CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP005971	Pseudomonas syringae UMAF0158 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP005970	Pseudomonas syringae UMAF0158 chromosome, complete genome	1 crisprs	cas3,csa3,DinG,DEDDh,PD-DExK	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP005970_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005970_1

1803158-1803249

Orphan

Consensus_repeat	Method
CACGCTCCGCGTGGGAATGCAGTTCATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005970_1

>merge|NZ_CP005970|1|1803158-1803249|CRISPRCasFinder
CACGCTCCGCGTGGGAATGCAGTTCATGACGTCGTGTCGCGGCTGCCACGACTATCGTCCTCACGCTCCGCGTGGGAATGCAGTTCGTGACG

>NZ_CP005970|1|1|1803158-1803249|CRISPRCasFinder
CACGCTCCGCGTGGGAATGCAGTTCATGACG	TCGTGTCGCGGCTGCCACGACTATCGTCCT
CACGCTCCGCGTGGGAATGCAGTTCGTGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005970.1\|WP_003370139.1\|1802443_1802956_-\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|180207
NZ_CP005970.1\|WP_003370128.1\|1807960_1809319_-\|flagellar-protein-export-ATPase-FliI	unknown	unknown	gnl\|CDD\|168181
NZ_CP005970.1\|WP_003370126.1\|1809308_1810127_-\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235562
NZ_CP005970.1\|WP_003370135.1\|1805016_1805373_-\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|366732
NZ_CP005970.1\|WP_032609911.1\|1798665_1799451_-\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP005970.1\|WP_003370131.1\|1807073_1807421_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP005970.1\|WP_003436114.1\|1793809_1795138_-\|flagellar-biosynthesis-protein-FlhF	unknown	unknown	gnl\|CDD\|235570
NZ_CP005970.1\|WP_003412410.1\|1801465_1802434_-\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP005970.1\|WP_003436113.1\|1795149_1797279_-\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NZ_CP005970.1\|WP_002554288.1\|1807504_1807954_-\|flagella-biosynthesis-chaperone-FliJ	unknown	unknown	gnl\|CDD\|235563
NZ_CP005970.1\|WP_003370151.1\|1799752_1800505_-\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP005970.1\|WP_003370155.1\|1797528_1798665_-\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|235569
NZ_CP005970.1\|WP_003436100.1\|1811151_1812936_-\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NZ_CP005970.1\|WP_003370145.1\|1800945_1801404_-\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|168189
NZ_CP005970.1\|WP_003436111.1\|1800504_1800945_-\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|225731
NZ_CP005970.1\|WP_002554293.1\|1812951_1813281_-\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|178948
NZ_CP005970.1\|WP_002554277.1\|1799457_1799727_-\|flagellar-biosynthetic-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP005970.1\|WP_003370133.1\|1805407_1807114_-\|fused-response-regulator/phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP005970.1\|WP_003316807.1\|1810142_1811159_-\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NZ_CP005970.1\|WP_058397984.1\|1803504_1804908_-\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|225686

Protein	Function_ID	Function_description	E-value
NZ_CP005970.1\|WP_003370139.1\|1802443_1802956_-\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|180207	PRK05696, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.8353e-77
NZ_CP005970.1\|WP_003370128.1\|1807960_1809319_-\|flagellar-protein-export-ATPase-FliI	gnl\|CDD\|168181	PRK05688, fliI, flagellar protein export ATPase FliI.	0
NZ_CP005970.1\|WP_003370126.1\|1809308_1810127_-\|flagellar-assembly-protein-FliH	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	4.01177e-79
NZ_CP005970.1\|WP_003370135.1\|1805016_1805373_-\|Hpt-domain-containing-protein	gnl\|CDD\|366732	pfam01627, Hpt, Hpt domain. The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072).	1.22003e-11
NZ_CP005970.1\|WP_032609911.1\|1798665_1799451_-\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	8.34411e-77
NZ_CP005970.1\|WP_003370131.1\|1807073_1807421_-\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	2.38181e-18
NZ_CP005970.1\|WP_003436114.1\|1793809_1795138_-\|flagellar-biosynthesis-protein-FlhF	gnl\|CDD\|235570	PRK05703, flhF, flagellar biosynthesis protein FlhF.	0
NZ_CP005970.1\|WP_003412410.1\|1801465_1802434_-\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	2.23392e-166
NZ_CP005970.1\|WP_003436113.1\|1795149_1797279_-\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NZ_CP005970.1\|WP_002554288.1\|1807504_1807954_-\|flagella-biosynthesis-chaperone-FliJ	gnl\|CDD\|235563	PRK05689, fliJ, flagella biosynthesis chaperone FliJ.	2.63728e-50
NZ_CP005970.1\|WP_003370151.1\|1799752_1800505_-\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	1.2582e-124
NZ_CP005970.1\|WP_003370155.1\|1797528_1798665_-\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	0
NZ_CP005970.1\|WP_003436100.1\|1811151_1812936_-\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	0
NZ_CP005970.1\|WP_003370145.1\|1800945_1801404_-\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|168189	PRK05698, fliN, flagellar motor switch protein FliN.	1.2775e-93
NZ_CP005970.1\|WP_003436111.1\|1800504_1800945_-\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|225731	COG3190, FliO, Flagellar biogenesis protein [Cell motility and secretion].	2.86716e-25
NZ_CP005970.1\|WP_002554293.1\|1812951_1813281_-\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|178948	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed.	9.6598e-41
NZ_CP005970.1\|WP_002554277.1\|1799457_1799727_-\|flagellar-biosynthetic-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	2.59222e-30
NZ_CP005970.1\|WP_003370133.1\|1805407_1807114_-\|fused-response-regulator/phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	1.23358e-43
NZ_CP005970.1\|WP_003316807.1\|1810142_1811159_-\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	1.93653e-163
NZ_CP005970.1\|WP_058397984.1\|1803504_1804908_-\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|225686	COG3144, FliK, Flagellar hook-length control protein [Cell motility and secretion].	8.28436e-22

>NZ_CP005970.1|WP_003370139.1|1802443_1802956_-|flagellar-basal-body-associated-protein-FliL
MAQSEEVKDPATTGKGKGKLKLIIIAVVALLLAVGLSVGATWFLMHKSESKEDPAAAAAAANVKPVAVFEPMTPAFVVNFNANGRQRYMQVSITMLGRNAADMEALKVHMPLIRNNLVMLFAAIPFESLASPIGQEMLRQKATASIQEVAQKELGKTVIEQLLFTNFVLQ
>NZ_CP005970.1|WP_003412410.1|1801465_1802434_-|flagellar-motor-switch-protein-FliM
MAVQDLLSQDEIDALLHGVDDGMVQTDNNSEPGSVKSYDLTSQDRIVRGRMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVNFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELGDSLVLRANGVPSFKVKLGSHKGKMALQVIEPIARR
>NZ_CP005970.1|WP_003370145.1|1800945_1801404_-|flagellar-motor-switch-protein-FliN
MADENDTMSAEDQALADEWAAALGEAGDSQADIDALLAADAGNSGSRMAMEEFGSVPKSTGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
>NZ_CP005970.1|WP_003436111.1|1800504_1800945_-|flagellar-biosynthetic-protein-FliO
MRRWLSVLLTLPSLAWAAEPAVQAAPAQVANTVSGGMGGQVVQLLFGLILVIGLIFVLAWLMRRVQRVGPNSNQVIELVSSRALGPRDRLVLVQIGNEQVLLGITPGRITPLHVLKEPVQVPVREQATPEFAQRLMELMGKDKDKK
>NZ_CP005970.1|WP_003370151.1|1799752_1800505_-|flagellar-type-III-secretion-system-pore-protein-FliP
MGALRFLILLLLVMVTPAALAADPLSIQAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKRTDIPTPDAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSFGGV
>NZ_CP005970.1|WP_002554277.1|1799457_1799727_-|flagellar-biosynthetic-protein-FliQ
MTPEVAVDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLVTLIVIGPWLLKIFMEYMLSLYTSIPTLIG
>NZ_CP005970.1|WP_032609911.1|1798665_1799451_-|flagellar-type-III-secretion-system-protein-FliR
MQPMLALTDTQISTWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSALLLIGEQIIIGAGMGLSLQLFFHIFVVAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTMLVTLLFLAMNGHLVVLEILVESFTTMPVGSGLLVNNFWELANGLGWVLASGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQPIATQALQALRDMVRAR
>NZ_CP005970.1|WP_003370155.1|1797528_1798665_-|flagellar-biosynthesis-protein-FlhB
MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSDIALMMSELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFATKSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEPLEQAMIHSLMVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSPEVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVALKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIRQFRAGQGKRPDPLGDIKIPPDLQRDA
>NZ_CP005970.1|WP_003436113.1|1795149_1797279_-|flagellar-biosynthesis-protein-FlhA
MDRSQLLSSARSNITGLGRGQLGVPLLLLVMMAMMMLPMPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFSVFPTILLVATLLRLALNVASTRVVMLHGQDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVITKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQPEAKRRRAEVAQEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGMLVGILQHNMTFADAGRVYTLLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEEMGKLINRQMFASPKALAVSAAVMIVMGLVPGMPHFSFISLGLVAAGGAYLLWKKENQVKVEALAEVQRQQDLLPSPTRVQDAKELGWDDVTPIDIIGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQELGFLMPTVHIRDNLDLAPSAYRLTLMGVILAEAEIYPDRELAINPGQVFGTLNGITARDPAFGLEAVWIEISQRSQAQSLGYTVVDASTVVATHLNQILYKHSHELIGHEEVQQLMQLLAKSSPKLAEELVPGVLSLSSLLNVLQALLAEHVPVRDIRSIAEAIANNAGKSQDTAALVAAVRVGLSRAIVQSIVGVEPELPVITLEPRLEQILLNSLQKAGQGQEEGVLLEPSMAEKLQRSLIEAAQRQEMQGLPVILLVAGPVRAMLSRFGRLAVPNMHVLAYQEIPDNKQVTIVATVGPNG
>NZ_CP005970.1|WP_003436114.1|1793809_1795138_-|flagellar-biosynthesis-protein-FlhF
MQVKRFFAADMRQAMKLVRDELGAEAAIIGNRRIAGGVELTAALDYKLSALAPRVPNMELEDELRKTQSRIVSAQAELNNRSDSDASVNLQLFSGKPVNPADTHIEPTLEEPPRPFAYAPPQAAEPAVGQRAYDSMRSELNGLRELLEVQLGSLAWNQLQGSRPQQANLWRRLQRVGLSGPLSRDLLSMIPEIDEPRQAWRMLLAHLARMIAVPEVEPLEEGGVIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHVDPGQSLVQALEPLLRKRVVLIDTAGLQASDPALRMQLESLAGRGIKSRNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPDDLHIPRRHQLVSRAVSVQMQDEPSEEAMADMFADLYHTPGKRVG
>NZ_CP005970.1|WP_058397984.1|1803504_1804908_-|flagellar-hook-length-control-protein-FliK
MPLATNALLQATTSVTARSGVANNAVKSADSSKDGASSFSNVYAKQAKDTVPARDDAPVKPARDKTAPDKDKVAAGKDKPASDQTNAADKSSVADSGNDLPAKSASADDDAAHSGSKQDDAQASADPALTEGQAVVDPALDPALQAMAAQAPAAPVAKAPPSAEVVTAPVVSALTTTQAAPPVVAEDAFNPDADPLDGLDAVQLALENATAKTQLAAQNAQAANKATPSNAEADPNQNIVNNLSVLSEQLPSEGSSTESSDKSFSGLIGEGLKDVKGAAGDTRVDNFADRLAALSQAAQPARAAAAPAAPLMNQPLAMHQSGWTEGIVDRVMYLSSQNLKTADIKLEPAELGRLDIRINMAPEQQTQVTFMSAHMGVRDALESQMSKLRESFVQQGLGNVDVNVSDQSQQQAQQQAQEQASRAQRSGRGGGMSSSDTSDEIAGIDAAIPVSQPAARVIGTSEIDYYA
>NZ_CP005970.1|WP_003370135.1|1805016_1805373_-|Hpt-domain-containing-protein
MSIHLDYSVLTALQEVMEDEYPTLLDVFLKDSEQRIAQLRLAVGSRNPDFQELSLNAHSFKGSSSNMGALQLSELCRQLEEQARQQQFAGLAELIGTIDSEYMTIRGLFNSERQLFVS
>NZ_CP005970.1|WP_003370133.1|1805407_1807114_-|fused-response-regulator/phosphatase
MQPALKKLCILIADDSASDRLLLSTIVARQGHRVLSAANGVEAVAIFKAESPQLILMDAMMPVMDGFEAARRIKALTGESLVPIIFLTSLTEGEALARCLDAGGDDFMSKPYNPLVLAAKLNAMNRLRVLHETVRQQRDQIARHHEYLLNEQRVAKAVFDQIAHAGCLGASNIRYLQSPYALFNGDLMLAAYTPAGHMQVLLGDFTGHGLPAAVGAMPLAEVFYGMTAKGYGLVEILREMNAKLKRILPVDMFCCATLLCINLPQRQVEVWSGGLPDGYLLRGAQGEHVPLASNHLPLGVLSVDAFDARTDVYPLAPGDRIFLLSDGVLDTSNSQEELFGAQRLRQVLSANREPHLLIEEILVALNEFGGKARDDVSLLEVSAVEAPLENLPVMMYSDSGASSPLDWSASFEFRASTLKRFNPLPYVLQLLLEVHGLRDQGAALHMVLGELYSNALEHGVLGLDSALKHDATGFALYYQQRAERLDRLQSGFIRVSLQVEAVEQGGRLTLSVEDSGQGFDVEKTRTLTPASNELYGRGLHLVCELSREARWSRDGRTACVEFCWEGVA
>NZ_CP005970.1|WP_003370131.1|1807073_1807421_-|STAS-domain-containing-protein
MTVTSERSADGQTLTLFIEGRFDFNSHQAFRAAYEDYPQSLNYVVDLRGTHYLDSSALGMLLLLRDHAGGDKALVRLVNCTPDVLKILAISNFSKLFELSIPSATSPEKTVHSDR
>NZ_CP005970.1|WP_002554288.1|1807504_1807954_-|flagella-biosynthesis-chaperone-FliJ
MAQSRAARLAPVVEMAEAAERTAAQRLGHFQGQVNLANNKLQELDQFRQDYQQQWLQRGSAGVSGQWLLGYQRFLSQLDVAVAQQYKSLEWHKANLDRARSAWQDCYARVEGLRKLVQRYMDEARRLEDKREQKLLDELSQRLPRHEQF
>NZ_CP005970.1|WP_003370128.1|1807960_1809319_-|flagellar-protein-export-ATPase-FliI
MRLERTSFAKRLGSYAESISLPAQPVVEGRLLRMVGLTLEAEGLRAAMGSRCVVINDDSHHPVEVEAEVMGFSGSKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRPLDGRSPIKAEDWVPMDGPTINPLKRDPISQPLDVGIRCINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFARLPKLVERAGNAEAGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPAVVSPEHMARAQHFKQLWSRYQQTRDLISVGAYVAGGDRETDMAIALHPVLVRYQRQGLRDNESIQGSSEALASIFAPAPGG
>NZ_CP005970.1|WP_003370126.1|1809308_1810127_-|flagellar-assembly-protein-FliH
MSSSNKESASDLIRAKDAGLLDIWALPSFDPHVEPEPEPEPELVDEPAEMEEVPLEEVQPLTLEELESIRQEAWNEGFATGEKEGFHSTQLKVRQEAEVVLAAKVASLEQLMGNLLTPIAEQDTQIEKAVILLVEHIARQVIQRELVTDSAQIASVLRDALKLLPMGAQNVRIFINPQDFLLVKAMRERHEESWKIVEDEDLLPGGCRIETEHSRIDASVETRIALAISKMHDQLHEQVTHPAAADLSVDLDASPGNAANVEESDADTLDAP
>NZ_CP005970.1|WP_003316807.1|1810142_1811159_-|flagellar-motor-switch-protein-FliG
MNERAMVAKLSKVEKAAVLLLSLGETDAAQVLRHMGPKEVQKVGVAMAQMRNVHREQVEEVMSEFVDIVGDQTSLGVGSDGYIRKMLTQALGEDKANGLIDRILLGGNTSGLDSLKWMEPRAVADVIRFEHPQIQAIVVAYLDADQAGEVLGHFDHKVRLDIILRVSSLNTVQPAALKELNQILEKQFSGNANTSRTTLGGIKRAADIMNFLDSSIEGSLMDSIREVDEDLSVQIEDLMFVFNNLSDVDDRGIQALLREVSSDVLVLALKGSDEAIKEKIFKNMSKRASELLRDDLEAKGPVRVSDVETAQKEILTIARRMAEAGEIVLGGKGGEEMI
>NZ_CP005970.1|WP_003436100.1|1811151_1812936_-|flagellar-M-ring-protein-FliF
MAEAAADTVPARAGASERKPLFGMSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPSQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSSSGGVPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWDIVKQAVGVIFILILVFGVLRPVLNNITNGKRKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSILLPSPTEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE
>NZ_CP005970.1|WP_002554293.1|1812951_1813281_-|flagellar-hook-basal-body-complex-protein-FliE
MSQGVEFNRLMLDMRAMQMDAMSAPKPVSGAQEAGASSFADMLGQAVNKVAQTQQASSQLANAFEIGKSGVDLTDVMISSQKASVSFQALTQVRNKLVQAYQDIMQMPV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP005970_1	1.1\|1803189\|30\|NZ_CP005970\|CRISPRCasFinder	1803189-1803218	30	NZ_CP030100	Roseovarius sp. AK1035 plasmid unnamed, complete sequence	48454-48483	7	0.767

1. spacer 1.1|1803189|30|NZ_CP005970|CRISPRCasFinder matches to NZ_CP030100 (Roseovarius sp. AK1035 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcgtgtcgcggctgccacgactatcgtcct	CRISPR spacer
cggtgtcgcggctgccccgacgatcgttgc	Protospacer
. ************** **** *****. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

233140 : 284810

Pseudomonas_phage(59.18%)

tRNA,protease,tail,integrase,portal,capsid,head,terminase

attL 240543:240593|attR 285834:285884

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003315564.1\|233140_235063_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.0e-124	37.5
WP_170846037.1\|235062_235614_+	translation initiation factor IF-3	A0A2I7S9Q1	Vibrio_phage	9.2e-14	37.3
WP_002553160.1\|235674_235869_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_002553161.1\|235898_236255_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_003367019.1\|236359_237376_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	8.4e-29	39.3
WP_060707598.1\|237403_239782_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_002553164.1\|239785_240088_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.8e-11	38.9
WP_003315559.1\|240068_240425_+	MerR family transcriptional regulator	NA	NA	NA	NA
240543:240593	attL	NA	NA	NA	NA
WP_060707599.1\|240678_241791_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4JIT5	Pseudomonas_phage	2.3e-32	31.4
WP_005753573.1\|241790_242003_-	hypothetical protein	NA	NA	NA	NA
WP_060708906.1\|242040_242538_-	hypothetical protein	A0A1B0VM52	Pseudomonas_phage	1.4e-21	46.3
WP_060707600.1\|242661_242874_+	hypothetical protein	NA	NA	NA	NA
WP_060707601.1\|243300_243840_-	hypothetical protein	I6NP82	Burkholderia_phage	2.1e-18	35.5
WP_060707602.1\|244116_244689_+	hypothetical protein	NA	NA	NA	NA
WP_060707603.1\|244692_245646_-	phosphoadenosine phosphosulfate reductase family protein	B7SYG0	Stenotrophomonas_phage	2.4e-78	50.8
WP_060708907.1\|245856_246486_-	hypothetical protein	A0A2H4JC30	uncultured_Caudovirales_phage	3.1e-42	46.0
WP_144423381.1\|246595_246796_+	hypothetical protein	NA	NA	NA	NA
WP_060707605.1\|246769_247411_-	hypothetical protein	NA	NA	NA	NA
WP_060707606.1\|247407_247749_-	hypothetical protein	NA	NA	NA	NA
WP_024420196.1\|248303_248705_-	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	1.2e-18	61.7
WP_060707607.1\|249306_249804_-	hypothetical protein	A0A1B0VMC8	Pseudomonas_phage	4.1e-45	60.0
WP_080376659.1\|249907_250603_-	helix-turn-helix domain-containing protein	A5VW98	Enterobacteria_phage	4.0e-38	47.4
WP_020304837.1\|250686_250926_+	hypothetical protein	A0A2H4J0V8	uncultured_Caudovirales_phage	5.0e-25	73.4
WP_060707608.1\|251166_251964_+	hypothetical protein	A0A2H4J580	uncultured_Caudovirales_phage	8.5e-69	53.7
WP_060707609.1\|251953_252748_+	ATP-binding protein	A0A2H4J3E5	uncultured_Caudovirales_phage	2.5e-89	60.5
WP_055005117.1\|252749_252944_+	hypothetical protein	NA	NA	NA	NA
WP_055005118.1\|252940_253237_+	DUF1364 domain-containing protein	A0A2D1GNQ4	Pseudomonas_phage	4.7e-41	83.3
WP_024645822.1\|253233_253665_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	2.4e-54	74.1
WP_055005119.1\|253661_254942_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	2.6e-221	86.9
WP_060707610.1\|254958_255177_+	hypothetical protein	A0A2D1GNM0	Pseudomonas_phage	2.8e-22	69.0
WP_060707611.1\|255173_255419_+	hypothetical protein	NA	NA	NA	NA
WP_060707612.1\|255415_255772_+	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	1.1e-36	67.8
WP_016980598.1\|255774_256161_+	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	1.7e-35	55.9
WP_060707613.1\|256325_256610_+	hypothetical protein	NA	NA	NA	NA
WP_060707614.1\|256727_257525_+	hypothetical protein	NA	NA	NA	NA
WP_058877183.1\|257580_257952_+	hypothetical protein	A0A059VK40	Pseudomonas_phage	8.9e-45	87.0
WP_024650633.1\|257951_258290_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	3.1e-28	74.1
WP_032662025.1\|258345_258576_+	hypothetical protein	K4F774	Cronobacter_phage	2.7e-12	50.7
WP_154232692.1\|258592_258733_+	hypothetical protein	NA	NA	NA	NA
WP_060707615.1\|258736_259087_+	hypothetical protein	NA	NA	NA	NA
WP_057443346.1\|259137_259317_+	hypothetical protein	NA	NA	NA	NA
WP_060707616.1\|259307_259703_+	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	3.7e-57	75.4
WP_010436441.1\|259871_260357_+\|terminase	phage terminase small subunit P27 family	A0A2D1GNP3	Pseudomonas_phage	3.6e-78	90.1
WP_060707617.1\|260357_262091_+\|terminase	terminase large subunit	A0A2D1GNU5	Pseudomonas_phage	3.2e-312	90.4
WP_162836997.1\|262087_262252_+	hypothetical protein	Q9MCB1	Pseudomonas_phage	2.5e-07	62.3
WP_060707618.1\|262244_263555_+\|portal	phage portal protein	A0A1V0E8B9	Vibrio_phage	1.1e-137	56.3
WP_054986379.1\|263558_264401_+\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	2.1e-89	62.8
WP_060708909.1\|264589_265798_+\|capsid	phage major capsid protein	H2BDB0	Pseudomonas_virus	1.8e-131	63.9
WP_060707619.1\|265849_266266_+	hypothetical protein	NA	NA	NA	NA
WP_060707620.1\|266269_266743_+	hypothetical protein	G3ENA1	Psychrobacter_phage	3.5e-14	39.6
WP_060707621.1\|266742_267081_+\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	1.4e-28	60.0
WP_003370677.1\|267073_267559_+	HK97 gp10 family phage protein	A0A0U3TGT7	Pseudomonas_phage	2.3e-56	67.9
WP_046832800.1\|267558_267927_+	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	1.1e-39	65.8
WP_060707622.1\|267990_268491_+\|tail	phage tail protein	H2BDC0	Pseudomonas_virus	1.9e-58	67.1
WP_054986373.1\|268500_268938_+\|tail	phage tail assembly chaperone family protein, TAC	Q9MCA4	Pseudomonas_phage	5.6e-38	69.2
WP_164989735.1\|268994_269141_+	hypothetical protein	Q9MCA3	Pseudomonas_phage	9.5e-11	68.8
WP_060707623.1\|269188_271762_+\|tail	phage tail tape measure protein	A0A2H4PI09	Pseudomonas_phage	3.5e-156	45.9
WP_060707624.1\|271761_272106_+\|tail	phage tail protein	A0A2D1GNJ1	Pseudomonas_phage	5.2e-31	53.5
WP_154598118.1\|272141_272300_+	hypothetical protein	NA	NA	NA	NA
WP_060707625.1\|272296_272482_-	hypothetical protein	NA	NA	NA	NA
WP_060707626.1\|272691_273390_+\|tail	phage minor tail protein L	A0A2D1GNF3	Pseudomonas_phage	6.9e-107	80.1
WP_060707627.1\|273392_274175_+\|tail	phage tail protein	A0A2D1GNP8	Pseudomonas_phage	2.3e-119	73.8
WP_060707628.1\|274171_274759_+\|tail	tail assembly protein	A0A2D1GNM2	Pseudomonas_phage	3.8e-74	73.1
WP_060707629.1\|274813_278566_+\|tail	phage tail protein	A0A2D1GNE3	Pseudomonas_phage	0.0e+00	60.1
WP_054999308.1\|278574_278883_+	hypothetical protein	NA	NA	NA	NA
WP_060707630.1\|278882_279569_+	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	1.1e-37	38.6
WP_060707631.1\|279592_281023_+\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
WP_060707632.1\|281087_281693_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	2.3e-66	69.0
WP_060707633.1\|281689_282220_+	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	6.3e-60	79.6
WP_060707634.1\|282508_283303_+	DNA adenine methylase	C7BGE1	Burkholderia_phage	1.3e-101	66.5
WP_032635147.1\|283389_283569_+	hypothetical protein	NA	NA	NA	NA
WP_060707636.1\|283565_284810_+	SGNH/GDSL hydrolase family protein	A0A059VA35	Pseudomonas_phage	4.5e-210	88.2
285834:285884	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1484925 : 1495381

uncultured_Caudovirales_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003317937.1\|1484925_1485597_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.5e-106	92.4
WP_044308814.1\|1485949_1486858_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_060707953.1\|1486843_1487623_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_003371790.1\|1487638_1488940_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.4e-60	36.2
WP_003371788.1\|1489174_1489567_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.3e-57	82.3
WP_060707954.1\|1489568_1489931_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.1e-36	61.7
WP_060707955.1\|1489930_1490230_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	7.2e-29	61.6
WP_003317943.1\|1490226_1490562_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.2e-43	78.4
WP_060707956.1\|1490558_1491560_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	4.0e-164	83.5
WP_060707957.1\|1491656_1492655_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003436001.1\|1492705_1494100_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003436002.1\|1494100_1495381_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.3e-97	45.8

DBSCAN-SWA_3

2100402 : 2109998

Burkholderia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003434349.1\|2100402_2103315_+	ribonucleoside-diphosphate reductase subunit alpha	A0A2H4P767	Pseudomonas_phage	8.8e-180	45.9
WP_002554639.1\|2103540_2104788_+	ribonucleotide-diphosphate reductase subunit beta	U5Q1G6	Bacillus_phage	1.1e-30	27.4
WP_144423394.1\|2105214_2105694_-	hypothetical protein	NA	NA	NA	NA
WP_060708088.1\|2105696_2106764_-	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	6.3e-19	27.8
WP_060708089.1\|2106820_2108077_-	restriction endonuclease	E5E3X4	Burkholderia_phage	8.4e-87	44.1
WP_060708090.1\|2108037_2108541_-	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	1.1e-45	57.1
WP_193392537.1\|2108594_2109998_-	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	1.4e-106	49.9

DBSCAN-SWA_4

3097001 : 3165691

Pseudomonas_phage(50.0%)

lysis,bacteriocin,tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044309503.1\|3097001_3098213_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_060708340.1\|3098414_3099839_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	4.2e-18	44.7
WP_044309502.1\|3099842_3100937_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002551953.1\|3100999_3101350_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
WP_003433179.1\|3101449_3102484_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003316309.1\|3102617_3103046_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_058416467.1\|3103144_3104059_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_003372679.1\|3104116_3104893_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_058396429.1\|3104996_3105335_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003433185.1\|3105456_3106104_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003316303.1\|3106173_3106968_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003372688.1\|3107210_3107633_-	OsmC family protein	NA	NA	NA	NA
WP_003433187.1\|3107835_3108480_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_003372692.1\|3108491_3109187_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_003372693.1\|3109221_3110058_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	9.9e-68	56.2
WP_003372695.1\|3110054_3111104_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.4e-111	58.3
WP_003433192.1\|3111125_3111725_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.6e-75	65.3
WP_003372700.1\|3112134_3112647_-\|lysis	lysis protein	A0A2H4JBH9	uncultured_Caudovirales_phage	6.7e-27	49.4
WP_060708341.1\|3112643_3113189_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	6.9e-70	73.3
WP_003372704.1\|3113430_3113928_-\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_003433195.1\|3114203_3115265_-\|tail	tail fiber assembly domain protein	NA	NA	NA	NA
WP_032609446.1\|3115520_3116087_-\|tail	tail fiber assembly protein	B5TK80	Pseudomonas_phage	3.9e-44	45.6
WP_003433196.1\|3116094_3117555_-	hypothetical protein	B5TK79	Pseudomonas_phage	2.0e-84	39.6
WP_024662983.1\|3117565_3118165_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	6.4e-85	72.4
WP_044343678.1\|3118152_3119193_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	7.1e-132	70.1
WP_003394886.1\|3119182_3119581_-	phage GP46 family protein	B5TK74	Pseudomonas_phage	3.4e-42	62.9
WP_060708342.1\|3119577_3120090_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	6.2e-65	73.8
WP_046269563.1\|3120086_3121214_-\|plate	baseplate protein	B5TK72	Pseudomonas_phage	7.2e-114	60.8
WP_003372725.1\|3121217_3122642_-	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	2.7e-105	44.1
WP_060708343.1\|3122638_3124783_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	5.6e-75	40.2
WP_003316280.1\|3124913_3125210_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.3e-34	76.0
WP_003372729.1\|3125206_3125554_-\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	5.6e-41	69.6
WP_003433200.1\|3125614_3127111_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	6.4e-235	80.5
WP_003419716.1\|3127129_3127318_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.1e-14	73.5
WP_060708344.1\|3127314_3127905_-	hypothetical protein	B5TK65	Pseudomonas_phage	3.1e-52	52.0
WP_003372736.1\|3127951_3128290_-	hypothetical protein	A0A059VJW1	Pseudomonas_phage	9.0e-20	59.2
WP_003411734.1\|3128270_3128660_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_060708345.1\|3128833_3129682_-\|bacteriocin	putidacin L1 family lectin-like bacteriocin	NA	NA	NA	NA
WP_060708346.1\|3129691_3129877_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	5.8e-13	89.5
WP_003433209.1\|3130149_3130593_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	6.0e-24	45.8
WP_003372744.1\|3130782_3131394_+	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	2.0e-49	49.2
WP_002551908.1\|3131546_3131795_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003316268.1\|3131916_3132159_+	pyocin activator PrtN family protein	A0A2H4J8B4	uncultured_Caudovirales_phage	1.9e-16	51.2
WP_060708950.1\|3132264_3134187_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_003433217.1\|3134399_3135881_-	anthranilate synthase component I	NA	NA	NA	NA
WP_003433219.1\|3135951_3136770_-	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003304938.1\|3136766_3137441_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003394916.1\|3137567_3138389_-	ABC transporter permease	NA	NA	NA	NA
WP_060708347.1\|3138400_3139648_-	ABC transporter permease	NA	NA	NA	NA
WP_003341141.1\|3139725_3140760_-	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003372763.1\|3140842_3141967_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	2.3e-27	31.4
WP_003341145.1\|3142483_3143113_-	response regulator transcription factor	NA	NA	NA	NA
WP_060708349.1\|3143109_3145158_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_060708350.1\|3145236_3146235_+	alpha/beta hydrolase family protein	NA	NA	NA	NA
WP_003433228.1\|3146243_3147011_-	TerB family tellurite resistance protein	NA	NA	NA	NA
WP_060708951.1\|3147011_3147683_-	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_060708351.1\|3147782_3148805_-	phosphotransferase	NA	NA	NA	NA
WP_060708352.1\|3148934_3151715_+	LPS-assembly protein LptD	NA	NA	NA	NA
WP_003433245.1\|3151695_3153018_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_003433247.1\|3153014_3154004_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003433248.1\|3154000_3154807_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003316251.1\|3154922_3155303_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003433250.1\|3155302_3156178_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A291L9W7	Bordetella_phage	1.3e-06	43.8
WP_003372784.1\|3156201_3156522_+	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003372786.1\|3156809_3158732_+	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003433255.1\|3158853_3160125_+	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.9e-10	40.4
WP_003433256.1\|3160121_3161684_+	SpoVR family protein	NA	NA	NA	NA
WP_060708353.1\|3161781_3163011_+	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	2.3e-81	47.1
WP_003351503.1\|3163129_3163654_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_060708354.1\|3163644_3163998_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003433261.1\|3164072_3164642_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003372796.1\|3164665_3165691_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.1e-104	56.1

DBSCAN-SWA_5

3233664 : 3294766

Bacillus_virus(14.29%)

tRNA,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060708372.1\|3233664_3234612_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_170846044.1\|3234676_3235525_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_044309129.1\|3235521_3236700_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-25	36.4
WP_003432565.1\|3236955_3238209_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.0e-102	54.0
WP_003411874.1\|3238226_3239477_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_003372476.1\|3239492_3239789_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_060708373.1\|3239785_3242806_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_058396378.1\|3242856_3243489_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_044309126.1\|3243664_3244522_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_058416059.1\|3244571_3245771_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.2e-12	27.7
WP_060708375.1\|3247050_3252879_-	hypothetical protein	NA	NA	NA	NA
WP_003372491.1\|3253100_3253664_+	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_060708376.1\|3253643_3254711_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	2.4e-26	41.6
WP_003432549.1\|3254761_3255655_-	acyltransferase	NA	NA	NA	NA
WP_003432546.1\|3255848_3256352_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_024661874.1\|3256861_3257491_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_002555613.1\|3257560_3257743_-	hypothetical protein	NA	NA	NA	NA
WP_003372498.1\|3257739_3258873_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_003372499.1\|3258994_3259978_-	FecR family protein	NA	NA	NA	NA
WP_003372500.1\|3259974_3260493_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_024661877.1\|3260780_3262487_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	2.9e-50	29.2
WP_058396369.1\|3262627_3264100_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_002555619.1\|3264203_3264797_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_060708377.1\|3265127_3266516_-	DUF3482 domain-containing protein	A0A0R6PFW5	Moraxella_phage	1.3e-53	39.8
WP_046720099.1\|3266508_3267888_-	DUF2868 domain-containing protein	NA	NA	NA	NA
WP_003432534.1\|3267997_3268510_+	dihydrofolate reductase	F8SJN4	Pseudomonas_phage	1.6e-28	39.8
WP_024661887.1\|3268700_3269759_+	hypothetical protein	NA	NA	NA	NA
WP_003372513.1\|3269800_3270535_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_003304387.1\|3270545_3271340_-	thiazole synthase	NA	NA	NA	NA
WP_003372514.1\|3271391_3271592_-	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_003372515.1\|3271706_3272087_-	DUF423 domain-containing protein	NA	NA	NA	NA
WP_024661885.1\|3272167_3272878_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
WP_002555629.1\|3273012_3273867_-	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	3.6e-41	38.5
WP_060708378.1\|3273985_3275020_-	ABC transporter permease	NA	NA	NA	NA
WP_002555631.1\|3275016_3275688_-	cell division ATP-binding protein FtsE	W6JKT0	Anomala_cuprea_entomopoxvirus	3.0e-14	25.8
WP_058396367.1\|3275684_3277190_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
WP_003372526.1\|3277446_3278799_+	insulinase family protein	G3MBJ8	Bacillus_virus	2.3e-21	25.3
WP_058416052.1\|3278795_3280286_+	insulinase family protein	NA	NA	NA	NA
WP_046720104.1\|3280285_3280876_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_024663703.1\|3281160_3282195_+	hydrolase	NA	NA	NA	NA
WP_060708379.1\|3282202_3283060_-	sulfurtransferase	NA	NA	NA	NA
WP_003432509.1\|3283114_3283777_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003348749.1\|3284144_3284624_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	4.4e-28	43.0
WP_054081730.1\|3284722_3284974_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.2e-21	61.4
WP_003372544.1\|3284982_3285321_-	hypothetical protein	NA	NA	NA	NA
WP_003372546.1\|3285418_3286231_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	A0A127AWE5	Bacillus_phage	9.1e-18	27.8
WP_170846043.1\|3286276_3287089_-	HDOD domain-containing protein	NA	NA	NA	NA
WP_032612331.1\|3287326_3287866_+	type 1 glutamine amidotransferase	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	3.0e-17	34.3
WP_003372549.1\|3287951_3289148_+	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_003372560.1\|3289985_3290732_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_003432507.1\|3290831_3291872_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_003432506.1\|3291998_3293441_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_058397143.1\|3293440_3294766_+\|protease	Zn-dependent protease	NA	NA	NA	NA

DBSCAN-SWA_6

3450461 : 3512902

Pseudomonas_phage(16.67%)

plate,integrase,protease

attL 3440372:3440388|attR 3504120:3504136

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3440372:3440388	attL	NA	NA	NA	NA
WP_080376741.1\|3450461_3451493_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_060708408.1\|3451725_3453411_+	ATP-binding protein	NA	NA	NA	NA
WP_060708409.1\|3453993_3454311_+	DUF4258 domain-containing protein	A0A1B0VNA4	Pseudomonas_phage	3.2e-43	77.7
WP_003372222.1\|3454307_3454751_+	transcriptional regulator	A0A1B0VMC9	Pseudomonas_phage	1.5e-62	81.4
WP_003318312.1\|3454931_3455210_+	lipoprotein	NA	NA	NA	NA
WP_060708410.1\|3455521_3456868_+	PAS domain-containing protein	NA	NA	NA	NA
WP_003342242.1\|3457011_3457497_+	hypothetical protein	NA	NA	NA	NA
WP_042931086.1\|3457554_3458946_-	GABA permease	NA	NA	NA	NA
WP_003318317.1\|3459471_3460245_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-18	31.6
WP_002555783.1\|3460258_3461023_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003318319.1\|3461089_3461785_+	ABC transporter permease	NA	NA	NA	NA
WP_060708411.1\|3461781_3462471_+	ABC transporter permease	NA	NA	NA	NA
WP_060708412.1\|3462472_3463744_+	methyltransferase	NA	NA	NA	NA
WP_003434742.1\|3464039_3464366_-	hypothetical protein	NA	NA	NA	NA
WP_058416219.1\|3464791_3465808_-	J domain-containing protein	F2Y2Y5	Organic_Lake_phycodnavirus	4.8e-08	47.5
WP_003372246.1\|3466772_3466919_+	hypothetical protein	NA	NA	NA	NA
WP_003372249.1\|3467637_3468552_+	hypothetical protein	NA	NA	NA	NA
WP_003372252.1\|3468561_3469290_+	hypothetical protein	NA	NA	NA	NA
WP_003372254.1\|3469615_3469939_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	1.4e-14	47.6
WP_058416218.1\|3469935_3470283_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_058416217.1\|3470372_3471017_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_054081360.1\|3471116_3471458_-	hypothetical protein	NA	NA	NA	NA
WP_003372262.1\|3471647_3472070_+	DUF1493 family protein	NA	NA	NA	NA
WP_060708413.1\|3472378_3473116_+	hypothetical protein	NA	NA	NA	NA
WP_060708414.1\|3473126_3473600_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060708415.1\|3473682_3474252_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003372272.1\|3474412_3474907_+	hypothetical protein	NA	NA	NA	NA
WP_044310323.1\|3474944_3476219_-	OprD family porin	NA	NA	NA	NA
WP_054081364.1\|3476866_3477973_-	agmatine deiminase	A7IVE6	Paramecium_bursaria_Chlorella_virus	5.4e-106	50.6
WP_003372277.1\|3477978_3478857_-	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	2.7e-76	48.5
WP_060708416.1\|3479430_3482343_-	aminotransferase	A0A1V0SKB7	Klosneuvirus	7.8e-19	23.9
WP_003372283.1\|3482583_3483666_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.2e-97	53.0
WP_024661828.1\|3483746_3484292_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.0e-52	58.0
WP_032609702.1\|3484456_3486265_+	sensor histidine kinase	NA	NA	NA	NA
WP_003372289.1\|3486261_3487647_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_060708417.1\|3487633_3488107_+	YiiD C-terminal domain-containing protein	NA	NA	NA	NA
WP_003434802.1\|3488419_3489262_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_003372295.1\|3489258_3489825_-	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_003434805.1\|3489922_3490600_+	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_003372300.1\|3490641_3491523_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003372302.1\|3491626_3492463_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_003434810.1\|3492459_3494796_+	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_003372307.1\|3495005_3495446_+	hypothetical protein	NA	NA	NA	NA
WP_060708418.1\|3495536_3497471_-	RecQ family ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	1.7e-54	40.5
WP_058416214.1\|3497617_3498439_+	hypothetical protein	NA	NA	NA	NA
WP_024662928.1\|3499068_3501240_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_060708420.1\|3501937_3502687_+	hypothetical protein	NA	NA	NA	NA
WP_003318241.1\|3502756_3503290_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003434824.1\|3503304_3504807_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
3504120:3504136	attR	NA	NA	NA	NA
WP_003420335.1\|3504832_3505315_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003434826.1\|3505314_3507147_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_024640475.1\|3507110_3508181_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_060708421.1\|3508177_3510781_+	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	2.2e-89	30.6
WP_004415260.1\|3510806_3511562_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_003434831.1\|3511558_3512902_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage