C-terminal-domain-containing-protein	gnl\|CDD\|185635	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.	0
NZ_CP012608.1\|WP_053579478.1\|2119508_2120450_-\|oxygen-dependent-coproporphyrinogen-oxidase	gnl\|CDD\|235413	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase.	0
NZ_CP012608.1\|WP_053579472.1\|2112110_2113472_-\|MATE-family-efflux-transporter	gnl\|CDD\|240536	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.	3.38403e-158
NZ_CP012608.1\|WP_053579490.1\|2133027_2133660_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.59744e-31
NZ_CP012608.1\|WP_171250375.1\|2129833_2130418_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|377516	pfam05494, MlaC, MlaC protein. MlaC is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. This family of proteins is involved in toluene tolerance, which is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation. Many proteins are involved in these processes.	6.88427e-40

>NZ_CP012608.1|WP_053579481.1|2123512_2124343_+|inositol-monophosphatase
MEPMVVMAARAAQLVGQELLKAHQNRHKLDLQVEEKGIDGPVTRVDRYLEELTIATLKKSYKNHSFLGEEFGMQEGKGHDADWCWIIDPLDGTLNFINGVPHFCISIAVQHKGVTQHGVIYDPVKDELFSASRGRGAMMNQRRIRVNVKDSLENTFMAVGHAYRAQRNGEIISYAKNHFETLLNITDAGSQYRRTGSAALDLAYVAAGRFDGYFELGLKPWDIAAGELLVKEAGGTVVDARGGSDSMENGQVLACSMKMLKPLMRAVIPAWGDAAK
>NZ_CP012608.1|WP_053579480.1|2121489_2123400_+|1-deoxy-D-xylulose-5-phosphate-synthase
MLYTEIPTHRPITPLLDTIDHPQQLRLLERDQLEKVADELRQYILYAAGQSGGHFGANLGVIELTVALHYCFNTPHDRLIWDVGHQAYPHKALTGRREQLTTIRAKAGLAAFPTREESVFDTFGVGHSSTAISAGLGMALARRYLNDPCDVVAIIGDGAMTAGMAFEAMNDAVAHQADLMVVLNDNDMSISCSTGGFAKHLAAIWARGESVNISDAGEAYIQPHPEWLYNSRLHCAATDAADNLFKAIGFDYFGPFDGHDVVQLVQVFKALKKRKGPRLIHVYTKKGKGFIPAESDQIKYHAINKINSVTAVSTVPKYSDVFGQWLCDEAAQDKRLLAITPAMCEGSGMVQFSKQFPTRFFDVAIAEQHAVTLAAGMACEGLKPVVAIYSTFLQRGYDQLVHDVALQNLDVTFAIDRAGLVGEDGPTHAGAYDYAFMRTVPNIVIMAPKDENECRQMLHTGYLYNGPAAVRYPRGNGIGVQIQQQLTALDLGKAEIVLSLNEQHDEQISILAFGSRVSAAIEAAQALSLRHDVGVRVVNMRFIKPLDEVLISQLAESTNLFVTVEEHAVMAGAGSAVNEYLAQAQIVKPILNLGLADTFMHQASHAQMLEQAGLNAKGIEKSIELAWLKRAQTASL
>NZ_CP012608.1|WP_053579479.1|2120577_2121180_-|GTP-cyclohydrolase-II
MPIAFVATSRLPTAFGEFKITVFQDPETGEEHVALSKGLDTPPTGPVLVRIHSECLTGDAFASLKCDCGPQLQATQKIINEFGQGVILYLRQEGRGIGLTNKIRAYALQDQGHDTVDANLMLNLPADARSYDMCTIMLEHLKVKQVKLITNNPSKIEALKQLDIDVVDRVPLTVGLNPLNADYLKTKHERMSHMYKQDDF
>NZ_CP012608.1|WP_053579478.1|2119508_2120450_-|oxygen-dependent-coproporphyrinogen-oxidase
MQNPNSTDIQRVREFLLDLQTRICSALEQQELQSNSTAQFEIDDWQRPEGGGGRSRVLQNGAVIEKGGVMFSHINISKLPTSATERHPQIAGAKAQAMGVSLVIHPRNPHIPTSHANVRLFVAEPEGQEPIWWFGGGFDLTPFYADDADVLSWHQKAHDLCEPFGENVYSEHKKWCDDYFYLKHRDEQRGVGGLFFDDLNQWDFETCFKYIQAVGNGYLEAILPIFQRHQNQTYTQAQRDFQLYRRGRYVEYNLVYDRGTLFGLQTGGRIESILVSMPPLAAWSYRPAWDQDSAEKRLVDDYLKPRDWLNELK
>NZ_CP012608.1|WP_081405757.1|2118963_2119170_-|hypothetical-protein
MLNKILNHKVFLFWSILIMIVCSITITLSSENTLSDSLSITFSIFASFALFFTSVVLLEEMVHEICNP
>NZ_CP012608.1|WP_053579476.1|2118021_2118810_-|shikimate-dehydrogenase
MSKQFAVIGHPIEQSRSPELHQAFAQKTGIELSYTKRLAPLDGFEASMKAFFAAGGAGMNVTIPFKEQAFAECHVLTERAQIAKAVNTLWMQDGQLYGDNTDGQGLVDAIQALDWILENTSILIIGAGGATRGVIYPLVQAGVRNIVIANRTLARAEQLVADLREKVPEASLAAISLNGLKGNFDLVINATSASLSGDALILPENLHFKYAYEMAYGKPSSFLDQAKSRGIPTSEGYGMLVGQAIEAFYIWNGLKPSLKDFL
>NZ_CP012608.1|WP_053579475.1|2115592_2117416_-|acyl-CoA-dehydrogenase-C-terminal-domain-containing-protein
MPAYKTPLRDIRFLMNEVFDYPAHYKTLSNGESADADTVDMILEGAADFCENVLSPINQSGDEEGCHFENGVVTTPKGFKEAYKQFVEGGWQGLSYPEEFGGQGLPMSLNLVKSEMMGTANWSFTMYPGLSMGCMNTIMQFGTDEQKNTYMPHLTAGTWSGTMCLTEPQCGTDLGQVKSKAEPQADGTYKITGTKIFISAGEHDLTENIIHIVLARLPDAPAGTRGISLFIVPKFLPTADGGVGERNPVSCGSIEHKMGIRASATAVLNFDAATGYLIGEVNKGLHAMFTFMNTARIGTAVQGIAHAELAFQGSLPYAKERMSMRALSGKKDPEQVADAIIHHADVRRMLLTQKAIAEGGRAMIYHAAQLADKMADALSQGDQAKFEDYDDKLGFYTPILKGFLTELGLEAANHGMQVFGGHGYIKEHGMEQIARDARIATLYEGTTGVQALDLIGRKVLLSSKGKVVRDYTAEILRFCAQHATNKYMRRFAWDLTKICAQWNALTVRIMLAARKDRDIVSSASVDFLMFSGYAMMAFYWAQQAAVASEKLASGTGAETPEFYKAKIKVADFYFERLLPRSQGHAESMVNPSRTMMSLDAEHFSFDY
>NZ_CP012608.1|WP_053579474.1|2114096_2115251_+|radical-SAM-family-heme-chaperone-HemW
MAELNPALVPLSLYIHMPWCVRKCPYCDFNSHAVPDGKLSLDLEHEYLQALVADFKTQVDFAQGRQIHSVFIGGGTPSLISAKGYVWLFNQLKNMIAFENDCEITLEANPGTVEHDPFAGYLAAGINRLSIGVQSFNTEHLQKLGRIHSNQDAVSAIHLAREAGFKRINVDLMHGLPEQSVEQALYDLKMAVEHGATHVSWYQLTIEPNTVFFRTQPILPTDDVLEEIQIQGEAYLKAHGFVNYEVSAWRKERPSVHNLNYWQFGDYLAIGAGAHGKVTQPNGVYRFQKTRLPKDYLAKVPAEHIQFKRIEADEMPFEFMMNALRLNQGVDAQLYAERTGLSLDRLDELLNSLRSRKLMVEDKARISCTEQGHVFLNSVLDHFL
>NZ_CP012608.1|WP_053579473.1|2113510_2113972_-|DMT-family-transporter
MMKISSQLLFFLPLAMGIGIAMSLQNALNTQLREYLHSPLQAALLSFLVGTIVLALLVFFQSVEKPTLNTLIQIPWFLWLGGFLGVYAISLSIYAVPKLGFLTLTGVVIFGQISMSMLLDHFGWFGTEKTPIHWQRLLGSIVIFIGVFLTLQR
>NZ_CP012608.1|WP_053579472.1|2112110_2113472_-|MATE-family-efflux-transporter
MSNVTALTTTHRFELKKLFHLMIPILVTQFSQAGLGLIDTIMAGHLSPTDLAAIAVGVGLWIPIMLLFSGIMIATTPLVAEANGARTPEKIATIVRQSLWVAFILGVIAGLILQVMPFLLPILGVPAALLPKSSLFLHAIGFGMPAVTMYAALRGYSEALGYPRPVTAISLAALLVLIPLNFIFMYGWGPIPELGSAGCGFATAILQWIMLLVLATYIFKGKAYRKTQVFAAWEKIDLYWVKRILQLGLPIGLAIFFEVSIFSTAAIVLSPLGETLVAAHQIAISVTSQLFMIPMSLAIALTIRTGTYYGEQNWQAMRKVQFLGLMTGTVFALMTMALMWLFRAEIVSIYTSDIEVTQVAMYLILFAIAYQLMDAWQVSAAGCLRGMQDTKGPMWITMLAYWVIAFPVGIYLARFTEMKAAGVWVGLIVGLTVACILLLRRLYMNNQRLMQHS
>NZ_CP012608.1|WP_053579483.1|2127509_2128325_+|ABC-transporter-ATP-binding-protein
MNNQISSTQSLIEVKNLSFKRGERIIYDNVSLNIRRGQITAIMGPSGTGKTTLLRLIGGQLIPDHGQVLLDGKDIASMSRSELFAARARMGMLFQSGALFTDMTTYENVAFPLRAHTQLPEHLIAEIVALKLESVGLRGAEQLMPSELSGGMNRRVALARAIALDPELIMYDEPFAGQDPIVMGVLSRLIRSLREALDLTTIIVSHDVAETLSIADYIYVVAEGKVQGEGTPAELKQHASTFVRQFLTGSIEGPVDYQFSHQAYLSDEVRS
>NZ_CP012608.1|WP_053579484.1|2128321_2129098_+|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE
MNAIALLGRRVIERVRGIGVATVMLLQILFSMPTRLGVKLFIYQMHRIGVMSLLIIGVSGLFIGLVLGLQGYSILVNVGSEAMLGTMVSLTLLRELAPVVAALLFAGRAGSALTAEIGLMKATEQLSSMEMIGVDPLKRIVSPRLWAGVVSLPMLTVIFAAIGIMGGKIVGVDFLGVDEGSYWSGMQSAVQFGHDVVNGIIKSIVFALICTWIAVYQGYACEPTSEGIATSTTRTVVYSSLCVLGFDFVLTAVMFGGV
>NZ_CP012608.1|WP_053579485.1|2129097_2129766_+|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD
MKSRTSELTVGIFVIIFGLALFFLAMKVSGLSGTNLRDAYALTAQFDNVNGLKPRAKVTMSGVTIGRVTDITLDPVSRLATVHFELDGKLTSFNAEQLKTVTNNALEELRYSTDYTEAAPTQQKTMEKQLLDNMSFITSIDEDAYIMVATNGLLGEKYLKVVPGGGLNYVKRGESIANTQGTMDLEDLISKFITGGAGKSTEPTANEKTSSESANTEASFVE
>NZ_CP012608.1|WP_171250375.1|2129833_2130418_+|ABC-transporter-substrate-binding-protein
MIAATAFAAPAEAPPAFVKKVADGLISRLKTDHAKLQNNPEAVKSIVRQNLDPYIDSQSFTRIVMGTYATNQYSTAAQRAQFERNFRETLIENYGSAFAKFSNQSYSLRPYKATNSKNPVVTLDFTNKGEKIPVSFQLVDKGSQWKIRNINVSGIDLGLQFRNQFAATVKRNGGSLDKAIANFKPDADAAVNNK
>NZ_CP012608.1|WP_053579487.1|2130433_2130724_+|STAS-domain-containing-protein
MLEIINQEVQVSGKIDYDNAESYYQQGLKLIQAQGQFPVVINLANLEQGSTLALAVLVRWLRQAPHAKGLKFKAVPDKMMNIIQACHLQDDLQLIS
>NZ_CP012608.1|WP_053579488.1|2130839_2131853_-|magnesium-transporter
MLEAFYATERGSLEDATINGGFDLHPELVWIDLIAPSQEEQQWVLDAYDQNLPTLKSLEDISSSARFYRDDDGILHISTYFLTKNKNFQVDGETDDNASILATVQTVAFILHKDHLFTLRGEKLVAFRAFRARARRNDYEMEYKDPTWVLLGLLEAKLDELADILEDIHKDLEKYSTEVLNNRHREQILDLDDMITRLAQLEDVLGKAQLCLIDLRRVLTFLARPRALGSHIYDADIRELSEDVRSLVEHDAFLFQKVRFLLDTTSGFINTEQNDTIRRFSILPSMLAPPMLVASVYGMNTDVLPFAQGTTSFIIVGIILLLFFFGPLIYFRWKKWI
>NZ_CP012608.1|WP_053580295.1|2132007_2132598_+|TIGR00730-family-Rossman-fold-protein
MNSIAIFCGSALGTDSIFLDTAQKMGKTIAEQGKTLVYGGGRSGLMGVVADSALQAGGQVIGVIPHALVDRELAHPHLTELYVVNNMHERKTKMSELSDAFIALPGGAGTLEEIFEQWTWAQLGIHLKPCAFLNVEGFYDDLLKFIHLTTQKGFTQARFTESIIASDSIEDILQQFKTFQAPQPKWGMANQQDLVK
>NZ_CP012608.1|WP_053579489.1|2132600_2133008_+|NUDIX-domain-containing-protein
MKIITVAAAIILNQQQQMLVVRKKNTTCFMQVGGKLEPNELPEATMLREIQEEIGCQAQIKHFIGCFETATANEPDHHLVSYVYYVTLDQEPKIEAEIVEMKWVDLDDQQIQLAPLSTEIVIPWIKRFLIEDILA
>NZ_CP012608.1|WP_053579490.1|2133027_2133660_-|ComF-family-protein
MFNLIHQLLNKSIHGLSSCILCGIDRQQHHSLCQDCWQQLPWLKSSVQRQEIDIQVACHYSYPMDRIIQKYKYEQQLQFQRLLAETLIALHLPKVQAIVPMPISAPRLAERGYNQSLVIAKILAKHLNVPVWQPISRSDQHSQKGLTRLERIENIEQQFEICTRSKLRYRRVLMLDDVVTTGSSLYALKQKLEVLGCQKIYAACLACATD
>NZ_CP012608.1|WP_053579491.1|2133923_2135969_-|ATP-dependent-DNA-helicase-RecG
MAAVHQLQGVGSASAALLEKLNIFTTDDLLFHLPRDYEDRSTIIPMNQLIVGRSYLLEGIVKGVDFPPGKRKSMAVLLQDDFAKVTLRFYHIYKALTDRAKIDQRLRIFGEVRVGARGLELYHPEIQLITEHTPLPKTELTAIYPATDGLTQPKLRQYVKQALIQHSDDLPELLPPQFTNGYVLKQALEYIHQPPVNANMLQLAQGSHPAQQRLIFEELVAHQISLLSRRAYIQQIAAPAFSPSKNFAKQLLATLPFRMTSAQSRVCKEIVADLKQNKPMLRLIQGDVGAGKTLVAGVTACHALEEGWQVALMAPTEILAEQHYLNFKKWFEPLGLNVSWLSGKQKGKARASAEHLIKQGSANLVVGTHALFQENIEFAKLGLVIIDEQHRFGVDQRLALRNKGTHNTTPHQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLERREEVLHRIASNCGEGKQAYWVCTLVEQSETLDAQAAEATYQEMTERFPHLNIGLVHGKMKAQDKQAVMQQFKENQLQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGATASFCALLYKSPLSQNGQERLRILRESNDGFVIAEKDLEIRGPGELLGTKQTGDMGFRVAKLERDDHLLNQAHHVAQHILKDYPENAIALLKRWLPEAPRYAYV

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Crispr_ID: NZ_CP012608_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012608_3

2616790-2616935

Orphan

Consensus_repeat	Method
ACTGCCAGATAGGCAGCTTAGAAAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP012608_3

>merge|NZ_CP012608|3|2616790-2616935|CRISPRCasFinder
ACTGCCATATAGGCAGCTTAGAAAAACCGAACAAGCGACGAAGTTTTAACTGTCTTGTTTACTGCCAGATAGGCAGCTTAGAAAAATGTAATGATGTTACGGGTTTTAATCCCTTCGTTCACTGCCAGATAGGCAGCTTAGAAAAA

>NZ_CP012608|3|3|2616790-2616935|CRISPRCasFinder
ACTGCCATATAGGCAGCTTAGAAAAA	CCGAACAAGCGACGAAGTTTTAACTGTCTTGTTT
ACTGCCAGATAGGCAGCTTAGAAAAA	TGTAATGATGTTACGGGTTTTAATCCCTTCGTTC
ACTGCCAGATAGGCAGCTTAGAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012608.1\|WP_053579892.1\|2625171_2625855_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_CP012608.1\|WP_053579891.1\|2624674_2625106_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|184788
NZ_CP012608.1\|WP_053579883.1\|2613222_2614923_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|237414
NZ_CP012608.1\|WP_053579878.1\|2606219_2608646_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP012608.1\|WP_053579877.1\|2603106_2603589_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|234634
NZ_CP012608.1\|WP_053579889.1\|2623059_2623308_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012608.1\|WP_053579884.1\|2617449_2617734_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|377476
NZ_CP012608.1\|WP_053579881.1\|2609888_2612672_+\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP012608.1\|WP_053579880.1\|2609424_2609805_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133398
NZ_CP012608.1\|WP_155857501.1\|2603715_2603886_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012608.1\|WP_053579886.1\|2618352_2618985_+\|UPF0149-family-protein	unknown	unknown	gnl\|CDD\|167325
NZ_CP012608.1\|WP_053579879.1\|2608789_2609377_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|223290
NZ_CP012608.1\|WP_053580317.1\|2620432_2621641_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|273913
NZ_CP012608.1\|WP_053579885.1\|2617736_2618288_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NZ_CP012608.1\|WP_171250386.1\|2619063_2620386_+\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP012608.1\|WP_053579849.1\|2614936_2615815_-\|IS982-family-transposase	unknown	unknown	gnl\|CDD\|372648
NZ_CP012608.1\|WP_081405765.1\|2605154_2605994_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349893
NZ_CP012608.1\|WP_155857469.1\|2603953_2605083_-\|IS3-like-element-ISAcsp5-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP012608.1\|WP_053579890.1\|2623417_2624257_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP012608.1\|WP_053579888.1\|2621637_2622882_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|273913

Protein	Function_ID	Function_description	E-value
NZ_CP012608.1\|WP_053579892.1\|2625171_2625855_+\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	2.29987e-22
NZ_CP012608.1\|WP_053579891.1\|2624674_2625106_+\|YraN-family-protein	gnl\|CDD\|184788	PRK14674, PRK14674, hypothetical protein; Provisional.	2.92678e-55
NZ_CP012608.1\|WP_053579883.1\|2613222_2614923_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
NZ_CP012608.1\|WP_053579878.1\|2606219_2608646_-\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP012608.1\|WP_053579877.1\|2603106_2603589_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|234634	PRK00103, PRK00103, rRNA large subunit methyltransferase; Provisional.	3.71721e-75
NZ_CP012608.1\|WP_053579884.1\|2617449_2617734_-\|cell-division-protein-ZapA	gnl\|CDD\|377476	pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell division protein which interacts with FtsZ. FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The interaction of FtsZ with ZapA drives its polymerization and promotes FtsZ filament bundling thereby contributing to the spatio-temporal tuning of the Z-ring.	3.05829e-08
NZ_CP012608.1\|WP_053579881.1\|2609888_2612672_+\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP012608.1\|WP_053579880.1\|2609424_2609805_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133398	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	8.50077e-36
NZ_CP012608.1\|WP_053579886.1\|2618352_2618985_+\|UPF0149-family-protein	gnl\|CDD\|167325	PRK02166, PRK02166, hypothetical protein; Reviewed.	7.18229e-22
NZ_CP012608.1\|WP_053579879.1\|2608789_2609377_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|223290	COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism].	1.93708e-39
NZ_CP012608.1\|WP_053580317.1\|2620432_2621641_+\|FAD-dependent-monooxygenase	gnl\|CDD\|273913	TIGR01988, Ubiquinone_biosynthesis_monooxygenase_COQ6, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	6.15267e-122
NZ_CP012608.1\|WP_053579885.1\|2617736_2618288_-\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	1.37831e-05
NZ_CP012608.1\|WP_171250386.1\|2619063_2620386_+\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	2.97416e-167
NZ_CP012608.1\|WP_053579849.1\|2614936_2615815_-\|IS982-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	9.37332e-47
NZ_CP012608.1\|WP_081405765.1\|2605154_2605994_+\|M28-family-peptidase	gnl\|CDD\|349893	cd05640, M28_like, M28 Zn-peptidase; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	2.40909e-67
NZ_CP012608.1\|WP_155857469.1\|2603953_2605083_-\|IS3-like-element-ISAcsp5-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.03973e-44
NZ_CP012608.1\|WP_053579890.1\|2623417_2624257_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	1.38839e-125
NZ_CP012608.1\|WP_053579888.1\|2621637_2622882_+\|FAD-dependent-monooxygenase	gnl\|CDD\|273913	TIGR01988, Ubiquinone_biosynthesis_monooxygenase_COQ6, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	7.61977e-110

>NZ_CP012608.1|WP_053579849.1|2614936_2615815_-|IS982-family-transposase
MFDFTEIFCAIDDFFKKFEPIYWQFLKQENKRKRIRLATLSLSEIVTIAICYKTSQVNNFKTFFQLLYQFESKLFKSLPCYKNMLSLINQHQLAIHALHRALSKGQACQYLWIDSTPLPVCKNKRIPRSHHALDDIASRGKSSIDWFYGCKLHLLMNSEGQIVNTVLSPGHIADIRKIEELVDGLLATVYGDRGYIGKSIKTKLLEQDIDLITYPRKNMRESLLPFSDEYHLRQRKRIETLIGLLKEKYHLVSSKHRAISGFLAGIFSSLCAYQLCQKNKPKIHVIRNLAYP
>NZ_CP012608.1|WP_053579883.1|2613222_2614923_+|NAD-dependent-malic-enzyme
MTTDNVAIKQPLYIPYAGNTLLELPLLNKGSAFTEHERSKFNLHGLIPHVIETIEEQSHRSYQQYSAFNDAINKHIYLRNIQDTNETLFYHLIENHLSEMMPIIYTPTVGEACQQFSDIYRRHRGIFISYPDRDHIEEILHNVNRKNVKVIVITDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPITLDVGTNNQQLLNDPIYLGWNQPRISGDEYYDFVDHVIEAIQRRWPEALIQFEDFAQKNAMPLLNKYRDKICCFNDDIQGTAAVSVGSLIAASHAAGKQLKDQTITFLGAGSAGCGIAEQIVAQMMAEGLTELEARARVYMVDRFGLITENQPNLLDFQRKLAQKPEIIAEWGNAEEVISLLDVVKNAKPTVLIGVSGQPGLFTEEVIRTLAANCERPIVLPLSNPTSRVEAVPADIIQWTDGKALIATGSPFAPVNYQGKIYNISQCNNSYIFPGIGLGVIASGATRVTDSMLMASSNALAACSPKLTHPDADLLPDIDSIQQVSRIIAVKVAQAAMQAGVAPIISDEALEQAINDHYWKPEYRSYKRSTF
>NZ_CP012608.1|WP_053579881.1|2609888_2612672_+|heavy-metal-translocating-P-type-ATPase
MSEQFKSSCCTKQKSSPEWVSVDPVCGMGVTDLSKPNIDYKGQRYYFCCNGCLNKFERDPEQYLLSADVNQPKKTGCGCAENKPKTAVQSTETVIDPVCGMQVKTDTQFHGIYQDKDCYFCSERCLSKFNIAPEQYVVLKTQSSSCCVTSTPPEPKKQSSCCAGGHSANSSGQTEIDPVCGMSVKTSTDLKTDYQNKTYYFCNPSCLDKFKQDPEFYLIPLDKRPVPEGAADMDYTCPMDPEIVQKGPGTCPICGMALEPMQPTLDDAPNPELVDFSHRFWMTLPLTLIVFVLAMGSHIHAFIPQHIQPWIELVLSIPVVLWAAKPIIERCWTSYKTRNLNMWSLIGVGVLAAFIYSVVATVFPSLIPMEAKTGHGVAVYFEAACMIVSLSLLGQMMELKARAKTADSLKSLLRLQSNTAKLVQNDQVVEVDIGMVKQGDILQISSGEQIPLDGIVVEGKTYVDEAMMTGEPVPVKKELDDPVIGGTVNQQGSIRIQTTAVGANTTLAKMIQTVAEAQRSKAPLQRLADVFAQYFVVTVLIISVLTFIAWMVFSNAQFDLALMCAVAVLIIACPCALGLATPMSVMATTGRAAQKGVLFKDAEAIEALSKVNTLVIDKTGTLTEGKPSLKEIQLLSDQVTQAQAEQWVASIEQYSTHPIAQTLTRLVTATELLKVNDFEEVTGFGVKGHINDQMLYVGSQKLLNQLGLNLKESVQAQLQQQRAKGNVISFLANEQEVLAYISIHDAVKPNAHQVIAQLIADGVEVVMATGDHEQNAKLVAAELGILHVYGNCTPTEKLDIVKKYQAQGKMVAMAGDGINDAPALAQANIGIAMGNGTDIAKQTAQITLVKGDIRGVADAIHMAKAGVKNMKQNLAFSFFYNGLGVPVAAGIFYPLTGWLLTPMLAAVAMSLSSLSVVMNALRLQKSK
>NZ_CP012608.1|WP_053579880.1|2609424_2609805_-|MerR-family-transcriptional-regulator
MLTIGKLAKHCQLNVETIRYYQRIGLMRVPETTEHYRYYNDKDIETLSFIQKAKDAGLQLSEIQELLQLQLNDREQVRQVIQQRLNKIDQRIQELNSLKVRLATWVDECKTTQAASCPILKELKKA
>NZ_CP012608.1|WP_053579879.1|2608789_2609377_-|5-formyltetrahydrofolate-cyclo-ligase
MSVELKLLRKQLRLKRRKVDFFKQQQAQQKVLNRLIRLPQFQHAQKIGLYLHAFGEIQTTQIIEYCFKQYKQVYLPMICNMNQQLVWVHITQQQYRNKRFSHHSLGMQEPMTGRGLHVSTLDFLIMPLLACDPYGTRIGMGGGFYDKTLASASCKPLRVGIAHDFQLIQQRLVREKWDQPLDALITPTKYLYFNR
>NZ_CP012608.1|WP_053579878.1|2606219_2608646_-|endopeptidase-La
MSEIMMNEETLDTQVPSVLPLLALRDVVVYPHMQIALFVGREKSINAVDVARNSNNLVFVVAQQDSLTEEIDHDNLYQYGTVAKIVQVVNHENDENCIKVLIEGLHRSKLVKIIDNDEYLSAEHTISPMTVTIESDSQETRVQELRTLFAQYAEAKLRNARELITASNKIDDLLQLLFFVATRVPLNIDVKQKFLEHDDFEAHLTELMTYLLQQSEEQQIEQTLHDSVKRQMEKNQREYFLNEKMKVIQRELSDMNGGAEDDVAEIERRLEEADLPEHVRKKAESEFRKLKAMQPASSEAAVVRNYIEAILDTPWNKASKVSINLNKAQEILDADHYGLDDVKDRIVEYLAVQSRVKKLKGPILCLVGPPGVGKTSLGESIAKATGREFVRMALGGVRDEAEIRGHRRTYIGAMPGKVVQSLTKVGVKNPLFLLDEIDKMAQDYRGDPASALLEVLDPSQNSKFNDHYLDLDLDLSEVMFICTANSMNIPEALLDRMEVIRLPGYTEEEKVNIADRYLVPKAIKDNGLRAKELTIHEEAIRDIVRRYTREAGVRSLEREVSKIARKVVKEAVSKKAKNLHIDVTAENLSEYLGVHKFDYGMAEEEAQVGHVNGLAWTSVGGELLSIEVAAVKGKGKFITTGSLGDVMKESITAAMTVVRTRADALGIEAIRFEETDIHVHLPEGATPKDGPSAGLALTTALVSAFTGIPVRADIAMTGETNLGGRAMRIGGLKEKLLAAHRGGIKLVFIPQENVRDLVEIPDNVKAGLEIKAVKSIDEILPLALTEIPKPLAKNPIVKPIDEGKAARH
>NZ_CP012608.1|WP_081405765.1|2605154_2605994_+|M28-family-peptidase
MLEPHQIIGPDDYRNYKNIQQLQRVSAWIKEQMHLFGIPCEYQNYAVNGLSYRNVVCRLTNGHADKVIVGAHYDVFGEQQGADDNASGVAGVIETARILVQQKSQLAQNIEFVFYTLQEAPFFKTEQMGSFIHAKSIQSQKDQIQGVYILEMIGYFDENLVQEYPAGLKWVYPQHGNFIAAVSNLQSYALGSQYCQSMRALDRLECQRFIAPAFVSGMEFSDHLNYWKFGIPAMMITDTGSFRNKHYHSKTDTLKTLNLAKMANVVDGLVYSLLTPIQP
>NZ_CP012608.1|WP_155857469.1|2603953_2605083_-|IS3-like-element-ISAcsp5-family-transposase
MTRRKRRNHSAEFKVKVALAAIKGDHTLAELSTQFDLHQNQIIDWKNQLLEQSVNIFSRPTAQQEPEIDLKALHAKIGHQALQIGFFRRCAQKNRAAERQKMIDKTHQLSVRQQSQLIQINRSTLYYKSKEISSTDLSLMHLIDEIHLDYPFMGSRMIRDMLQRQGHQIGRRKVRRLMRLMGIHALYPKPNTSKPNLAHRIFPYLLKNMVIDHSNQVWCTDITYIPMAKGFVYLCAIIDWHSRKVLAHRVSISMETGFCIDALQEAIVKYGCPEVFNTDQGSQFTSEAFLNELKLRNIRISMDGKGRWMDNVMIERLWRSVKHEEVYLKAYDTVKQAKQSIAEYLDFYNMIRPHSSLNKATPDEFYDQHLLKVMAA
>NZ_CP012608.1|WP_155857501.1|2603715_2603886_+|hypothetical-protein
MKKRGNNNKMIFKTPQHLGLLCSTFIFSFFFSTAIWAVPNASPASTDNLKVYLEQI
>NZ_CP012608.1|WP_053579877.1|2603106_2603589_-|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MKIRIITIGQKMPAWVLTGFEDYFKRIQPFVQTQIIELPMAKRGKNDSEADILKYRQIEGDSILNAVKQNEVLIALEVGGKEFSTEKLAETMKAWMLEGNDVVLAIGGPDGHSEAVRKAAAWHWSLSKLTLPHPMVRVMLIEQLYRAMSINHNHPYHRAG
>NZ_CP012608.1|WP_053579884.1|2617449_2617734_-|cell-division-protein-ZapA
MTEQIAVELRVLGHMFRLSTTENEKADLERAAELLNGKYDDFRRKAPRLEPSKLIIMVALELMQEVLAMNKSLQEYAHCERLLSTILEDVENLT
>NZ_CP012608.1|WP_053579885.1|2617736_2618288_-|hypothetical-protein
MLEELQRLQAQIGVLKTRLTHYESENNALSAAKENSAEHHHAQIVQKNGIITQKQEEIDNLSEQLSDTQSQFKQLNTDATSLADRYGRLEKSCTDLKNRFQEILAERNELRVVKEKMQNEQRLAQHEIQGLQQERERLLQKNEHAKAKVETIIQRLSILGTAQDHHAQEIQQLAHPIEVSEDN
>NZ_CP012608.1|WP_053579886.1|2618352_2618985_+|UPF0149-family-protein
MQDDISGWSEWYRNFSKIEEITSPSELHGLLTGIVCVTKAPTREEWQQILATLEIPELDENVLTLLTDESEDIAHALSDDELDYLPLLPDDEHVLASRVEALADWCAGVVLGFGLASGHIRPDEMEWIEHLQDVAAVEFEESDNDEEGEASYQELYEFVRLIPVSLSLGRQKVEISETALLQSIQPQLKRNPSATEASSVVEMFTPHRPS
>NZ_CP012608.1|WP_171250386.1|2619063_2620386_+|Xaa-Pro-aminopeptidase
MKLTQADFQERRDRLAKQMGPHSIAIIATSPVAMRNRDADYKFRADSSFFYLTGFDEPEAVAVIETSESLDDGYSYSLFCRERDREMEIWNGYRAGVEGAVDEYEADEAYAIDLLDEEIIEKLLNKEKLFYRIGQQAEFDARVTNWITEANGESRRGTSAPSHIIQLDRILDEMRLHKSAQEIELMQIASTISAQAHTRAMQTVRPGMMEYALEAELNYIFGQNGCVPAYNSIVGGGANGCILHYVENDKALNDGDLVLIDAACEYQLYASDITRTFPVNGKFSPEQKVLYAIILKAQLAAIDAVRVGHSYKEPHHVAVRIMVEGLIELGLMQGDIEEIIRTESFRQFYMHGTGHWLGMDVHDVGSYKHEGEWRAYEAGMVVTIEPGLYIAPDDETVDEKWRGIGIRIEDDVVVTESGPRVLTASVVKTIEEIEALMAQV
>NZ_CP012608.1|WP_053580317.1|2620432_2621641_+|FAD-dependent-monooxygenase
MQQQVIIVGGGMVGLSLALMLAKASIAVKLLEAIKYPNYDDADLAPYHSSFDARNSALSRRSVQIYQELGLWDALQVHATPIFEVNITEQGSFGKARLKAAQEKVENFGQVIENAWLGRVLLTEVKKQPLIELIDGVQVTSLKQNKDQVYIEALRQDQCLSLQTALLIAADGRDSFCRQALGVGASEHDYDQVAIVTTVQTSKPHQHIGFERFSALGPLALLPLPGEYRRSVVWPVKKGTEHEWLGDENDQHFLDALQQTYGDRAGKFQKTGRRFSFPLSQVLAEKQAIGRVVLMGNAAHTIHPVAGQGFNLCMRDAYVLVRSLTEQLSKSDDIGEPTMLLAYEQARLSDQQRVIKFCDSVVRGFSHQNPMLKLIRNTGLIAFDMIPGVKPLVANYAMGLKA
>NZ_CP012608.1|WP_053579888.1|2621637_2622882_+|FAD-dependent-monooxygenase
MSHIQTDILEVVIVGGGLVGGLTALLLAQGGVQATVLDAAPVLNESKVLSTANPRVLALSQATIHLLKTVNVWHEIARQMPYSGMQVWNKNGYGEINFGQMSSHIPSEAQTLGSMVEPSILNLAIQQKMLEQLKDYRTQVKVMRVEQGINVWHIHLADGTQLTTKLVIGADGANSFVRDQAFIDLDILDYQQAGLTCAIRTAEPHLHAARQIFLETGPLAFLPMSSLKPEQEGFWQSIVWTLPDDFAEEYAALEDDAFTALLSRESHYMLGEVLEATPRAQFPLKARAAQQYVKAGLALIGDAAHVIHPLAGQGVNIGCLDAAILCDVLLHDLKRGVWAHEQTLKRYEHLRKGQNDAMMHSMSAIGWMEKTTFFPVVWARNFGLKQVEQRSSLKDAFMSQANGLSSLQNTCYAI
>NZ_CP012608.1|WP_053579889.1|2623059_2623308_+|hypothetical-protein
MTDMNDYDDAEENAVDDDEAKAAEKGASESETTPTDGDVAEAETLTVTAKLKQRQALEDEVAAFLARGGRITEVPADESAQD
>NZ_CP012608.1|WP_053579890.1|2623417_2624257_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MSAQLFVVATPIGHLDDITYRAIEVLKSVSIIAAEDTRTSAQLLKHFNISTPLTACHEHNESNKIDLLIQRVLNGENMALISDAGTPLISDPGFKLVRAAQQHGIRVTPVPGACAAIAALSSVGLPSDRFSFEGFLPSRQSQRLIQLEKLKDETQTLIFYEAPHRILDSVKDMAQVFGADRPVGFAREITKTFETIKKMTLADLIEWIESDHHQKKGEIVLVVGGSTVEKDMEQEKLDQLLNRLLQDLSVKAASQLAADLTGIKKKVAYQRALELTHKD
>NZ_CP012608.1|WP_053579891.1|2624674_2625106_+|YraN-family-protein
MSDAIRIYLNLGQWAEKQALSFLQTQGFSLIVANYHCRYGEIDLIVQKDQEIIFVEVKARSSTQYAQSYETISLSKQKKIMKSALCFLENEPRFSAFYCRFDVICFDFFQQFAKKIQHDFSKFPYDQQWIENAFTFDQEFINL
>NZ_CP012608.1|WP_053579892.1|2625171_2625855_+|BON-domain-containing-protein
MFNRIAMTLLCVASLSGCASFISSGTGSSPVGTESGVRSLGQVFIDSSIERTAKINLYKLDARFKQARVNIESFHGNVLLTGQVPDAHLKQLAEDNVRAMTDVKTVHNYITVGNQIGYSTIMQDTTVTANTRGLIMKATVVSDSKVRIHTEDGILYVMGRLNNAEITDLNQVLAQVGNVTKIITLIDNVEQSRSLTSSFSSPLVSAQPTEQTPVAIDPDQVEPINAQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

189753 : 245407

uncultured_Caudovirales_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039624119.1\|189753_190962_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.1e-47	47.1
WP_053577944.1\|191273_192602_+	MFS transporter	NA	NA	NA	NA
WP_155857466.1\|192598_193252_+	DsbA family protein	NA	NA	NA	NA
WP_053577946.1\|193248_193566_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA
WP_171250337.1\|193603_194596_+	putative sulfate exporter family transporter	NA	NA	NA	NA
WP_081405718.1\|194709_195636_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_155857467.1\|195674_196419_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.5e-11	37.2
WP_053577948.1\|196580_197870_+	salicylate 1-monooxygenase	NA	NA	NA	NA
WP_053577949.1\|197966_198887_+	catechol 1,2-dioxygenase	NA	NA	NA	NA
WP_053577950.1\|198991_200344_+	MFS transporter	NA	NA	NA	NA
WP_081405719.1\|200395_201289_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_053577951.1\|201760_204517_+	aconitate hydratase AcnA	NA	NA	NA	NA
WP_053577952.1\|204857_206090_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_053577953.1\|206086_206347_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_053577954.1\|206764_207001_-	DUF2132 domain-containing protein	NA	NA	NA	NA
WP_155857465.1\|207586_208715_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_053577955.1\|209094_210429_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_053577956.1\|210620_211388_-	alpha/beta fold hydrolase	G1DB77	Mycobacterium_phage	1.2e-06	37.3
WP_053577957.1\|211544_212420_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_053580205.1\|212594_213347_-	zeta toxin	NA	NA	NA	NA
WP_053577958.1\|213351_213606_-	hypothetical protein	NA	NA	NA	NA
WP_053577959.1\|213761_214118_-	hypothetical protein	NA	NA	NA	NA
WP_081405771.1\|214332_214845_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	2.6e-39	50.3
WP_053577960.1\|214917_215103_-	hypothetical protein	NA	NA	NA	NA
WP_053577961.1\|215401_216718_+	Y-family DNA polymerase	A0A2H4JBL5	uncultured_Caudovirales_phage	4.4e-86	40.8
WP_053577962.1\|216954_217410_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_053577963.1\|217426_217843_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_053577964.1\|217860_219228_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_053580207.1\|219289_219769_-	hypothetical protein	NA	NA	NA	NA
WP_053577965.1\|220028_221519_+	hypothetical protein	NA	NA	NA	NA
WP_053577966.1\|221852_222110_-	hypothetical protein	NA	NA	NA	NA
WP_155857468.1\|222244_222400_-	hypothetical protein	NA	NA	NA	NA
WP_092719303.1\|222837_223065_-	hypothetical protein	NA	NA	NA	NA
WP_053577968.1\|223284_224388_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_053577969.1\|224499_224910_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_053577970.1\|225031_227056_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_053577971.1\|227194_227740_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_053577972.1\|227758_228667_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_053577973.1\|228754_229654_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_053577974.1\|230098_230893_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_053577975.1\|231101_232034_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	3.5e-58	40.9
WP_053577976.1\|232286_233579_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_053577977.1\|234035_234278_+	hypothetical protein	NA	NA	NA	NA
WP_171250300.1\|234334_234793_-	hypothetical protein	NA	NA	NA	NA
WP_053577979.1\|234915_235776_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_053577980.1\|235855_236071_-	hypothetical protein	NA	NA	NA	NA
WP_053577981.1\|236067_236280_-	DUF4177 domain-containing protein	NA	NA	NA	NA
WP_053577982.1\|237127_237415_-	hypothetical protein	NA	NA	NA	NA
WP_053577983.1\|237567_237807_-	hypothetical protein	NA	NA	NA	NA
WP_053577984.1\|238534_239758_-	sodium/glutamate symporter	NA	NA	NA	NA
WP_053577985.1\|239953_240169_-	hypothetical protein	NA	NA	NA	NA
WP_053577986.1\|240377_241175_-	hypothetical protein	NA	NA	NA	NA
WP_053577987.1\|241238_243878_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_053577787.1\|244395_244872_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_126038012.1\|244867_245407_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

877711 : 911504

Pseudomonas_phage(20.0%)

transposase,tRNA,integrase

attL 881205:881219|attR 893566:893580

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053578511.1\|877711_879427_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_053578512.1\|879493_880816_-	hypothetical protein	NA	NA	NA	NA
WP_053578513.1\|880840_883123_-	hypothetical protein	NA	NA	NA	NA
881205:881219	attL	NA	NA	NA	NA
WP_053578514.1\|883153_883831_-	hypothetical protein	NA	NA	NA	NA
WP_053578515.1\|883840_885292_-	hypothetical protein	NA	NA	NA	NA
WP_053578516.1\|885535_886105_-	dCTP deaminase	S5VM63	Pseudomonas_phage	9.7e-75	74.6
WP_053578517.1\|886230_886824_-	LysE family transporter	NA	NA	NA	NA
WP_053578518.1\|887100_887652_+	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_053578519.1\|887789_889070_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_053578520.1\|889443_889899_-	hypothetical protein	NA	NA	NA	NA
WP_155857469.1\|890260_891389_+\|transposase	IS3-like element ISAcsp5 family transposase	NA	NA	NA	NA
WP_053578521.1\|892188_893418_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAT5	uncultured_Caudovirales_phage	2.8e-71	38.7
WP_053578522.1\|893570_894566_+	hypothetical protein	NA	NA	NA	NA
893566:893580	attR	NA	NA	NA	NA
WP_053580243.1\|894659_894875_+	hypothetical protein	NA	NA	NA	NA
WP_053578523.1\|894878_895262_+	hypothetical protein	NA	NA	NA	NA
WP_053578524.1\|895258_895474_+	DNA-binding protein	NA	NA	NA	NA
WP_053578525.1\|895470_895974_+	hypothetical protein	A0A0R6PIG1	Moraxella_phage	8.7e-27	50.0
WP_053578526.1\|895970_896339_+	hypothetical protein	NA	NA	NA	NA
WP_053578527.1\|896663_897002_+	hypothetical protein	NA	NA	NA	NA
WP_053578528.1\|897004_897307_+	hypothetical protein	NA	NA	NA	NA
WP_053578529.1\|897303_899775_+	DUF927 domain-containing protein	NA	NA	NA	NA
WP_053578530.1\|900185_901682_-	hypothetical protein	NA	NA	NA	NA
WP_053577787.1\|901682_902159_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_126038012.1\|902154_902694_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_155857478.1\|902690_903233_-	hypothetical protein	NA	NA	NA	NA
WP_000543647.1\|903363_903702_-\|transposase	transposase	NA	NA	NA	NA
WP_000669095.1\|903793_904198_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_053578532.1\|904245_906006_-	SIR2 family protein	NA	NA	NA	NA
WP_053578533.1\|906199_906466_+	single-stranded DNA-binding protein	A0A2I7R2S3	Vibrio_phage	2.6e-22	64.1
WP_053578534.1\|906698_906881_+	hypothetical protein	NA	NA	NA	NA
WP_053578535.1\|906888_907359_+	hypothetical protein	NA	NA	NA	NA
WP_053578536.1\|908236_908848_+	hypothetical protein	NA	NA	NA	NA
WP_053578537.1\|909170_909845_+	hypothetical protein	NA	NA	NA	NA
WP_053578538.1\|909873_910206_+	hypothetical protein	NA	NA	NA	NA
WP_039624119.1\|910295_911504_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.1e-47	47.1

DBSCAN-SWA_3

1542170 : 1594000

uncultured_Caudovirales_phage(30.0%)

transposase,integrase

attL 1554006:1554028|attR 1599856:1599878

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053579046.1\|1542170_1543355_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	3.0e-38	29.3
WP_004668074.1\|1543344_1543593_+	hypothetical protein	NA	NA	NA	NA
WP_053579047.1\|1543661_1544222_+	DUF1376 domain-containing protein	NA	NA	NA	NA
WP_053579048.1\|1544232_1544979_+	ATP-binding protein	A0A0D4DBZ2	Acinetobacter_phage	7.3e-46	37.8
WP_053579049.1\|1545110_1548002_-	DUF3427 domain-containing protein	Q5YA94	Bacillus_phage	4.5e-27	26.7
WP_053579050.1\|1547998_1548391_-	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_053579051.1\|1548636_1549083_-	hypothetical protein	NA	NA	NA	NA
WP_126038012.1\|1549190_1549730_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_053577787.1\|1549725_1550202_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_053579052.1\|1550259_1550697_-	hypothetical protein	NA	NA	NA	NA
WP_053579053.1\|1550802_1551702_+	hypothetical protein	NA	NA	NA	NA
WP_053579054.1\|1551760_1552810_-	HNH endonuclease	A0A2I2MUI7	uncultured_Caudovirales_phage	1.0e-77	62.5
WP_053579055.1\|1552812_1553403_-	class I SAM-dependent methyltransferase	A0A2H4J5G6	uncultured_Caudovirales_phage	1.6e-32	82.5
WP_053579056.1\|1553554_1553884_+	DUF4236 domain-containing protein	NA	NA	NA	NA
1554006:1554028	attL	NA	NA	NA	NA
WP_053579057.1\|1554881_1555283_-	hypothetical protein	NA	NA	NA	NA
WP_085940850.1\|1556590_1557755_+\|transposase	IS3-like element ISAba21 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.5e-140	86.3
WP_081405743.1\|1558068_1558275_+	hypothetical protein	NA	NA	NA	NA
WP_053579058.1\|1558348_1558612_-	hypothetical protein	NA	NA	NA	NA
WP_053579059.1\|1559213_1562561_-	DEAD/DEAH box helicase	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	3.4e-50	30.2
WP_053579060.1\|1562744_1563023_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_053579061.1\|1563015_1564308_-	HipA domain-containing protein	NA	NA	NA	NA
WP_053579063.1\|1565389_1566172_-	hypothetical protein	NA	NA	NA	NA
WP_053580272.1\|1566217_1566559_-	DUF192 domain-containing protein	NA	NA	NA	NA
WP_053579064.1\|1566675_1567971_-	Y-family DNA polymerase	A0A2H4JBL5	uncultured_Caudovirales_phage	3.7e-146	56.7
WP_053579065.1\|1568108_1568813_-\|transposase	IS6-like element IS1008 family transposase	A0A077SL39	Escherichia_phage	1.1e-117	84.1
WP_171250315.1\|1569179_1569533_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_053579067.1\|1569648_1571256_+	allantoin permease	NA	NA	NA	NA
WP_053579068.1\|1571662_1572145_+	urease accessory protein UreE	NA	NA	NA	NA
WP_053579069.1\|1572131_1572797_+	urease accessory protein	NA	NA	NA	NA
WP_005100598.1\|1572814_1573429_+	urease accessory protein UreG	NA	NA	NA	NA
WP_004637157.1\|1573443_1574010_+	HupE/UreJ family protein	NA	NA	NA	NA
WP_171250364.1\|1574222_1574960_+	urease accessory protein UreD	NA	NA	NA	NA
WP_000422459.1\|1575060_1575363_+	urease subunit gamma	NA	NA	NA	NA
WP_053579071.1\|1575382_1575691_+	urease subunit beta	NA	NA	NA	NA
WP_053580273.1\|1575733_1577434_+	urease subunit alpha	NA	NA	NA	NA
WP_155857489.1\|1577998_1578139_-	hypothetical protein	NA	NA	NA	NA
WP_053579072.1\|1578898_1579771_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_053579073.1\|1579773_1580190_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_016659403.1\|1580191_1580608_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_005247061.1\|1580728_1581037_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_016659404.1\|1581421_1582162_-	thiol:disulfide interchange protein DsbG	NA	NA	NA	NA
WP_016659405.1\|1582181_1583030_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_053579074.1\|1583026_1584964_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_005093734.1\|1585072_1585747_+	response regulator transcription factor	NA	NA	NA	NA
WP_053579075.1\|1585739_1587128_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_081405745.1\|1587157_1588090_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	9.3e-59	41.2
WP_034435750.1\|1588371_1588869_+	hypothetical protein	NA	NA	NA	NA
WP_005249577.1\|1588865_1591046_+	hypothetical protein	NA	NA	NA	NA
WP_053579077.1\|1591042_1594000_+\|integrase	site-specific integrase	NA	NA	NA	NA
1599856:1599878	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1819013 : 1949981

110

Escherichia_phage(13.64%)

transposase,holin,integrase

attL 1884180:1884205|attR 1903350:1903375

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053579251.1\|1819013_1819946_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	3.5e-58	40.9
WP_053579252.1\|1820165_1820618_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_053579253.1\|1820800_1821283_+	glutathione peroxidase	A0A1S7DLQ4	Molluscum_contagiosum_virus	1.5e-12	31.2
WP_053579254.1\|1821539_1822484_+	glutathione synthase	NA	NA	NA	NA
WP_053579255.1\|1822793_1823891_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_053579256.1\|1823904_1825353_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_053579257.1\|1825409_1826339_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_053579258.1\|1826341_1827196_+	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_053579259.1\|1827268_1828531_+	cell division protein FtsA	NA	NA	NA	NA
WP_053579260.1\|1828695_1829886_+	cell division protein FtsZ	NA	NA	NA	NA
WP_053579261.1\|1830009_1830912_+	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA
WP_053579262.1\|1831008_1831449_-	DUF721 domain-containing protein	NA	NA	NA	NA
WP_053579263.1\|1831557_1832241_+	M23 family metallopeptidase	G3MBP9	Bacillus_virus	7.6e-18	40.1
WP_053579264.1\|1832522_1835225_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_053579265.1\|1835227_1837234_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_053579266.1\|1837579_1838155_+	TMEM165/GDT1 family protein	NA	NA	NA	NA
WP_053579267.1\|1838299_1838665_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_053579268.1\|1838837_1840304_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-89	40.0
WP_053579269.1\|1840433_1841765_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_053579270.1\|1841774_1842431_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_053579271.1\|1842431_1844135_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.7e-64	30.8
WP_053579272.1\|1844391_1845168_-	putative porin	NA	NA	NA	NA
WP_155857493.1\|1845611_1846706_+	peptide chain release factor 2	NA	NA	NA	NA
WP_053579274.1\|1846847_1847147_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_053579275.1\|1847162_1848239_+	alkene reductase	NA	NA	NA	NA
WP_053579276.1\|1848347_1849628_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_053579277.1\|1849807_1850521_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_053579278.1\|1850494_1851481_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_053579279.1\|1851591_1852173_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_053579280.1\|1852482_1854426_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	7.8e-92	40.9
WP_053580285.1\|1854554_1855736_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_053579281.1\|1857210_1858317_-	dimethyl sulfone monooxygenase SfnG	NA	NA	NA	NA
WP_053579282.1\|1858342_1859077_-	FMN reductase	NA	NA	NA	NA
WP_053579283.1\|1859450_1860101_+	response regulator transcription factor	NA	NA	NA	NA
WP_053579284.1\|1860178_1860946_-	hypothetical protein	NA	NA	NA	NA
WP_053579285.1\|1861354_1864846_-	hybrid sensor histidine kinase/response regulator	A0A2K9L0Z8	Tupanvirus	1.4e-11	26.3
WP_053579286.1\|1865051_1865378_+	DUF485 domain-containing protein	NA	NA	NA	NA
WP_053580286.1\|1865385_1867101_+	cation acetate symporter	NA	NA	NA	NA
WP_053579287.1\|1867379_1868069_+	ion channel	NA	NA	NA	NA
WP_053579288.1\|1868246_1870217_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	3.2e-24	26.6
WP_053579289.1\|1870279_1871161_-	porin Omp33-36	NA	NA	NA	NA
WP_053579290.1\|1872249_1873044_+	class D beta-lactamase	NA	NA	NA	NA
WP_053579291.1\|1873222_1876054_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	56.4
WP_053580287.1\|1876325_1876679_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_053579292.1\|1876741_1877083_+	GlpM family protein	NA	NA	NA	NA
WP_053579293.1\|1877343_1878024_-	thiaminase II	NA	NA	NA	NA
WP_053579294.1\|1878256_1879342_+	DUF475 domain-containing protein	A0A172Q0Y5	Acinetobacter_phage	7.2e-87	50.3
WP_053579295.1\|1879491_1880856_+	MFS transporter	NA	NA	NA	NA
WP_053579296.1\|1881051_1882182_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_053579297.1\|1882174_1884223_+	hypothetical protein	NA	NA	NA	NA
1884180:1884205	attL	NA	NA	NA	NA
WP_155857494.1\|1884219_1885439_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	2.0e-77	51.9
1884180:1884205	attL	NA	NA	NA	NA
WP_155857494.1\|1884219_1885439_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	2.0e-77	51.9
WP_053579300.1\|1885566_1887354_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_009386622.1\|1887508_1888117_+	hypothetical protein	NA	NA	NA	NA
WP_009386623.1\|1888187_1888775_+	single-stranded DNA-binding protein	A0A077SK05	Escherichia_phage	4.1e-36	57.1
WP_053579301.1\|1888992_1890165_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_155857495.1\|1890145_1891096_+	hypothetical protein	NA	NA	NA	NA
WP_039624119.1\|1891169_1892378_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.1e-47	47.1
WP_053579302.1\|1893066_1895040_+\|integrase	integrase	NA	NA	NA	NA
WP_053579303.1\|1895032_1895509_+	hypothetical protein	NA	NA	NA	NA
WP_081405750.1\|1895510_1895852_-	hypothetical protein	NA	NA	NA	NA
WP_053580288.1\|1897379_1897586_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_125316795.1\|1898583_1899749_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.5e-127	76.3
WP_053579305.1\|1899761_1900376_+	hypothetical protein	NA	NA	NA	NA
WP_053579306.1\|1901877_1902837_+	hypothetical protein	NA	NA	NA	NA
WP_155857469.1\|1903534_1904663_+\|transposase	IS3-like element ISAcsp5 family transposase	NA	NA	NA	NA
1903350:1903375	attR	NA	NA	NA	NA
WP_155857469.1\|1903534_1904663_+\|transposase	IS3-like element ISAcsp5 family transposase	NA	NA	NA	NA
1903350:1903375	attR	NA	NA	NA	NA
WP_155857496.1\|1904704_1905881_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.1e-72	52.7
WP_009392826.1\|1906169_1906490_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_053579309.1\|1906505_1907906_+	cytochrome P450	NA	NA	NA	NA
WP_053579310.1\|1907934_1909170_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_053579311.1\|1909198_1909975_+	thioesterase family protein	NA	NA	NA	NA
WP_053578120.1\|1911212_1911914_-\|transposase	IS1 family transposase	A0A218MNG1	uncultured_virus	1.5e-37	56.6
WP_009391563.1\|1912414_1912954_-	hypothetical protein	NA	NA	NA	NA
WP_009391605.1\|1912978_1913818_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_009391568.1\|1913910_1914501_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_171250320.1\|1914855_1915449_+	single-stranded DNA-binding protein	M4SRQ0	Psychrobacter_phage	1.2e-32	62.3
WP_053579313.1\|1915580_1915922_-	hypothetical protein	NA	NA	NA	NA
WP_053579314.1\|1916136_1916700_+	peroxiredoxin	NA	NA	NA	NA
WP_053579315.1\|1916887_1917763_+	pirin family protein	NA	NA	NA	NA
WP_171250367.1\|1918375_1919683_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_053579317.1\|1919688_1920519_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_053579318.1\|1920805_1921033_-	hypothetical protein	NA	NA	NA	NA
WP_053579319.1\|1921346_1922408_-	asparaginase	NA	NA	NA	NA
WP_053579321.1\|1925939_1927070_-	Fic family protein	D7RWK9	Brochothrix_phage	4.8e-17	25.7
WP_155857469.1\|1927428_1928558_-\|transposase	IS3-like element ISAcsp5 family transposase	NA	NA	NA	NA
WP_053579322.1\|1928643_1928829_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.5e-10	50.0
WP_053579323.1\|1929224_1931105_+	potassium transporter Kup	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	1.4e-74	32.3
WP_053579324.1\|1931196_1931937_-	hypothetical protein	NA	NA	NA	NA
WP_053579325.1\|1932192_1933290_+	DNA/RNA non-specific endonuclease	X2KR27	Campylobacter_phage	2.5e-10	32.7
WP_053580289.1\|1933357_1933603_+	hypothetical protein	NA	NA	NA	NA
WP_053579326.1\|1933722_1934730_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_053579327.1\|1934832_1935444_+	sterol desaturase family protein	NA	NA	NA	NA
WP_053579328.1\|1935729_1936488_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_053579329.1\|1936601_1937552_+	homoserine kinase	NA	NA	NA	NA
WP_053579330.1\|1937566_1938187_+	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_053579331.1\|1938220_1938613_+	hypothetical protein	NA	NA	NA	NA
WP_053579332.1\|1938678_1939410_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_053579333.1\|1939529_1940156_-	3'-5' exonuclease domain-containing protein 2	NA	NA	NA	NA
WP_053579334.1\|1940318_1940936_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_053579335.1\|1940935_1941529_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_053579336.1\|1941625_1942003_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_053579337.1\|1942615_1943350_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_053579338.1\|1943581_1944103_+	hypothetical protein	NA	NA	NA	NA
WP_053579339.1\|1944205_1944661_-	hypothetical protein	NA	NA	NA	NA
WP_053579340.1\|1944940_1945639_-	hypothetical protein	NA	NA	NA	NA
WP_053579341.1\|1945790_1946666_+	SAM-dependent methyltransferase TehB	NA	NA	NA	NA
WP_053579342.1\|1946784_1946970_+	hypothetical protein	NA	NA	NA	NA
WP_053579343.1\|1946979_1947531_+	hypothetical protein	NA	NA	NA	NA
WP_053577787.1\|1947583_1948060_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_126038012.1\|1948055_1948595_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_081405716.1\|1948955_1949981_+\|transposase	IS30-like element ISAba125 family transposase	A0A2K9V2S9	Faecalibacterium_phage	2.0e-25	30.4

DBSCAN-SWA_5

2727017 : 2740628

Acinetobacter_phage(41.18%)

capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053579978.1\|2727017_2727320_-	hypothetical protein	A0A0D4DCL0	Acinetobacter_phage	1.2e-36	84.7
WP_053579979.1\|2727361_2727577_-	KTSC domain-containing protein	A0A0D4DBY2	Acinetobacter_phage	1.8e-26	83.1
WP_053579980.1\|2727637_2727964_-	hypothetical protein	A0A0D4DCB9	Acinetobacter_phage	3.8e-23	53.2
WP_053579981.1\|2727979_2728666_-	helix-turn-helix transcriptional regulator	A0A0R6PKV4	Moraxella_phage	1.4e-48	43.2
WP_053579982.1\|2728768_2728957_+	hypothetical protein	NA	NA	NA	NA
WP_053579983.1\|2729008_2729464_+	phage regulatory CII family protein	A0A2H4J3D5	uncultured_Caudovirales_phage	1.7e-53	67.3
WP_053579984.1\|2729511_2730390_+	replication protein	NA	NA	NA	NA
WP_053579985.1\|2730386_2731136_+	ATP-binding protein	A0A0D4DBZ2	Acinetobacter_phage	7.2e-62	51.7
WP_053579986.1\|2731132_2731456_+	hypothetical protein	A0A0R6PGW1	Moraxella_phage	1.5e-16	44.0
WP_053579987.1\|2731452_2731731_+	winged helix DNA-binding protein	NA	NA	NA	NA
WP_053579988.1\|2731727_2731967_+	hypothetical protein	A0A2H4J558	uncultured_Caudovirales_phage	3.2e-11	42.6
WP_053579989.1\|2731963_2732353_+	hypothetical protein	NA	NA	NA	NA
WP_053580322.1\|2732448_2732853_+	DUF1064 domain-containing protein	A0A0R6PJ28	Moraxella_phage	8.2e-20	49.2
WP_053579990.1\|2732864_2733305_+	hypothetical protein	A0A2H4J548	uncultured_Caudovirales_phage	2.6e-51	62.3
WP_053579991.1\|2733862_2734936_+	RelA/SpoT domain-containing protein	A0A1B0VBT5	Salmonella_phage	4.5e-33	33.3
WP_053579992.1\|2734993_2735422_+	hypothetical protein	A0A0P0IVP9	Acinetobacter_phage	6.0e-45	62.5
WP_053579993.1\|2735390_2736038_+	hypothetical protein	A0A2H4JE07	uncultured_Caudovirales_phage	4.6e-113	88.7
WP_053579994.1\|2736090_2736555_+	DUF2280 domain-containing protein	A0A0D4DC15	Acinetobacter_phage	2.0e-46	62.4
WP_053579995.1\|2736544_2737951_+\|terminase	phage terminase large subunit	A0A0D4DCE6	Acinetobacter_phage	5.9e-198	71.6
WP_053579996.1\|2737959_2739420_+	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	6.1e-206	73.8
WP_053579997.1\|2739422_2740628_+\|capsid	minor capsid protein	B7SDN5	Haemophilus_phage	1.3e-23	34.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012608

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection