CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010552	Candidatus Thioglobus autotrophicus strain EF1 chromosome, complete genome	2 crisprs	DEDDh,DinG,cas3,csa3,cas6	0	1	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010552_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010552_1

106882-106986

Orphan

Consensus_repeat	Method
AATAAACAGCCTGCTAAGCAACAAAATAATACCAATCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010552_1

>merge|NZ_CP010552|1|106882-106986|CRISPRCasFinder
AATAAACAGCCTGCTAAGCAACAAAATAATACCAATCAACAACAAGGTCAGGCAAAAAAGCAAGGAAATAAACAGCCTGCTAAGCAACAAAATAACACCAATCAA

>NZ_CP010552|1|1|106882-106986|CRISPRCasFinder
AATAAACAGCCTGCTAAGCAACAAAATAATACCAATCAA	CAACAAGGTCAGGCAAAAAAGCAAGGA
AATAAACAGCCTGCTAAGCAACAAAATAACACCAATCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010552.1\|WP_053950801.1\|114667_114958_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP010552.1\|WP_053950791.1\|102883_103978_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|224481
NZ_CP010552.1\|WP_053950800.1\|113959_114655_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP010552.1\|WP_053950789.1\|99574_102088_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NZ_CP010552.1\|WP_053950794.1\|108608_109835_-\|5-demethoxyubiquinol-8-5-hydroxylase-UbiM	unknown	unknown	gnl\|CDD\|236385
NZ_CP010552.1\|WP_053950790.1\|102075_102870_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP010552.1\|WP_053950787.1\|98152_99121_-\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NZ_CP010552.1\|WP_053950792.1\|103994_104714_+\|pteridine-reductase	unknown	unknown	gnl\|CDD\|181668
NZ_CP010552.1\|WP_053950796.1\|110301_111345_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP010552.1\|WP_053950783.1\|93754_94231_-\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NZ_CP010552.1\|WP_053950786.1\|96948_98166_-\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|223918
NZ_CP010552.1\|WP_053950795.1\|109890_110307_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP010552.1\|WP_053950799.1\|112810_113740_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176191
NZ_CP010552.1\|WP_053950785.1\|96031_96943_-\|UDP-3-O-acyl-N-acetylglucosamine-deacetylase	unknown	unknown	gnl\|CDD\|237294
NZ_CP010552.1\|WP_053950798.1\|111839_112814_+\|YhdH/YhfP-family-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176183
NZ_CP010552.1\|WP_053950793.1\|107178_107982_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP010552.1\|WP_053950788.1\|99104_99575_-\|CinA-family-protein	unknown	unknown	gnl\|CDD\|224463
NZ_CP010552.1\|WP_053952171.1\|107970_108603_-\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
NZ_CP010552.1\|WP_053950797.1\|111394_111727_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP010552.1\|WP_053950784.1\|94233_95967_-\|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|180780

Protein	Function_ID	Function_description	E-value
NZ_CP010552.1\|WP_053950801.1\|114667_114958_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	9.89688e-20
NZ_CP010552.1\|WP_053950791.1\|102883_103978_-\|SAM-dependent-methyltransferase	gnl\|CDD\|224481	COG1565, COG1565, Uncharacterized conserved protein [Function unknown].	1.74015e-100
NZ_CP010552.1\|WP_053950800.1\|113959_114655_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	8.80259e-86
NZ_CP010552.1\|WP_053950789.1\|99574_102088_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NZ_CP010552.1\|WP_053950794.1\|108608_109835_-\|5-demethoxyubiquinol-8-5-hydroxylase-UbiM	gnl\|CDD\|236385	PRK09126, PRK09126, FAD-dependent hydroxylase.	0
NZ_CP010552.1\|WP_053950790.1\|102075_102870_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	2.64099e-90
NZ_CP010552.1\|WP_053950787.1\|98152_99121_-\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NZ_CP010552.1\|WP_053950792.1\|103994_104714_+\|pteridine-reductase	gnl\|CDD\|181668	PRK09135, PRK09135, pteridine reductase; Provisional.	8.67207e-113
NZ_CP010552.1\|WP_053950796.1\|110301_111345_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	5.99178e-32
NZ_CP010552.1\|WP_053950783.1\|93754_94231_-\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	1.29663e-74
NZ_CP010552.1\|WP_053950786.1\|96948_98166_-\|cell-division-protein-FtsA	gnl\|CDD\|223918	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning].	2.41344e-69
NZ_CP010552.1\|WP_053950795.1\|109890_110307_+\|hypothetical-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	1.21169e-14
NZ_CP010552.1\|WP_053950799.1\|112810_113740_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	4.63724e-145
NZ_CP010552.1\|WP_053950785.1\|96031_96943_-\|UDP-3-O-acyl-N-acetylglucosamine-deacetylase	gnl\|CDD\|237294	PRK13186, lpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase.	1.07571e-164
NZ_CP010552.1\|WP_053950798.1\|111839_112814_+\|YhdH/YhfP-family-quinone-oxidoreductase	gnl\|CDD\|176183	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	2.06353e-170
NZ_CP010552.1\|WP_053950793.1\|107178_107982_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	8.42942e-114
NZ_CP010552.1\|WP_053950788.1\|99104_99575_-\|CinA-family-protein	gnl\|CDD\|224463	COG1546, CinA, Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only].	8.79782e-66
NZ_CP010552.1\|WP_053952171.1\|107970_108603_-\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	5.9286e-114
NZ_CP010552.1\|WP_053950797.1\|111394_111727_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	9.5683e-41
NZ_CP010552.1\|WP_053950784.1\|94233_95967_-\|biosynthetic-type-acetolactate-synthase-large-subunit	gnl\|CDD\|180780	PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit; Validated.	0

>NZ_CP010552.1|WP_053950792.1|103994_104714_+|pteridine-reductase
MKTALVTGGAHRIGQQICRTLHEANFSVIIHYNTSSLAAQNLADELNLIRANSAEIIQAELSNTNDIEQLCQSIESLDVLVNNASVFYPTPIDELTLTDYQNIMNTNLMGPLFLSSTLKGKLSKNQGSIVNIVDIHGDRPLKNHAIYNISKAAIAMMTKTLAKELAPNICVNGVSPGSILWPENEAELNQSQKQSMLNKIALNKQGSAQDIAKTVLFLAQSNYITGQIIAVDGGRSLNQ
>NZ_CP010552.1|WP_053950791.1|102883_103978_-|SAM-dependent-methyltransferase
MKLTEVIKNTIIQNQAPIGFDEFMELALYYPQLGYYRSGSEKFGEKGDFITAPETSDLFGFCLAKQCAQVLNGDNDILEFGAGSGVLAAQVLFELGRLECLPKKYYILELSRELQHRQQQTLAKALPELLERVVWLDKLPEDFKGVVIANEVLDAMPAKRVTQKEGVFYELCVDITKDQLSWTPSDTIFKNPKIKLPGDVDEGYTTEINPRAMAWVDSLYDVLDEALVLLIDYGMHRDEYFHPQRLDGTLRCYYQHKASDNPFVHIGKQDITTSVNFSDIADQAKSSGFQVAGYATQALFLIALGIDNYLLAEEDENRRITLAQQIKQLVLPSAMGESFKVLALSKSTHVKLIGFKEQDLSHKL
>NZ_CP010552.1|WP_053950790.1|102075_102870_-|undecaprenyl-diphosphate-phosphatase
MDFIQTIVLSLVQGLSEFLPISSSAHLILVPKLTDWPDQGLAFDVVVHLGTLSAIVFYYRAIIRILIQDFFYSVVKIQTIGQSKLAWGVLLGTIPVGLAGLIFKDFIELNLRSTEIIAYSTLVFGLLLGFSSWVNAKNQQPRSEINWQDVGFIGVMQALALIPGTSRSGITITAGLLIGLSKNMSTQFAFLLSIPVITLSALLMLLELYQQPQLVDWSMLAVGFMVAAISAYLTVVFFIKLLDTIGLVPFVIYRIILGVLLLAI
>NZ_CP010552.1|WP_053950789.1|99574_102088_-|aminopeptidase-N
MSNLAPQPIYRKDYKPSNYLIHTTDLSFDLRDDETLVSSKIHFYKNPKYQAGDNSLFLDGIDLELISLVIDGERVDYELSDKGMQLRHLKDEFVLEIVNRIHPELNTSLNGLYQSSGNFCTQCEAHGFRQITYYLDRPDVLSVFTTHITADKRKYPVLLSNGNLLTASSGQATWHDPTSKPCYLFALVAGDFAVLEDNYTTLSGREVALKIYVEAHNISKTQFAMDSLKRSFAWDESRFNLEYDLDIYMIVAVDDFNMGAMENKGLNIFNSTYVLAEPKTATDKDFINVEAVIGHEYFHNWTGNRVTCKDWFQLSLKEGLTVFRDQEFTSDLHSRSIKRIEDVNALRTFQFAEDAGPMQHPVRPESYIEMNNFYTLTIYEKGAEVIRMIHSFLGETGFQKGMKLYFERHDGDAVTIDDFVSSMSDANEFDFSQFMTWYSQPGTPTVSIKTNYDEISQRFHVEVEQNKGHDYFLPLNYALLDDQGHALKEGMLTIKQHKESFVFEQIKSKPTPSWLRGFCAPIHLLTDLTFEQKIFLVGHDSDAYVVWDSAQQIWLSLILTPNKAHEQLFFNALEKLIQTTPDKSLVSEVLTLPSERFLHQQVAMIDVFDINQKREQMAHKVLRRFEALLLETYNSLNNNQAYQLTSSAVGGRSLKNTCLYYLSKDKDSGLALTQFEQANCMTDQIAAFNALITNNSAHKDQAIASFYQTFKQDVQVMDKFFAAQSSSITSDIGCIKSLMQHELFSFNTPNRLRSVVGGFTQNYINFHHQAGYEFFTDIILKLNQSNPQIGARLVSVYNHWKRFTPELKQLQKQQLERIMQSDDLSNDIFEIVQAALK
>NZ_CP010552.1|WP_053950788.1|99104_99575_-|CinA-family-protein
MSQLKQLTELLLAQKLTITAAESCTGGALCSLLTSQSGASVYFDRGFITYTNQAKMDMLGVMQATLEEFGAVSEQTAKQMAKGAINQAKTDISVAITGIAGPEGGSQEKPVGMVCFGFCVFGECFTTTQNFTGDRLQVVKASIDFVLTTLIHELSS
>NZ_CP010552.1|WP_053950787.1|98152_99121_-|tRNA-dihydrouridine(20/20a)-synthase-DusA
MNSQVKFSVAPMMDWTDRHCRYFYRLMSKNTQLWTEMVTAKAIIHGDKNRLLDYDAQEHPLVLQLGGSDPKEMAVAAKVGQDWGYDEININVGCPSDRVQSGSFGACLMQTPETVAHCIESMGAVIDIPLSVKSRIGVDDMESYDELSHFIETVHKAGCDNFVIHARKAWLKGLSPKENRTVPPLNYDWVYRVKQDFPTLTIGINGGITTLDEASEHLDHVDSVMLGRAAYHQPYLLAGVDQQIYQSERSVVSREQVLLEFIEYIKQQQTNAVPVRSMTRHILGLYHAQPNAKKFKRLLSGKTVEIAHLYQWLEQGEVLVGS
>NZ_CP010552.1|WP_053950786.1|96948_98166_-|cell-division-protein-FtsA
MSDLDFFASIDVGSSKIVILIADIEDNKFHVLGHATGDSAGVKNGVIVDVESAAQAIRQVIDKVNKNCKHKPKFIDINVSDLHLSSRNQNRPISFNGKTKTITQADVLQAIQNSSAGAMATNKKNLEPIVNNFTIDEQVETFPIGMEAAVLGAQVHLISVSNQAINNISHSLLASDLGVDKIILDSIASSAVCISQDDKDKGVCLLDIGAGVSNLSVFSKGGVVFNQVFDMGGNAITDRIAQAYDTSFDEAERLKIAYGTLQLDSLIKDRLVKFEQIDSTEDRYLSLRELISVIEKSYKEICTLVKRSLKNEKLDRSIKSGFVVIGGASKIKHFEGFLLKEFRARTRIAKINRALVSGDEKILTNTSYFSALGLLTCNAPKSYLQEPEQVQKGGLLGTMQELFKL
>NZ_CP010552.1|WP_053950785.1|96031_96943_-|UDP-3-O-acyl-N-acetylglucosamine-deacetylase
MIKQRTIKKTVKARGIGIHSGSVVNMTLIPAGIDHGVVFRRMDVGGKLVRAHNAFVNEVVLSTGLENQGVKVSTVEHLMSAFSALGIDNILVELDSFEVPIMDGSSAPFVFLVQSAGIEEQEEHKRFFVIHETVRVENGDSWAQVSKHDGFKVSIEIDFDHKKVKESGQQLSIDFSQQSYLKEISRARTFGYMKDVEMMQRQNLALGASMNNAIALSDDDVLNEDGMRYQNEFVKHKILDIVGDLYLLGSNLIGHYEGYKTGHLLNDQLLSAILERPDTWSIETFEEENSPIQFYSEDWQNSL
>NZ_CP010552.1|WP_053950784.1|94233_95967_-|biosynthetic-type-acetolactate-synthase-large-subunit
MKLNGAQILVDCLKSEGVKHIFGYPGGAVLHIYDALNACTTIDHILVRHEQGAVHAADGYARTSGKCGVSLVTSGPGLTNAVTGIATAFTDSIPMVVISGQVPSAVIGSDAFQEVDAVGITRSCVKHNFLVKNANDLAETIKKAFYIATTGRPGPVLIDITKDATIAEIEYEGYPETIKMRSYQPEVQINTEQVAKAIAIIEKSQKPIIYSGGGSVIGNASETLTTLTRSTGFPITQTLMGLGAYPATDKQSLGMLGMHGTYESNMAMHDSDCIIAVGARFDDRITGNLEKFCPYAKIIHIDIDPSSVGKVVGVDVSVIGQVNDVLHALIQGLKGKTLPNIDTWWQQINEWRKVDSLAYQTAEGVIKPQTVIETLYEVTNGQAIVTSDVGQHQMWAAQYYPFDKPRRWINSGGLGTMGFGLPAAMGAKLAEPELEVACVTGDGSIQMMTQELSTMLQYNTPVKIINLNNGYLGMVRQWQEFFYEKRYSMSYMEALPDFVKLAESYGHIGIRVEKEVDLKPALIEAFKQKDRTVFLDIITDPTENVFPMIPSGAGHHEMLLAGRDEMASTNDSGLNLV
>NZ_CP010552.1|WP_053950783.1|93754_94231_-|acetolactate-synthase-small-subunit
MRHIISIQLENESGALSRVSGLFSARGFNIESLTVAATNDPTLSRMTIVSVGDDDIIEQIVKQVNKLVDVVKVTDLTATEHIERELLIVKISISNNTQVDVDAQLDHFNAKVIDASEDAYIVELAGKSQKINDFLKAFSAEQIIEVSRTGVTGVCQKI
>NZ_CP010552.1|WP_053950793.1|107178_107982_+|shikimate-dehydrogenase
MYKLAVFGNPIEHSLSPDIHAQFAQQTGVEVDYQKILAPVNDFSQFATAFIHKGASGFNVTVPFKLDAFNFATELTLNAKTAGAVNTIKIQGSKIIGENTDGIGLVNDLTNHLNIELENKVVLILGAGGATQGILLPILSKNPKRVMIANRTASKAEKLARDFAKYGKTCGFGLDKIKDDPVDIIINATSASLAGKMPDIASGCANHAICYDLMYGQQTPFMDWAKANNAAVIADGLGMLVEQAASSFEFWTGATPDTRTVIKNLRS
>NZ_CP010552.1|WP_053952171.1|107970_108603_-|pyridoxamine-5'-phosphate-oxidase
MDLNALRREFTSSGLSREQMDASPFAQFETWINQASEADLTLPNAMSLATSDSDEVSVRTVLLKSFDERGFVFFTNYNSKKSQQIQKNPNAALLFPWLDLERQVKISGRVEKISTLESIKYFSSRPKDSQLGAWASNQSGSLSSRQALLTQFEAMKSKFKKGEIPLPDFWGGYRVIPHRIEFWQGQENRLHDRFSYLKQGEDWIIERLAP
>NZ_CP010552.1|WP_053950794.1|108608_109835_-|5-demethoxyubiquinol-8-5-hydroxylase-UbiM
MQTPYDIVVIGAGPAGLSFASSMLDANVRVLLLERADLAEISHPKADGREIALTHLSLKILKKLGVWDLVDQTEVSPLKEAKVFDGDSPSLLNFKSDNAAIEALGYLVPNYQIRQALYHKVSKAENITIQANTLVEDVIQLENSAEVVLASGEHIETKLVVAADSRFSSIRRKVGIPTLMKDFSKVMIVTKMMHEKSHENIALECFDYGKTLALLPMIGNASSIVLTVKTNESQALLDMNEKEFNQFVTDAFKAELGVMTQSGERHSYPLVATHAQTFFAKRFALIGDAAVGMHPVTAHGFNLGLRGQDILANLIKEALVHGQDIGSNALLKLYEKKHINLTRLMFFGTNGIVALFTNDAPMIKQVRRMVLKFAENFPPIKYLIANHLTEAKSNNFAPFDKILKKLPF
>NZ_CP010552.1|WP_053950795.1|109890_110307_+|hypothetical-protein
MIYVVIQFSCIIYLILNTQYEHFDFTALILLLVALIIGLTAVVNMKVSNLNIMPTLKKSHQLRTNGIYQFIRHPMYTSVLLLCLALMLSNVHYISQVVMLILLIDLILKSRFEEKLLIERFENYPAYQQKTGRFIPFL
>NZ_CP010552.1|WP_053950796.1|110301_111345_-|sel1-repeat-family-protein
MKVLSLFFLLFSGALFAESDLYDRAKAYYYGDGVEQNYSKAFKAFSHADKAGDLAAKTALGLMYIEGKGTEQNDKKGINLLKESAARSHTQAQYYLGSMYYLGIGVDRNSEIAHQWIKKAANQGNVDAQHNLSQMYAKGDGVKQNPLLANKWRIEAAQSGHRDEQYHLGAAYVDDKDYQQAYQWILRSANQEHALAQQQLAEFFERGNGVKKDVKKALYWYQKSFDNGNTELAYVLANYYDASTHRPANYKRSHKLYQQSIKQGNLPAYLDIARHYELGQGVNRDLTKTYNFSIAAARKGHRPAWRKVANLYLQGRGVQPSIKKARYWLKKLSNSGDVQATQQLKEL
>NZ_CP010552.1|WP_053950797.1|111394_111727_-|helix-turn-helix-transcriptional-regulator
MNNKSNAKLEKCPVETSIDILAGKWKILILWYLLSETKRFNELQKLMPRITQKMLIQKLRELERDEIVHREVYPVVPPKVEYSLTLYGKSLKPILKALYLWGDIHKNKAT
>NZ_CP010552.1|WP_053950798.1|111839_112814_+|YhdH/YhfP-family-quinone-oxidoreductase
MKAFVVEKIKDKEFTTGVKEVEKPILSEHEVLIKTSYSSLNYKDALSSTGNPGVTIVFPHITGIDVSGIVAESKSNLFAVGDEVLITGYDLGMNTNGGHSEFIKAPDTWVIKKPDNISLRELMIYGTAGLTAALSVNELLNNGITSGEILVTGATGGVGSISVAILSKLGFDVIALSGKEDQIDYLKSIGAKEIILRKDFDIENKRPMGRERFSGVIDTVGGNILAEALKQIKYDGVATCCGLTASPVFNTNVFPFILRGVRLIGIDSVEASLAKKTQAWEKIASDFKINTLEKLVNEISLNEIQQAYKEILAAKAVGRYLVKL
>NZ_CP010552.1|WP_053950799.1|112810_113740_+|NADP-dependent-oxidoreductase
MRAIRIHQYGGTETLQLNQIDTPKINTDDILIKVKSSSINPVDWKIREGYLKDFIPYQMPVTLGFDVSGVVSEVGSEVTDFKVGDEVFSRPDISRDGAYADYIAVKADEVAFKSPKLSFEQAAALPLAGITAWQCLVDVGQLQAGQRVLIHAGAGGVGHLAIQIAKAKGATVIATASTANQELLTQFGADQAVDYTKGSLLEQIEPVDLVIDTIGGEVQSNSWALLKAGGMLVSIVDQPSEELAKQHNAKAAFVFIESSSRILRELNKLVEKDQLLPFIEHRFSLEQIADAHLQSQTGRTRGKIIIKVS
>NZ_CP010552.1|WP_053950800.1|113959_114655_-|orotidine-5'-phosphate-decarboxylase
MKDIKLEDRLIFALDVPEVNQAKDLVNQLDDSVNFYKIGMEMLMTGQYFQLMDWLIAKDKKVFVDLKFFDVPETVGRTIARLSQTGATFATIHGNQGLMEKAAENKGDLKILAVTALTSLDRGDLDDLGFKCDVKDLVISRAKRAFEAGCDGVVSSGLEVPFLRQYVDNKLIAVTPGIRPVDNDDDQKRVVDVATAFKSGSDYIVVGRPIKNADNPYEAASNIQETIKTCF
>NZ_CP010552.1|WP_053950801.1|114667_114958_-|sel1-repeat-family-protein
MAVEKTFEQAKQLAEQGDAQSQYELALAYDLGLGVDKDLSKAFEWYQKSANQEYAKAQYNLGIFYALAKSVDKDIEQSKLWIRKANENGYSGGSIF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP010552_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010552_2

1427447-1427609

Orphan

Consensus_repeat	Method
TCCTTATAATTCACTTGTGTTCCTTGGCCATCAATATACATCAGAGCCAAGTTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010552_2

>merge|NZ_CP010552|2|1427447-1427609|CRISPRCasFinder
TCCTTATAATTCACTTGTGTTCCTTGGCCATCAATATACATCAGAGCCAAGTTATGTTGAGCTTTAGGGTCTCCAAGTTCAGATGCTCTTAATAGCCATCTAACTGCCTCCTTATAATTCACTTGTGTTCCTTGGCCATCAATATACATCAAAGCCAAGTTAT

>NZ_CP010552|2|2|1427447-1427609|CRISPRCasFinder
TCCTTATAATTCACTTGTGTTCCTTGGCCATCAATATACATCAGAGCCAAGTTAT	GTTGAGCTTTAGGGTCTCCAAGTTCAGATGCTCTTAATAGCCATCTAACTGCC
TCCTTATAATTCACTTGTGTTCCTTGGCCATCAATATACATCAAAGCCAAGTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010552.1\|WP_053952077.1\|1424669_1425263_+\|inovirus-type-Gp2-protein	unknown	unknown	gnl\|CDD\|371695
NZ_CP010552.1\|WP_144418612.1\|1425610_1426690_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273776
NZ_CP010552.1\|WP_053952084.1\|1430382_1431027_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010552.1\|WP_053952081.1\|1429584_1429782_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010552.1\|WP_053952251.1\|1428871_1429105_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010552.1\|WP_053952075.1\|1420343_1422347_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NZ_CP010552.1\|WP_053952071.1\|1416324_1418169_+\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|235360
NZ_CP010552.1\|WP_053952087.1\|1431627_1431942_-\|sulfurtransferase-TusA-family-protein	unknown	unknown	gnl\|CDD\|376492
NZ_CP010552.1\|WP_053952088.1\|1431941_1432535_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|236845
NZ_CP010552.1\|WP_053952074.1\|1419176_1420259_-\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|378455
NZ_CP010552.1\|WP_053952080.1\|1428204_1428819_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP010552.1\|WP_053952072.1\|1418195_1418534_+\|ISC-system-2Fe-2S-type-ferredoxin	unknown	unknown	gnl\|CDD\|131062
NZ_CP010552.1\|WP_053952082.1\|1429799_1430084_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010552.1\|WP_053952073.1\|1418669_1419092_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010552.1\|WP_053952083.1\|1430080_1430371_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010552.1\|WP_053952070.1\|1415796_1416312_+\|Fe-S-protein-assembly-co-chaperone-HscB	unknown	unknown	gnl\|CDD\|179914
NZ_CP010552.1\|WP_053952076.1\|1422872_1424063_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271182
NZ_CP010552.1\|WP_053952085.1\|1431030_1431315_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010552.1\|WP_158403362.1\|1431405_1431570_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273828
NZ_CP010552.1\|WP_082319668.1\|1424262_1424445_+\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848

Protein	Function_ID	Function_description	E-value
NZ_CP010552.1\|WP_053952077.1\|1424669_1425263_+\|inovirus-type-Gp2-protein	gnl\|CDD\|371695	pfam11726, Inovirus_Gp2, Inovirus Gp2. Isoform G2P plays an essential role in viral DNA replication; it binds to the origin of replication and cleaves the dsDNA replicative form I (RFI) and becomes covalently bound to it via phosphotyrosine bond, generating the dsDNA replicative form II (RFII).	4.70084e-17
NZ_CP010552.1\|WP_144418612.1\|1425610_1426690_-\|hypothetical-protein	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	0.00703439
NZ_CP010552.1\|WP_053952075.1\|1420343_1422347_+\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP010552.1\|WP_053952071.1\|1416324_1418169_+\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0
NZ_CP010552.1\|WP_053952088.1\|1431941_1432535_-\|YeeE/YedE-family-protein	gnl\|CDD\|236845	PRK11099, PRK11099, putative inner membrane protein; Provisional.	4.70232e-21
NZ_CP010552.1\|WP_053952074.1\|1419176_1420259_-\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	3.05274e-144
NZ_CP010552.1\|WP_053952080.1\|1428204_1428819_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	3.03771e-32
NZ_CP010552.1\|WP_053952072.1\|1418195_1418534_+\|ISC-system-2Fe-2S-type-ferredoxin	gnl\|CDD\|131062	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	2.41969e-56
NZ_CP010552.1\|WP_053952087.1\|1431627_1431942_-\|sulfurtransferase-TusA-family-protein	gnl\|CDD\|376492	pfam01206, TusA, Sulfurtransferase TusA. This family includes the TusA sulfurtransferases.	1.48576e-13
NZ_CP010552.1\|WP_053952070.1\|1415796_1416312_+\|Fe-S-protein-assembly-co-chaperone-HscB	gnl\|CDD\|179914	PRK05014, hscB, co-chaperone HscB; Provisional.	1.52602e-39
NZ_CP010552.1\|WP_053952076.1\|1422872_1424063_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.04729e-64
NZ_CP010552.1\|WP_158403362.1\|1431405_1431570_-\|hypothetical-protein	gnl\|CDD\|273828	TIGR01840, poly3-hydroxybutyrate_depolymerase_A_precursor, esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. [Fatty acid and phospholipid metabolism, Degradation].	0.00665381
NZ_CP010552.1\|WP_082319668.1\|1424262_1424445_+\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	3.09563e-13

>NZ_CP010552.1|WP_144418612.1|1425610_1426690_-|hypothetical-protein
MKLRTTLVLFLLSFFIVGCYSDDLMLPEGNAEPNRMPITDRWAADVVEAEVPGWLGQAKGPPTDAERDALVAEGGGKVNQKPIVDRWTTDVVEPGIPKENANSMGKWKIDRSVSRMDDSVKITASLEATNKNSIGKPVSLNFSCTKSKRDIKAFVDFGEWVAIHTNIENPVWVRIDKGSKSAYLWGSNQFFNGQLAPFHLGLTASHQSGYGGASTYLEEIEFTMRWLMDTNRLLIQITPFLKSERILEFQTSGFSEATKLLIEACDLTNMWPKIPKSAIGIVKGREMVWVVNPQTNKAELRYIYTNINQKWLFNTIESGKVSVKSSGLKFGDKIIANPSGITSGMQVNDKVSVFTFTKP
>NZ_CP010552.1|WP_053952077.1|1424669_1425263_+|inovirus-type-Gp2-protein
MKKPRNRKTVINDGWIDYNGEKIEICNSSKFGIYKKILLSFIEQLDTAIQIHGRVLVLRSDFHMNFYTSDNKIFSNYIKNIKQYLKRHYDITNIGYQWVREQEKAKKQHYHLVLMLDGNKIRHPSKLNKIMKSKWLPRGHMHIPENCFYLIDKDNIEKQRPEAIYRASYMAKSRGKGVRPAQTKDFYCSRLKLKNCA
>NZ_CP010552.1|WP_082319668.1|1424262_1424445_+|AlpA-family-phage-regulatory-protein
MSNTIIKLDEVKRRTTFSGSTIYRLAAEDKFPKPIKLSERSSGWLLREVHEYLEKRIQNR
>NZ_CP010552.1|WP_053952076.1|1422872_1424063_+|tyrosine-type-recombinase/integrase
MSLTETQIQKFKSKDKVYRKLDKDGLYLEVATSGTKSWIHRYSFNNKSTMRVIGHYDNKSMSLRSAREELLDDKKLLDRGVNPKDVKGKNKNKSTSVGVTFKDVFFEWHNLQSNSWSPAYAQDVIERASNYLLPFIGSKLVRDITPQEMITLLKRMDDKGVLDTLSKVRSIASRVFRYSVGIGMSDVDPVRDIPNDIFTPKKKSHYSTMTKPKDISRLLKMIDCHQGTHQVETALKLAPYLFLRPGELTGLTWDEIDFDNSLIRIDAQRMKMKVEHLVPMSEQVVSIIRELQTIKTNSKFLFPSPKSKSQPITTTALRAALRGLGISKEEFTPHGFRHMASTQLNELGYKSDIIERQLSHAEKNKVRAAYNYAEYLSERVKMMSEWANYLDKLKSQ
>NZ_CP010552.1|WP_053952075.1|1420343_1422347_+|methionine--tRNA-ligase
MSSRKILVTSALPYANGEIHLGHLLEYIQTDIWVRFQKMMGNECHYVCADDAHGTPIMLKANELGITPEELIKGVSERHQADFKEFFIGFSQYHSTHSEENREISADIYNKLNDKGFIKTRTISQAFDPEKQMFLPDRFIRGECPKCGAKDQYGDNCEVCGATYSPTELINAKSAVSGATPITKDSEHYFFDLPQFEDQLKAWTEAGHLQVEISNKLAEWFEQGLQQWDISRDAPYFGFQIPGVENKYFYVWLDAPIGYMASFKKLCNEKGLDFDEYFSKDSKTELYHFIGKDIIYFHALFWPATLMGSDYRTPTAIYAHGFLTVNGQKMSKSRGTFIQARAYLDSLNPECLRYYYAYKLSSKIDDIDLNLQDFKQRVNSDLVGKVVNIASRCSGFIVKKFDKTLSAYAIEPELYNEFVDKGEDIAKLYEARNYNQAMREIMKLADKANQYIDEHKPWQLIKEEGSEAQVHDVTSLALNLFRVLMTYLKPVLPEMAKQAEDFLNIDTLNWADLKHPLTKHQINKFKPLMSRIEDEQINAVIEASKQTTIQQESEQEEDDSMISIDDFTKIDLRIAKIVKAEHVEGADKLLQLTLDIGEENTRNVFAGIKAHYKPEDLEGRLTVMVANLAPRQMKFGLSEGMVLAAGDGKTLHILSPDSGAKAGMKIS
>NZ_CP010552.1|WP_053952074.1|1419176_1420259_-|iron-sulfur-cluster-carrier-protein-ApbC
MADLTVDNINNILSSVVDKYTEQDIVSSNSINNIDINGDKVEITIELNYPAKGYHDELSKQITDALTANGINNASVNIETKIVKYSTQKGVEILSEVKNIIAVASGKGGVGKSTTSVNLALALQAEGAKVAILDADIYGPSQPRMLGVSKLKPDTSAEGKLLPILGHGMQSMSIGYLVDEDNPMIWRGPMVTQALEQMLRDTLWRGVDYMIIDLPPGTGDTQLTLSQKIPVSGSVIVTTPQDIALLDAKKGLKMFEKVNIPILGIVENMSLHICSKCGHEEAIFGVGGGESMAKEADVNFLGALPLEMDIRTDVDEGTPTVAKNPDGRVAEIYKEIARNVSAKLTQQDRAMSSFPSITIE
>NZ_CP010552.1|WP_053952073.1|1418669_1419092_-|hypothetical-protein
MDYFQKFKGRFVGIMQLDDCDQLLQTLISTPNDWFVYDTLQPMPSKCLDADDFVKKVKQIKSIIDDEHDERYCGIVYADDVKNPTFVKIFHPKNLGKTCGSSENPPMPQWIISKEKPMDVVAEFGSKEESEGFISKYLKF
>NZ_CP010552.1|WP_053952072.1|1418195_1418534_+|ISC-system-2Fe-2S-type-ferredoxin
MPQIIILPHHELCPEGVVIEAKSGETVCNAMLANDVEIEHACEMSNACTTCHIYVREGFDSLAESDETEDDMLDKAWGLDPDSRLSCQSVVSDTDLVVEIPKYTINQVSENH
>NZ_CP010552.1|WP_053952071.1|1416324_1418169_+|Fe-S-protein-assembly-chaperone-HscA
MALLQISEPGQASAPHQHKLAIGIDLGTTNSLVASVMSGQSTILTDENNQSILPSVVHCGKDNKLTVGCDACPYAKTDPTNTIVSVKRFMGLGFKEVSNFKNCPYQLVENGNNVLFHTAMGDLSAVEISSTILSSLKERAEKSLGGDLVGAVITVPAYFNDAQRQATKDAATLAGLNTLRLLNEPTAAAVAYGLESGEEGVHAIYDLGGGTFDISILSFSKGVFKVLATGGDSTLGGDDFDQLIIDDCVEKMGVSELTPTQMQKIKQFARVAKETLSTQDFAEFDCIETPYKITREKFDKLSSKLIKRTLLLVKRALRDAQVEMSAVKDVIMVGGSTRMPQVRSMVTDLFNKPVLCSINPDEVVAKGAAIQANILAGNKSADEMLLLDVLPLSLGLETMGGLVEKVVHRNTTIPITRAQEFTTFKDGQSAMSIHVLQGERELVKDCRSLGRFDLTGIPPMVAGNARIRVEFQVDADGLLSVSASEQVSGVKAQVVIKPSYGLSDGQMEQMLKDSILFAKSDIEARQLHETQVDANRTLEAIDSALAKDKDMIDQQMFDDIMQARSELEAVVSHTEEKVIQNKIDHLEKTCAGFVEMRMNASVMKAMQGHNVDEF
>NZ_CP010552.1|WP_053952070.1|1415796_1416312_+|Fe-S-protein-assembly-co-chaperone-HscB
MQNYFELFSLTPNFNVDLTLLESAYQQQVSKFHPDKFATHSDQEKSLALQNTSLINTAYDTLKSALLRATYLLELEGVNAFDEKDTQMDMEFLLAQIELREALESIESHQDELALDEFIDQVTGKIKLNIEHITQAFNANNQTQTIKNLVRELKFYEQLNLQAKQLMDEWI
>NZ_CP010552.1|WP_053952080.1|1428204_1428819_-|pentapeptide-repeat-containing-protein
MILKTLLTALFFVFVFSQPVFAVESEDAKIAQNLLKFNALNACVGCDLSRVNLTKANLTRADLIEANLTEADLTGANLSGAFLTGANLSGAFLREANLTGADLSKANLKYATLHRANLGKANLTEADLTGAHLSGAFLREANLTGADLTGAYLTGADLKEAILHRANLTDADLTETKLKNAEIKGAIFCNTKTPWGLDNSGCKK
>NZ_CP010552.1|WP_053952251.1|1428871_1429105_-|hypothetical-protein
MKADDLLLELNVNPIQRLIEIAESDLTPIDQKINCYKTIAQYTYPKFKSQELRVTSMEEAAPIKIEIVAYGEDKVLD
>NZ_CP010552.1|WP_053952081.1|1429584_1429782_-|hypothetical-protein
MTNLKYFVLDVGYFPDSSHLKNELKFIETQNETSIIANFSINKMADQDWDQVLNHIIDSEKNIIL
>NZ_CP010552.1|WP_053952082.1|1429799_1430084_-|hypothetical-protein
MTISNTKKDILVFAISDHAEAMRVAAGLTIFGHRVSCIFVDRHIEENAETIENAELLELCEIEPLSILDDANMQQIDQVQFRAELDKSNHILTI
>NZ_CP010552.1|WP_053952083.1|1430080_1430371_-|hypothetical-protein
MSLLFIISQERGADLLLPLSDACIRKKYQYSCFFTGAGIKTLEDAKIKQNLNIIENSVACHHSWDRYLPNTTSIATMGSQTNLSEMIANHDKVVSI
>NZ_CP010552.1|WP_053952084.1|1430382_1431027_-|hypothetical-protein
MLYIIGISIFLHLGESIANTDISYTNNLSKEFLENIVPVNSSKLQECTLYSAKKTKCMPFNDFESKGELASFRDIFWAFSTSNIVHTDELLIYGESQKESQALAALFFLAGQKKIWIWSNNNIKQLVEATGKASGSKRQLFRSSAYLGRMRENFLVLKSQIQKMKDQNWRFVDNPKTQSKHEKIIIQSKDISTSLAVFANLVALDYTNVKIIID
>NZ_CP010552.1|WP_053952085.1|1431030_1431315_-|hypothetical-protein
MKYQTKLGLIFCSSALTISLIVLLLIFPFAKLSPEEIKHMNTPQNIENFDLNINMGDDYGFLPVVELMDHYMENPPTTNNNTLLKIPERQFGGC
>NZ_CP010552.1|WP_158403362.1|1431405_1431570_-|hypothetical-protein
MIMTVVIFFYMFAKTPESLKTSRNGVPFFTPAAIHPESGEILSIETLVKHFKGN
>NZ_CP010552.1|WP_053952087.1|1431627_1431942_-|sulfurtransferase-TusA-family-protein
MGLFTKKVTEKVTNISDNDPTITLDNGDVINVTKTIDCLGFSCPRPQLMTKGAMNDAKSGDIVKIVIDNPTSMESLASMQSELSSTHLGTVFSDQSWKVLLQKN
>NZ_CP010552.1|WP_053952088.1|1431941_1432535_-|YeeE/YedE-family-protein
MSVIGEILVAFLFGSIVGLLVQRSRFCNTAALRDAILFKTYRNTEALLLAMMVLTIGFTTFITFGLGHTMKFDVGLNQVIGLFIFGIGMVLAGACTVSTWVKSGEGNVGAIWALIFTFIGMFLFSLLWSFDYWPPAPIAMTGEPNLETLQLGFANAETLQEKTGIPAIFFGLIQFAVLLFIYLKIQAKKSLQTTGDK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010552_1	1.1\|106921\|27\|NZ_CP010552\|CRISPRCasFinder	106921-106947	27	NZ_CP039728	Bacillus sp. S3 plasmid unnamed, complete sequence	127891-127917	5	0.815

1. spacer 1.1|106921|27|NZ_CP010552|CRISPRCasFinder matches to NZ_CP039728 (Bacillus sp. S3 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

caacaaggtcaggcaaaaaagcaagga	CRISPR spacer
gctgaaggtcaggcaaaaaaacaagga	Protospacer
    ****************.******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

223948 : 233317

Bacillus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053950906.1\|223948_226108_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.6e-11	26.2
WP_053950907.1\|226195_227239_+	ribonuclease D	NA	NA	NA	NA
WP_053950908.1\|227222_227753_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	2.2e-52	54.8
WP_053950909.1\|227756_228332_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_053950910.1\|228357_228837_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	8.5e-32	46.9
WP_053950911.1\|228914_230822_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.5e-145	51.1
WP_053950912.1\|230904_232017_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	3.9e-27	37.5
WP_053950913.1\|232036_233317_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	2.3e-140	61.1

DBSCAN-SWA_2

282335 : 292034

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053950958.1\|282335_282779_+	dCMP deaminase family protein	A0A2H4N7Q7	Lake_Baikal_phage	5.1e-47	63.4
WP_053950959.1\|282781_284350_+	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	3.3e-32	28.0
WP_053950960.1\|284358_284601_-	hypothetical protein	NA	NA	NA	NA
WP_053950961.1\|284763_287355_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	6.8e-99	31.3
WP_053950962.1\|287485_288541_-	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	1.5e-84	48.3
WP_053950963.1\|288555_289347_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_053950964.1\|289349_289721_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	2.4e-13	37.8
WP_053950965.1\|289796_292034_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	6.7e-79	34.6

DBSCAN-SWA_3

363303 : 424101

Shigella_phage(17.65%)

tRNA,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053951041.1\|363303_365901_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	8.6e-78	38.6
WP_053951042.1\|365941_366556_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_053951043.1\|366555_367380_-	PHP domain-containing protein	NA	NA	NA	NA
WP_053951044.1\|367469_367943_+	transcriptional activator RfaH	NA	NA	NA	NA
WP_053951045.1\|368013_369867_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A0A1J0F994	Only_Syngen_Nebraska_virus	3.0e-125	42.2
WP_053951046.1\|369867_370707_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	4.2e-58	43.5
WP_053951047.1\|370703_371918_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_053951048.1\|371968_373828_-	polysaccharide biosynthesis protein	A0A2P1ELS8	Moumouvirus	9.7e-23	29.0
WP_053951049.1\|373824_374385_-	sugar transferase	NA	NA	NA	NA
WP_144418567.1\|374495_376037_-	hypothetical protein	NA	NA	NA	NA
WP_053951051.1\|376041_377181_-	dTDP-4-amino-4,6-dideoxygalactose transaminase	A0A2K9L0G1	Tupanvirus	5.2e-27	30.6
WP_053951052.1\|377240_377591_-	hypothetical protein	NA	NA	NA	NA
WP_053951053.1\|377583_378501_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	6.6e-33	30.0
WP_053951054.1\|378491_379091_-	hypothetical protein	NA	NA	NA	NA
WP_053951055.1\|379260_380202_-	NAD-dependent epimerase/dehydratase family protein	A0A1V0SKV4	Klosneuvirus	1.3e-07	25.2
WP_053951056.1\|380201_381350_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_053951057.1\|381352_383287_-	asparagine synthase (glutamine-hydrolyzing)	A0A0G2Y369	Acanthamoeba_polyphaga_mimivirus	6.1e-28	29.2
WP_053951058.1\|383312_384140_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_053951059.1\|384262_384952_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_053951060.1\|385137_385836_+	PIG-L family deacetylase	NA	NA	NA	NA
WP_053951061.1\|385865_386606_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_053951062.1\|386662_388084_-	hypothetical protein	NA	NA	NA	NA
WP_053951063.1\|388076_388805_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_053951064.1\|388805_389093_-	HAD family hydrolase	NA	NA	NA	NA
WP_158403311.1\|389312_389465_-	hypothetical protein	NA	NA	NA	NA
WP_144418568.1\|389524_390736_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	8.5e-20	29.8
WP_053951065.1\|390750_391299_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_158403313.1\|391353_391968_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_053951067.1\|392274_392571_-	HAD family hydrolase	NA	NA	NA	NA
WP_053951068.1\|392587_394162_-	hypothetical protein	NA	NA	NA	NA
WP_053951070.1\|394567_395410_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_053951071.1\|395428_396844_-	hypothetical protein	NA	NA	NA	NA
WP_053951072.1\|396865_397555_-	hypothetical protein	NA	NA	NA	NA
WP_053951073.1\|397611_398301_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_053951074.1\|398249_398567_-	glycosyltransferase	NA	NA	NA	NA
WP_158403315.1\|398559_399162_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_082319619.1\|399589_400762_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	8.2e-20	29.8
WP_053951076.1\|400793_401429_-	hypothetical protein	NA	NA	NA	NA
WP_053951077.1\|401425_402211_-	hypothetical protein	NA	NA	NA	NA
WP_053951078.1\|402409_403846_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_158403318.1\|404022_404367_-	methyltransferase FkbM domain protein	A0A1B1IVQ8	uncultured_Mediterranean_phage	4.3e-09	34.5
WP_144418570.1\|404348_404816_-	FkbM family methyltransferase	A0A1B1IVQ8	uncultured_Mediterranean_phage	8.6e-21	51.0
WP_053951079.1\|404900_406433_-	polysaccharide biosynthesis PFTS motif protein	NA	NA	NA	NA
WP_082319619.1\|406490_407663_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	8.2e-20	29.8
WP_053951080.1\|408011_409292_-	DUF4910 domain-containing protein	NA	NA	NA	NA
WP_053951081.1\|409363_410932_-	acyl--CoA ligase	NA	NA	NA	NA
WP_053951082.1\|411095_411350_-	acyl carrier protein	NA	NA	NA	NA
WP_053951083.1\|411378_412149_-	AAC(3) family N-acetyltransferase	NA	NA	NA	NA
WP_053951084.1\|412149_412674_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_053951085.1\|412725_413772_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_053951086.1\|413842_414487_-	glycosyltransferase family 2 protein	B9UDL7	Salmonella_phage	4.1e-05	33.8
WP_053951087.1\|414468_415536_-	N-acetylneuraminate synthase	A0A1B1IVE2	uncultured_Mediterranean_phage	1.2e-17	28.0
WP_053951088.1\|415546_416446_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_053951089.1\|416445_418476_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_053951090.1\|418477_419347_-	hypothetical protein	NA	NA	NA	NA
WP_144418571.1\|419383_420304_-	hypothetical protein	NA	NA	NA	NA
WP_053951092.1\|420343_421342_-	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	A0A1V0SAI8	Catovirus	1.6e-40	36.1
WP_082319674.1\|421503_423180_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.0e-28	26.9
WP_053951094.1\|423327_424101_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA

DBSCAN-SWA_4

481540 : 489493

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053951145.1\|481540_482416_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	8.0e-36	36.4
WP_053951146.1\|482425_482980_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.4e-40	49.7
WP_053951147.1\|482976_483858_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-100	60.6
WP_053951148.1\|483854_484922_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.2e-91	50.3
WP_053951149.1\|484918_485962_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	A0A2K9L0I7	Tupanvirus	6.3e-80	46.5
WP_053951150.1\|485988_487257_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA
WP_053951151.1\|487262_488273_-	NAD-dependent epimerase	A0A2K9L4U8	Tupanvirus	8.6e-34	30.6
WP_053951152.1\|488317_489493_-	nucleotide sugar dehydrogenase	M1GX70	Paramecium_bursaria_Chlorella_virus	1.6e-108	51.8

DBSCAN-SWA_5

1121044 : 1134126

Bacillus_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053951773.1\|1121044_1124482_+	DNA polymerase III subunit alpha	A0A291AVZ2	Streptomyces_phage	4.6e-188	37.6
WP_053951774.1\|1124506_1126786_-	DNA internalization-related competence protein ComEC/Rec2	Q332C0	Clostridium_botulinum_C_phage	3.3e-25	30.4
WP_053951775.1\|1127130_1128324_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	3.7e-36	29.0
WP_053951776.1\|1128320_1129337_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.2e-44	35.2
WP_053951777.1\|1129427_1130435_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	6.4e-114	64.0
WP_053951778.1\|1130457_1130850_+	regulatory protein RecX	NA	NA	NA	NA
WP_144418597.1\|1130815_1131220_+	hypothetical protein	NA	NA	NA	NA
WP_053951780.1\|1131203_1133006_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	6.7e-37	27.4
WP_053951781.1\|1133019_1134126_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.6e-95	50.6

DBSCAN-SWA_6

1410933 : 1418169

Escherichia_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053952063.1\|1410933_1411671_+\|tRNA	tRNA 2-thiocytidine biosynthesis protein TtcA	A0A0U2S5Z2	Escherichia_phage	4.1e-33	34.1
WP_053952064.1\|1411663_1412509_+	lysophospholipid acyltransferase family protein	A0A1W6JP29	Morganella_phage	5.9e-20	26.9
WP_053952065.1\|1412571_1413270_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_053952066.1\|1413358_1413778_+	Rrf2 family transcriptional regulator	M4M9K8	Vibrio_phage	7.0e-06	28.1
WP_053952067.1\|1413782_1414997_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA
WP_053952068.1\|1415073_1415451_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	4.2e-50	75.0
WP_053952069.1\|1415457_1415781_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.4e-22	48.6
WP_053952070.1\|1415796_1416312_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_053952071.1\|1416324_1418169_+	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	4.3e-108	40.1

DBSCAN-SWA_7

1440978 : 1451023

Klosneuvirus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144418613.1\|1440978_1442937_+	M3 family metallopeptidase	A0A1V0SID3	Klosneuvirus	2.3e-38	25.4
WP_053952099.1\|1442969_1443185_+	hypothetical protein	NA	NA	NA	NA
WP_053952100.1\|1443235_1444474_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_053952101.1\|1444554_1444782_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	7.6e-07	39.2
WP_053952102.1\|1444866_1445553_-	7-cyano-7-deazaguanine synthase QueC	A0A1V0DY95	Dinoroseobacter_phage	1.3e-28	39.2
WP_053952103.1\|1445545_1447429_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	2.4e-93	36.0
WP_053952104.1\|1447559_1449191_-	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	1.2e-173	61.7
WP_053952105.1\|1449204_1449492_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	3.9e-16	45.7
WP_053952106.1\|1449537_1450380_-	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	1.3e-38	39.8
WP_053952107.1\|1450417_1451023_-	guanylate kinase	K4JYM5	Abalone_herpesvirus	3.4e-17	31.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010552

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection