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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012677 Arthrobacter alpinus strain R3.8, complete genome 2 crisprs cas3,DinG,WYL,csa3,RT,DEDDh,PD-DExK 0 1 2 0

Results visualization

1. NZ_CP012677
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012677_1 948323-948406 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012677_2 2126535-2126607 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 KF977490 Rhizobium phage vB_RglS_P106B, complete genome 35745-35774 5 0.833
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 NZ_CP053709 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence 62951-62980 6 0.8
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 NZ_CP053709 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence 405333-405362 6 0.8
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 NZ_CP053711 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence 27153-27182 6 0.8
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 NC_047973 Microbacterium phage Hyperion, complete genome 39695-39724 6 0.8
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 KF977490 Rhizobium phage vB_RglS_P106B, complete genome 35775-35804 6 0.8
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 MT104473 Pseudomonas phage MR13, complete genome 2728-2757 6 0.8
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 MT104475 Pseudomonas phage MR15, complete genome 2709-2738 6 0.8
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 KJ507100 Pseudomonas phage phiPSA1, complete genome 2709-2738 6 0.8
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 HM486077 Tsukamurella phage TPA2, complete sequence 16155-16184 6 0.8
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 NC_015210 Tsukamurella phage TPA2, complete genome 16155-16184 6 0.8
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 NZ_CP020568 Kitasatospora aureofaciens strain DM-1 plasmid unnamed1, complete sequence 110782-110811 7 0.767
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 NZ_CP039340 Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence 1503312-1503341 7 0.767
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 NZ_CP032704 Pantoea dispersa strain DSM 32899 plasmid unnamed2, complete sequence 135010-135039 8 0.733
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 MK095605 Pantoea phage vB_PagS_MED16, complete genome 15470-15499 8 0.733
NZ_CP012677_1 1.1|948350|30|NZ_CP012677|CRISPRCasFinder 948350-948379 30 NZ_CP027859 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence 1533577-1533606 9 0.7

1. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to KF977490 (Rhizobium phage vB_RglS_P106B, complete genome) position: , mismatch: 5, identity: 0.833

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
cagcaccgcagcagcagccgtatggccagc	Protospacer
* *..* ***************.*******

2. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
gatcgcagcagcagcagccgggcggccagc	Protospacer
   .**************** .********

3. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
gatcgcagcagcagcagccgggcggccagc	Protospacer
   .**************** .********

4. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to NZ_CP053711 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
gatcgcagcagcagcagccgggcggccagc	Protospacer
   .**************** .********

5. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to NC_047973 (Microbacterium phage Hyperion, complete genome) position: , mismatch: 6, identity: 0.8

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
agcagcagcagcagcagccgtacgtgcagc	Protospacer
    ********************  ****

6. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to KF977490 (Rhizobium phage vB_RglS_P106B, complete genome) position: , mismatch: 6, identity: 0.8

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
aacagccgcagcagcagccgtatggccagc	Protospacer
    ** ***************.*******

7. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to MT104473 (Pseudomonas phage MR13, complete genome) position: , mismatch: 6, identity: 0.8

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
gtaagaagcagcggcagccgtccggccagc	Protospacer
 *. * ******.******** ********

8. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to MT104475 (Pseudomonas phage MR15, complete genome) position: , mismatch: 6, identity: 0.8

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
gtaagaagcagcggcagccgtccggccagc	Protospacer
 *. * ******.******** ********

9. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to KJ507100 (Pseudomonas phage phiPSA1, complete genome) position: , mismatch: 6, identity: 0.8

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
gtaagaagcagcggcagccgtccggccagc	Protospacer
 *. * ******.******** ********

10. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to HM486077 (Tsukamurella phage TPA2, complete sequence) position: , mismatch: 6, identity: 0.8

ctgtg-cagcagcagcagccgtacggccagc	CRISPR spacer
-agcgccaccaccagcagccgtacggccacc	Protospacer
  *.* ** ** ***************** *

11. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to NC_015210 (Tsukamurella phage TPA2, complete genome) position: , mismatch: 6, identity: 0.8

ctgtg-cagcagcagcagccgtacggccagc	CRISPR spacer
-agcgccaccaccagcagccgtacggccacc	Protospacer
  *.* ** ** ***************** *

12. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to NZ_CP020568 (Kitasatospora aureofaciens strain DM-1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
gcctgcaccggcagcagccgtacggcccgg	Protospacer
 . **** *.***************** * 

13. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 7, identity: 0.767

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
atgtgcagcagcagcagcggtaccagccgt	Protospacer
 ***************** **** . * *.

14. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to NZ_CP032704 (Pantoea dispersa strain DSM 32899 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
ccgtgcagcagcagcagcggtacacggata	Protospacer
*.**************** ****.   *  

15. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to MK095605 (Pantoea phage vB_PagS_MED16, complete genome) position: , mismatch: 8, identity: 0.733

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
catcccgacagcagcagccgtaccgccaga	Protospacer
*  . *..*************** ***** 

16. spacer 1.1|948350|30|NZ_CP012677|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 9, identity: 0.7

ctgtgcagcagcagcagccgtacggccagc	CRISPR spacer
accagcagccgcagcagccgttcggcctcg	Protospacer
 .  ***** *********** *****   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1123696 : 1154521 36 Gordonia_phage(38.46%) tail,terminase,portal,transposase,integrase attL 1120714:1120736|attR 1125170:1125192
DBSCAN-SWA_2 2773990 : 2784758 9 uncultured_virus(28.57%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage