CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	2 crisprs	csa3	2	1
NZ_CP012479	Arthrobacter sp. ERGS1:01 isolate water chromosome, complete genome	6 crisprs	cas3,RT,DinG,csa3,WYL,DEDDh	5	3
NZ_CP012478	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012477_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012477_1

4210-4433

Orphan

Consensus_repeat	Method
CCCCACACACGGGGCCGCTCCTGTTTAACAGCACCACCATCACCAGGCCCCCACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012477_1

>merge|NZ_CP012477|1|4210-4433|CRISPRCasFinder
CCCCACACACGGGGCCGCTCCTGTTTAACAGCACCACCATCACCAGGCCCCCACAACAAACACACCACACCACCAAAACCCAGGCCCCACACACGGGGCCGCTCCTGTTTAACAGCACCACCATCACCAGGCCCCCACAACAAACACACCACACCACCAAAACCCAGGCCCCCACACACGGGGCCGCTCCTGTTTAACAGCACCACCATCACCAGGCCCCCACA

>NZ_CP012477|1|1|4210-4433|CRISPRCasFinder
CCCCACACACGGGGCCGCTCCTGTTTAACAGCACCACCATCACCAGGCCCCCACA	ACAAACACACCACACCACCAAAACCCAGGCCCCACACACGGGGCCGCTCCTGTTTAACAGCACCACCATCACCAGGCCCCCACAACAAACACACCACACCACCAAAACCCAGGC
CCCCACACACGGGGCCGCTCCTGTTTAACAGCACCACCATCACCAGGCCCCCACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012477.1\|WP_054009177.1\|25488_27282_+\|dipeptide/oligopeptide/nickel-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP012477.1\|WP_054009171.1\|12044_12902_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|132382
NZ_CP012477.1\|WP_054009172.1\|12979_13831_+\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|293742
NZ_CP012477.1\|WP_054009175.1\|18695_20153_-\|DUF3375-domain-containing-protein	unknown	unknown	gnl\|CDD\|371764
NZ_CP012477.1\|WP_054009176.1\|20304_23925_-\|TM0106-family-RecB-like-putative-nuclease	unknown	unknown	gnl\|CDD\|225160
NZ_CP012477.1\|WP_054009173.1\|13831_14671_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
NZ_CP012477.1\|WP_054009174.1\|14680_17983_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|227250
NZ_CP012477.1\|WP_054009178.1\|27278_28082_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224049
NZ_CP012477.1\|WP_082368763.1\|24421_25480_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP012477.1\|WP_082368762.1\|17979_18699_-\|DUF4194-domain-containing-protein	unknown	unknown	gnl\|CDD\|372745

Protein	Function_ID	Function_description	E-value
NZ_CP012477.1\|WP_054009177.1\|25488_27282_+\|dipeptide/oligopeptide/nickel-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.67353e-112
NZ_CP012477.1\|WP_054009171.1\|12044_12902_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|132382	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466). [Regulatory functions, DNA interactions].	5.66724e-70
NZ_CP012477.1\|WP_054009172.1\|12979_13831_+\|alkaline-phosphatase-family-protein	gnl\|CDD\|293742	cd16018, Enpp, Ectonucleotide pyrophosphatase/phosphodiesterase, also called autotaxin. Ecto-nucleotide pyrophosphatases/phosphodiesterases (ENPPs) hydrolyze 5'-phosphodiester bonds in nucleotides and their derivatives, resulting in the release of 5'-nucleotide monophosphates. ENPPs have multiple physiological roles, including nucleotide recycling, modulation of purinergic receptor signaling, regulation of extracellular pyrophosphate levels, stimulation of cell motility, and possible roles in regulation of insulin receptor (IR) signaling and activity of ecto-kinases. The eukaryotic ENPP family contains at least five members that have different tissue distribution and physiological roles.	1.33265e-22
NZ_CP012477.1\|WP_054009175.1\|18695_20153_-\|DUF3375-domain-containing-protein	gnl\|CDD\|371764	pfam11855, DUF3375, Protein of unknown function (DUF3375). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.	1.98087e-95
NZ_CP012477.1\|WP_054009176.1\|20304_23925_-\|TM0106-family-RecB-like-putative-nuclease	gnl\|CDD\|225160	COG2251, COG2251, Predicted nuclease (RecB family) [General function prediction only].	5.05808e-65
NZ_CP012477.1\|WP_054009173.1\|13831_14671_+\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	1.84451e-32
NZ_CP012477.1\|WP_054009174.1\|14680_17983_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|227250	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown].	1.61891e-106
NZ_CP012477.1\|WP_054009178.1\|27278_28082_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224049	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.36385e-106
NZ_CP012477.1\|WP_082368763.1\|24421_25480_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.14509e-98
NZ_CP012477.1\|WP_082368762.1\|17979_18699_-\|DUF4194-domain-containing-protein	gnl\|CDD\|372745	pfam13835, DUF4194, Domain of unknown function (DUF4194).	1.0403e-22

>NZ_CP012477.1|WP_054009171.1|12044_12902_-|LysR-family-transcriptional-regulator
MNLTHLRAFHLVASYGSYTAAATAAGVSQPTLSEQVRLLEGKYSQLLLRRAGRSMELTSTGEALLAVTTRLFAAELEAESLLSARLGTLSGRLRFGTDAPIHAVPILSRLRSRHPGIKVELISGNSASIKKAVANGSADIGIVADASPHPLLTTAVLGTQDLVALVRHDSLLAGAKQVSIKALNGQSLIMREPGSVTRSVTQAALADWGVAPGDITETDGREAVQAAVLAGLGIGLIGDGEFSHDPRLLLLDLVEDIAPMTEYVAYRTDRGRDPVIAAALACTAP
>NZ_CP012477.1|WP_054009172.1|12979_13831_+|alkaline-phosphatase-family-protein
MNSTLTPRKRHVLVVGMDGIRHDSLLDAQTPVLDALARDGVLLPVRVHEKNYTVSGPVWSTVATGVYMDRHGVVGNSVHPPEMAAFPDFTARVRAHDPHAETMIAASWHPLAAAVECGPIFSSRGWVNEVDPERENNRESWLRADDEVADYAAGRLGAEDLAVSFVYFGEGDVEAHNHGTGPGYTACIERCDARLGRLVEAIAGRPGRADEDWSVIVVTDHGHLDQGGHGGESDEERTAWMVASGAGMPDGITALDHADIAAQVLATFGVPDANLDGVPFGRR
>NZ_CP012477.1|WP_054009173.1|13831_14671_+|EamA-family-transporter
MSPTVAGLVLVAALLHSSWNAIAKAIPDKLASSTLIALVYLVAGGMGVFVFGLPAAAAWPFILVSACLQTAYLILLTTSYKHGDFSQVYPLARGLAVLLVAIVAVTFLAENLSAVQLVGVVVVGGSLLALALIGKGSSRLGVTFAVLTGACIAAYSLVDGLGVRQSGSPFAYISWLFLIQGVMIPLVCWRLAPRRMEFVAGVRVHWKLGALGGVLSMLAYGIVVWAQNVAPLALVSALRESSVLLAGVIGAVFFSERFSKTRLALTASAVAGIAALQLG
>NZ_CP012477.1|WP_054009174.1|14680_17983_-|chromosome-segregation-protein-SMC
MSIATPLPFGEEINPGQYRLSQIQIINWGTFHGRHSMYVDRAGTLLTGHPGVGKSTLFDGIQHIFYAAPRLNESAHEASNRKDRRTTFSYMRGRKIKTADGTVYQRPSATWSATALVFEDGLGRHVTIAALFDLPANGLEGQVGKHYLILDKPLDTAALENHGSRRFSPSSLHAALPAAEAFDVHKTFAERFRRKLGIDNDKAFSLLRTLQNGKGLDKGVNRFFRYEVLDKPATITAAKAAVEDFSHLRGIYRQLEDARGQRDALTQVPELHGKLRELRESLSRTTELKNKQLPLLRQQFQAELLTAKSLSLGDRRTAMRGDIEAAVAAKDALTDAVAALDEQHANHGGNAIEGLEKDIRTTVREHQERARIEAAARGDLDAAGLAYDWSPAGLSAARQSAVDGVARQQEETESARTREYEAVAASMNTKAQEKKLRAEIASYERRGSNIDGRSAAARRAICAETGLDPADMPFAGELVDIGSDHLPWRPAAEKVLRSLATTLLVRGEDIKTVTAAINALDGHGKLRWINIATPPRQGEPGEDHLVTKLEFQNSDAGTWLRAKITGDFGFRCVDNDAELHQHDRAISRAGTLKVNSATFERDTRSVSPSDYLLGFNNVDKILQLQAQADDLAAAYESSAALAEQRSKAKDELTGRLDALKRVAADTRAFEQLDSAALAAALETLRATLAATIDSSASLAQIRASRSDAKAELEAAVGRVAVLHNDLAGIEKELHGVQATAVATGEQARLNPPSDWAVDAFAPYLADGEPASLEELEQLFGRAAVDLGERLTTIKERVFRTEGALSDTFKAFAREFGPAVSSSLGTGAEAVEQYEELYERIVADGLPQRQDEFREYFNNRSYERFSDLLQLLEEERRAIEERILPLNQILEDVPFEKGSRLRLEVKTTIPEEARAFRTELKEALGNAYAKATEEKMAASYQQLERLVDALSDSSLQHWADTVLDVRQHVTISCNEHRPNGEVELGLEPGTLSGGEGQRFTSFIMGAALAYQLGIDTQGYSTYGTVMIDEAFIQANSEYAGAGINALQEFGFQLLLAAPEDKVDLSKHLGSVTDIIKHPQANVSGFVSTGRSPATATDIILR
>NZ_CP012477.1|WP_082368762.1|17979_18699_-|DUF4194-domain-containing-protein
MTQSSELDPETYDAGPAPTPGSDAYRTERALFAGDTGSFPLDIRQALVRLLRGPYIDGTVDAALWTTLLTHRASLQQYLSEIFLFLTVDTDRKIAMLTPAEIDAVHTQPIVARKPLRREETLLALRLRMLLDRHAGTGTDVTITRSGAREILAEHRRPGAVDDKRLDEQTDASLARLLALKLLLPTELATEFRVSNALALALPFDSIEAIPAYLDALDKSNDDELDLDMPESNDRESVQ
>NZ_CP012477.1|WP_054009175.1|18695_20153_-|DUF3375-domain-containing-protein
MRSTENAVAHWHTQKQLRHGPAWKLMQAAPWTVAFLRAEFTAARQRITLEEFHADLAAFIKELRHENLNLNDAWQASNYADSWVRSQFLARPMVDGRFVYEPTAATARVLAFLDTFTVERTNLNSSRLNTLLTSLETLSFQTDPNPDSRIAMLEAEIAERQGEIAALKNGQSPAVLSDDSAVAATRSVLDLASSLPADFKRMRDGVELMLHTIRTEIMESSVTKGVAVGQVLEGDKALRNTAEGATFQGFTEFLNDPVQQARFRQSVNEVLERNFTEQLSSEERSNLATLVKEMRRQAADVHTIYGRLSESLHTYVQSDEFKESVLLRKAIHAAEQAVAAAALGTRTPVTAPLLYAPEFETLAGLGIFNPDDHVPPPKLAAPPVLSDADIHRTPVTPAPDMPALHAAVGLARRSRNGSASLADVYAELPAELRHINTIRGLILAARSTDQGLDEGGTETLRFTQIDGTERTARVPLITFTKDTAP
>NZ_CP012477.1|WP_054009176.1|20304_23925_-|TM0106-family-RecB-like-putative-nuclease
MFLLDSPAGGAAPLIFSASDLVVASECEYRTLRILDEKLGRADKPGFPQDAMLQRASELGDAFEHKILNELITEHGVWDPATGRGVKVIDRGPLSWSGLEAKREETLAALRGGADVVFQATFFDGSLVGFADFLVKQPDGGYAVWDTKLARHARVSALLQLAAYGDQLKKYGIPTAPVTTLVLGDRSRSDHPMPDLLPVFRERRDHFLALTARHRAQPRQVAWRQEGVSYCGRCDYCAQQVREHQDLLLVNGMTGSQRSKLLTRGITTVDELADMPAEAANGPLSRLRDQARMQLGRETVDGSAFAGPDAHPVSYKVLRNSVSHLPAPSDGDIFFDFEGDPLWQDPATEKWGIEYLFGSIEAPVPGTPAGTKEVFKPFWAHSVSGERQAFVDFLAYVQTRRERHPDMHVYHYAPYEKSALRNLSVFHGVGEDTVDDWLRTGLLVDLLDTVRQSVRISEASYSIKKLEPFYMPAARSGDVKDAGASVVAYALYCAARDAGLAGDTARAAEAEQILQSIADYNEYDCLSTLRLRDWLFQIGGATVADTWTAGSGKLEVAEAKEGGYEPTEDELKLQAFIENLRGQKDRAPSNDETAIEMVAAAAGYHRREDKQFWWGHFDRLGSAVDDWSEERNIFRVQSAEVVEDWAKATPRSKTETRTVRLRGTSTEGSDFRPGSSWFGMFDAPLPEGLGEDSENPRQRDGLFNVTIVADETDPETPDLDTLLVTEKSTMKVPAYQQLPMTLTPNKPVPTASIRAALAALANTVGNNLPHLPKHPGLEILRKAAPRLDDGGSLPSAVVPSDGHSLQQVDYIGAITDAVRRLDYSYLAVQGPPGTGKTHVGSHVIANLVAAGWKVGVVGQSHAVVENILRAAIEKAGVDPQRVGKKLAAPHEVPWEIKDDKQFGRLLGAEGGALIGGTAWTMTGANVPAGSLDLLVIDEAGQYSLANTLAVAQAAKRLLLLGDPQQLPQVTQGSHPAPVDESALGWLSAGHATLPAELGYFLADSWRMHPELCSAVSQLSYDGKLESAPAASLRHLAGWPAGVETVMVGQPADGEGGGVQSSPAEAAEVVAQAKAHLGLMWTPGPGAAPRPLTQEDILVVAAYNAQVHLVRTTLDAAGLSGVRAGTVDKFQGQEAPVVLVTMACADPSGAPRGMEFLLNRNRINVAVSRGQWRAVIIRSPELTNFMPTKPSGMAELGAFIGLCNRGD
>NZ_CP012477.1|WP_082368763.1|24421_25480_+|ABC-transporter-permease
MKNTISTAPPDTLDAVVVSEVPLPTDVVAQPATKAAGTNPWVSYLTRRLMRLVASVVVLVTAAYLMVRLLPGDPARLSLGPEATAEQVALRRAELGLDTSVVTQYFHFWENLFHGDLGMSYSTRLPVFDVIAQRMPATLEIAVLSIIVILVVGIPLGMAMGEATRGGRNRWLDAVFSSITGLLTVAPVFVIAAISIYMFAISSPVFPVAGRSGPSSYVLPVLALSLSSTCALARIVRAETFNVLEADYVRTARAKRMRKARLFFHQVLPNLVTPTLTFAGLLFGGLIAGSVFVETVFAWPGMGPVVVGSITNRDYPLVQGIVLVYGVLILLINLVVDLLIAMFDPRSRITKL
>NZ_CP012477.1|WP_054009177.1|25488_27282_+|dipeptide/oligopeptide/nickel-ABC-transporter-permease/ATP-binding-protein
MTTLTTVAPATRRIRSFVHQMRTPTGAIAVIGTVLLVGLAIFAPVLWGAEASAVNVEVIARGPSAEHLLGTDSAGRDILLRTLVAARTSLMYGMLATLIGVTLGVIVGCLPSVLPQWIGRLLTAAVNMLVAFPALLLILFLAVFFGEGATGAVFALGLAMMPSIARLCQTMTASVVGRDFVSAAKVLGVPRTAILFRHIVPSITDVVVVNATMAAASSLTAMAGLSFLGIGLQAPAYDWGRLLSEGLDRMYVSPAAALAPAIAVTLAGVVLTMLGDTIGRAVGVTPVISMRKLAGLATRSAKSEPDREAVPDPEAVLSVRDLHVSFPALGKWVTPVRGVSFDIARGERVGIVGESGSGKSLTALAVAQLIEYPGRVEADAIVFDGVDYAGMSEREVASHAADLGLKMSMVFQDPMSSLNPSLRVGPQVAETARLHGGAIRSKASDQATDRLAEVGIQNPKMRARQYPFQFSGGMRQRAMIAMGLMGTPKLVIADEPTTALDATVQRTVMQVLDRVAVEHGSAVMFISHDIALVTGFCERVLVMYHGEIVEDISSADLVAGSAVHPYTKALVASIPTLTTDRSRPMATVADFMKEDKA
>NZ_CP012477.1|WP_054009178.1|27278_28082_+|ABC-transporter-ATP-binding-protein
MTTLEFRDLVVDFGRGPKTVHAVKGVSFIVPQGSTVGVLGESGSGKSTIARVAVGLEHATSGDILLDGRSLLQSNRAGRMHRRQVQMVFQDPYSSLNPRMTIGDSIAEGLHASYRRSKQRVPSRRKVEAETQELLSLVGLDSSYAAHYPRRLSGGQRQRVALARALGAKPSVLLADEITSALDVSVQGTVLNLFRKLQSELGFTALFISHNLAVVRYACDFVAVMDKGDLVEFGPVDEVLTTPKHPSTRALIEAVPEMGKPLFVPAR

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Crispr_ID: NZ_CP012477_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012477_2

175967-176073

Orphan

Consensus_repeat	Method
CAACGTTGAGAGCCCAGATAATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012477_2

>merge|NZ_CP012477|2|175967-176073|CRISPRCasFinder
CAACGTTGAGAGCCCAGATAATCCCCGCACCCTCCCAACACTCGCAAGCTCGTGTCGGGTCCCTCGGGCGCGTGGGCCCAAAGCAACGTTGAGAGCCCAGATAATCC

>NZ_CP012477|2|2|175967-176073|CRISPRCasFinder
CAACGTTGAGAGCCCAGATAATCC	CCGCACCCTCCCAACACTCGCAAGCTCGTGTCGGGTCCCTCGGGCGCGTGGGCCCAAAG
CAACGTTGAGAGCCCAGATAATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012477.1\|WP_054009710.1\|178530_179517_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239117
NZ_CP012477.1\|WP_054009291.1\|171377_171887_+\|DUF3180-domain-containing-protein	unknown	unknown	gnl\|CDD\|378650
NZ_CP012477.1\|WP_054009295.1\|176131_177064_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NZ_CP012477.1\|WP_054009290.1\|170745_171279_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|238269
NZ_CP012477.1\|WP_054009294.1\|175049_175964_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|376824
NZ_CP012477.1\|WP_054009298.1\|183375_185865_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|214361
NZ_CP012477.1\|WP_054009292.1\|171855_172419_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225937
NZ_CP012477.1\|WP_054009300.1\|187046_187634_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP012477.1\|WP_054009297.1\|182569_182902_+\|Lsr2-family-protein	unknown	unknown	gnl\|CDD\|378714
NZ_CP012477.1\|WP_054009711.1\|179729_180716_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP012477.1\|WP_054009299.1\|185978_186989_-\|agmatine-deiminase-family-protein	unknown	unknown	gnl\|CDD\|377332
NZ_CP012477.1\|WP_192841604.1\|182325_182475_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012477.1\|WP_054009289.1\|170368_170749_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NZ_CP012477.1\|WP_054009293.1\|174081_175008_+\|DUF2520-domain-containing-protein	unknown	unknown	gnl\|CDD\|227782
NZ_CP012477.1\|WP_054009287.1\|165887_166439_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP012477.1\|WP_107503785.1\|177109_178522_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341047
NZ_CP012477.1\|WP_054009286.1\|164743_165835_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_CP012477.1\|WP_192841607.1\|168851_169412_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NZ_CP012477.1\|WP_082368779.1\|166677_168756_+\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_CP012477.1\|WP_054009712.1\|180863_182312_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778

Protein	Function_ID	Function_description	E-value
NZ_CP012477.1\|WP_054009710.1\|178530_179517_-\|nucleoside-hydrolase	gnl\|CDD\|239117	cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine and cytidine, E. coli RihB prefers cytidine over uridine. S. cerevisiae URH1 prefers uridine over cytidine. .	4.43517e-161
NZ_CP012477.1\|WP_054009291.1\|171377_171887_+\|DUF3180-domain-containing-protein	gnl\|CDD\|378650	pfam11377, DUF3180, Protein of unknown function (DUF3180). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	2.49235e-33
NZ_CP012477.1\|WP_054009295.1\|176131_177064_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	5.48525e-102
NZ_CP012477.1\|WP_054009290.1\|170745_171279_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|238269	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.	7.14275e-55
NZ_CP012477.1\|WP_054009294.1\|175049_175964_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|376824	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyzes the formation of pantothenate from pantoate and alanine.	7.25298e-132
NZ_CP012477.1\|WP_054009298.1\|183375_185865_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|214361	CHL00095, clpC, Clp protease ATP binding subunit.	0
NZ_CP012477.1\|WP_054009292.1\|171855_172419_+\|PH-domain-containing-protein	gnl\|CDD\|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	9.05011e-23
NZ_CP012477.1\|WP_054009300.1\|187046_187634_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.00163e-13
NZ_CP012477.1\|WP_054009297.1\|182569_182902_+\|Lsr2-family-protein	gnl\|CDD\|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	3.44845e-47
NZ_CP012477.1\|WP_054009711.1\|179729_180716_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	6.97801e-74
NZ_CP012477.1\|WP_054009299.1\|185978_186989_-\|agmatine-deiminase-family-protein	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	4.00943e-134
NZ_CP012477.1\|WP_054009289.1\|170368_170749_+\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	1.59028e-43
NZ_CP012477.1\|WP_054009293.1\|174081_175008_+\|DUF2520-domain-containing-protein	gnl\|CDD\|227782	COG5495, COG5495, Uncharacterized conserved protein [Function unknown].	3.00271e-48
NZ_CP012477.1\|WP_054009287.1\|165887_166439_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	2.25866e-85
NZ_CP012477.1\|WP_107503785.1\|177109_178522_-\|MFS-transporter	gnl\|CDD\|341047	cd17504, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide)-like multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of putative multidrug resistance (MDR) transporters including Chlamydia trachomatis antiseptic resistance protein QacA_2, and Serratia sp. DD3 Bmr3. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.5379e-42
NZ_CP012477.1\|WP_054009286.1\|164743_165835_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	2.13866e-60
NZ_CP012477.1\|WP_192841607.1\|168851_169412_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	4.07573e-118
NZ_CP012477.1\|WP_082368779.1\|166677_168756_+\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP012477.1\|WP_054009712.1\|180863_182312_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0

>NZ_CP012477.1|WP_054009294.1|175049_175964_+|pantoate--beta-alanine-ligase
MSITLVTTLADLKAVSAALLAATPGGAGTLGLVPTMGALHSGHATLAAAAVAANDVVVASVFVNPLQFGDANDLARYPRTTEADLALLDAAGVDIMFAPSVAEMYLGGEPAVRVTAGPLGNLYEGASRPGHFDGALTVVAKLLHVGRPETGLAAPDAAGRPAYRAYFGQKDAQQLALVRRMVADLNFPVDIVGVPTVRDDDGLALSSRNRFLSAEQRESALVLSRALRLLAGRAAAHEPLDVASAAELIRSAPGVELDYLEVVDPQTLAVRAENCQDTPFTGEALALVAATVGPVRLIDNLPLG
>NZ_CP012477.1|WP_054009293.1|174081_175008_+|DUF2520-domain-containing-protein
MIKPGRLGVGIIGAGKVGAVLGAALRAAGHAVVGVSAVSDASRDRAELLLPGVPVLEIPDIVERSELVLLAVPDDALPELVAGLAKTGAWQAGQLVAHTSGRYGIGVLAPAKAAGAITLALHPAMTFTGMSLDLTRLADCTFGITAEPAMLPIAQALVVEMGAEPVVIAEADRVLYHASLAHAANHMVSIVAQAAQILGDIGVEAPNQVLGPLLRAALENALASGESALTGPVARGDAGTVAAHTQALREHSLDTGSPDIIDAYVALSSATAARAARRGLLSAASFQAVRDALSADDAGPDTGVDPAS
>NZ_CP012477.1|WP_054009292.1|171855_172419_+|PH-domain-containing-protein
MKDGGTRNLPRPQGSGTVHTSAIDPGDVTFLRVSNKLIIARLIQRGIGGLVFLAISALPLVLHLTGVWDSYPAVLAWAVPAAVLAIVLWVLALVPRQVHAIGYAERNDDLLIRHGIMFHRIMVVPYGRMQYVDVTMGPLERILGLSTIHLHTASPGTNAMIFGLPATEAARLREQLSARGEAKLAGL
>NZ_CP012477.1|WP_054009291.1|171377_171887_+|DUF3180-domain-containing-protein
MRTIRPAWLIAVTVVLAAAGFLATELTSRASQPLPVLPLSSLITMGLIVVVCLILGLKVRRWRDGNRKKFLDPLLAARTLVLAQACAYAGAVLFGWHAGIILDQLPTLGLRPDLGVIWRIVALLAGGIVMVAVGLMVERFCKIPPEDNDPDNTTKLREKHEGRGDEEFA
>NZ_CP012477.1|WP_054009290.1|170745_171279_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MTPVRPLTRVILALGSNLGERRGTLSAAVGDLVDRPEVRLRDVSPVVSTKPVGGPAGQPDFLNMVIAVDTTLDPYELLAHCQAVELAHHRVREVRWGARTLDVDIICYGELHSDDPVLTLPHPRAAERAFVLYPWSLMEPNATLAGRSVAALAADAADMPGIEHAELESLGGEFPPA
>NZ_CP012477.1|WP_054009289.1|170368_170749_+|dihydroneopterin-aldolase
MSAPAQTDIITLTGITAIGYHGVFDHEKRDGQPFIVDAVLHTDISAAAATDDLTKTAHYGEVAEVIAALIRGDAFDLIETLTVRIAEAILDGFPGISGVQVTVHKPKAPIQVPFGDVSITAYRGRS
>NZ_CP012477.1|WP_192841607.1|168851_169412_+|GTP-cyclohydrolase-I-FolE
MDLPRIEAAVREILLAVGEDPDRSGLEDTPKRVAKAYAEVFAGLHQDPADVLGTTFDISHEEMVLVKDIPFYSTCEHHLVPFHGSAHVGYIPSADGQVTGLSKLARLVDIYAKRPQVQERLTSQIADSLVEHLKPRGAIVVIECEHMCMSMRGVRKPGAKTVTSAVRGLLHEPATRAEAMSLILGR
>NZ_CP012477.1|WP_082368779.1|166677_168756_+|ATP-dependent-zinc-metalloprotease-FtsH
MNVKKLFKGPLIWIIVVLVLIGAGLATLAGGGPTTIQTSEALTLLKGDKVVSAKVFGSEGRVDMTLKDPYTTASGTKAGTDVQFYYGAYRSDAMVTIIDNSGLKSFDDQPASNNFWSSILSLLIPFAIIGLIFWFLFSRMQGGGSKVMQFGKSKAKLITKDHPQVTFNDVAGADEAVEELHEIKEFLQDPAKFTAVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKTNSPAIIFVDEIDAVGRHRGAGIGGGNDEREQTLNQLLVEMDGFDVKTNVILIAATNRPDVLDPALLRPGRFDRQIPVEAPDRLGREQILKVHAKGKPMAPGVDLNAVAKKTPGYTGADLANVLNEAALLTARSNAQLIDDRALDESIDRVMAGPQKRTRVMKELERKITAYHEGGHALVAAAMHNTAPVTKITILPRGRALGYTMVVPEDDKYSVTRNELLDQMAYAMGGRVAEEIVFHDPSTGASNDIEKATGTARAMVTQYGMSERIGAVKLGAAGGEPFLGGSAGHDRDYSESVAAIVDEEIRKLIDRAHDDAYEVLIENRDVLDRLALELLERETLNQAEIAVIFQDIRKPAERQVWLSKDSRPVSSLPPVVTDKERRDALAAGEPAPDSVSPQDQLANAHLQGEVDAPNRTPGIDLGGGDGEALPGRPS
>NZ_CP012477.1|WP_054009287.1|165887_166439_+|hypoxanthine-phosphoribosyltransferase
MDSQDVQADLKHVLYTKEQIDSRIAELAAAIDADYAGRDVLLVGVLKGAVMVMADLSRALHSHVTMDWMAVSSYGSGTQSSGVVRILKDLETDLMGKHVLIVEDIIDSGLTLSWLKANLISRGPASVEICTLLRKPDAAKVDIDVKYVGYEIPNEFVVGYGLDFAEKYRNLDFIGTLAPHIYE
>NZ_CP012477.1|WP_054009286.1|164743_165835_+|tRNA-lysidine(34)-synthetase-TilS
MTSAANHQPRRRLDPTVGKARAMVASLLGLTSTGKYRPVDNPPLVLVGCSGGPDSLALAAVTAFFATRGEIRVGAVVVDHQMQEGSAEVAARTAAKLRGLGLDPVQVRTVDLKHDGGGPEAAARAARFGALDAAARDLDAQTVLLGHTLDDQAESVLLGLARGSGTRSLAGMRPRRELYARPFLGLRRDETLAICEALDLDPWHDPANSDDAYLRVRVRQNVLPFLAAELGPGVRESLARTAMILGQDADLLDELAGAEYRRIAEPVAPGDGGPVHEIRLDADALRLLPPALRMRVLALSVVELGGYQPSQERLASAQALLERKGSAGPVQMAGKVSAYRISRSLGVPQDGAGYGKLVFRRSA
>NZ_CP012477.1|WP_054009295.1|176131_177064_-|ribokinase
MNSRRIIVAGSLNADLTIYTDRLPQPGETLHGNGFAVNPGGKSANQAVAAGRLGGNVTLIGAVGQDANGDMLVASTAGAGVDVSHVRRVTEPTGVAVISVDSHGENSIIISSGANGTLAPASMEPALFAGAGVVCLCLEVPFETVQAAAQAGHDAGATVLLNLSPYAPVADELARLTDVLLVNAHEASQFLGGASMPGADAPVGDWRDAVELFAGRGLKQVLVTLGSAGSVVLDSTNPAEPVVRIAPTVVTAVDTTGAGDAFTGAVAARLAAGDSLVAAARFASVAAALAATRKGTQTAYPSADEVAAKL
>NZ_CP012477.1|WP_107503785.1|177109_178522_-|MFS-transporter
MINKTSKAASVTALMVALLAACVAFQLNASMLSPALVTMGEELHTNQAVIGLSQTWFFTAAALFSLFLPRLSDIIGRKKVLLGMMILMAIGSAVSAMAPDITWLFVGRIIQGVSGPTVPLALIMLRSEVRDPKKYGVLMGLITAVNGGIAGIDSFVGGFMAQHYGFRSIFWLMVVLGAVAAALVAFLARESKPSEGTKMDWWGVLFIVVAVGALLTALNQASTLLGGFDAGILTQAIVLIVVAVIAFILFWNMEKRSNHPMVEIVHLRQRSTWATLLTTTLTMTGIFAVINGIVPAFVQAADPGFGIGATEMSLLILTPYALLGWVFGPITGRLAPTLGYTTVLRIGMIGSLVALAIIGFFGLHNLGLLITGTVLLGIMYAGTVNIMLNGLGVVHSPKGNPGFLPGMNAGAFNLGAGLSFLVLPAILVAAGSMGVVASYTTVIVVALVVTALGLAASLLIPKPVDAEVHA
>NZ_CP012477.1|WP_054009710.1|178530_179517_-|nucleoside-hydrolase
MHTPAGNESGTATAPRKIILDCDPGHDDAVAILLAHGNPNIELLAVTTVVGNQTLAKVTRNALSVGTIAGITGVPFAAGCDRPLVRTIENAPDIHGDSGMDGPAQPESKIELDPRHAVDLIIETIMAHEPGSITLVPTGGLTNIAMAARKEPRIVERVKEVVLMGGGYHVGNWSAVAEFNIKIDPEAAHIVFNEKWPVVMVGLDLTHQALATPDVVAAIEAVGTKPAKFVMELMEFFTKTYKDAQGFDYPPVHDPCAVAYVIDPTVMTTQKVPVDIELTGTLTLGMTVADFRAPAPADCNTSVAVKLDHEKFWNMVTDALVRIGEVEA
>NZ_CP012477.1|WP_054009711.1|179729_180716_+|LacI-family-DNA-binding-transcriptional-regulator
MVAARAGVSAATVSLVTNGKTAGRVSAENIAKVEAAIAELGYVVDGLGSSLAKGRSNIVILVAPDVSNPFFAKVIAGVREAIGDSFQLLLSVTDAGQTPSSADVRNLLSLRPAGLLVDAPSAQFLAELPAAGPMVLLDAAGVASDAPSVNFDVARGAEMLADHLGSLGHRTVAYLDSVTGTETFRVRREAFSRRAEALGMSVAASEATTIDVGTAAMAFAGAWPAWAKLGVTAVVCCTDTHAYGVLQEARVARLDVPGQLAVTGFDDLPYSETSNPGLTTLRLPAGELGKAAGEQLLRLLDREHIPASRLMLQGTLVVRGSTVAPGPD
>NZ_CP012477.1|WP_054009712.1|180863_182312_+|lysine--tRNA-ligase
MLVRLDKRAKLLERGGQAYPVGVGRTHTLEEIRAKYPELEADSTTGEIVGVTGRVVFVRNTGKLCFATLQSGAGTRLQVMLSLANVGEEPLADWKALVDLGDHVFVKGEVISSRRGELSIMADSWAMASKALRPLPVLHADLSEEMRVRQRYVDLIVRDTAREQVKTRSAIVKAIRDTLHGEDYIELETPILQLIHGGAAARPFRTHLNAFDQPMTLRIAIELYLKRAVVGGMDKVFEVGRIFRNEGVDSTHSPEFTMLEAYEAYGDQFSMAKIMQRIILAAADAVGSRSIETERGTINLDGEWPWLPVYQGLSEGVGQEITPETTAEQLRAIAVAHDVKIDQAWDAEKLVVELFGEIVEPTLIQPTFVCDYPPSAQPLARPHRDNPNLIEAWDLIIDGKETGTAFSELVDPVIQRERLTQQSLAAAAGDPEAMQLDEDFLRALEYGAPPMGGLGLGVDRLVMLFTGVGIREAILFPLMKPE
>NZ_CP012477.1|WP_192841604.1|182325_182475_+|hypothetical-protein
MEYVAVIVPSLGVGVLFYFAMKAIFNADRSEREALARAEQESEHNSEHP
>NZ_CP012477.1|WP_054009297.1|182569_182902_+|Lsr2-family-protein
MAQKIHVTLVDDIDQSPADESVTFALDGINYEIDLSANNAEELRNALAKFIDAGRRAGGRAVRGRGPAAAPKGKSDVGEIRAWAKENGYDVHERGRIQAEIRNAYYAAQG
>NZ_CP012477.1|WP_054009298.1|183375_185865_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLNISLDGVREQVQEIIGQGQQAPNGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLGRVRQQVIQLLSGYQGKEPVASGGQQQEGTPAGSVVLDQFGRNLTQAARENKLDPVIGREQEMERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVRGDVPETIKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLDEYRKHIEKDAALERRFQPIQVQEPTVPLAIEILKGLRDRYEAHHRVSITDGALTAAATLADRYISDRFLPDKAIDLIDEAGARLRIRRMTAPPELKAMDGEIAAVKKRKEDAIDAQDFEGAAALRDDEQKLITARAEKERLWKSGGLDDISEVDEELIAEVLANSTGIPVFKLTEAESSRLLKMEDELHKRVIGQNEAIKSISQAIRRTRSGLKDPKRPGGSFIFAGPTGVGKTELAKALAEFLFGEEDALITLDMSEYSEKHTVSRLFGAPPGYVGYEEGGQLTEKVRRRPFSVVLFDEVEKAHADLFNSLLQILEDGRLTDSQGRVVDFKNTIIIMTTNLGTRDISKSVSTGFNSGSDTQTGYNRMRARVTEELKQHFRPEFLNRVDDVVVFPQLTQDEIIEIVDLMVARLEGRLADKGMGIVLTPAAKVLLATRGYDPAMGARPLRRTIQREIEDHLSEKILFGEIKSGDIVAVDVEGEGDDAQFTFVGTAKPNIPDAITASA
>NZ_CP012477.1|WP_054009299.1|185978_186989_-|agmatine-deiminase-family-protein
MPSECAPQERIWMAFPPLGETFGATDEDAAQARTAWVAVAHAVLEFEPVTMLADPRDAALARELLHADIDIVQAPLDDAWLRDAGPTFVLDEQGALGAVDWVFNGWGQQEWATWEKDAKLGKLVAELAGAQLIDSPMVNEGGGIQVDGEGTVLLTDTVQLDRFRNPGMSRNAIEAELERTLGATSAVWLPRGLYRDTQRFGTRGHVDIVATIPAPDTILLHRQHNPEHPDFFLYDVVRAAIEDSTAPDGQPWQVRDIPAPAVLKDNDGWVDYSYVNHLVVNGGVIACSFDDENDAVAAQILAEVYPGRKVVTVDAREIFAHGGGIHCITQHQPRSA
>NZ_CP012477.1|WP_054009300.1|187046_187634_-|TetR/AcrR-family-transcriptional-regulator
MALDNQTRILEACSSCIAENGVRGMRVQDVARKAGVSSGLLYYHFTDRDGLLAATLEYVNVSSLADHGTAASGDTGSFGAIRTLLLDEIRDDESVRAKSIVWNEIRAIAVFEPLLAEHLANSTKVWQDHLAGLLTQQSGIPQERADEIALLLTALVEGLSGRWLSGLITTEEARAALGRGLDSTLPREILTTTSQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012477_2	2.1\|175991\|59\|NZ_CP012477\|CRISPRCasFinder	175991-176049	59	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	175991-176049	0	1.0
NZ_CP012477_1	1.1\|4265\|114\|NZ_CP012477\|CRISPRCasFinder	4265-4378	114	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	4265-4378	54	0.526

1. spacer 2.1|175991|59|NZ_CP012477|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ccgcaccctcccaacactcgcaagctcgtgtcgggtccctcgggcgcgtgggcccaaag	CRISPR spacer
ccgcaccctcccaacactcgcaagctcgtgtcgggtccctcgggcgcgtgggcccaaag	Protospacer
***********************************************************

2. spacer 1.1|4265|114|NZ_CP012477|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 54, identity: 0.526

acaaacacaccacaccaccaaaacccaggccccacacacggggccgctcctgtttaacag	CRISPR spacer
acaaacacaccacaccaccaaaacccaggccccacacacggggccgctcctgtttaacag	Protospacer
************************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

640526 : 711505

Enterobacteria_phage(27.27%)

transposase,integrase

attL 662673:662687|attR 708613:708627

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_107503783.1\|640526_641756_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	5.1e-12	29.6
WP_054009615.1\|641752_642541_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	6.7e-50	43.0
WP_150116985.1\|642563_645878_-	hypothetical protein	NA	NA	NA	NA
WP_038466388.1\|646456_646747_+	hypothetical protein	NA	NA	NA	NA
WP_082368830.1\|646756_648232_+	type IV secretion system protein	NA	NA	NA	NA
WP_054009618.1\|648224_649688_+	hypothetical protein	NA	NA	NA	NA
WP_054009619.1\|649927_651142_+	hypothetical protein	NA	NA	NA	NA
WP_054009620.1\|651138_652950_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_054009621.1\|652962_653448_+	hypothetical protein	NA	NA	NA	NA
WP_054009622.1\|653457_654696_+	DUF1738 domain-containing protein	NA	NA	NA	NA
WP_054009765.1\|654707_656054_-	hypothetical protein	NA	NA	NA	NA
WP_150116986.1\|656839_660421_-	relaxase domain-containing protein	NA	NA	NA	NA
WP_054009626.1\|660387_660732_-	hypothetical protein	NA	NA	NA	NA
WP_054009627.1\|661210_661444_-	glutaredoxin family protein	A0A0E3T8B5	Gordonia_phage	4.0e-11	43.3
WP_054009628.1\|661484_662507_-	DUF4192 domain-containing protein	NA	NA	NA	NA
662673:662687	attL	NA	NA	NA	NA
WP_160318824.1\|663396_664020_+	hypothetical protein	NA	NA	NA	NA
WP_150116988.1\|664224_665094_+	trypsin-like peptidase domain-containing protein	A0A2H4JE36	uncultured_Caudovirales_phage	7.2e-21	28.0
WP_107503793.1\|665791_669175_-	DEAD/DEAH box helicase family protein	A0A097BY72	Enterococcus_phage	4.5e-18	24.8
WP_150116989.1\|669325_669991_+	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_150116990.1\|670016_670418_+	hypothetical protein	NA	NA	NA	NA
WP_160318825.1\|670555_671752_-	restriction endonuclease subunit S	J7I0U9	Acinetobacter_phage	4.2e-11	27.2
WP_054009633.1\|673747_674947_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_150116991.1\|675655_676309_+	hypothetical protein	NA	NA	NA	NA
WP_054009634.1\|676305_677799_+	hypothetical protein	NA	NA	NA	NA
WP_160318826.1\|678281_679526_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_054009636.1\|679551_680325_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	7.5e-46	38.8
WP_054009637.1\|680442_681132_-	Pr6Pr family membrane protein	NA	NA	NA	NA
WP_054009638.1\|681651_682278_+	hypothetical protein	NA	NA	NA	NA
WP_054009639.1\|682408_683467_-	DUF4192 domain-containing protein	NA	NA	NA	NA
WP_054009640.1\|683558_684536_-	hypothetical protein	NA	NA	NA	NA
WP_054009641.1\|684535_685015_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_054009767.1\|685001_685889_-	DUF2236 domain-containing protein	NA	NA	NA	NA
WP_054009642.1\|686344_686575_-	hypothetical protein	NA	NA	NA	NA
WP_054009643.1\|686710_687670_-	ribokinase	NA	NA	NA	NA
WP_054009644.1\|687666_688638_-	nucleoside hydrolase	NA	NA	NA	NA
WP_054009645.1\|688719_689454_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_054009646.1\|689525_690902_-	MFS transporter	NA	NA	NA	NA
WP_150116993.1\|691057_692554_+	sulfatase-like hydrolase/transferase	A0A2P0VMI1	Tetraselmis_virus	5.4e-08	26.1
WP_054009648.1\|693867_694197_-	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_054009649.1\|694243_694705_-	hypothetical protein	NA	NA	NA	NA
WP_054009650.1\|694965_695142_+	CsbD family protein	NA	NA	NA	NA
WP_054009651.1\|696255_696459_-	cold-shock protein	Q9AZD3	Lactococcus_phage	3.1e-15	56.2
WP_054009652.1\|696873_697281_+	response regulator	NA	NA	NA	NA
WP_054009653.1\|697411_697834_-	hypothetical protein	NA	NA	NA	NA
WP_150116994.1\|697830_698529_-	hypothetical protein	NA	NA	NA	NA
WP_160318827.1\|699026_699167_+	hypothetical protein	NA	NA	NA	NA
WP_160318828.1\|699239_699662_+	hypothetical protein	NA	NA	NA	NA
WP_054009656.1\|699880_700675_-	nucleotide-binding protein	NA	NA	NA	NA
WP_054009657.1\|700779_701214_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	3.2e-22	48.2
WP_082368837.1\|702004_702829_+	hypothetical protein	NA	NA	NA	NA
WP_150116995.1\|702821_703463_+	hypothetical protein	NA	NA	NA	NA
WP_150116996.1\|703650_704403_-	hypothetical protein	NA	NA	NA	NA
WP_150116997.1\|704553_705591_-\|integrase	phage integrase family protein	NA	NA	NA	NA
WP_082368838.1\|706544_706883_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_082368839.1\|706879_707167_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_082368840.1\|707350_708139_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-22	29.4
WP_107503784.1\|710607_711505_-\|transposase	IS5 family transposase	NA	NA	NA	NA
708613:708627	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012479

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012479_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012479_1

167876-167956

Orphan

Consensus_repeat	Method
CCCGACCGCTCCCCAACCTCGTTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012479_1

>merge|NZ_CP012479|1|167876-167956|CRISPRCasFinder
CCCGACCGCTCCCCAACCTCGTTCCTCGGTCGGGGCCCCTCGCGGTCGTGGCCCCACCCGACCGCTCCCCAACCTCGTTCC

>NZ_CP012479|1|1|167876-167956|CRISPRCasFinder
CCCGACCGCTCCCCAACCTCGTTCC	TCGGTCGGGGCCCCTCGCGGTCGTGGCCCCA
CCCGACCGCTCCCCAACCTCGTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012479.1\|WP_054010031.1\|177745_178531_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_160318855.1\|173452_177703_+\|putative-Ig-domain-containing-protein	unknown	unknown	gnl\|CDD\|310150
NZ_CP012479.1\|WP_054010033.1\|179914_180817_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP012479.1\|WP_054010029.1\|170762_173315_+\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NZ_CP012479.1\|WP_054010020.1\|162498_163308_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP012479.1\|WP_054010028.1\|169811_170693_+\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238815
NZ_CP012479.1\|WP_054010022.1\|163984_164797_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270429
NZ_CP012479.1\|WP_054010018.1\|159252_161580_-\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|273765
NZ_CP012479.1\|WP_054010019.1\|161644_162478_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|234823
NZ_CP012479.1\|WP_054010032.1\|178732_179902_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP012479.1\|WP_054010027.1\|169146_169779_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054010016.1\|157034_158261_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP012479.1\|WP_054010026.1\|168049_168937_-\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NZ_CP012479.1\|WP_054010023.1\|165078_166971_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP012479.1\|WP_054010034.1\|180957_181416_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP012479.1\|WP_082368919.1\|167052_167454_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240046
NZ_CP012479.1\|WP_054010021.1\|163294_163954_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP012479.1\|WP_054010035.1\|181567_182764_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP012479.1\|WP_054010025.1\|167527_167863_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|235016
NZ_CP012479.1\|WP_054010017.1\|158251_159145_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|227099

Protein	Function_ID	Function_description	E-value
NZ_CP012479.1\|WP_160318855.1\|173452_177703_+\|putative-Ig-domain-containing-protein	gnl\|CDD\|310150	pfam05345, He_PIG, Putative Ig domain. This alignment represents the conserved core region of ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to (pfam02494) and (pfam00801) suggest an Ig-like fold (personal obs:C. Yeats). So this family may be similar in function to the (pfam02639) and (pfam02638) domains. This domain is also found in the WisP family of proteins of Tropheryma whipplei.	0.00156625
NZ_CP012479.1\|WP_054010033.1\|179914_180817_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP012479.1\|WP_054010029.1\|170762_173315_+\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP012479.1\|WP_054010020.1\|162498_163308_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.26761e-133
NZ_CP012479.1\|WP_054010028.1\|169811_170693_+\|inositol-monophosphatase-family-protein	gnl\|CDD\|238815	cd01637, IMPase_like, Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.	1.56365e-41
NZ_CP012479.1\|WP_054010022.1\|163984_164797_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270429	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold. This subgroup includes cystine-binding domain of periplasmic receptor-dependent ATP-binding cassette transporters from Neisseria gonorrhoeae and Bacillus subtilis and their related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.768e-109
NZ_CP012479.1\|WP_054010018.1\|159252_161580_-\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|273765	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c., oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.	0
NZ_CP012479.1\|WP_054010019.1\|161644_162478_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	4.89398e-108
NZ_CP012479.1\|WP_054010032.1\|178732_179902_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP012479.1\|WP_054010016.1\|157034_158261_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	3.01016e-89
NZ_CP012479.1\|WP_054010026.1\|168049_168937_-\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	5.34147e-49
NZ_CP012479.1\|WP_054010023.1\|165078_166971_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.64237e-157
NZ_CP012479.1\|WP_054010034.1\|180957_181416_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.3173e-16
NZ_CP012479.1\|WP_082368919.1\|167052_167454_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240046	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.82771e-44
NZ_CP012479.1\|WP_054010021.1\|163294_163954_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.30618e-80
NZ_CP012479.1\|WP_054010035.1\|181567_182764_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.88776e-95
NZ_CP012479.1\|WP_054010025.1\|167527_167863_-\|YnfA-family-protein	gnl\|CDD\|235016	PRK02237, PRK02237, YnfA family protein.	5.32612e-49
NZ_CP012479.1\|WP_054010017.1\|158251_159145_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|227099	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only].	6.99081e-48

>NZ_CP012479.1|WP_054010025.1|167527_167863_-|YnfA-family-protein
MTIAKTIALFVLAAVAEIGGAWLVWQAVREDKSWWWAGLGVVALGAYGFIAALQPDANFGRVLAAYGGVFIAGSLVWAMIFDKFTPDRWDVIGALICLSGVSVIMFAPRPA
>NZ_CP012479.1|WP_082368919.1|167052_167454_-|NUDIX-domain-containing-protein
MKNVLKVSAVCVYDPAGRLLTVRKSGTGKFMHPGGKPELGESAAEAGSRELAEEIGIRVDPATLELMGVWTGKAANESNTDIEATVFTAPGTWTNVEPAAEIAELRWLDLAAADDFDDFAPLLTEFVLPRLTA
>NZ_CP012479.1|WP_054010023.1|165078_166971_+|ABC-transporter-ATP-binding-protein
MSMEGAAWSSLWSTMRSDKSSSGISKDTLRRTIVFAKPYSRKLLVFVVLSVVSAALAVATPVLAGQVVDAIVAKSAVDVVVRLALLIALVAVLDAGLSLVIRWISANLGEGVILDLRTAVFDHVQRMPIAFFTRTRTGALVSRLNNDVIGAQQAFSGTLSGIVSNSVQLILTLIVMLNTSWLVTLLALVLLPIFLMPARRFGRRLAGLRREAADLNADMSTQMTERFSAPGATLVKLFGRPAEESREFASRASRVRDIGVRTAIMQFVFFTALMLVSSLALALVYGLGGTLAIGGTLNAGDVVVLALLLTRLYAPLTALANARVDVMSALVSFDRVFEILDLKPLITEKPDAVTVPAGPLSVEFSDVRFAYPSADKVSLASLEDVAVLDTRGGDEVLHGISFRAEPGQTIALVGSSGAGKSTIAQLLSRLYDVDSGTVRIGGVDVRDLSFDGLRAGVGMVTQDGHLFHETIRSNLRLAKPDATDEQIWDVLHRARLEDFAKALPDGLDTVVGERGYRLSGGERQRLTIARLLLVQPAVVILDEATAALDSTNEAAVQAALGEALEGRTALVVAHRLSTIRSADSILVVEGGNIVEAGTHDELIAGAGRYAELHDTQFAQAVAAVADAEDN
>NZ_CP012479.1|WP_054010022.1|163984_164797_-|amino-acid-ABC-transporter-substrate-binding-protein
MNRRTFGFVGMLAAASIALAACGGTSGGSSAPAGPDTSLSSVKSAGEIVFATEGTYKPFTYHANGAGALTGYDVDVAEAVAAKLGVKAKFQETQFDSIFAGLEAKRFDAVANQVTINAARQAKYDLSTPYTVSQGVIITKDDNSSIKSFDDLKGKTTAQSLTSNWYTLATQSGANVQNVEGWAQSVSLLKDGRVDAIVNDKLTFLDYQVSNPNSGLKIAATTKDSSDSAFAFRKGSTALTSAVDSALASLEKDGTLAKLSKKYFGEDVSK
>NZ_CP012479.1|WP_054010021.1|163294_163954_-|amino-acid-ABC-transporter-permease
MDANLFWSSLGPLLLGAVKGTIPLALASFALGLVVALLVAMMRISSNKLANGVGRIYISIIRGTPLLVQLFVIFYGLPAVGVMINPWPSAIIAFSLNVGGYAAEIIRAAILSVPRGQWEAGHMIGMSRGQTLLRIILPQAARVSVPPLSNTFISLVKDTSLASLILVTEMFRVAQQVAAFSQEFMLLYLEAALIYWVICLVLSTAQSQLEKRLDRYVAH
>NZ_CP012479.1|WP_054010020.1|162498_163308_-|amino-acid-ABC-transporter-ATP-binding-protein
MSPTEPVLQVRGLSKSFGANTVLRGIDLDVPRGKVVALIGPSGSGKTTILRSLNGLETPDGGTVTVSAGAGPAGGAGVGGPATALTVDFAGKVSPKEVAALRDRSAMVFQHYNLFPHMTVLQNVIEGPVQVQKRPRAEVVAEAESLLARVGLLEKKDAYPFELSGGQQQRVGIVRALALRPQLLLFDEPTSALDPELVDDVLAVIKELADEGWTMVIVTHELAFARQTADEVVFMDGGVVVERGPASQVLRAPKEERTAQFVRRLLHEI
>NZ_CP012479.1|WP_054010019.1|161644_162478_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MGRLIQRVKATRIDVAAGRRVLREEALAVEEPLEIRLGHESFTVTMRTPGDDFDLVAGFLVSEGIVFEAEQLISLRFCAGEDENGRQTFNVVEAQLRPDVVMPPESAQRHVLTSSACGICGTASIDAVHKSSHFGMGSPVDGPLVPAAVLAGLPDALRDQQKLFEKTGGVHAAGLFAADGELLILREDVGRHNAVDKVIGAAFRDKQLPLANTILQVSGRASFELVQKAAMAGVPILAAVSAPSSLAVELAESTGVTLVGFSRGNTMNVYTHAERVA
>NZ_CP012479.1|WP_054010018.1|159252_161580_-|FdhF/YdeP-family-oxidoreductase
MAGKAPQENIDEHHLTVGRVKKVAVGIPGIMHTMEVSLNQMGALRTAQTLLKVNQKDGFDCPGCAWPEGDKRHAAEFCENGAKAVAEEATKRRVPPSFFAEHSVHELRDWDDFRLGQQGRLTDPMFLAAGSDHYVPVSWERALGLLADELKALDDPNEAIFYTSGRTSNEAAFLYQLMVRGLGTNNLPDCSNMCHESSGSALTETIGIGKGSVSLEDMYKAELIIIAGQNPGTNHPRMLSALEKAKKNGAVIVAVNPLPEAGLMRFENPQTVRGLVGGGTPLADDFLQIKLGGDQALFQGLGKFLLEEQRRPGSSREGRVFDTAFIEAHTAGLGEYLKELETVSWDEIVTASGLSEAQIRATGQRLLASKATVVCWAMGLTQHKHSVATLKDVVNVLLLQGNIGKPGAGVCPVRGHSNVQGDRTMGIFERMPAAFHDALDREFAFASPRAHGYDTVAAIEAMRDRKARVFMGLGGNFVRATPDSNVTEAALGGMALTVQISTKLNKSHLITGRQALILPTLGRTERDTQSGGEQRVTVEDSMSAVHASRGRLTPASGSLLSEVAIICRLAALLFTNDDGGTRAGAPAVDWMALAADYSRIRSHIAAVVPGFADFEAKIDRPGGFILPHGPRDSRSFATDSGKAQFTANTLEYPKVPAGRLLLQTLRSHDQYNTTIYGKDDRYRGIKGGRRVVFVNQADLDSFGLADGAMVDLVSEWKDGVDRRASDFRVVAYSTPVGCAAAYYPETNVLVPLDSKADVSGTPTSKSVVIRLEPVA
>NZ_CP012479.1|WP_054010017.1|158251_159145_+|alpha/beta-fold-hydrolase
MDVSGAAAPAPLAFKCTDGRVLHGQLFAVPDGVARRGTVVIASATAVKAGYYSRYAAFLAANGYAAITFDYRGIGASRGGSLRGQQMRWYDWGRLDIDAVLAWALEHADGRPVHFVGHSYGGFGVGLAGNAAGVSRILTVGAQHAYWRDLRFRHQLGHWGRCLVSVPLVALFGYFPCERLGVMEDLPRGVALDWARSRKDFTAAATGDVLAELRARQHAVTAPILAVAPTDDSYATPAAMERALRYTPNSKSRILRLRPEQYGETSLGHFALFHSRFRHTFWEQSLAWLRDGTWPDR
>NZ_CP012479.1|WP_054010016.1|157034_158261_+|molybdopterin-molybdotransferase-MoeA
MESAPEAPSEQAEPIRALPHTWEEARALAYGVAEPLPAHEVPLAQAAGRKLGADVLARHDMPHYASSAMDGWAVAGSPPWILAEPGRRLTAGQAVPIVTGGTIPAGAKAVLRSESGTLSTDDDGLPVLVRGGAARPGEPKNGQHIRPAAEEAATGEVLVKAGTTLNPAHLALAALGGLDEVTVLGKPAVKLVLTGDEVVSAGIPAAGLVRDAFSPQLGGVVELLGGSVTGVQRAADTLEELLAALADTEHDPADVVITTGGTGRSSADHLRSAIAEMGGTLHIGSIAMRPGHPTLLAELPDGRFLVGLPGNPLAAMIALLTVAAPLLARLGSRPMPGTFEVACGSPIKEYPGPTRLMPYRLVYGLASPCSFTDSAMMRGLAAADGVMVVPPHGAKMGESLTAIALPWT
>NZ_CP012479.1|WP_054010026.1|168049_168937_-|EamA-family-transporter-RarD
MSTRNASRGVAVSVTASALFAVIFLLAGTLHGWGAEEIFGWRIVLTLATLAVVLPLAPWGRAEVRALAGKIRNRPVLVLPGIFAAGLVGVQLWLFMWAPLHGMALSVSFGYFLLPLSMVLAGRLFFRDKLSPLRKLAVAAAAIGVLHAALAGGLDWPTLLVCLGYPVYFVLRRKTGFDTLGAFAAELLVLLPAGLCFIAAGPHGVAGVTPGVDAVSVAAIGILGGVAMLLYLLASKWLPLSLFGLLGYVEPVLLVGVSVLLGETLGWAALLTYGPILLALVFLALDSRRRTPRLP
>NZ_CP012479.1|WP_054010027.1|169146_169779_-|hypothetical-protein
MAKTPAQRAAKHGEHATPASSAVVNPSIQRTPAKAQGNPNLILIAGSVASLFLFWYFHVLTLIQMTDLSGGLAMPDSMVFGFGTAHVEALRAAMNADAFGQLQFVHKTAGALCPLVFALTAMMMIAVNVAKRSLRRLLWAVPVLFVLVQLGANIAIDSMLSAKTLDAGTVTLASTLVVASWILLVASLAALGVALFVGRKSKIAKAAAAA
>NZ_CP012479.1|WP_054010028.1|169811_170693_+|inositol-monophosphatase-family-protein
MAETLDPRLNDADLAAALVRHAGRLALAMRERGLRSLQDTATEKSNVSDVVTAADLAAESYVFEQLRRCRSDDSILGEEGAGFLGTSGRSWVVDPVDGTYNFFSGSTYWCSALALTETSASETVPQTAPRMEGASGFSDAEVLLGAVYQPQEDKLWLGGTLQPSTLNGRPIHVDSRDHVGQLSAGTYIHPKWLADPNAGTPWQRAAQLPATLRMLGSGSCDLGRVAQGELGVWFQHSAPAWDWLPGKGIVRAAGGDTGVVRVNGLDWFVAGPARAVAALAAALESGGLETREP
>NZ_CP012479.1|WP_054010029.1|170762_173315_+|DNA-helicase-PcrA
MDMLFDPYANKPKAAARNGAGLPAWQPADHDDPGADAPEFGDPEFTTPEPGPGFDAGYGAAPGAGSRWPSPATLLEGMNPQQEEAVVHAGSPLLIVAGAGSGKTRVLSHRIAYLLATGRAHPGEILAITFTNKAAAEMRERIGALIGDAAKTMWISTFHSSCVRILRREAKVIGLNTNFSIYDSADSLRLITLVAKNLELDPKKFAPKAIMHKISALKNELIDDDENSLNTNFNEPFDAAVAEVYKGYTQRLRQANAMDFDDLIAQVVYMFRAFPGVAESYRRRFRHVLVDEYQDTNHAQYALVREIVGEEASTTGIGPAELTVVGDSDQSIYAFRGADIRNISEFEKDYPNAETIKLEQNYRSTQNILSAANAVISRNPNRREKRLWTAEGDGEKIIGYVAESEHEEARFIAAEIDRLQDETDLRPGDVAIFYRTNAQSRAIEDILVRVGLPYRVVGGTRFYERKEIKDALAYLRALVNPDDDVNLRRILNEPKRGIGDRAEGAVAALAERERISFSAALARADDAPGIASRSLNAVNAFAKMMGDLGEVAASSGPATALEAVLEQTGYLEALRSSSDPQDESRVENLAELVAVVREYERDNPEGTLGEFLEQVSLVADADQIPDAPGGSEADAAAAVAEAQRLGVVTLMTLHTAKGLEFPVVFLTGMEHGLFPHSRSATDPKELAEERRLAYVGLTRARKRLYLTRSEVRSMWGQSQYNPASQFLDEVPSELIDWKREGTSRIAPPAGGGFGSSRYSGSSWGAGSAVGGRDSGTLPPSLSARTAAGRVQPQKEVISVGVGDKVNHTAFGNGTVLAVQGAGDKTVATVQFPIGEKRLLLRYAPLTKTEV
>NZ_CP012479.1|WP_160318855.1|173452_177703_+|putative-Ig-domain-containing-protein
MSLATAGIAALPAQAASGSAQINITNSSPTMDRLTPGTCAGATPSNYQVMPFHTYGVGNMTMSFTVSSSAPVTAMLYQGAFQPDQPLNGCYVNSWSRGANDNRVQNAGYNNSRFPAFAEQFWYLVLASDNPGSGVTGNANVTTNLGFVSVDNVPVITTASLPNGSVNAAYSATVDAVFGEKPNTFAVTGLPAGLSMDTNGAITGTTKASGTFSPAVTVTDTRGKSATATLPLTITAPTVSVTPSTLPTPTVAQPYSQTVAASGGTAPYTYAVTAGSLPTGLSFNTSTGTISGTPTAGGTSNVTVKATDADGFSGARAYTVTVAAPTITIAPTTLPVMTRLVPVSTQLTAASGTAPYTFSVTSGALPDGLTLSAGGLLSGTPTAGGTSNFTVTATDSSTGAVTYTGAQAYSVTVAGPVKPTITFSPATLPNPQVGASYNQSVTATGGTAPYSYAVTAGTLPAGLSLANNGTISGTPTAGGTFSFTVRATDSDGFTADKPYTVGVAAAMISIAPFPFPTLTATEAVNTTFTASGGTAPYTFTAQGLPAGLSLSAGGVLTGTPTTPGPNFPTIQVTDSSTGTGPYGQSLPSFSFVVAPTISVSPTTVPNPQIGVAYSEAVTASGGSGPYSFSVTAGSLPAGVSLNAATGALSGTPTAGGSFNFTVIATGAGAFTGSRAYSMTVSAPVLTLTPAALPAMQALEPASATFGADGGTAPYSYAVSAGTLPAGLSLTGAGVFSGTPTTAGPYSFDVTATDSSTGAGPYTTKATYSGTIAAPQLPTITPTTLPAGRAGTAYSQGLTGGNGVAPFTFSVLPGVLPSGTTLSAAGALSGTPTASGDFSFDITVKDSRGRTSVLPYALSIVAPVIAVAPATLPDMTAYNPVFATISATGGVGSYTFSIKSGALPAGLALSAAGLLSGTPTESGSFPLTIKATDSTGGTGPFSGTMDYTLTVDPAVLPAISPSTIPAATAGVPYTVQFAGSDGVEPYAFNLTTGTLPDGVTLTGAGLLSGTPTVAGSFPITVTVRDGRTLETSANYTLVSNAPVITLDPATLPASDVDQAYSQQLGADGGTAAYSFSVASGTLPAGITLANDGVLSGTPTTPGTASFTVKATDALGFTGTRDYTLVMRPAPLTVGPATLPAPVPGTAYAAQLTTGGGVGPFTFAVSKGELPTGLNLDANTGAVSGTPTAVGSYTFTVTATDTATLGDTPVVTATREYTLDMPASVLTVNVDVNGDGTVDGAALPAAQAGMPYSVTLKGSGGTGPYTFALKASGGKGAMVPMAAAGLPQGMSLTSDGVLSGTPTASGDFAINIVITDLYGSTAETSVHMHVDPAAVEPTPTPKPTATPTATATPTAKPTAAPTATAGATATGTATASKPADAGLAGTGANGVLWLVVGGGAILILGAGAMVLARRRRSE
>NZ_CP012479.1|WP_054010031.1|177745_178531_+|hypothetical-protein
MLLTKPRMPGFAVSGCAAVSGRAAVSRRAAAGIMAVAASLALAGCITVPVPGAGTSTTPAPAAAKDYVERLKAAPAGKPADQQGGRAQFVTKDRNIACVFTSSRAGNLDQPWEANNYADTANAKAPTVPVVNCELAAYPAPVAADVTDTCSGTHIGYLGGTALLSPAAVSYGGCRSGPTAVEAAFGPGGTANGTLSRIPVLAAGTAMDSLGYRCAPLDDGVACANLAAGIGFFVSAGSYELLKPGSNAPASTAPASTAPAR
>NZ_CP012479.1|WP_054010032.1|178732_179902_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MDLFEYQARDMFEAHGVPVLAGIIAHTPEEAKAAAEKIGGVTVVKAQVKVGGRGKAGGVKVAKTADEAFEHASAILGMDIKGHTVHTVMIAQGADIAEEFYFSVLLDRANRNYLAMCSVEGGMEIEELAVERPEALARVAVDPAVGIDAAKADEIVAAAGFNAELAPKVAAAIIKLWDVFKKEDATLVEVNPLVRTGAGDIVALDGKVSLDENADFRHPHHLDLEDAAAADPLEAKAKAADLNYVKLDGEVGVIGNGAGLVMSTLDVVAYAGENHGGVKPANFLDIGGGASAEVMAAGLDVILNDPQVKSVFVNVFGGITACDAVAKGIVGALAELGSAANKPLVVRLDGNNVEEGRRILNEANHPLVTLAATMDEGADKAAELANASK
>NZ_CP012479.1|WP_054010033.1|179914_180817_+|succinate--CoA-ligase-subunit-alpha
MSIFLNKDSKVIVQGITGGEGTKHTALMLKAGTQVVGGVNARKAGTTVKHGDVELPVFGAVSEAVAATGADVSIVFVPPAFTKDAVVEAIEAGVPLVVVITEGVPVQDSAEFWALAQSKVDADGKQITRIIGPNCPGIITPGESLVGITPNNITGKGPIGLVSKSGTLTYQMMFELRDLGFSTAIGIGGDPVIGTTHIDALAAFEADPETKAIVMIGEIGGDAEERAADYIKAHVTKPVVGYVAGFTAPEGKTMGHAGAIVSGSAGTAQAKKEALEAAGVKVGKTPSETAALLREVYAAL
>NZ_CP012479.1|WP_054010034.1|180957_181416_-|MarR-family-transcriptional-regulator
MGIKDDAVEIRAQGWRTLAALHGLIEASMEKALQAAAELSVVEYTVLDALSRQDGWHMRMQQLGRATALSPSATTRLVNRLEDRGLLTRILCQDDRRGIYTELTPSGLELLKRARPVHDEALECALAEAALLPELAPLVVALPQLHAVVPSS
>NZ_CP012479.1|WP_054010035.1|181567_182764_+|MFS-transporter
MPLGLIALALGGFGIGLTEFVIMGLLPEVAADFQVSEATAGWLISGYALSVVIGALFLTAAVTRLPRKPVLAGLMVLFIAGNLVSAMAPDYSTMMIGRVIAALCHGAFFGIGAVVAADMVAPSKKAGAIAIMFTGLTAANVLGVPFGTLLGQHAGWRSTFWAITAIGVVALIGILALVPTTPHTRGAAGLRGELRAFKSRQVWLSITVTVLGYGGMFGAFTYIAFTLTDVTGFAATTVPWLLILFGVGLFIGNTLGGKAADRNLDKTLLLVLTMLAVILAVFALSATSQIMTIASLMLMGGFGFATVPGLQMRVMKFAAAAPTLASGANIGAFNLGNALGAWLGGAAITAGLGYTSPIWAGAGLTLLAVGVMAYAAANARNSPAREPLEATAVEPSHA

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Crispr_ID: NZ_CP012479_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012479_2

272797-272936

Orphan

Consensus_repeat	Method
GCTGAGCCGACAACCTCGGCAACTCCGTCCACGACGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012479_2

>merge|NZ_CP012479|2|272797-272936|CRISPRCasFinder
GTCGACCCGACAGTCTCGGCGACGCCGACCGCTGAGCCGACAACCTCGGCAACTCCGTCCACGACGCCAACCGCAACGACGGCGCCGTCGGAAACGCCGTCGGCTGAGCCGACAACCTCGGCAACTCCGTCCACGACGCC

>NZ_CP012479|2|2|272797-272936|CRISPRCasFinder
GTCGACCCGACAGTCTCGGCGACGCCGACCGCTGAGCC	GACAACCTCGGCAACTCCGTCCACGACGCCAACCGCAACGACGGCGCCGTCGGAAACGCCGTCG
GCTGAGCCGACAACCTCGGCAACTCCGTCCACGACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012479.1\|WP_038467205.1\|283006_283210_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP012479.1\|WP_054010108.1\|275488_276073_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|197775
NZ_CP012479.1\|WP_054010102.1\|268603_270631_+\|CocE/NonD-family-hydrolase	unknown	unknown	gnl\|CDD\|225487
NZ_CP012479.1\|WP_054010109.1\|276115_277009_-\|aminoglycoside-phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|270704
NZ_CP012479.1\|WP_054010100.1\|264816_265776_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP012479.1\|WP_054010112.1\|280787_282464_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|183199
NZ_CP012479.1\|WP_054010097.1\|259953_260808_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212492
NZ_CP012479.1\|WP_054010098.1\|261695_263096_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP012479.1\|WP_107503812.1\|277090_277771_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378924
NZ_CP012479.1\|WP_054012875.1\|260910_261699_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240568
NZ_CP012479.1\|WP_054010101.1\|266671_268546_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP012479.1\|WP_054010099.1\|263221_264814_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173868
NZ_CP012479.1\|WP_082368929.1\|265772_266675_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP012479.1\|WP_054012877.1\|279255_280791_+\|gluconate-transporter	unknown	unknown	gnl\|CDD\|129873
NZ_CP012479.1\|WP_054010111.1\|278043_279072_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP012479.1\|WP_054010096.1\|258349_259828_+\|family-20-glycosylhydrolase	unknown	unknown	gnl\|CDD\|119334
NZ_CP012479.1\|WP_160318860.1\|270653_271301_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379409
NZ_CP012479.1\|WP_054010105.1\|273565_273958_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054010106.1\|274017_274386_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054010107.1\|274466_275393_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566

Protein	Function_ID	Function_description	E-value
NZ_CP012479.1\|WP_038467205.1\|283006_283210_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	6.77815e-40
NZ_CP012479.1\|WP_054010108.1\|275488_276073_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	2.73125e-16
NZ_CP012479.1\|WP_054010102.1\|268603_270631_+\|CocE/NonD-family-hydrolase	gnl\|CDD\|225487	COG2936, COG2936, Predicted acyl esterases [General function prediction only].	2.67456e-120
NZ_CP012479.1\|WP_054010109.1\|276115_277009_-\|aminoglycoside-phosphotransferase-family-protein	gnl\|CDD\|270704	cd05155, APH_ChoK_like_1, Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase and Choline kinase. This subfamily is composed of uncharacterized bacterial proteins with similarity to APH and ChoK. Other APH/ChoK-like proteins include ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). These proteins catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	3.6699e-85
NZ_CP012479.1\|WP_054010100.1\|264816_265776_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.77282e-102
NZ_CP012479.1\|WP_054010112.1\|280787_282464_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|183199	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.	7.82019e-148
NZ_CP012479.1\|WP_054010097.1\|259953_260808_+\|SDR-family-oxidoreductase	gnl\|CDD\|212492	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs. Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.07979e-87
NZ_CP012479.1\|WP_054010098.1\|261695_263096_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.07645e-22
NZ_CP012479.1\|WP_107503812.1\|277090_277771_+\|alpha/beta-hydrolase	gnl\|CDD\|378924	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family contains alpha/beta hydrolase enzymes of diverse specificity.	4.46751e-12
NZ_CP012479.1\|WP_054012875.1\|260910_261699_+\|hypothetical-protein	gnl\|CDD\|240568	cd12962, X25_BaPul_like, X25 domain of Bacillus acidopullulyticus pullulanase and similar proteins. Pullulanase (EC 3.2.1.41) cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. BaPul is used industrially in the production of high fructose corn syrup, high maltose content syrups and low calorie and ''light'' beers. Pullulanases, in addition to the catalytic domain, include several carbohydrate-binding domains (CBMs) as well as domains of unknown function (termed ''X'' modules). X25 was identified in Bacillus acidopullulyticus pullulanase, and splits another domain of unknown function (X45). X25 is present in multiple copy in some pullulanases. It has been suggested that X25 and X45 are CBMs which target mixed alpha-1,6/alpha-1,4 linked D-glucan polysaccharides.	6.81355e-33
NZ_CP012479.1\|WP_054010101.1\|266671_268546_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP012479.1\|WP_054010099.1\|263221_264814_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173868	cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.13925e-177
NZ_CP012479.1\|WP_082368929.1\|265772_266675_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	9.19409e-74
NZ_CP012479.1\|WP_054012877.1\|279255_280791_+\|gluconate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.17191e-119
NZ_CP012479.1\|WP_054010111.1\|278043_279072_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	7.18965e-169
NZ_CP012479.1\|WP_054010096.1\|258349_259828_+\|family-20-glycosylhydrolase	gnl\|CDD\|119334	cd06564, GH20_DspB_LnbB-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	2.39639e-94
NZ_CP012479.1\|WP_160318860.1\|270653_271301_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|379409	pfam13977, TetR_C_6, BetI-type transcriptional repressor, C-terminal. This family comprises the C-terminal portion of proteins that belong to the TetR family of transcriptional regulators. The C-terminus represents the regulatory region, and does not include the DNA binding helix-turn-helix domain. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. One of the target proteins is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	8.47845e-16
NZ_CP012479.1\|WP_054010107.1\|274466_275393_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	1.3206e-44

>NZ_CP012479.1|WP_160318860.1|270653_271301_+|TetR-family-transcriptional-regulator
MTDTKQAGRPRAKSEVERQRHPTEVRRRLVIESARDLIADKGLFNVQIRDISRACGVSPGTITYHFRSLEEVLWEVVKAETAEFYIPLREAAASSKHDKSTQLFGFLSGLFRPDADTRRHWMIWLDFWSAAAREDSYGEWMNSHYEAWWDALTGIIEQGVADGEFTCDDPRNFAVSTSSVVDGLAIQCYSRKARISVAEAQEHLLRHVRGGLGLD
>NZ_CP012479.1|WP_054010102.1|268603_270631_+|CocE/NonD-family-hydrolase
MKITTEFPRTVTVMENVFIPMSDGAMLAATIWLPEDAVDRPVPVLLEYLPYRRGDWTAPRDAQRHPWYAGHGYASVRVDMRGSGDSDGFMADEYHLQEQEDGLEVIAWLASRPWSTGKVGMFGISWGGFNGLQIAARRPEALKAIVTVCSTDDRYADDVHYYGGALLGIDMAAWAGTMFAFQTRPPVPWRVGEKWEAMWNERLAGLQPFSEIWMSHQERDDYWQHGSVCEDYSDIQAAVLAVGGWADPYRNAVLRLVENLDAPAKGIIGPWSHQYPDIERTPGPNIGFLQETLRWWDHWLKDEDTGVMDEPALRLYHQESVRPATKYQVRHGAWVGLPSWPAPQISPVSYNFARDLRTLAAGPGGLVTVDTPQHVGVDAGRWFPFGNDSDLPPDQRGEDGRSVVFDSAVRTDDLNMLGFPRLNLRVSATTPRANIMARLTDVAPDGSSTLITRGALNLAKRDGMDRADDVVPGTWMDVSLEMTSISWTIPAGHKLRVALSTTYWPWLWPHGERGAITLDPAGCDLHLGHLAPSAFTGPQPVFAEPEQAAPLAVVAKPTPETMPEREVRYEPDTETWVLTVDPKYGGYRVYPDGMTYGEQAVEKYTISRNDPLSAMAESSWIIEMERGDWKVRSETESRITSTATHFRLFNKVKTYLNGNVHFEKTFEKEIKRTSV
>NZ_CP012479.1|WP_054010101.1|266671_268546_+|ABC-transporter-ATP-binding-protein
MSTATQETLAIDVRDLDIAYMSGKRRVDVLSGINVKLANGEVLGLVGESGSGKSTMAGVLLASLRTSSFVNSGTVHLAGVDVFKLRGKDLREFRASHVALVPQNAGAALTPTMRIGEQLAEGFRLDAASSASRESKRARAIELLDLVRLPNAAAALDKYPHQFSGGQQQRIGIAMALAARPKLLVLDEPTTGLDVVTQAAILDTLNRLHEELGMAMVLVSHDLGVIDKMCSQVAVLRRGKVVEFGSTRSVLKNPTHPYTKGLLASVPRVTVPGIPPSLDDAAIDAFDNGGDMPVVDTELFQRVAPQGTAPVLSIRGLSVDYNRKPKPGSAPTVLDVDLDVHAGEIVALVGESGSGKSTIANVVAGLQKRQTGELTLDGTTELAPTVAHRAKGVRRAIQIIFQNADTSLNPRRSVRDAVTRPLRLFNVKGLSAEEALAEVGLPGNFGQRLPGQLSGGQRQRVGIARAVSAGPTLVLADEIVSALDVSVQSSILRLMDRLSRENNIGFLFITHDLAVVRSVADRVVVLYLGRIVEEGSVAEIFGNVSHPYTKLLMNSVIEVGDDHAAAPAPGQDEVPAGPPAQGCPFASRCPLVMDICRTTRPPAVELSGTHSIRCHAPLEELSHA
>NZ_CP012479.1|WP_082368929.1|265772_266675_+|ABC-transporter-permease
MTSPTIVVENIQTSRGFLPGLGQVVRSILRSKSATLGFALVILQILLAVLAPLIAPGNPTENNPAAVLQLPGGPYPLGTDTLGRDILSRTLYGGQYALTVSFIATTLAVVLGTVIAGLAAFYGGWIDQVITRLLDSVLAVPAILAMLVLVTVFGSGPEVIVLAVVVVYTGGVTRVVRAAAMDIMPKDYIVAARARGEGVFYILSREVFPNILDVVLVEFAMRASWVVLLVSSLSFLGFGANPPTPDWGLMVAENRSLMAVVPLATLAPIVFLATLIVGLNLAADGLAKSLGVDRMKEILG
>NZ_CP012479.1|WP_054010100.1|264816_265776_+|ABC-transporter-permease
MLTRFVLPRLGWAVVTILLATILVFGAMQALPGDAATQILGQNATPDAVATLRRQLGLDQPPLERFISWLGHALTGNFGTSLVSGQPVGSEVGRALLNTSFLAGITIVVGFTLALVTGLVAGLCRDRWPDSLISTLALVGMSIPEFIVATLLVLAFSITIPIFPAVVVAGQNATIAELLPSMTLPSLSLMFVASAYIVRMMRTSVIDVMETDYVHTARLKGISMPRLVLKHVVPSAILPTLNVVAMNVAWLIGGVVVVESIFNYPGMGSLMIRSVQSRDLPTILLITVIGALTFVVCNLLADLAATLLNPRLRHPRNAK
>NZ_CP012479.1|WP_054010099.1|263221_264814_+|ABC-transporter-substrate-binding-protein
MEHLNTAAEKGIFSRRSVLAASGLAVVSAAFLTACGPGGSALPQASSGGSGALAKAGGTLRIARPPASQAETLDPASSLSAYEYLGALYNRLVRLDEKGVVQPDLAESWETSKDALTWTFHLRKGVQWHDGKPLTATDVVYTFAHMLDPETKSPQAGVLSPFITAKSATAKDAQTVVVALTSPNAEFASLMTGYNCYVIPAGSAATIGSTGIGTGPFKLASFTPAGPGKIVRNDGYFGDKPKLDTIEFSSIPDTQARVNALLAGQIDLISQTNLDYATSQTVLASSIATVSNVKNAQWYTVPMLNTSPEFKDRNVRLALAHAYNPKDVMQLAVHGNGTVARNNPVPPTEAYYLDYGLDYDPDLSKSLLKKAGHDSLSLDIWTSTYDSVLTPLALAMKGSVAGSGFNLNVKTSAADSYYTDVWMKKPLMTSYWYTGRPIDQLLNQIFRSGSSYNENAYANPAFDKILDQARATVDDAKRKTLYQDAQKFLIDDGGSLTPFFADRLVGLSKKVAGYKEYGFEFDYINIGLAG
>NZ_CP012479.1|WP_054010098.1|261695_263096_-|DMT-family-transporter
MASVRLAWLRRPDVLMVLTSAPTYVATSEVLKVMSPLDLTPIRFLLAAAIIGVYFAVRKRRFLLRKPDVLRIAGISILGYGAYGTLLNLGQTTVPAGTVSLLLNTSPVFAFVLGYLVLGERTSRRGVLGMGIATAGVAIITVFGPGDLGFDWNALVILAAALILAVFLIWQQPLLARIPPVEMVFWGCLIGGISTLPVAKFDVQLELWNARTVTALVVLVVCSTVLAYSLWNLTLSGTSVAEGGSLLFAVPVFSLLLGWMLLGQMPTAASVIGGCIALGGVLLLSRAQNVPHHPDKEEEVMTTPPVVEDVIDLAIREEQANALSDAVAKAVEQVGARLATISLWRPATADLVRVYTSLPEIYRLGGISAELGEDWTQQCVVRLESFIAESPAELQTDAFEHHDTLAALRLGAGINAVIDQNGHFLGCLNLMDSPGSYTHEHLRTAQAIADGLAPVLAEISATMAFG
>NZ_CP012479.1|WP_054012875.1|260910_261699_+|hypothetical-protein
MAAGSLAAELPNGGAVLAEAVARVPFTKEESELLSGGIPRGHKNLTKATADLVKAGWMTKGRSGWDITETGLKATVAFPTVDALTAALTDGTAVPAGTALPEKAVAKPAAKKAPAKAAAKTATKPATKAATPAKKAPAKPAAKKTVTKAAAPAAGVEHKDQPASVALAGDFGAVLGAVENWDPSHDAVQMRLDAHSGKWLLTTDLPAGTYSYKAVVNGSWDENYGAFGQPDGANHEFEHAGGAVTFHYDHATKDVLRAETLG
>NZ_CP012479.1|WP_054010097.1|259953_260808_+|SDR-family-oxidoreductase
MEPRTIVITGASSGIGEAAARTLAQTGDTIVVVGRSEQRTRAVAEDIGADYFLADFTRLDEVRELALALRIKYPRIDVLANNAGGIMGRRELTPDGFEKTLQVNHLAPFLLTRLLHDVLVASQARIINTSSVAHRLFGRLDIDDLDAAGKYSANRAYGNAKLANILFTKELHRRFAGTGLTTAAFHPGGVATNFSAGSTSFMRFAYGSSGARSYMLTPAQGAQTLVWLAIGEPGLDWESGGYFAKRKPARASRQANDVELARELWLRSEQMLAHWLPDPSSTGE
>NZ_CP012479.1|WP_054010096.1|258349_259828_+|family-20-glycosylhydrolase
MPSPDSTSRPQLARGPVVVPSLQRWTPRDGATHLGDGFVVEHSAELAELAATLVADVAEVAGLAGSTSGAGVGGLIVLALDPELEFPTDNAAALVEGYVLEVDGVVRITARTATGVYWGTRSLLQMLAASTSLPGGTAVDWPNYPVRGFMLDVGRRFSSPEAVRDYIRVLSWFKLNTFMIHLNDNEITKDTKRPWVMAQQAFRLASDAPWLAGLAAEDGSYDRADWDSFEDLAARRHVQLVPEIDAPAHSRSFIRWRPELGLNGGDSDMLDLAKPESTEMIKAVFDEFVPWFRGPAVHFGADEYARGHSEEYRTFFNAIGTHLRAQGKDPIAWGSLSAMSDGAGAPGPEGYNRDVVMCAWNKGWYSGRAAVADGFKVINTDDDLLYIVPFADYYHGQGLDARALFEAWEPHVFGDGFDLDPGHPQLLGAASAVWNDLVLLAYNERAVYDLVMPAFGVLAQKVWVGAVDGLGYEEFIAGNGLVAGWPGRELLG
>NZ_CP012479.1|WP_054010105.1|273565_273958_-|hypothetical-protein
MTRPHREIPSQRLALSVTTIAAPTKPQRSVLWALGITLLGWLLLAYPAVLLALLSYILISGSDGSGTSASSVVAGILGMVFVVCMVAAPVLLGLAVMKRLRRFWIPAVITWVLSIAAVIYVIVEWLLPLG
>NZ_CP012479.1|WP_054010106.1|274017_274386_-|hypothetical-protein
MTDHKNQPPRQPDRLLPQRSQAVGSTVTLVGWLVVIIPIIAMALLIFAEVTNPNAGLATVGKVALIFLGAALLFCMIAAPHLLGQAVIHRERGMWRAALWTGIPTVCVILYIVFRWLSSAAS
>NZ_CP012479.1|WP_054010107.1|274466_275393_-|NAD(P)/FAD-dependent-oxidoreductase
MQDVIIVGGGAAGLSAALLLGRSRRSVTIIDDGRPRNAPADGVHGFLTRDGVAPLELTRLGRADLAPYDVRIEDGIVAGAERTDNGFRVVLEDGTAFKARRVLVTTGLTDVLPDIPGLAERWGKDLAHCPYCHGWEIRDRAIGVIGNGSFAAHQALLFRQWSDNITLFLNDAPQTADVELVQLAARGIRVVPGTVRRVVSTDEAVSGVELDDGTTHAIQALTTQPRAVARAAFLTGLGLVPTTTPFGETIESDDVGLTAVPGVWAAGNVKDMKATVLAAAQGGAAAAVAINMDLMVEEVAEAVAAHSA
>NZ_CP012479.1|WP_054010108.1|275488_276073_+|helix-turn-helix-domain-containing-protein
MSDDTEQVLSGVGPRLKALRLQRNMTLAGLAAATGISVSTLSRLESGQRRPNLELLLPLARSYAVPLDELVGAPATGDPRVHLRPVRRNGQTIVPLSRGGSGGLQAFKHLLPGGDKLPSPEPKVHEGYEWMYVLRGQLRVVLGERDFVLKQGEAAEFDTRTPHWFGRATPESVEFLTLFGPQGERMHVRAAPAK
>NZ_CP012479.1|WP_054010109.1|276115_277009_-|aminoglycoside-phosphotransferase-family-protein
MLIEKLHLDEVDIETDAVAHMLARQFPQWSGCPLEPLYPAGTDNVMFNLGGHYAVRLPRTPSAARTLAKELAYPPMLAPLLPAAIPTIVATGVPTGAYPFTWTVSRWIPGRNPLPGHAPDAMPVRLAGFVKALHSIVPPAPTRDLQSYRGGPLAARDLETRAAIARCRGDFDTGRLTRAWDIALAAPPGTGPATWIHTDLQPGNLLVDRGTLSGVIDWGGLSIGDPAVDLIVAWNLLDHAGRRAFRDNLDVADGDWERGRGWALSIGLVAYPYYVDSNPALAAVSKYQIEQVLAELG
>NZ_CP012479.1|WP_107503812.1|277090_277771_+|alpha/beta-hydrolase
MATMVLVHGLWSDGSSWSRVITELRALGHDPVAAQLSLDTFDDDVASVRRTLATVAGPVLLAGWSYGGAVIGEAARGIESVEALAYVAAFAPAEGESVSGLSRRHPGSLIPAHVVVADDHTYIDRAHFGDVMGFDGSGEEFAVAAAVQRMVRIGLDRVNVARPAWLDLPSHYLLTTLDRAVPPALQREMAERMGATVTEIDAGHAPLLSRPQEVAAFLDGACAGLG
>NZ_CP012479.1|WP_054010111.1|278043_279072_+|GTP-3',8-cyclase-MoaA
MVARTVTDTLQRPLRDLRISVTDRCNFRCVYCMPKEVFGRDFAFMPKNQLLSFEEITRLARIAMAHGVRKIRLTGGEPLLRKDIEELVRSLAALRTPDGQPPDLAMTTNGTALAQKAAALKDAGLDRVTVSLDSLDDGVFQSMNDVAYPVAKVLHAIDAAADAGLGPVKVNMVVKRGLNDHDVVAMARHFRGTGHIVRFIEYMDVGESNGWKMDQVVPSAEVVAGINAVFPLEPVAANYGGETSQRWKYKDGAGEIGVISSVTQAFCSGCTRARLSADGKLFTCLFATAGHDLRALLRGGATDAEVEDALAALWGARSDRYSELRGANTRAVHKVEMSYIGG
>NZ_CP012479.1|WP_054012877.1|279255_280791_+|gluconate-transporter
MAIAAAADPSHEPWTGHDTRVLIMAAIGIAIVVLLIVFAKMHAFLALTIGSLFVGIASGISLDKVTASYETGVGGVLGYVGILIALGAMLGKLLADSGGADKVVETLLRGKPATLPWKMALIAGIIGIPMFFEIGLVLLIPVVMLAVRRTNGPAMRLGIPALAGLSVLHGFIPPHPGPLAAIGILHANVGITLGLGLIVAIPTVIVAGPLFGILAARMVPIGAAGAALAVTGGSTAAAPASLGGGKTGTRESTGTGRHGLPVEPDSGGVNNPRENHGEVHGRAQDPDATRTPSFGITLVTLLSPLVLMLIKAAADVWMAKGNPIHPLLDFIGDPVVALTVAVLLAMVTFGTGVGFSADVLTRKIGQSLLPIVGVMLIVGAGGGFKQVLVDGGTGTAIAKIAVAASLSTLLLGWIVAVLIRLATGSATVATVTAAGIIAPLASGLSPTHLALVVLAVGAGSLFFSHVNDAGFWLVKEYFGLTVGQTIKTWSVMETIISVMGLLLTWLLFSIL
>NZ_CP012479.1|WP_054010112.1|280787_282464_+|acyl-CoA-dehydrogenase-family-protein
MTANDAGPGPAGYPTHQVLNQPPPRVDVNEFTANQVLGDYVQSVGEAGTHYAEALADVGAAVGSAQFQEDARLAHKNPPVLHTHSKYGYRIDEVEYHPSYHRILGQAVAAGAHTSAWAQPGPGANARRAAAFMLFAQVEPGHACPVSMTHAAVETVKGNQAMAEHWLPRLYSRSYRPELAAGKPGALFGMAMTEKQGGSDVRANTTRAVADGGHFLLTGHKWFCSAPMSDAFLVLAQDDAGVGCFLVPRVLPGSSHGMANERNPFLIQRLKDKAGNRSNASAEVEFANTLGWRIGEPGRGVRAIMGMVGQTRLDCVLGTTAGMRQSVAEALWHARHRRAFGARLVDQPLMTNVLADLALEAEAATAVSMRLARAFDDDAGPAESAFRRLATAVTKYWVCKRGPNHAYEAMECLGGNGYIEDFPLAMRYREQPVLAIWEGTGNVIALDVLRAMATEPESVDAFFAELRLAAGEYDLFDNFGARLKELLAPVRQAPEDYAAQARTVVEKMALALQASLLIRFAPAAVADAFVVSRLGPDRSFNYGNLPASSDFAGILARA
>NZ_CP012479.1|WP_038467205.1|283006_283210_+|cold-shock-protein
MATGTVKWFNAEKGFGFISPDDQSQDVFAHYSAINSSGYRSLEENQKVSFDVEQGPKGPQAVNIQAI

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Crispr_ID: NZ_CP012479_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012479_3

727871-728012

Orphan

Consensus_repeat	Method
CGGTGGTCGAGCTTGTCGAGACCCCGTGGGCCCGCACCGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012479_3

>merge|NZ_CP012479|3|727871-728012|CRISPRCasFinder
CGGTGGTCGAGCTTGTCGAGACCCCGTGGGCCCGCACCGACGGCCGCGGGCGGCCTTACGGTCTCCTTGACGCGACCTACGGAAACACCAGCCCGGAGCCGGTGGTCGAGCTTGTCGAGACCCCGTGGGCCCGCACCGACGG

>NZ_CP012479|3|3|727871-728012|CRISPRCasFinder
CGGTGGTCGAGCTTGTCGAGACCCCGTGGGCCCGCACCGACGG	CCGCGGGCGGCCTTACGGTCTCCTTGACGCGACCTACGGAAACACCAGCCCGGAGC
CGGTGGTCGAGCTTGTCGAGACCCCGTGGGCCCGCACCGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012479.1\|WP_082368992.1\|731370_731925_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239535
NZ_CP012479.1\|WP_054010415.1\|734290_735505_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP012479.1\|WP_054010405.1\|723539_723908_+\|SPW-repeat-protein	unknown	unknown	gnl\|CDD\|367653
NZ_CP012479.1\|WP_054010416.1\|735557_736886_+\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100084
NZ_CP012479.1\|WP_054010406.1\|724062_724665_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP012479.1\|WP_054010409.1\|728560_729724_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173847
NZ_CP012479.1\|WP_054010404.1\|720925_721936_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP012479.1\|WP_054010407.1\|724805_726413_+\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415
NZ_CP012479.1\|WP_054010403.1\|717792_718437_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054010414.1\|733002_733578_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP012479.1\|WP_054010417.1\|737139_738105_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238509
NZ_CP012479.1\|WP_054012920.1\|719079_719550_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP012479.1\|WP_054010411.1\|730720_731374_+\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_CP012479.1\|WP_054010410.1\|729911_730718_+\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NZ_CP012479.1\|WP_054010413.1\|731980_732823_+\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NZ_CP012479.1\|WP_054012922.1\|733706_734174_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP012479.1\|WP_054012919.1\|718553_718961_-\|DUF4383-domain-containing-protein	unknown	unknown	gnl\|CDD\|379556
NZ_CP012479.1\|WP_082368991.1\|719768_720929_+\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NZ_CP012479.1\|WP_054010401.1\|715682_716408_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP012479.1\|WP_054010402.1\|716471_717701_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814

Protein	Function_ID	Function_description	E-value
NZ_CP012479.1\|WP_082368992.1\|731370_731925_+\|MaoC-family-dehydratase	gnl\|CDD\|239535	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.	8.31213e-68
NZ_CP012479.1\|WP_054010415.1\|734290_735505_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP012479.1\|WP_054010405.1\|723539_723908_+\|SPW-repeat-protein	gnl\|CDD\|367653	pfam03779, SPW, SPW repeat. A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices.	6.80364e-06
NZ_CP012479.1\|WP_054010416.1\|735557_736886_+\|site-2-protease-family-protein	gnl\|CDD\|100084	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.	7.41489e-43
NZ_CP012479.1\|WP_054010406.1\|724062_724665_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	6.52355e-14
NZ_CP012479.1\|WP_054010409.1\|728560_729724_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	1.16303e-156
NZ_CP012479.1\|WP_054010404.1\|720925_721936_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	1.40789e-148
NZ_CP012479.1\|WP_054010407.1\|724805_726413_+\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NZ_CP012479.1\|WP_054010413.1\|731980_732823_+\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	1.06479e-60
NZ_CP012479.1\|WP_054010414.1\|733002_733578_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	2.61836e-34
NZ_CP012479.1\|WP_054010417.1\|737139_738105_+\|hypothetical-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	0.000138586
NZ_CP012479.1\|WP_054012920.1\|719079_719550_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.2529e-24
NZ_CP012479.1\|WP_054010411.1\|730720_731374_+\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	6.23791e-124
NZ_CP012479.1\|WP_054010410.1\|729911_730718_+\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	1.33593e-104
NZ_CP012479.1\|WP_054012922.1\|733706_734174_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	8.65427e-13
NZ_CP012479.1\|WP_054012919.1\|718553_718961_-\|DUF4383-domain-containing-protein	gnl\|CDD\|379556	pfam14325, DUF4383, Domain of unknown function (DUF4383). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 137 and 164 amino acids in length.	4.42245e-19
NZ_CP012479.1\|WP_082368991.1\|719768_720929_+\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	1.27307e-172
NZ_CP012479.1\|WP_054010401.1\|715682_716408_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	3.29165e-46
NZ_CP012479.1\|WP_054010402.1\|716471_717701_-\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	2.29016e-56

>NZ_CP012479.1|WP_054010407.1|724805_726413_+|methylcrotonoyl-CoA-carboxylase
MEVLQSRVEPSSEAFVRNDAAQRELVAELRGRLRTAALGGPEKSRERHVARGKLLPRERVDRLLDVGSPFLEIAPLAANGMYDGASPGAGVIAGIGLVNGRHVVVISNDATVKGGTYYPMTVKKHLRAQEIALENRLPCIYLVDSGGAFLPLQDEVFPDKEHFGRIFYNQARMSAAKIPQIASVMGSCTAGGAYVPAMSDETVIVRNQGTIFLGGPPLVKAAIGEIVTAEELGGGDVHARISGVADHLAENDEHALQIVRDIVATLPPNPAPAWDVSNGVEPAADPAELYGAVPTDLNTPYDVREVIARLVDGSRFHEFKRNYGTTLVTGFATLHGHPVGIVANNGVLFSESALKGAHFIELCDQRGIPLIFLQNLNGFMVGKDYEHGGIAKNGAKMVTAVATARVPKLTVVIGGSFGAGNYSMCGRAYGPRFLWMWPAARISVMGGNQASSVLATVKREQLEGRGEEWSGADEDAFKAPIKAQYEGQGSPYYSTARLWDDGVIDPADTRTVLGLALDICARTPLPDTSFGLFRM
>NZ_CP012479.1|WP_054010406.1|724062_724665_-|TetR/AcrR-family-transcriptional-regulator
MSDPTATTRTRAKANRRTVLLDAAATLFAQRGFNGVSIEELGAAAGVSGPAVYRHFSGKQALLGALLVGVSEDLLTGGRAVLAAGHDDAATLRELIAFHVDFALAAPDVIRVQDRDLDSLNTEDRGKVRSLQRGYVELWVEVLGRLNPGKDAALRRFQAHAVFGLINSTPHSMHLQGRRLGTAVARPALESMAWAAVAGA
>NZ_CP012479.1|WP_054010405.1|723539_723908_+|SPW-repeat-protein
MKKWNRWQDYVAVIAGLYAALSTMWTTHTTGSLVMMIGAGALLVVAGVWNLMSPGTPVGEWVQMVLGALLFISPWVAGYTGHMGAAWTSWIAGAVAVIAAVLAVQPSMHQHTVGHDKGVPAH
>NZ_CP012479.1|WP_054010404.1|720925_721936_+|alpha-ketoacid-dehydrogenase-subunit-beta
MSTLTLTQAINAGLRKAMEADPKVVLLGEDIGTLGGVFRVTDGLKKDFGAHRVIDTPLAESAIIGTAVGLAYRGYRPVCEIQFDGFIYPGFDQIVSQVAKLHMRTHGQVRMPLTIRVPFGGGIGSPEHHSESPEAYFVHTSGLRVISASNPQDAFTMLRQAIASDDPVLFFEPKRRYHSKGEVDLDAELSLAPAMGAARVVAAGTDATLVSYGPLVATALDAARAAADDGISLEVIDLRSLSPIDYGTLEESVRRTGRLIITHEASETLGLGAEIAAAMTERCFNYLEAAPVRVTGFDIPYPPSKLEKHHLPDLDRILDGVDRALGRPNSLTGLEG
>NZ_CP012479.1|WP_082368991.1|719768_720929_+|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MQGGEKIVLDPATNSGDSPQPGIHQLIAADGTAVTDALLAPLVADVDDAQLLDLYSDMVVIRRIDFEATALQRQGQLALWPPMLGQEAAQIGSVRALEKDDFIFPTYRENGVAYCRGAKLAGIMSTWRGSANTGWDPYEFNMATPQIIIGAQTLHAAGYAMGLTMDGKESLAIAYLGDGATSQGDVHESMVFAASFQAPVIFFCQNNHWAISEPVRLQSHVPLAGRAAGYGIPGLRVDGNDVLAVLAATRWAAARARSGAGPSFIEAVTYRMGPHTTADDPTRYRGVTELEEWAAKDPIARVRAFLLGRGALDDAGEAAVAARADAVAAELREGTINMPDPDPMTVFDNVYTSEHSILDRQREHYARYLAGFAGASDTATLEGNRS
>NZ_CP012479.1|WP_054012920.1|719079_719550_-|Lrp/AsnC-family-transcriptional-regulator
MPTFDATDARILLAMVEDPRQTVVAMAAELGLSRNTVQARMASLEKRAAFLNFDHRVSPAALGYPLTAFISVHVQQQKLGALASSLAAIPEVVEAHGLSGRADLLVRVVSTGAEDLFRINGTILACDGVERTETSLAMNELVPFRLTPLLERAVKK
>NZ_CP012479.1|WP_054012919.1|718553_718961_-|DUF4383-domain-containing-protein
MRTSPNKMLATIFGAVYLLVGLVGFFVTSGVGFFATEGRNLIVFEVNPLHNVIHLLIGAALLAAGLRSVPAAKATNSTVGSVYLLVGIVGLFLPGTSLNIIALNGADNVLHLGSALVLLAVGMSQDRTAAARVVA
>NZ_CP012479.1|WP_054010403.1|717792_718437_-|hypothetical-protein
MLSSLYVSLALVGIAALGSAAASSLIPGLAQGPHLHTPQRWNWEGWPWAGGIAVALFAVAALAYAVVSFRAGRVPRPRMVVRTFAVAVAVQLAALLEGVWRFPADTRTFDLTLASLIVLELSVIAVLGWQRTSAQRLRTQRGSSPAAPRREPSAAALIGVLFAASIFVAAVASAGMAASSAGELAVPHSGHGGGGGAPGLPGNLVQLENSGHHH
>NZ_CP012479.1|WP_054010402.1|716471_717701_-|histidine-kinase
MSAHEAGDTALILLLAAAVVVAVVFAVIGLRVARPHRELGTDAERATFRALHSATAAGTHLRSGLNAAGAVKASKQFRSLLNCAVFAMTDEVQLLAWDGAGAAAKSPDSAAVMSLAAQAMGNGRTQVATLDGSLRRALGLTEADAGLKTAVICPIKVDSRAVGSVIILSRQASAGLVRATNEVADWVSAQLELTELAASRTMLAEAEVRALRAQISPHFIYNSLNAIASFINTDPQRARDLVVEFADFTRYSFRRHGDFTTVAEELRCIDRYLLLESARFGDRLRINLQIAPEVLNTVIPFLSLQPLVENAVRHGLEAKEGVGRLQIGARDRGAFTELTIEDDGVGMDPEQLRLVLAGQRDGHHVGLRNVDSRLRQVYGENHGLLIDTAVGHGMLITMTVPKNQPGNDT
>NZ_CP012479.1|WP_054010401.1|715682_716408_-|response-regulator-transcription-factor
MINVLVVDDEVPAVEEMAYLLGRDPRIGSIHRATCGAQAIEILAAEDVSAVFLDIHMPGISGLELAGVINKRANPPLVVFVTADDDRALEAFDVAAVDYLLKPVRAERLATTVGRLTDLVTRPAGDGQVEMITVGQGGTSRVISLDEVRFVQAQGDYARLHTAESSYLVRVPLADLEQRWAASGFVRIHRSFLVCMPFVTALKLGAAKPTILVSNAELPVSRRHLPLLRERLQATRVRPSA
>NZ_CP012479.1|WP_054010409.1|728560_729724_+|acyl-CoA-dehydrogenase-family-protein
MPNFELSDEYQDLSDTVRDFADHVVAPASAKHDEDHSFPYEIVAQMGEMGLFGLPFPEEYGGMGGDYFALALALEQLGRVDQSVAITLEAGVSLGAMPVYRFGTEAQKQQWLPSLAAGEALAGFGLTEPDAGSDAGGTTTKARLEGGEWILDGHKQFITNSGTSITKFVTVTAVTGTSERANGSIKKEISTILVPNGTPGFTVEKPYNKVGWNASDTHPLTLIDVHVPEENLIGVRGRGYANFLSILDEGRIAIAALATGTAQGCVDESVRYAKERHAFGHAIGHYQGISFKIARMQTRAHTARLAYYDAAARMLAGKPFKTEAAIAKMVASEAAMDNARDATQIFGGYGFINEFPVARHYRDSKILEIGEGTTEVQLMLIARELGL
>NZ_CP012479.1|WP_054010410.1|729911_730718_+|CoA-transferase-subunit-A
MINKVVGSAAEAVHDIHRGASLAVGGFGLCGIPVALIQALHDAGTAELETISNNCGVDDWGLGILLRDGRIRRTVSSYVGENKEFARQFLAGELEVELTPQGTLAEKLRAGGAGIPAFYTAAGVGTQVSEGGLPRKYDGDGGVAIASPPKEVRTFNGADYVLEESLTPDFALVHAWKGDRHGNLVFHATAMNFNPLCAMAGKITIAEIEELVEPGELDPEHVHVPGIFVQRVVHVPAGSPGSEKRIEKRTVTVVEPVETPVPAQTKEA
>NZ_CP012479.1|WP_054010411.1|730720_731374_+|CoA-transferase-subunit-B
MALTRNELAARVAQELHNGQYVNLGIGMPTLIPNFIPAGVEVVLHSENGILGTGPYPLEADVDPDLINAGKETVTVNKGAAFFDSALSFGMVRGGHVDVAVLGAMQVAENGDLANWMIPGKMVKGMGGAMDLVFGAKKLIVMMEHTDRDGNPKILKDCTLPLTGKGCVDLIVTDLAVIEVSPDGLVLKELAPGVSVEEIVAATGAPLNLEMHDVDNV
>NZ_CP012479.1|WP_082368992.1|731370_731925_+|MaoC-family-dehydratase
MSEKEQGSRPPVVEPAETESVETPPFETRVVTQRGLYFGELEAGVVYQHRPGRTLTEADNVLFTTLTMNTQALHLDAAWSAEQPFGQRLVNSMLTLSTMVGQSVTQLTQGTIVAQLGMTDISFPHPMYHGDTLYTETVVTGKRLSSSRPGQGIVTMVHTGRNQDGVIVGTASRTVLMWLDPAND
>NZ_CP012479.1|WP_054010413.1|731980_732823_+|CoA-ester-lyase
MTGAETGRPVDRRFAMGPALLFAPADRPERYGKAAERSDAVILDLEDAVAPDAKAAAREHLANNPLDPASTIVRINALSTEDSRLDLAALARTSYRTIMVAKAEDPAAVAALADFNVVALCESAAGILAAPSLARLDNVVALMWGAEDLVASLGGTSSRHDDGSYRAVAMHARSSVLLAAGACGKTAIDSIYADIPDLEGLAAETADAVASGFAVKACIHPNQVAVVRRAYRPSETEIADATELLAAADDAGTGVFAFKGQMVDGPILQHARETLRRAAP
>NZ_CP012479.1|WP_054010414.1|733002_733578_-|NAD(P)H-dependent-oxidoreductase
MTKIAIVTGSTRPGRNNHGVAEWVLAQAQLRGDADYELVDIADFNLPVLDEAYPAGYQNYQNDHTKVWAAKMAEFDGYVFITGEYNHSVQPALANAISYLNVEFNNKAAGMVGYGSAFGARAVEHLRGILSELQVAHVQKTGMFSLFTDFENFSTFKPTELQAASVTPMLDQLVSWTRALKSVREEALAAV
>NZ_CP012479.1|WP_054012922.1|733706_734174_+|winged-helix-turn-helix-transcriptional-regulator
MNDPRWLDADEQTIWLELRDFVSGLPRAVDRQLNQDAGMSGGEYGVLAAVSEAPPEGVRSGDLARMLDWEKSRVSHLLRRMEAKGLLERCAASCDGRGQEISLTPAGWDVVRATAPGHVTMVRETVFDPLTPEEQLQMRDTLRKIRAAAIDRGLW
>NZ_CP012479.1|WP_054010415.1|734290_735505_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MQHRKVIILGSTGSVGTQAIDVVERATLADGSPRFTVTALSAGGGNLELLAEQAVGTRALAVGIAAGDAGSLRALIASRAAAAGMGNYEPEIVSGPDASTKIAAWGAGTDDAADVVLNAITGSIGLAPTLAALGTEAILALANKESLIVGGALVKEAASPGQLVPVDSEHSALAQALRSGAADEVNKLIVTASGGPFRGRSRAELADVTPAQALKHPTWDMGPMVTTNSATLVNKGLEVIEAHLLFDVPLERIEAVVHPQSVVHSMVEFTDGSTLAQCSPPDMRLPIALGLGWPERVPGAAVPCDWTKAATWTFEPLDNVAFPAVELAKEAARRGSTCPAVYNAANEEAVHAFHAGRIAFLDIVDTIAEVLSEHTPVSELTLESVLDAEKWARARTNQLLATKG
>NZ_CP012479.1|WP_054010416.1|735557_736886_+|site-2-protease-family-protein
MTVLLFIGGVLFVAIGVALSIALHEVGHLLPAKLFNVRVTRYMIGFGPTVWSRKKGETEYGIKAIPAGGYVAMVGMYPPNPADGSVRPSSTGMFQTLATEARSAAHEEVGPDDANRVFYKLPVWKKIIIMLGGPTMNLLIGTVLMAVLLMGFGTPQATTTVSEVNACQVAYGAPAPKDLNNCTKTPAAAAGLQPGDTIKSFDGKAVPDWTTLTEWIRESAGKTVTLTYQRGANTVTTSITPVLTARPVVDANGNPKVDAAGTVLTSKVGFIGMGPTSAMTPSSPGAVLPAVGNNIVQIGGVVFQLPQKLVGVAQAAFSSAPRDPNGPISVVGVGRVAGEVASMEQVPLSSRVATLIGLLAGVNLALFVFNLIPLLPLDGGHVLGALYEGVRRFFAKVFKRKDPGPFDIAKMLPVTYVAATLLLVMGALLIYADIVKPVNIFG
>NZ_CP012479.1|WP_054010417.1|737139_738105_+|hypothetical-protein
MDLQKIGVRVAQLWPSGVVIATTAQLDDAGCGDRLLKAAVDMRVLVRIRRGAYVRTEVWDALKPWEQSSFLLMAHILTASGNPVYSHFSAARLHGLDVWNCGDEVHVTSAATPSGMGVAADVVHHHLPLPQGSCGRITSAAGPRVRVTSLERTVVDCARYGGFAQAVAIGDHALRRGANLEVMTDMVSRLTGQRGVKRARRVLAALNDASESVGESRTRLVLVVMDIPEPVLQLRIVANGTEYRADFAWPELKLILEFDGQGKYFDFRPTAEALLAERRRETLLMEQGWRFIRVVWDDLARPEALRQRIYRAISDARRAAA

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Crispr_ID: NZ_CP012479_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012479_4

2372467-2372784

Orphan

Consensus_repeat	Method
GGTGTTCACGTTCGTGTT	CRT

7 spacers

The CRISPR arrays of NZ_CP012479_4

>merge|NZ_CP012479|4|2372467-2372784|CRT
GGTGTTCACGTTGGTGTTGGTTGCCGAATTCACCGAGGTGTTGGCGGCAGTGTTCACGTGCGTGTTGACCGAGGTGTTCGCCTCGGTGTTCACGTTCGTGTTGGCAGCCGTGTTCACCGAAGTGTTCGCGGCAGTGTTCACATTCGCGTTCACCGAGGTGTTCGCTGCGGTGTTCACGTTCGTGTTGGCAGCCGTGTTCACCGAAGTGTTCGCCGCGGTGTTCACATTCGCGTTCACCGAGGTGTTTGCTGCGGTGTTCACGGAAGTGTTCGCTGCGGTGTTCACCGAAGTGTTGGCAGCGGTGTTCACGTTCGTGTT

>NZ_CP012479|4|1|2372467-2372784|CRT
GGTGTTCACGTTGGTGTT	GGTTGCCGAATTCACCGAGGTGTTGGCGGC
AGTGTTCACGTGCGTGTT	GACCGAGGTGTTCGCCTC
GGTGTTCACGTTCGTGTT	GGCAGCCGTGTTCACCGAAGTGTTCGCGGC
AGTGTTCACATTCGCGTT	CACCGAGGTGTTCGCTGC
GGTGTTCACGTTCGTGTT	GGCAGCCGTGTTCACCGAAGTGTTCGCCGC
GGTGTTCACATTCGCGTT	CACCGAGGTGTTTGCTGC
GGTGTTCACGGAAGTGTT	CGCTGCGGTGTTCACCGAAGTGTTGGCAGC
GGTGTTCACGTTCGTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012479.1\|WP_054011647.1\|2367474_2367813_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP012479.1\|WP_150117132.1\|2371452_2372205_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054011643.1\|2359774_2360719_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP012479.1\|WP_054011653.1\|2379498_2380017_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP012479.1\|WP_054011657.1\|2383288_2384068_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP012479.1\|WP_054011656.1\|2382137_2383109_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270225
NZ_CP012479.1\|WP_054011654.1\|2380013_2380529_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NZ_CP012479.1\|WP_082369331.1\|2370295_2371456_-\|HTTM-domain-containing-protein	unknown	unknown	gnl\|CDD\|214802
NZ_CP012479.1\|WP_082369330.1\|2367809_2369171_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP012479.1\|WP_054013085.1\|2364919_2366320_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237233
NZ_CP012479.1\|WP_054011644.1\|2360820_2362500_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173878
NZ_CP012479.1\|WP_150117130.1\|2366454_2367294_-\|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380141
NZ_CP012479.1\|WP_054011645.1\|2362891_2364466_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP012479.1\|WP_054011652.1\|2376936_2378133_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP012479.1\|WP_054011655.1\|2380674_2381844_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP012479.1\|WP_150117131.1\|2369355_2370021_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP012479.1\|WP_054011659.1\|2385678_2386827_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP012479.1\|WP_054011660.1\|2386823_2387663_-\|DUF1684-domain-containing-protein	unknown	unknown	gnl\|CDD\|377941
NZ_CP012479.1\|WP_054011658.1\|2384220_2385666_-\|NtaA/DmoA-family-FMN-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|274819
NZ_CP012479.1\|WP_054013086.1\|2378231_2379491_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883

Protein	Function_ID	Function_description	E-value
NZ_CP012479.1\|WP_054011647.1\|2367474_2367813_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	2.069e-46
NZ_CP012479.1\|WP_054011653.1\|2379498_2380017_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	5.04688e-14
NZ_CP012479.1\|WP_054011643.1\|2359774_2360719_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.87079e-112
NZ_CP012479.1\|WP_054011657.1\|2383288_2384068_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	9.55758e-08
NZ_CP012479.1\|WP_054011656.1\|2382137_2383109_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270225	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold. This subgroup includes the periplasmic binding component of ABC transporter involved in uptake of mimosine MidA and its similar proteins. This periplasmic binding domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.93853e-67
NZ_CP012479.1\|WP_054011654.1\|2380013_2380529_-\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	1.47734e-54
NZ_CP012479.1\|WP_082369331.1\|2370295_2371456_-\|HTTM-domain-containing-protein	gnl\|CDD\|214802	smart00752, HTTM, Horizontally Transferred TransMembrane Domain. Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.	8.87617e-51
NZ_CP012479.1\|WP_082369330.1\|2367809_2369171_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	4.11433e-156
NZ_CP012479.1\|WP_054013085.1\|2364919_2366320_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|237233	PRK12853, PRK12853, glucose-6-phosphate dehydrogenase.	0
NZ_CP012479.1\|WP_054011644.1\|2360820_2362500_-\|hypothetical-protein	gnl\|CDD\|173878	cd08513, PBP2_thermophilic_Hb8_like, The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold. This family includes the substrate-binding domain of an ABC-type oligopeptide-binding protein Hb8 from Thermus thermophilius and its closest homologs from other bacteria. The structural topology of this substrate-binding domain is similar to those of DppA from Escherichia coli and OppA from Salmonella typhimurium, and thus belongs to the type 2 periplasmic binding fold protein (PBP2) superfamily. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. The type 2 periplasmic binding proteins are soluble ligand-binding components of ABC or tripartite ATP-independent transporters and chemotaxis systems. Members of the PBP2 superfamily function in uptake of a variety of metabolites in bacteria such as amino acids, carbohydrate, ions, and polyamines. Ligands are then transported across the cytoplasmic membrane energized by ATP hydrolysis or electrochemical ion gradient. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.21538e-77
NZ_CP012479.1\|WP_150117130.1\|2366454_2367294_-\|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	6.90953e-10
NZ_CP012479.1\|WP_054011645.1\|2362891_2364466_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP012479.1\|WP_054011652.1\|2376936_2378133_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	1.67007e-162
NZ_CP012479.1\|WP_054011655.1\|2380674_2381844_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	1.9274e-46
NZ_CP012479.1\|WP_150117131.1\|2369355_2370021_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.95863e-23
NZ_CP012479.1\|WP_054011659.1\|2385678_2386827_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	1.21401e-40
NZ_CP012479.1\|WP_054011660.1\|2386823_2387663_-\|DUF1684-domain-containing-protein	gnl\|CDD\|377941	pfam07920, DUF1684, Protein of unknown function (DUF1684). The sequences featured in this family are found in hypothetical archaeal and bacterial proteins of unknown function. The region in question is approximately 200 amino acids long.	1.45548e-55
NZ_CP012479.1\|WP_054011658.1\|2384220_2385666_-\|NtaA/DmoA-family-FMN-dependent-monooxygenase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	1.01317e-131
NZ_CP012479.1\|WP_054013086.1\|2378231_2379491_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.53528e-65

>NZ_CP012479.1|WP_150117132.1|2371452_2372205_-|hypothetical-protein
MKIRRIGRLSTVVLIIGGLLAGAHMAATLAFTGPQTPLKDSLQPELNKYFLGPLDQGWSLFAPGVYSQDEYFLMRGCLSSETVCAKGASGGAVFSDWQNVTEQEMESARFNIFSNRGTKQSKVVNARFWMAADKLSSEQSKMAQGNHIAGQPVFGVDLNSPAAAEKYGAADLNTLMNYQRLEDVAVGFASLKALELWGGKASLVEVRMRRDPVVPFEQRNDAVDKPESSFIYIGWRDVMKFDDSAMAAWK
>NZ_CP012479.1|WP_082369331.1|2370295_2371456_-|HTTM-domain-containing-protein
MTLKNSTTPPVASPEATGSESEPAESPATIRGWIKKNRYAPVKLINMITEWFTGNRHADYGLAVMRIASGFLVLGWLVLNIPVAARVWGPGSAYWDGYREILGYQWPLNLLRHAGTGPFWLWYVAAIVLALAFLLGWRTRIVTPLLFVFYAGINAQNVAIADGGNYFFRIMLIYLIFADVSRRWSLDSRRRARKNSKETEVGTVLHNLALCLVVAQLCTVYLEAGLYKVQGSLWQNGTAMYYPLKSDFYGVFPALSDLATHFSWTVVLVTYFSVLIQIAFTFMLFNRITRRIALLGILCMHLGIAILMGLPFFSGIMASADAVLVSGATWVLIAGWLGRGRRSLLGRLRGGRFAKSSTPATPGVAETAPEDDAKDDSVTVPDSVRV
>NZ_CP012479.1|WP_150117131.1|2369355_2370021_-|response-regulator-transcription-factor
MNLGLLQNVSAIRMAVVGFNYITSLGLAQLLVEAPHLDVAGSSTEVGGALELMESGPLDIVLVDSGMDRAELINTCTTLAAVPNPPRVVVMGDVDFKLAELLFLEGASAILHLGRIAEDLPTLLRVIHGGGASMLNAEALDALKDRDYHCNVLHKERFEGLNARERSVAEGIAEGLTNLQLAAAMHVSEATVKLLVSTVMNKLGVENRVRIAVSVTKAKFL
>NZ_CP012479.1|WP_082369330.1|2367809_2369171_-|ammonium-transporter
MNTGDTAWVLVSAALVLLMTPGLAFFYGGMTRAKGVLNMMMMSFGALALVGVLWVLFGYSIAFGKDVAGGFFGNPLEYFGLEGLLDTGKGMPLVGTVPAMAFVAFQAVFAIITVALISGSIADRAKFGAWMVFAGIWVTVVYFPVAHWVFDFNKDSNGNATGGWLGQGLGVIDFAGGTAVHINAGAAALALALVLGKRKGFGKDPSHRPHNLPLVMLGAGLLWFGWFGFNAGSALGANGAASFVWINTLAAPCAAILGWLVVEKLRDGHATSLGAASGAVAGLVAITPACSALTPVWSMVLGLLAGVVCALAVGLKYRFGFDDSLDVVGVHLVGGIFGTLFIGLAADPSAPAAGQGLFYGGGMELFGKQAIGAFVVLFYSFILAFIIGWIINKTMGFRISSEQESVGIDVSVHAESAYDFGGRVSGSFHPTSTPLPVPHHMDEVISADEKVDA
>NZ_CP012479.1|WP_054011647.1|2367474_2367813_-|P-II-family-nitrogen-regulator
MKIITAIIRPEQLDDVRSGLESYGVQGLTVSGAHGYGRQRGHTEIYRGAEYTVDLHPKVRIEVLASDEQAYDLVDIIVASSNTGSAGDGKVWMVEVFEAVRVRTGERGVAAI
>NZ_CP012479.1|WP_150117130.1|2366454_2367294_-|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein
MDGSQGRKTRQVVAAIAAGGKVGRQKDLLACGHSEWSLRQAVKAGMIMRIAPGYYALPDADPLDLHLARHQARKTCFSKAAELGLWILNPVPQPHVAAAHGRPVPGCKVHRVKGGQTLMDILRQCVGCGSELEALAVLESAVVLKQCTVHELRTAFSRRGDGAARAVIAMIDPQSQSIVETAARYLLKKVGYNVQGQASVWGVGHLDLLVEGILGVELDGEKYHNTPEGWAEDLRRDNLLVINGVWKLRIPAAVVLYNPDLMLLWVERALDRIETASPR
>NZ_CP012479.1|WP_054013085.1|2364919_2366320_+|glucose-6-phosphate-dehydrogenase
MKTLVILGASGDLTGRLLLPGVAGLIASGRAPGITLVGAGSDDWSAAQWQERLTGSFAGALADDGQSTKDGIKELAKVQKDSSYHQVDVTAKGALGELLATVEGPVALYFALPPAISQKACEVLRKKELPAGTRLVMEKPFGSSEESARALNVTLAKLVAEDHIHRVDHFLGKSTVLNIMGLRFANRLLEPLWNGEHIAKVEIIFDEDLTLENRARYYDHAGAGKDMIQSHLLQIMAIMAMEPPATLGHQDVRSSIAAVLRASTIGNSFKPDLTDSTRRARYTKGTIGSRKVPDYLSEEGVDPANDTETLAEVEVYVNNWRWAGVPFVLRSGKALGRTRKEAVVTYKPVPHLPAGFTGTDSPTRLHIGFGPDTLTLDLDVNGPGDLFTLDRVNLHTELASDPLLPYGEVLEGVLNGDPLLSVRGDTAEDCWRIVEPAFAAWKAGTVPMEEYAAGSTGPDGWTTSHD
>NZ_CP012479.1|WP_054011645.1|2362891_2364466_-|signal-recognition-particle-protein
MFNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVPVVREFTAKVRERALGAEVNEALNPAQQIVKIVNDELVTILGGETRRINLAKNPPTVIMLAGLQGAGKTTLAGKLSKWLKGQGHSPLLVAADLQRPNAVKQLQVNGERAGVPVFAPHPGVSSEFEAATGDPVSVARAGVAEARAKLHDVVIVDTAGRLGIDAELMQQAADIRAAINPDEVLFVIDAMIGQDAVNTAQAFNEGVNFTGVVLSKLDGDARGGAALSVASVTGKPVMFASTGENLDDFELFHPDRMASRILDMGDVLTLIEQAEKNWDKGEAERMARKFADQEDFTLDDFLSQMQQIRKMGSMKKMLMMMPGAANIRQQLENFDEREIDRVEAIVRSMTPHERVAPKIINGSRRARIARGSGVHVSEVNGLLERFGQAQKMMKKMAQGGGIPGMPGMPGTGGFGGARKGKQNAKKKPRSGNPAKAAAELKAAQEKANAPKALPTGAAFGAGESDFDPASLNLPKGFEKFLGK
>NZ_CP012479.1|WP_054011644.1|2360820_2362500_-|hypothetical-protein
MPNWIFPFAPIADFSVSNSSYLQFLMYRPLYWFGNNGATGVDDSLSLAAEPVYSNGGKTVTITLKPYKWSDGSTLTSTDVMFWFNMLKAEKANYAAYTPGQFPDNITSASAPNATTVVFNTDKAYSQQWFLANQLSTITPMPVAWDVTAAGTKSDCATNEADCKAVYNYLITQAKDLPTYATNPLWQVVDGPWKLSSFSSDGNVTFVPNTTYSGPVKPTLKKFIEVPFTTDDAQFNVLRTGSTIDVGYLPTQDLTSPKPASSGPAEAGPNPLSSNYTLAPWFLYGINYFPINFNNPTVGPIFKQLYFRQALQSIVDQAGVLSSAAKNYGVQTTGPVPLFPDSPLISSVEKTNPYPFSISAAGKYLSDNGWTVKAGGVTTCTKPGTGAGECGAGITSGEPLTFTLQYVSGQQTITTAMQSMKSNAAQVGITLNIVPAPFNTVTGTAVPCSGATCTWQMGNWGGGWVYSPDYYPTGELLFSTGAGSNSGSYSNPAIDKLIQSTTTESGTAVMQAYENALAKDLPVVWQPNYTYSLTEVANGLQGVTPLNPYSALNPENWHY
>NZ_CP012479.1|WP_054011643.1|2359774_2360719_-|ABC-transporter-permease
MIGYILRRLAQSIVVVLVVTIIVFILLHQLPGGAARAILGPRATAVQIAEFNQQNGYNRPLFIQYFTTLGQWLSGNFGFSVKLNQSVSSLLVQRLPKTIILSLLSLLLTVIVAVPLGIYQAVHRNKSFDYIATGLSFIFYAAPTFFIGLIMIEIFSQNLGWFPPEAPQSNGVGPIFQDFSGMVLPVVTLALLSIAGFSRYMRSSVLDNIDQDYVRTAKAKGATSTRVLYHHVLRNAMIPIITLLGLSLPALFAGALVTESIFNFPGMGLLFWQAAQASDYPVELGVVIITAFATVAGNLLADVSLAVIDPRVKL
>NZ_CP012479.1|WP_054011652.1|2376936_2378133_-|signal-recognition-particle-docking-protein-FtsY
MNESLAIILYIVIGLAVIGGLVPVFLKARRNSQNYTGPRDANDPAPQDLDGPATSSAGTLLEERPEAPAPASDLEAVVEPEIPAAPALEKPLPVEGRLVRLRARLSKSNNALGKGLLALLSQDSIDESVWEEVEETLLLADIGTDSTMELVDTLRERVKVLGTRSPEHVQAMLREELIKLVDPSMDRSLNIARHDNRPAVLMVVGVNGVGKTTTVGKLARVLVAEDKDVLLGAADTFRAAAAEQLATWGARVGVPTVKSDVDGADPASVAFEAVKAGIEQEVDVVMVDTAGRLQNKVGLMDELGKVKRVIEKQATVDEVLLVLDATTGQNGLTQAKVFSDVVNITGIVLTKLDGTAKGGIVVAIQKTLGVPVKLVGLGEGADDLAPFDAESFVDALLS
>NZ_CP012479.1|WP_054013086.1|2378231_2379491_+|MFS-transporter
MSSNSLAPNPRALTPGEKLPREIKVLVAAAFLIAIGFGIVAPVLPQFAQSFHVSVGAAAVVVSAFAFTRLIFAPLSGVLVERLGERRTYILGILIVGASSAACAFAHSYWQLLLFRGLGGIGSTMFTVAAMGLLIRLAPPKARGRVSSLYAGSFLLGNIAGPAVGGLLAGFGLQLPFLVYAGALVLVAILVATQLPAAKAVPAQSGASVPARKEVLPLRTALGIPAYRALLTSNFANGWSAFGIRMALVPLFASAALGAGPEVAGISLAVFAIGTAVALTFSGKLADTWGRKPMILSGLAVNGAAMAVLGLTGNEFWFFVVSAIAGLGSGLMGPAQQATVADVIGNNRSGGKVLATFQMSSDLGAIIGPIAAGLLVDTFSYAPAFAMAAAVSLLSLLLWLPARDPQKDVVAPLSAGGKP
>NZ_CP012479.1|WP_054011653.1|2379498_2380017_-|NAD(P)H-dependent-oxidoreductase
MIVLGIDGSPYGPGKTAAAVATVLAGAADAGAQTELIRHDDPEAVARIAAADAVVFGSPTYRASHTAVLRTLLEKIDRKAGDEPLAGTPTAIVMTGASPAHFLGTRELAATLSGFFGTQVLAPELFLHGGDFDGGAPAGRAAELCTLHGQALVELAAAVGGSVALRALKPVV
>NZ_CP012479.1|WP_054011654.1|2380013_2380529_-|flavin-reductase-family-protein
MTSHPPVTPQQLRNVLGHFATGLTIITAATPQGPAGFTCQSFASLSLEPALVTFSPARTSSTWPLLRAAGSFTINILPAEHEHLSGQFARSGADKFAGVGHSPSPLGNPVLDQALAWVDCELHEEFDGGDHTIVVAAVRALAARAEAEPLLFYKGSYARVSNSPALLGALA
>NZ_CP012479.1|WP_054011655.1|2380674_2381844_-|LLM-class-flavin-dependent-oxidoreductase
MTRMPAPGSGFAPTGRLHLGVSLPGPAAHTSFEQLRTAAQTAERGHFSLLTLDERYWLAGDPGADIAADPAGSNDVGTLLAGLAAVTTGIGLAAAVAPDHDDPADQAARIATLDQLSGGRAAWQLLPDGEDPADFLPAAERLWDAWSAAANARNTRPGPVKPLGSFEHGGHQFSVGLGTGNRPAAPYRPVVVLPGHTEAERLFAARHADVVETGPAGLGDALALRRELAADCRDAGRDAGNVLILQAATFVLAETDGEAVEKAEWIREQLPESAWDQVAFVGSYQGVADELLDFARTGAVDGFTVMPWMFPHELEDIVNHLVPQLQLRGIYPADHPDPAGTSLRARLGLPDTPHPAGNRSTQAVPVMQVEDLEDIHLDIRMELVVAKVP
>NZ_CP012479.1|WP_054011656.1|2382137_2383109_+|ABC-transporter-substrate-binding-protein
MTRLTAKSALTVALAATTLLGLAACSDPSASAAPEPSTTSGGKVFNLSPNQDRVPVTVDPAAAALVPADIKKDGKLTVAVSPFAAPLAVYATDNKTPVGNEVDIAVALAQSLGLQPDIVPTAWADWPLGVGSGKYEAVISNVTVTEERKLKFDFASYREDKLGFYAKADSPITKVESAPDVAGKKIIVGSGTNQEAILLAWDKENRKNGLAPVDFQYYDDDSASTLALQSGRADLTFGPNATAAYKAATDEKTKLVGLVDGGWPLKANIAVTTKKGNGLAAAAQAGLNHLIEDGSYAKILARWGLSEEAVKESELNPPGLPKS
>NZ_CP012479.1|WP_054011657.1|2383288_2384068_+|CPBP-family-intramembrane-metalloprotease
MASETTTQRQQRFGRLMERADGREFPYYNGSPVDMAGWKWGVLVLACVAGIAALMFYPAANDLQALVPRFLFAAIPLAALVAFTGHHWKALFKKLAPADYLNMVFFWLLNLAVSGIVGLVVMAIFGANANPATNGLLDGGPAQIISFYVGTGVQLLGEELFTILPFLAVMYLLFTKAKLSRNTSVILAWLITAAWFGAAHLPTYGWNFAQAFLVIGAARLVLTLAYIRTKNILVSLGAHVLNDWTIFTIALVGSAAAAH
>NZ_CP012479.1|WP_054011658.1|2384220_2385666_-|NtaA/DmoA-family-FMN-dependent-monooxygenase
MSENQEIGHGFKPSGQLQFGIFFQGVNSGTIWKAPESGSQTEFDSFRRLAQTAERGLFAAFFLGEGLRLREHLGRPHALDVAGRPDAQTMLAALAGVTNKIGLVATQNTTYNDPAHLAHRLSSLDLISGGRAAWNVVTTDNAWTGANFRRGGYLDHADRYTHAEAFVETAKRIWDAWDGHAISGSETAPAWQAPGSVRRVRHDGRHYSVDYTPRLPRSAQYRPVLFQAGDSPEGRDFAARQADVIFSAHPAYDGAVAFRRDIVARTVRAGRGANDVKIMPASEFILAATPSEALEKKEWVRSLQIGPEQALAYLEQFWGRELSGYDPDGPLPEIDPVVVETSETRGSGFHGAKARQLADQWRAEAKDKGQSIRQFVSGKTSRVDATFTGSYTDVADTLARYAQTGAVDGFNISPWLVPSGLDEIVNHLVPELQERGVYPTEYAGHTLREHLGLPVPVRSREADDDAAGGLKLELAVGQQQL
>NZ_CP012479.1|WP_054011659.1|2385678_2386827_-|LLM-class-flavin-dependent-oxidoreductase
MSAGDQARAGFLALELDGDGAHPAAWRAARHAPADLLTGERVRSTVLAAESAGFHVATFSDGPLSPGGGADIGGRLDAVQRAAFAGPLTRSIVLVPEVDTVYTEPFHVATQLASLDYVSGGRAGWLVAAGGTEREGAAVGRDIVDGAALALEAAASVEVSRRLWDSWEDDAVIRDVETGRYLDVDKLHYADFETGEDFPGAGYSVKGPAIIPRPLQGQLPVLAPAGLVATGLAADNSAAGIDAVLISAPSLGQLAAAVDNLRERSEGAVAVIAEIDVVLDARGQSAAERVAQLDAHTPWHSTRARYTGDAAGLVELLADVLAKADGVRLHPAVLDVDLDELSRLVLPELRRRGALAPVVPDATFRELLGLGRPANRYASVGN
>NZ_CP012479.1|WP_054011660.1|2386823_2387663_-|DUF1684-domain-containing-protein
MSLHTSTETRADTFATDWQHWHANHEHLRSDPHGFLAVTELHWLGTEATALAGAPGTWRVEDDVVRVALGEGDSLRRDGVELNTGTGELAFGPIAERDGFNLGYGETVLELAKRGGEYILRPRDPANALLRNYQGTPAYAPDEGFAVPARYEPFRQPRETTVGAAVEGIHHVYQAPGQLRFRLGGQEQSLTVFNGHAPGTFTVLFTDATSGVTTYAANRSLTFSAPETGGPVVLDFNRAVNLPCAYTDLATCPLPPAENHLTVAVEAGEKTPLEREGSL

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Crispr_ID: NZ_CP012479_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012479_5

3579612-3579700

Orphan

Consensus_repeat	Method
TCATTTAGCGATTAATCATCCGTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012479_5

>merge|NZ_CP012479|5|3579612-3579700|CRISPRCasFinder
TCATTTAGCGATTAATCATCCGTCAAATGACGTGAATCATCCGTCAAATGAGCTGAATCATCCGTCATTTAGCGATGAATCATCCGTCA

>NZ_CP012479|5|4|3579612-3579700|CRISPRCasFinder
TCATTTAGCGATTAATCATCCGTCA	AATGACGTGAATCATCCGTCAAATGAGCTGAATCATCCG
TCATTTAGCGATGAATCATCCGTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012479.1\|WP_054012543.1\|3583803_3584133_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_160318939.1\|3580867_3581011_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	unknown
NZ_CP012479.1\|WP_160318937.1\|3574529_3575126_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP012479.1\|WP_054012534.1\|3576390_3577839_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP012479.1\|WP_054013218.1\|3569516_3570410_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|234663
NZ_CP012479.1\|WP_082369450.1\|3576255_3576477_-\|DUF4244-domain-containing-protein	unknown	unknown	gnl\|CDD\|379429
NZ_CP012479.1\|WP_107503958.1\|3573636_3574083_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054012545.1\|3584672_3585290_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054012544.1\|3584239_3584704_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_160318938.1\|3580435_3580855_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054012532.1\|3575358_3575745_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274799
NZ_CP012479.1\|WP_054012541.1\|3581982_3582651_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|365969
NZ_CP012479.1\|WP_054012530.1\|3570507_3571218_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP012479.1\|WP_054012540.1\|3581538_3581856_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054012537.1\|3579950_3580154_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_150117190.1\|3577886_3578342_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054012533.1\|3575707_3576208_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921
NZ_CP012479.1\|WP_054012536.1\|3578860_3579169_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054012539.1\|3581003_3581465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054012542.1\|3582780_3583488_-\|DUF3800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378919

Protein	Function_ID	Function_description	E-value
NZ_CP012479.1\|WP_054012532.1\|3575358_3575745_-\|hypothetical-protein	gnl\|CDD\|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	7.64189e-06
NZ_CP012479.1\|WP_054012541.1\|3581982_3582651_+\|recombinase-family-protein	gnl\|CDD\|365969	pfam00239, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family (this family) contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase - see pfam02796.	2.75016e-37
NZ_CP012479.1\|WP_054012530.1\|3570507_3571218_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.47068e-06
NZ_CP012479.1\|WP_160318937.1\|3574529_3575126_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00118093
NZ_CP012479.1\|WP_054012534.1\|3576390_3577839_+\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	3.415e-38
NZ_CP012479.1\|WP_054012533.1\|3575707_3576208_-\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	0.000133779
NZ_CP012479.1\|WP_082369450.1\|3576255_3576477_-\|DUF4244-domain-containing-protein	gnl\|CDD\|379429	pfam14029, DUF4244, Protein of unknown function (DUF4244). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 66 and 95 amino acids in length. There is a conserved EYA sequence motif.	1.63839e-09
NZ_CP012479.1\|WP_054013218.1\|3569516_3570410_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|234663	PRK00142, PRK00142, rhodanese-related sulfurtransferase.	3.54044e-152
NZ_CP012479.1\|WP_054012542.1\|3582780_3583488_-\|DUF3800-domain-containing-protein	gnl\|CDD\|378919	pfam12686, DUF3800, Protein of unknown function (DUF3800). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 215 and 302 amino acids in length. There is a DE motif at the N-terminus and a QXXD motif at the C-terminus that may be functionally important.	0.000417234

>NZ_CP012479.1|WP_054012536.1|3578860_3579169_+|hypothetical-protein
MDGVQAAHAFCPEDWRVDAEAVVLELAQSGRVFTVDDVRRAGIPDPDIPQRWGALIAVMSNAGLITVVGAQEHRIKTGTKQLVRQWCGTASAGCTELSGGAS
>NZ_CP012479.1|WP_150117190.1|3577886_3578342_+|hypothetical-protein
MTDQQTADLRRNGWEIDPEDTYEAAQLRYMDSTGQVPMSADGDMVAYVDPMEYRFRADVVLTARCGACGEIASKLFLSKSTPAANHAAIARYAFWASPKVAVKCKHHGVLPHPRDLVRAISSGLQKGDGRKFGRDDGSQPKAILKVQPLSV
>NZ_CP012479.1|WP_054012534.1|3576390_3577839_+|recombinase-family-protein
MASRTARRAAIYTRISRDIEGTGWGVERQREDCEKLAASMGLTVVETYSDNDVSAYSGKTRPAYERLLAAIQRGEVQTVLTWNTDRLHRRTSELERYIDICQPLDVETHSVKAGHINLDSANGRAVAKILGTIAQQESELKSERIKRQKRQAAQSGRYLGGRVPWGWRVDEGVIVEDTAAADFIRAGVQAILDGHSLIEVTRRWSDAGARSLAGNRMNTTQVRRVLTRSRNAGIVTHHGEPVSSDWPALLSVEDFRAMEAKLNDRTIPRQSASKFKYLLSGIVACHCGEYMTGFGAAATAEHPEYRRMYRCRVHQQGGRYVPGHSTREMNRLDGYVTDVIAAYLQRPDLKAAVLSAAADIADSAVSSAPAKALDTGALLTRKQDLARLFAAGVIEESQLIEGTAQIRSELADIERQAVQDGGSSELIGVLMAADPGEAFRGAETGVQRGVIRALADVQILQGKSTPGVFNPELIAITWKGAN
>NZ_CP012479.1|WP_082369450.1|3576255_3576477_-|DUF4244-domain-containing-protein
MTLHAPAGALDVAADAGIDRCSACGSTSHADILSAYAIATLAAVGFAGLLVVILKSDEVRGFLLNIIRTALSM
>NZ_CP012479.1|WP_054012533.1|3575707_3576208_-|pilus-assembly-protein
MRSQLSSKMRGSVTAEFAVVLPAITVLLALLLLGGSAAILQIRLEEGARAGARSLARGESSAQAVDASSRLAGEGVSVSVELTDGYATVTISGHTAGPFAAVLAWQQTARATARVENYEPGADVGMPRGKPEQLAAAKQFAMAGIGVVASEEPRYGCWIGWQRGLA
>NZ_CP012479.1|WP_054012532.1|3575358_3575745_-|hypothetical-protein
MDAGLAGNVDSREGGAGTVVAAGLAIALLILLMGILSLAEAAVAAGKAATAADLAALAAADAARGLATGDPCQVASDLASRHGAVIASCAVLGSASDTVQVEVVVHTRLPWPARGIARAGPPPAGATP
>NZ_CP012479.1|WP_160318937.1|3574529_3575126_-|hypothetical-protein
MASCSGGGPPIAVDTTPAASAAASSPAPPTTHAPTPTPKPVYKPATADGPAQNVPVPVLPAKAKEFSKAGLEAFATYWYSTLGYAYETGDATPMMAITDTECTTCTGVRDMVTTWYGEGGWIRGGQMIVYSSTSTFYKTPDDTYQAVLMIQQKQVTSYKADKTIDSDLPKTDARADILVATYEQGHWTTHKAEHLTKD
>NZ_CP012479.1|WP_107503958.1|3573636_3574083_-|hypothetical-protein
MQPATIGSQPGPHTLRGQDTNFYADAHQQDFDVILLGQKVHITATPVAYTWNYGDGTVIGPTVSSGAPLPEDRIGEQTKTSHAYGATGKYAITVTTHFNGSYSVNGGPTLPIADQGHFTSAPLGLTVWRAITLNYADDCNTNPNGVGC
>NZ_CP012479.1|WP_054012530.1|3570507_3571218_+|GNAT-family-N-acetyltransferase
MTSGSTELEELLDAWFAGWTALRSYKTAFDTGYPAALRLDRSGDWEYFICDPQPAPFALLAAEVARSTNRAMCVLGPDIHRYVKQAHEAGLGMLSVSEQVMTVDMDMQDNQDPFLVEPELELQVTRIGGRRVASACDARFSGAIVNGTTVLASGKVAIYGEYAIFDQVETHPEHRRHGYGRLIMQSLTAHAKEYPVTTGLLLASTDGQRLYYKMGWRSVAAVTVLVPRARLERGLA
>NZ_CP012479.1|WP_054013218.1|3569516_3570410_-|rhodanese-related-sulfurtransferase
MALNKIVLFYGFTPVRDPDAVRLWQRALCEKLGLKGRILISKDGINATVGGDIKDLKQYLKTTREYAGFKDIDIKWSDGTGDDFPRLSVKARDEIVSFGAPGELKVDENGVVGGGTHLKPEELHELVAAKKTAGEEVVFFDGRNAFEAQIGKFKNAIVPDVATTHDFITELDSGKYDDLKDKPVVTYCTGGIRCEVLSSLMVNRGFKEVYQMDGGIVRYGETFKDKGLWEGSLYVFDKRMHMEFSDEAATIGRCIRCENPTNKFENCSNPSCRNLNLYCADCSADPATLQCPQGCTD
>NZ_CP012479.1|WP_054012537.1|3579950_3580154_+|hypothetical-protein
MNTMDKIRAALAGLSAVDTAAAVEQLRGMLAGLPEDGRSATDGLLRADLDLFLLGYDAGTRAATGRG
>NZ_CP012479.1|WP_160318938.1|3580435_3580855_+|hypothetical-protein
MEGNKVTLAPLNTKTGLPEMLTAAQAQKVGVMLHLFFARATDKELSEPTSTDDLVALIKMGIKAGDKAAAAAAAVAAPAPAVKMSGQVLFNAGSGSYDPVGARAKEIRDAETIRLHKEKYGDMTDAEIDLLHLADAAGI
>NZ_CP012479.1|WP_160318939.1|3580867_3581011_+|ribbon-helix-helix-protein,-CopG-family
MRQIDIRLPESLISTLDQLGAASGLSRAATIRTLLAGAVASPGTDDE
>NZ_CP012479.1|WP_054012539.1|3581003_3581465_+|hypothetical-protein
MSSRLPVDLSVLEKETRAVQLKTEGYSYDDIAVAVGYSNRSAAHKAVVRALNRRPAESVDQMREVEGLRLEGMNQTLAEIINSEAASFDEKIKAINAAVRVSESIAKLFGLYAPIKTETSNTGTIEVVFSAALAPQRHGMQAATLEIDEPDLL
>NZ_CP012479.1|WP_054012540.1|3581538_3581856_-|hypothetical-protein
MTDRSQHPPVTFEAARQIVASARRGSSRPGHYMVAAYGYESPRHWQIIDGSRDLLIDNDYAFQPVGEGPVLVDKITGELIELPSLYNFAYLNTFTPVGDVPSDEE
>NZ_CP012479.1|WP_054012541.1|3581982_3582651_+|recombinase-family-protein
MRTPETLAVVGYIRVSTSKQDVSPEVQQAALEAEAVRHGWALTIYRENAASATSLKNRPILADALAQLKAGRFDALAVSKLDRLSRSVADFAAMLETANRQRWALICLDLGIDTSTITGAAMAQVTCTFAEMERKKIAERTSAAMRVKAAAGQHMGRRSVLDVATVQRISGDRADGLSLARIAAGLNADGIPTATGKTWYASTIRQVLTSAKARDFATLCNK
>NZ_CP012479.1|WP_054012542.1|3582780_3583488_-|DUF3800-domain-containing-protein
MLVAFVDESYPDQKNKYCVSAVVVDMIGLFDLAAGFRGVMSYAHSAFGVDPQTELHGHEIMQQRNGWEPIAGKHRAAASVYGKALTAIVDSGAKVFLQGMDVERQNARYSNPHDPHEVVLRHVLERVDEYARQKQLDVLVMADQEPGQAQHAAMIELFSQTGTPGYRSSTLSRIIQPVRFDDSHYHAGLQAADLAAYLYNRKCCDRGAHPRALKARKDLSAKLSPAVHHERFWMP
>NZ_CP012479.1|WP_054012543.1|3583803_3584133_+|hypothetical-protein
MAKEGKKAWLITYEHAWKAGDDVAVLAVLNPATGHGKVEDVVGLFWRQLSLRGSEKLAYMNPKAPPPYRPKWAAPEECTCGHSQVVVARLVTGLRASNDAGSIDGLVWD
>NZ_CP012479.1|WP_054012544.1|3584239_3584704_-|hypothetical-protein
MTKNEATMTPEESVSGVAEPSDPSMFKARETELSQPAGELLDKYLADFRIQLEARARVKADGFDNVQSKHVTDARAELLASRLDEIANIGMMIVLPIGLFLFGIGINELLRPSNVQGISPGYVWVLLLGAAAVSFSLGVYISKSVLKRLFGRRK
>NZ_CP012479.1|WP_054012545.1|3584672_3585290_-|hypothetical-protein
MTTGQYGDRPPSDDGSAVPENAETAARIAAEQALETATASAEAARRAQRIKIVELLDSTDSLQSRQHIIEQRVWILSLYLSILIAVTGLYFGYFYRSYIFETPRDWILHGLLWLSIVSGMGVVLAAWRKSMSNGRALFETAVSLFQSQISHAWHELDVAERDLLKARNDALHEQASRDDEADSIWNYRAIVDDYVDDEERGNDDA

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Crispr_ID: NZ_CP012479_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012479_6

3733842-3733941

Orphan

Consensus_repeat	Method
GGTGGTCGCGCGCGTCGAGACCGAGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012479_6

>merge|NZ_CP012479|6|3733842-3733941|CRISPRCasFinder
GGTGGTCGCGCGCGTCGAGACCGAGCCGGCCTCCACCGGGCACGGGATCTCGACAGGCTCGATCACCGCTTCGGTGGTCGAGCGCGTCGAGACCGAGCCG

>NZ_CP012479|6|5|3733842-3733941|CRISPRCasFinder
GGTGGTCGCGCGCGTCGAGACCGAGCCG	GCCTCCACCGGGCACGGGATCTCGACAGGCTCGATCACCGCTTC
GGTGGTCGAGCGCGTCGAGACCGAGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012479.1\|WP_044574616.1\|3731551_3731719_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|179075
NZ_CP012479.1\|WP_054013230.1\|3734690_3736571_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP012479.1\|WP_054013232.1\|3742397_3743492_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|223682
NZ_CP012479.1\|WP_038465689.1\|3731241_3731547_-\|30S-ribosomal-protein-S14	unknown	unknown	gnl\|CDD\|181574
NZ_CP012479.1\|WP_054012661.1\|3740441_3741335_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP012479.1\|WP_054012656.1\|3736684_3737149_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP012479.1\|WP_054012648.1\|3723710_3725297_+\|DUF853-family-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP012479.1\|WP_054012658.1\|3737597_3738803_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238624
NZ_CP012479.1\|WP_054012650.1\|3726427_3728359_-\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|271321
NZ_CP012479.1\|WP_054012657.1\|3737336_3737570_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054012653.1\|3731718_3731955_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP012479.1\|WP_054013233.1\|3743525_3744551_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
NZ_CP012479.1\|WP_054012654.1\|3732346_3733132_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238870
NZ_CP012479.1\|WP_054012649.1\|3725356_3726343_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012479.1\|WP_054012652.1\|3730719_3731007_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259859
NZ_CP012479.1\|WP_107503961.1\|3728358_3730488_-\|bifunctional-copper-resistance-protein-CopD/cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|378238
NZ_CP012479.1\|WP_054012660.1\|3739458_3740445_-\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NZ_CP012479.1\|WP_054012647.1\|3721788_3723609_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP012479.1\|WP_082369639.1\|3741336_3742389_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|227119
NZ_CP012479.1\|WP_054012659.1\|3738934_3739354_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319899

Protein	Function_ID	Function_description	E-value
NZ_CP012479.1\|WP_044574616.1\|3731551_3731719_-\|50S-ribosomal-protein-L33	gnl\|CDD\|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	1.60267e-20
NZ_CP012479.1\|WP_054013230.1\|3734690_3736571_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.12816e-155
NZ_CP012479.1\|WP_038465689.1\|3731241_3731547_-\|30S-ribosomal-protein-S14	gnl\|CDD\|181574	PRK08881, rpsN, 30S ribosomal protein S14; Reviewed.	8.63095e-53
NZ_CP012479.1\|WP_054012661.1\|3740441_3741335_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.75859e-131
NZ_CP012479.1\|WP_054012656.1\|3736684_3737149_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.29907e-21
NZ_CP012479.1\|WP_054012648.1\|3723710_3725297_+\|DUF853-family-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP012479.1\|WP_054012658.1\|3737597_3738803_-\|amidohydrolase-family-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	3.7079e-109
NZ_CP012479.1\|WP_054012650.1\|3726427_3728359_-\|redoxin-domain-containing-protein	gnl\|CDD\|271321	cd14951, NHL-2_like, NHL repeat domain of NHL repeat-containing protein 2 and similar proteins. NHL repeat-containing protein 2 (NHLRC2) and related bacterial proteins; members of this eukaryotic and bacterial family are uncharacterized, the NHL repeat domain is found C-terminally of a thioredoxin domain. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	2.12518e-151
NZ_CP012479.1\|WP_054012653.1\|3731718_3731955_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	3.41086e-30
NZ_CP012479.1\|WP_054013233.1\|3743525_3744551_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	3.61327e-44
NZ_CP012479.1\|WP_054012654.1\|3732346_3733132_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238870	cd01832, SGNH_hydrolase_like_1, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.	5.3931e-64
NZ_CP012479.1\|WP_054013232.1\|3742397_3743492_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	1.37822e-74
NZ_CP012479.1\|WP_054012652.1\|3730719_3731007_-\|HU-family-DNA-binding-protein	gnl\|CDD\|259859	cd14435, SPO1_TF1_like, Bacteriophage SPO1-encoded TF1 binds and bends DNA. This group contains proteins related to bacillus phage SPO1-encoded transcription factor 1 (TF1), a type II DNA-binding protein related to the DNA sequence specific (IHF) and non-specific (HU) domains. Type II DNA-binding proteins bind and bend DNA as dimers. Like IHF, TF1 binds DNA specifically and bends DNA sharply. Bacteriophage SPO1-encoded TF1 recognizes SPO1 phage DNA containing 5-(hydroxymethyl)-2'-deoxyuridine as opposed to thymine, Related family members includes integration host factor (IHF) and HU, also called type II DNA-binding proteins (DNABII), which are small dimeric proteins that specifically bind the DNA minor groove, inducing large bends in the DNA and serving as architectural factors in a variety of cellular processes such as recombination, initiation of replication/transcription and gene regulation. IHF binds DNA in a sequence specific manner while HU displays little or no sequence preference. IHF homologs are usually heterodimers, while HU homologs are typically homodimers (except HU heterodimers from E. coli and other enterobacteria). HU is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups).	2.082e-34
NZ_CP012479.1\|WP_107503961.1\|3728358_3730488_-\|bifunctional-copper-resistance-protein-CopD/cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|378238	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG). Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as found in Bacillus subtilis.	1.12676e-76
NZ_CP012479.1\|WP_054012660.1\|3739458_3740445_-\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	1.31188e-69
NZ_CP012479.1\|WP_054012647.1\|3721788_3723609_+\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	1.02267e-08
NZ_CP012479.1\|WP_082369639.1\|3741336_3742389_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|227119	COG4779, FepG, ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism].	2.9525e-62
NZ_CP012479.1\|WP_054012659.1\|3738934_3739354_-\|VOC-family-protein	gnl\|CDD\|319899	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to bleomycin resistance proteins, glyoxalase I, and type I extradiol dioxygenases.	1.4184e-42

>NZ_CP012479.1|WP_054012654.1|3732346_3733132_-|SGNH/GDSL-hydrolase-family-protein
MEFSARYVALGDSFTEGLGDTDASLPNQVRGWADRAAEQLALHHPDGPGAFGYANLAIRGKKMKQILSEQVDAAVAMNPTLVTSYAGINDILRPKVDIDAMVAGYGEAIGKLRATGARVLIFTGFDASSSKVFAGIRGRTAVYNELVREVAELHGAELVDYWRFREYNDWRLWGVDRMHMSTPGHINMANHLLETLGESARIPMPELPPIPVRTTAETLKDNAAWTKEYVGPWISRRLRGVSSGDNLDARWPELRSPLQQH
>NZ_CP012479.1|WP_054012653.1|3731718_3731955_-|50S-ribosomal-protein-L28
MAAHCQVTGAEPGFGHSISHSHRRNKRRFDPNIQKKRYWVPSLRRNVTLQVSAKGIKTIDVRGIDSVVASILARGVKL
>NZ_CP012479.1|WP_044574616.1|3731551_3731719_-|50S-ribosomal-protein-L33
MAKDKDVRPIIKLKSTAGTGFTYVTRKNRRNTPDRLVLKKYDPKIRQHVEFREER
>NZ_CP012479.1|WP_038465689.1|3731241_3731547_-|30S-ribosomal-protein-S14
MAKKSMIAKNEQRKVIVERYAEKRLALKKALVNPASTDEEREAARLGLQKLPRNASPVRVRNRDAIDGRPRGTLQKFGISRVRFRKMAHAGELPGIKKSSW
>NZ_CP012479.1|WP_054012652.1|3730719_3731007_-|HU-family-DNA-binding-protein
MAKNRSELVAEVAAKAETSQTAVNGVLDALFSVFESSVAAGEKITIPGWLSIERTDRAARTGRNPQTGETIQIAAGHSVKLSAGSKLKAAVSTKK
>NZ_CP012479.1|WP_107503961.1|3728358_3730488_-|bifunctional-copper-resistance-protein-CopD/cytochrome-c-oxidase-assembly-protein
MRSRWWWLALAAAVLGVVGALLWTGAAGVTDLADPGAFTRWGLPVATTIHNMALASVVGALVFAVVILPKDLKARRPHSGNHKSQAEKRALMPEHPAFTRVMALAAVAGCVWTMSAIAVLVLTYSSISGLPLAATSDYANQLVFFMTELPVGQAWLTVVIAAAVVTTMVFGIRSVSGLAVPLVLALLAFIPQALIGHSASSADHDGAVNSLFLHITSVSLWLGGIVVLVVVSGVLGKLTAPTLKRFSALAIFAFVGVSGSGVLNASIRITNWHDLFYSTYGQLILAKSAATIVLGVIGYMHRSWIIPRLSGGEKSSTARSTRRLLWQLVFGELLIMGITSGLAVGLSRSAPPQSTELVEAALSPAQTLTGYALPPELTFSRWFTEWRMDWLWVAFALVAGTAYLSGLLKLRRRGDKWPVLRSISWFIGLLALVYITSGGTAVYGAVLFSAHMVEHMSLMVIAPLFLALGSPVSLALQALTPRRDGSRGIREWILVLVHSKFSQVVTHPLFAAANFAGSLVLFYYSPAFDLAMRYHVGHELMIIHFTLTGYIFIMSMIGSDPLPRRAPFPLRLVLLLATMAFHAFFGVTLMMATSLLNGEYFGNMGRAWGDSALVDQQTAGGIAWGVGEVPTLAIAMGVAYMWSRSDARETKRKDRAADRNKDADLNAYNDMFAQLAARDATIDPARQGARQQTAPPAPEAPAATQGEKH
>NZ_CP012479.1|WP_054012650.1|3726427_3728359_-|redoxin-domain-containing-protein
MESTLSTSSTVRVRASELEGRGWLNTGGAELGLEKLRGKIVLLDFWTFCCINCLHVLDELRPLEELYKDVLVTVGVHSPKFEHEADPVALAAAVERYDIHHPVLDDPELLTWQAYSARAWPTLVVVDPEGYIVAHLSGEGHAAGLASLIPEIIAEHEAKGTLHRGDGPYVAPEPVSRDLRFPGKVLPLPGGTFLVSDTGHHALVEMAADLATVVRRIGSGAKGFTDGAATEAEFNEPQGLALLPAELAAAVGYDVVVADSVNHRLRGVTLATGAVRTVAGNGVQRLLDAGPARVNDDGANASETFLGNAPLDVALSSPWDVAYSSVLKTVVVAMAGTHQIFGFDPATGAVTIVAGNGLEGLLDGPADQAWFAQSSGVTEDAQGNIWVADSETSALRVLKFAQDGSVTVETAIGEGLFDFGFRDGDADQARLQHPLGVAVLPDGSVAIADTYNGAVRRYDPATKQVSTLARGLAEPSDVLLDESGDVPLLIVVEANKHQLIRLPLPKNALQVDEGAVQTQRPKTPVAAGELALTIRFKAPTGQKLDDRWGDPTQLKVSSTPPELLLDGAGTSVGLSRTLRLSPDVPEGVLHFTARAAACDGPEDANGEIPDHAACHLYQQDWGIPVLLDADGATELALDLRGMD
>NZ_CP012479.1|WP_054012649.1|3725356_3726343_+|hypothetical-protein
MKNGTQLIKIGAAWLLILMLAIAAAIVTITMVNSSSFGPQKTVQNYLTALKDGNGAKALGLLQARVPAGNAAVLDGPGLAKSQQAVKDVKIDDPVNAANNQKSVHVSYTVGGTSLATDFKLAPGPKHWLFFDSWTMVPTTLPTVNVSVVNANQASINGVAVNMPDGKNSFTVFYPGSYEVEYRSALFAAPPVTRTVSNPLTSVPAVALATGPTSELLAQVDGTIHKYLDACAKQAVLMPSNCPMSAATDNRVTSAVTWTVVEYPDVNISPYGGKWVLAPLTVKAQVAYQEQDLFTGLISDVKTAEDFGFTAKLSIDGSTVDVTPVVSY
>NZ_CP012479.1|WP_054012648.1|3723710_3725297_+|DUF853-family-protein
MATKTPAEIIATFQAGYTFTGSSIALGAAIVDGAVHPEAQIGLPLAMMNRHGLVAGATGTGKTVTLHMMAEQLSTAGVPVFMADIKGDLSGLATAGEGSDKLTARTQALGQQWESKAFPVEFLALGGAGNGVPVRATLTSFGPILLARVLGLNETQESSLQLVFHYADTKSLELYDLKDLRAVIQFLTSDEGKADLEELGGLSKATAGVILRNLITLDAQGMSEFFGMPEFDTAELLRTAPDGRGVISCLELPSVQDKPLLFSTFLMWMLADLFRDLPEVGDADKPKLVFFFDEAHLLFNGASKAFLNAITQTVRLIRSKGVGIFFVTQTPKDVPGDILAQLANRVQHALRAFTPDDAKALKATVSTFPVSDYELEEVLTSAGIGEAVVTVMNENGAPTPVALTRMRAPGSLMGPSTDAAVKAVIAASALLPTYGTAVDPVSAYEKLQAPAAAPTPATGPAVGTPLPPPPPVALPTPKNDGGGVASEVMGALGGALGGGVKSMIRSMGSQLGRSLMRDMFGTAPRKRR
>NZ_CP012479.1|WP_054012647.1|3721788_3723609_+|HNH-endonuclease
MSNRVDDPGSRGGNTTADVAAILSAIVLPSIERFTSDSPLLAGLPPYTPCPAPTPEPLSRALVARSVYDDAVAALSALKRLEDATAACGASLIDRLMNAAAVEGTALSLDPWQSDMAEVSARVEIATVLCIPEGTAAILAHHSTELLESHPAALDALSAGALSWRHAGIIVDETSTLAQTPGMSAEDLRSFEQRLLKAALHTTPSAFKSKARRLRESTHPESLPVRTKEAFLKRDIRMEPGRDGMSWLTLHLPAPAAEGIWVHCTREARKLQGPSENRTLMQLRADIAAALLLGQQLPRNAESELAAEAGIGAESDTGFGGCHTLWAADGYVDGLVDGVAEDPLREYLDQLDAVRDGMAVADPPMPQAQILVTVPALGLLGNTNQPANLVGYGPIPETVARKLLASSDTFLRILTDPVSGEPLDTAPERYWIRESERAVLRATAGSCYFPNCTNPVLDTETDHLTPWEYGGASTSENQRPACKRHHLLKHFKDDKDKHGRYRTDRDPDRAGIRLRGWTPVSTRDGGVGWRSPSGKYHPPLPREIPPSAYPAWLKRHIDKTLNNAAATDLRDTTADDAPTGPATPANGVKASIFEQILVEYESPHAA
>NZ_CP012479.1|WP_054013230.1|3734690_3736571_-|ABC-transporter-ATP-binding-protein
MLTQNPGRPGAPGNGNPNRPGAGNRAGGRGLGRVNPADRTQLERQPVSLKRVAALFAPHKVTIAVVVLLLSASSIVSLAQPFLVRHIIDTALPHKDVRLLLWLTGGLVAVAAATSVIGVLQTWMTTGMGQTIMHKLRTQLFTHLQKQSLGFFTRTRGGEVQSRLNNDITGMQTVITSTATGIASNVTTTVATAVAMVALSPKLSLLSLIVLPPAIWFTRRVALLRRDITSTLQSELATMNTQVEEGLSISGVRLAKTLGTTGRDASRYTTSSARLIDLEMRSQLAGRWRMAAMGIIFSAIPAVIYLAAGLPATSGGMTIGTLVAFTALQGTIFRPIMGLMSLGVQWVTAMALFSRIFEYLDLKPEITAPANPAKLDPATVRGEVRFEGVRFAYDDGTDVLHGIDLALPAGETTAVVGPTGSGKSTMGSLVSRLHDATAGRITIDGVDVRDIAPEDLTRIVGVVSQETYLIHDTIRENLLLAKPDADDAELWSALASAQIADLIAGLPDGLDTMVGARGHRFSGGEQQRLAIARTILRNPKVLVLDEATSALDNTTEALVQSALDRLAVGRTTLTIAHRLSTVEKAEQLVVLAGGTIVEAGSPAALQDADGAYARLRESREEEPAAV
>NZ_CP012479.1|WP_054012656.1|3736684_3737149_+|MarR-family-transcriptional-regulator
MRSQPADPADLGELFHAAFRGLRRTWADQLSPWDLTPHQWRALSTLLRGGGYSGACSGNLSDGGGLRLKDLADRLRIAPRSATEVVDQLEAKGLVRREPDPTDRRATLVRATAEGEELFAKAGAERREKANEYFGRLSADDQADLARILGQLGH
>NZ_CP012479.1|WP_054012657.1|3737336_3737570_+|hypothetical-protein
MSLEVSAESARATRVRSLMPLIRGNRVEARVLDMVVHRGFVDDVAPEARVLWIISEDTGRRKLIPLDTFSLWLVPAA
>NZ_CP012479.1|WP_054012658.1|3737597_3738803_-|amidohydrolase-family-protein
MSNAATGTLTITNALIFDGSSPELVEGSIVMRDGVIEAVGDVAPVGEVVDAGGKVVVPGLIDAHFHAYAVGLGGFEVEKGPLSYAALVGAQRLGSALKRGFTTVRDVAGGDIGLAKAVRGGVFASPRYLFTGPAMSQTGGHGDPRAEDLDLCFSHGHMCSVIDGVDDLRKAVRDRFRTGSHAIKIMTSGGVVSLTDPIRVPQYSAAEIQAVVEEAGRRNSYVAAHAYSPEAIRHSVENGVRTIEHGNLMDQETAELMARHGSYLVPTLAAYDAMNRRGEALGLHPVSQVKNAEVLSAGKTAIALALAAGVKVGFGSDLMGELENDQLVGVRLQSESAGMFETLKSMTSVNAEIIQDAGLGRIGAGAHADVVILDGNPFDDSAVLWDEARPRVVIQAGRIVA
>NZ_CP012479.1|WP_054012659.1|3738934_3739354_-|VOC-family-protein
MTTRLNPYLGFRGNAKDAMEFYQSVFGGELTLSSFRDGGGGVEEAELDQIMHGALLTDGGLSLMGSDTPSHMEFTPGTNHQVSLTGEDEAELRGYWDKLSASGTVTMPLEKAPWGDTFGMCVDGYGIPWLVNISGAPQG
>NZ_CP012479.1|WP_054012660.1|3739458_3740445_-|siderophore-interacting-protein
MSAATIERPAEVIRPIRVFNGTVGAVRQLTPHFLRITVVGPELEHFGTNADGHTLDLRIKVMIPVPGHPLPDFGAVEGVLDDGWYQTWLAMDPDTRGYMRTYTVRALRPAVPASGGRAAVSAEVDLDFVMHLDGGSGPAALWASQAQVGDPMVLIGPDARSGDCLGIEFDLGAANRVLLVGDETAVPAIAGILATLPAHVTGHAVLEVPAAEDFLDLPTESGVEVRWLARAGGSAGAAAHGGLMSADVHRIIAPSACSRGEEPDDVDIDADILWETPLMEPGEGFYAWIAGEAAAVRELRRYLVRDVGVDRNAVAFMGYWRLGKAQAS
>NZ_CP012479.1|WP_054012661.1|3740441_3741335_-|ABC-transporter-ATP-binding-protein
MSAKTSTPASALGAEGVSLGYGDRRIVDSLSVELPAGRVTIIVGANACGKSTLLRGLARLLKPSAGVVQLNGTDIHKMPTKTLARELGILPQTPTAPDGITVADLVGRGRSPHQGWFRQWTADDDAAVAEALTATGTLELAERSIDELSGGQRQRVWIAMALAQQTDILLLDEPTTYLDLAHQVEVLDVVSELNARRGITVAIVLHDLNLAARYADHLIAMKAGRIVAQGEPSAVMTAELVQEVFGLESVVVPDPVVGSPMVVPVGRRAAAFAAAAKKSDPAVPTISAISAMEGVQA
>NZ_CP012479.1|WP_082369639.1|3741336_3742389_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MAQAVEHAAEPAAAAAVRALRGRPRRRRRLVTAALALLVFGLLAVNILLGSYTVTIPDFLRLLAGAHIPGASFIVMDNKLPQALTGLLAGASFGVAGAIFQSMLRNPLASPDIIGISYGASATAVAAIVIFGISGVGVSLAAVIGALVVALLITVLARGRGGSGLILIGIGAAAFMQAAVTFMLARADINNAQDAMVWLTGSLNSADWGRVIVLTVALAVLLPVVAFASRGLQGLQLGEDTAAGLGFNVPRTRILLTVLGVLLAALPTAAAGPIAFVAFLSGPIAKRLNGGAPSLGLSALVGAGIVLGANFLAINGIPGTSLPVGVVTGALGAPFLLWLLISTNRNSQGG
>NZ_CP012479.1|WP_054013232.1|3742397_3743492_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MAATQSTTAAPAAAITAPSVAPSVAGTVTAGRFSGRSRALWTVVAVAVLVLLVLASLAIGARYVPLPVVLDTLVNPDPSNGDHAVVLSRLVRTVAGLVVGASLGLAGTSMQGVARNPLADPGILGINAGASLAVVASIFFLGASSVSSYLWFAFAGSAVAAVVVYSVASLGRDGATPVKLALAGAAMAAGMGSLMSAMLVTSQASLELFRTWQVGALAGKSWDSVTAVLPFVAVGAVILLGTGKLLNNLALGDDVARGLGVRPGLGRAVSAIGIVLLCGSATALAGPIGFIGLVVPHMLRGIFGPDYRWLLPLSLVAAPAVLLFADVVGRVILLPGEVPAGIVAALMGAPVFIAVVRRGKRAAL
>NZ_CP012479.1|WP_054013233.1|3743525_3744551_-|ABC-transporter-substrate-binding-protein
MGLFVSVAAMGVALAGCSTGAVGAESSGQNTAPADAFPVTVKHAYGTTVIKSAPQRIATVSWVNDDVAIALGVIPVGMPKHAWGGNAQGSTPWKDAALAKAGAGIGSAKAPVQYSEADGVNFTEVAKANPDIILAAYSGLSKEDYDKLSKIAPVIAFPKVAYGTSWQDSTTMIGAALGKSAQATALITATEKTIAEKAAKYPQIKGKTFIYGNLEPDSSTGVNVYTAEDNRPRFLSSIGMVEAPVVVAAEKKATGFYIPWSAEKANELASQVFVSWVPDNKTKAAIIADPLLGQIPAVKSGAFVADPDTTLTLAISASSPLSLPWALDAFLPELGAAADKA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012479_1	1.1\|167901\|31\|NZ_CP012479\|CRISPRCasFinder	167901-167931	31	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	465604-465634	4	0.871
NZ_CP012479_4	4.7\|2372737\|30\|NZ_CP012479\|CRT	2372737-2372766	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1124639-1124668	5	0.833
NZ_CP012479_4	4.7\|2372737\|30\|NZ_CP012479\|CRT	2372737-2372766	30	MN103533	Mycobacterium phage Weirdo19, complete genome	51285-51314	5	0.833
NZ_CP012479_1	1.1\|167901\|31\|NZ_CP012479\|CRISPRCasFinder	167901-167931	31	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	397109-397139	6	0.806
NZ_CP012479_4	4.1\|2372485\|30\|NZ_CP012479\|CRT	2372485-2372514	30	NZ_CP029835	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence	168143-168172	6	0.8
NZ_CP012479_4	4.7\|2372737\|30\|NZ_CP012479\|CRT	2372737-2372766	30	NZ_LN868942	Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence	38596-38625	6	0.8
NZ_CP012479_4	4.7\|2372737\|30\|NZ_CP012479\|CRT	2372737-2372766	30	NZ_CP031420	Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence	11347-11376	6	0.8
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MN703405	Mycobacterium phage Aneem, complete genome	28285-28314	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MH338237	Mycobacterium phage Joselito, complete genome	28285-28314	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MK524507	Mycobacterium phage Orange, complete genome	27834-27863	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MK524514	Mycobacterium phage Bud, complete genome	27847-27876	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MN310547	Mycobacterium phage Hutc2, complete genome	27839-27868	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	NC_031257	Mycobacterium phage Mulciber, complete genome	27836-27865	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MH338236	Mycobacterium phage Ebony, complete genome	28247-28276	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MK494130	Mycobacterium phage Fibonacci, complete genome	27839-27868	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MK524511	Mycobacterium phage Bowtie, complete genome	28292-28321	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MK524519	Mycobacterium phage Salz, complete genome	28195-28224	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MK524513	Mycobacterium phage Munch, complete genome	28285-28314	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MF140410	Mycobacterium phage Et2Brutus, complete genome	28207-28236	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MH536828	Mycobacterium phage Snape, complete genome	27838-27867	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	KY471460	Mycobacterium phage Jabith, complete genome	28345-28374	7	0.767
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	MN892487	Mycobacterium phage Mabel, complete genome	28257-28286	7	0.767
NZ_CP012479_4	4.5\|2372653\|30\|NZ_CP012479\|CRT	2372653-2372682	30	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	268406-268435	7	0.767
NZ_CP012479_4	4.5\|2372653\|30\|NZ_CP012479\|CRT	2372653-2372682	30	NZ_CP016821	Rhodococcus sp. p52 plasmid pDF01, complete sequence	143329-143358	7	0.767
NZ_CP012479_4	4.1\|2372485\|30\|NZ_CP012479\|CRT	2372485-2372514	30	NZ_CP015203	Rhodococcus sp. 008 plasmid pR8L1, complete sequence	164007-164036	8	0.733
NZ_CP012479_4	4.1\|2372485\|30\|NZ_CP012479\|CRT	2372485-2372514	30	NC_007491	Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence	131520-131549	8	0.733
NZ_CP012479_4	4.1\|2372485\|30\|NZ_CP012479\|CRT	2372485-2372514	30	NZ_CP044283	Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence	24479-24508	8	0.733
NZ_CP012479_4	4.1\|2372485\|30\|NZ_CP012479\|CRT	2372485-2372514	30	NZ_CP017303	Rhodococcus sp. YL-1 plasmid pYLL1 sequence	366042-366071	8	0.733
NZ_CP012479_4	4.1\|2372485\|30\|NZ_CP012479\|CRT	2372485-2372514	30	NZ_CP017304	Rhodococcus sp. YL-1 plasmid pYLL2 sequence	312452-312481	8	0.733
NZ_CP012479_4	4.1\|2372485\|30\|NZ_CP012479\|CRT	2372485-2372514	30	NZ_CP050125	Rhodococcus erythropolis strain KB1 plasmid plas1, complete sequence	26346-26375	8	0.733
NZ_CP012479_4	4.1\|2372485\|30\|NZ_CP012479\|CRT	2372485-2372514	30	NC_005073	Rhodococcus erythropolis linear plasmid pBD2, complete sequence	119503-119532	8	0.733
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	741535-741564	8	0.733
NZ_CP012479_4	4.3\|2372569\|30\|NZ_CP012479\|CRT	2372569-2372598	30	NZ_CP041197	Pseudarthrobacter sp. NIBRBAC000502770 plasmid pMK-1, complete sequence	16652-16681	8	0.733
NZ_CP012479_4	4.5\|2372653\|30\|NZ_CP012479\|CRT	2372653-2372682	30	NZ_CP041197	Pseudarthrobacter sp. NIBRBAC000502770 plasmid pMK-1, complete sequence	16652-16681	8	0.733
NZ_CP012479_1	1.1\|167901\|31\|NZ_CP012479\|CRISPRCasFinder	167901-167931	31	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	164173-164203	9	0.71
NZ_CP012479_1	1.1\|167901\|31\|NZ_CP012479\|CRISPRCasFinder	167901-167931	31	NZ_CP033582	Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence	524521-524551	9	0.71
NZ_CP012479_4	4.5\|2372653\|30\|NZ_CP012479\|CRT	2372653-2372682	30	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	741535-741564	9	0.7

1. spacer 1.1|167901|31|NZ_CP012479|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.871

tcggtcggggcccctcgcggtcgtggcccca	CRISPR spacer
ccggccggggcccctcgcgggcgtggccccg	Protospacer
.***.*************** *********.

2. spacer 4.7|2372737|30|NZ_CP012479|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 5, identity: 0.833

--cgctgcggtgttcaccgaagtgttggcagc	CRISPR spacer
gtcgct--ggtcttcaccggagtgttggcagt	Protospacer
  ****  *** *******.***********.

3. spacer 4.7|2372737|30|NZ_CP012479|CRT matches to MN103533 (Mycobacterium phage Weirdo19, complete genome) position: , mismatch: 5, identity: 0.833

-cgctgcggtgttcaccgaagtgttggcagc	CRISPR spacer
acgc-gcggtgttccccgaagtgtgggccga	Protospacer
 *** ********* ********* *** *

4. spacer 1.1|167901|31|NZ_CP012479|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.806

tcggtcggggcccctcgcggtcgtggcccca	CRISPR spacer
tcgcagcgggtccctcgcggccgtggcccca	Protospacer
***    ***.*********.**********

5. spacer 4.1|2372485|30|NZ_CP012479|CRT matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.8

ggttgccgaattcaccgaggtgttggcggc	CRISPR spacer
gcgtgccgggttcaccgaggtgttggtgac	Protospacer
*  *****..****************.*.*

6. spacer 4.7|2372737|30|NZ_CP012479|CRT matches to NZ_LN868942 (Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence) position: , mismatch: 6, identity: 0.8

cgctgcggtgttcaccgaagtgttg-gcagc	CRISPR spacer
cgctgcggtgtccaccgcagtgtcatgccg-	Protospacer
***********.***** *****.. ** *

7. spacer 4.7|2372737|30|NZ_CP012479|CRT matches to NZ_CP031420 (Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

cgctgcggtgttcaccgaagtgttg-gcagc	CRISPR spacer
cgctgcggtgtccaccgcagtgtcatgccg-	Protospacer
***********.***** *****.. ** *

8. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MN703405 (Mycobacterium phage Aneem, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

9. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MH338237 (Mycobacterium phage Joselito, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

10. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MK524507 (Mycobacterium phage Orange, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

11. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MK524514 (Mycobacterium phage Bud, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

12. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MN310547 (Mycobacterium phage Hutc2, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

13. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to NC_031257 (Mycobacterium phage Mulciber, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

14. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MH338236 (Mycobacterium phage Ebony, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

15. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MK494130 (Mycobacterium phage Fibonacci, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

16. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MK524511 (Mycobacterium phage Bowtie, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

17. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MK524519 (Mycobacterium phage Salz, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

18. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MK524513 (Mycobacterium phage Munch, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

19. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MF140410 (Mycobacterium phage Et2Brutus, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

20. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MH536828 (Mycobacterium phage Snape, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

21. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to KY471460 (Mycobacterium phage Jabith, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

22. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to MN892487 (Mycobacterium phage Mabel, complete genome) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cgactacgtggtcaccgaggtgttcgcggc	Protospacer
 *    **** *******.***********

23. spacer 4.5|2372653|30|NZ_CP012479|CRT matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgccgc	CRISPR spacer
cgcgcacgtgttcaccgacgtgttcggcgt	Protospacer
 **.  ************ ******* **.

24. spacer 4.5|2372653|30|NZ_CP012479|CRT matches to NZ_CP016821 (Rhodococcus sp. p52 plasmid pDF01, complete sequence) position: , mismatch: 7, identity: 0.767

ggcagccgtgttcaccgaagtgttcgccgc	CRISPR spacer
cgcgcacgtgttcaccgacgtgttcggcgt	Protospacer
 **.  ************ ******* **.

25. spacer 4.1|2372485|30|NZ_CP012479|CRT matches to NZ_CP015203 (Rhodococcus sp. 008 plasmid pR8L1, complete sequence) position: , mismatch: 8, identity: 0.733

ggttgccgaattcaccgaggtgttggcggc	CRISPR spacer
cgttgccggattcaccgtggtgttcgttct	Protospacer
 *******.******** ****** *.  .

26. spacer 4.1|2372485|30|NZ_CP012479|CRT matches to NC_007491 (Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence) position: , mismatch: 8, identity: 0.733

ggttgccgaattcaccgaggtgttggcggc	CRISPR spacer
cgttgccggattcaccgtggtgttcgttct	Protospacer
 *******.******** ****** *.  .

27. spacer 4.1|2372485|30|NZ_CP012479|CRT matches to NZ_CP044283 (Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence) position: , mismatch: 8, identity: 0.733

ggttgccgaattcaccgaggtgttggcggc	CRISPR spacer
cgttgccggattcaccgtggtgttcgttct	Protospacer
 *******.******** ****** *.  .

28. spacer 4.1|2372485|30|NZ_CP012479|CRT matches to NZ_CP017303 (Rhodococcus sp. YL-1 plasmid pYLL1 sequence) position: , mismatch: 8, identity: 0.733

ggttgccgaattcaccgaggtgttggcggc	CRISPR spacer
cgttgccggattcaccgtggtgttcgttct	Protospacer
 *******.******** ****** *.  .

29. spacer 4.1|2372485|30|NZ_CP012479|CRT matches to NZ_CP017304 (Rhodococcus sp. YL-1 plasmid pYLL2 sequence) position: , mismatch: 8, identity: 0.733

ggttgccgaattcaccgaggtgttggcggc	CRISPR spacer
cgttgccggattcaccgtggtgttcgttct	Protospacer
 *******.******** ****** *.  .

30. spacer 4.1|2372485|30|NZ_CP012479|CRT matches to NZ_CP050125 (Rhodococcus erythropolis strain KB1 plasmid plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ggttgccgaattcaccgaggtgttggcggc	CRISPR spacer
cgttgccggattcaccgtggtgttcgttct	Protospacer
 *******.******** ****** *.  .

31. spacer 4.1|2372485|30|NZ_CP012479|CRT matches to NC_005073 (Rhodococcus erythropolis linear plasmid pBD2, complete sequence) position: , mismatch: 8, identity: 0.733

ggttgccgaattcaccgaggtgttggcggc	CRISPR spacer
cgttgccggattcaccgtggtgttcgttct	Protospacer
 *******.******** ****** *.  .

32. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
acgcgccctgttcaccgatgtgttcgcgat	Protospacer
.   *** ********** *********..

33. spacer 4.3|2372569|30|NZ_CP012479|CRT matches to NZ_CP041197 (Pseudarthrobacter sp. NIBRBAC000502770 plasmid pMK-1, complete sequence) position: , mismatch: 8, identity: 0.733

ggcagccgtgttcaccgaagtgttcgcggc	CRISPR spacer
cccagccgtgttcaccgatgagttccatcc	Protospacer
  **************** * ****    *

34. spacer 4.5|2372653|30|NZ_CP012479|CRT matches to NZ_CP041197 (Pseudarthrobacter sp. NIBRBAC000502770 plasmid pMK-1, complete sequence) position: , mismatch: 8, identity: 0.733

ggcagccgtgttcaccgaagtgttcgccgc	CRISPR spacer
cccagccgtgttcaccgatgagttccatcc	Protospacer
  **************** * ****  . *

35. spacer 1.1|167901|31|NZ_CP012479|CRISPRCasFinder matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 9, identity: 0.71

tcggtcggggcccctcgcggtcgtggcccca	CRISPR spacer
cggacgcgggcgcctcgcggtcgtggcccgc	Protospacer
. *..  **** *****************

36. spacer 1.1|167901|31|NZ_CP012479|CRISPRCasFinder matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 9, identity: 0.71

tcggtcggggcccctcgcggtcgtggcccca	CRISPR spacer
cggacgcgggcgcctcgcggtcgtggcccgt	Protospacer
. *..  **** *****************

37. spacer 4.5|2372653|30|NZ_CP012479|CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

ggcagccgtgttcaccgaagtgttcgccgc	CRISPR spacer
acgcgccctgttcaccgatgtgttcgcgat	Protospacer
.   *** ********** ******** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1025060 : 1037691

Arthrobacter_phage(50.0%)

portal,capsid,protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054010632.1\|1025060_1029056_-	peptidoglycan DD-metalloendopeptidase family protein	A0A222ZGY6	Arthrobacter_phage	3.6e-43	33.7
WP_054010634.1\|1029446_1029740_-	hypothetical protein	NA	NA	NA	NA
WP_054010635.1\|1029839_1030400_-	hypothetical protein	A0A222ZEQ0	Arthrobacter_phage	1.2e-24	37.9
WP_150117076.1\|1030464_1030869_-	hypothetical protein	NA	NA	NA	NA
WP_054010637.1\|1030861_1031116_-	hypothetical protein	NA	NA	NA	NA
WP_054010638.1\|1031108_1031450_-	hypothetical protein	NA	NA	NA	NA
WP_150117077.1\|1031449_1031977_-	hypothetical protein	A0A1D8ETD3	Propionibacterium_phage	1.2e-26	35.1
WP_160318876.1\|1031997_1032153_-	hypothetical protein	NA	NA	NA	NA
WP_054010640.1\|1032155_1033397_-\|capsid	phage major capsid protein	M4QRD3	Tetraselmis_viridis_virus	1.2e-29	30.9
WP_054010641.1\|1033414_1034140_-\|head,protease	HK97 family phage prohead protease	A0A222ZEN8	Arthrobacter_phage	1.4e-46	46.1
WP_054010642.1\|1034120_1035569_-\|portal	phage portal protein	A0A222ZFM5	Arthrobacter_phage	4.5e-76	40.6
WP_054010643.1\|1035568_1035769_-	hypothetical protein	NA	NA	NA	NA
WP_107503827.1\|1035788_1037402_-	hypothetical protein	A0A1D8ETA8	Propionibacterium_phage	6.7e-89	38.0
WP_054010645.1\|1037346_1037691_-	hypothetical protein	A0A1D8ETI0	Propionibacterium_phage	1.6e-08	43.4

DBSCAN-SWA_2

2383288 : 2447102

Bacillus_phage(22.22%)

tail,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054011657.1\|2383288_2384068_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_054011658.1\|2384220_2385666_-	NtaA/DmoA family FMN-dependent monooxygenase	NA	NA	NA	NA
WP_054011659.1\|2385678_2386827_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_054011660.1\|2386823_2387663_-	DUF1684 domain-containing protein	NA	NA	NA	NA
WP_054011661.1\|2387640_2388807_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_054011662.1\|2388803_2389817_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_192841690.1\|2389829_2390600_-	ATP-binding cassette domain-containing protein	A0A1J0FA64	Only_Syngen_Nebraska_virus	1.1e-09	29.2
WP_054013087.1\|2390632_2391553_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_054011664.1\|2392073_2394026_+	FAD/NAD(P)-binding protein	NA	NA	NA	NA
WP_082369333.1\|2394015_2394579_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_192841620.1\|2394615_2398248_-	chromosome segregation protein SMC	NA	NA	NA	NA
WP_192841621.1\|2398500_2399526_+	3-oxoacyl-ACP synthase III	NA	NA	NA	NA
WP_054013091.1\|2399540_2402246_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_054013092.1\|2402245_2403250_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_054011665.1\|2403442_2404411_-	hypothetical protein	NA	NA	NA	NA
WP_054011666.1\|2404662_2405634_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	3.0e-15	28.1
WP_082369335.1\|2405626_2406418_-	ribonuclease III	A0A2K9R4Y7	Dishui_lake_phycodnavirus	7.0e-23	33.3
WP_054011667.1\|2406481_2406685_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_082369583.1\|2406743_2407346_-	DUF177 domain-containing protein	NA	NA	NA	NA
WP_054011668.1\|2407499_2408204_+	hypothetical protein	NA	NA	NA	NA
WP_054011669.1\|2408200_2408566_+	hypothetical protein	NA	NA	NA	NA
WP_054011670.1\|2408847_2409363_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.8e-20	39.4
WP_054011671.1\|2409587_2410784_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_192841622.1\|2410783_2411557_+	fused MFS/spermidine synthase	NA	NA	NA	NA
WP_054011672.1\|2411605_2412070_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_054011673.1\|2412062_2412491_-	polyketide cyclase	NA	NA	NA	NA
WP_054011674.1\|2412608_2413619_+	hypothetical protein	NA	NA	NA	NA
WP_054011675.1\|2413724_2414780_-	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_054011676.1\|2415104_2415293_+	hypothetical protein	NA	NA	NA	NA
WP_107503863.1\|2415992_2416256_-	hypothetical protein	NA	NA	NA	NA
WP_054013095.1\|2416230_2417625_-	flotillin family protein	NA	NA	NA	NA
WP_054011677.1\|2417838_2418417_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_054011678.1\|2418435_2420652_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_054013096.1\|2420638_2421595_-	DAK2 domain-containing protein	NA	NA	NA	NA
WP_054011679.1\|2421617_2422634_-	thiamine-phosphate kinase	NA	NA	NA	NA
WP_082369584.1\|2423146_2423380_+	HNH endonuclease	A0A076G8D3	Mycobacterium_phage	5.1e-06	39.1
WP_054011680.1\|2423453_2424242_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_054011681.1\|2424299_2425679_-	hypothetical protein	NA	NA	NA	NA
WP_054011682.1\|2425688_2427950_-	hypothetical protein	NA	NA	NA	NA
WP_054011683.1\|2427946_2431126_-\|plate	putative baseplate assembly protein	A0A1J0GW37	Streptomyces_phage	1.1e-13	26.8
WP_082369336.1\|2431122_2433762_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_054011685.1\|2433758_2434121_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_054011686.1\|2434129_2434453_-	hypothetical protein	NA	NA	NA	NA
WP_054011687.1\|2434477_2434984_-\|plate	baseplate assembly protein	A0A127AW40	Bacillus_phage	1.4e-08	30.2
WP_054011688.1\|2434980_2436108_-	hypothetical protein	NA	NA	NA	NA
WP_054011689.1\|2436100_2436421_-	hypothetical protein	NA	NA	NA	NA
WP_054011690.1\|2436423_2437074_-	hypothetical protein	NA	NA	NA	NA
WP_150117135.1\|2437070_2437595_-	hypothetical protein	NA	NA	NA	NA
WP_054011692.1\|2437617_2439585_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_054011693.1\|2439577_2439871_-	hypothetical protein	NA	NA	NA	NA
WP_054011694.1\|2439860_2441873_-	ATP-binding protein	A0A2D2W2A9	Stenotrophomonas_phage	6.6e-09	33.1
WP_054011695.1\|2441869_2443150_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_054011696.1\|2443146_2443959_-	hypothetical protein	NA	NA	NA	NA
WP_054011697.1\|2443955_2444669_-	hypothetical protein	NA	NA	NA	NA
WP_054011698.1\|2444675_2445203_-\|tail	phage tail protein	NA	NA	NA	NA
WP_054011699.1\|2445212_2447102_-\|tail	phage tail sheath subtilisin-like domain-containing protein	J9PVC2	Bacillus_phage	3.6e-41	36.5

DBSCAN-SWA_3

3182781 : 3190905

uncultured_virus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054012238.1\|3182781_3184296_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.0e-94	40.7
WP_107503784.1\|3184517_3185414_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.4e-14	36.0
WP_054012239.1\|3185411_3187496_-	acyltransferase	A0A166XZF2	Gordonia_phage	1.8e-54	28.2
WP_054012240.1\|3187712_3189320_-	chaperonin GroEL	A0A219YK78	uncultured_virus	2.0e-154	54.2
WP_038464523.1\|3189417_3189714_-	co-chaperone GroES	A0A221S4M3	uncultured_virus	6.2e-17	47.4
WP_054012241.1\|3190023_3190905_+	ABC transporter ATP-binding protein	A0A2R8FFL6	Cedratvirus	1.1e-13	30.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012477

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP012479

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection