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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012715 Fusobacterium nucleatum subsp. animalis strain KCOM 1325 chromosome, complete genome 6 crisprs cas14j,c2c9_V-U4,DEDDh,DinG,PD-DExK,cas14k,WYL,cas4,csa3,cas3,cas6,cas8b1,cas7b,cas5,cas1,cas2 3 6 4 0

Results visualization

1. NZ_CP012715
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012715_1 160863-160948 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012715_2 204385-204485 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012715_3 821215-821611 Orphan NA
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012715_4 1679623-1679718 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012715_5 1831684-1831784 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012715_6 2303460-2303723 TypeI-B NA
3 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP012715_3 3.2|821276|23|NZ_CP012715|CRT 821276-821298 23 NZ_CP012715.1 821108-821130 0 1.0
NZ_CP012715_4 4.1|1679646|50|NZ_CP012715|CRISPRCasFinder 1679646-1679695 50 NZ_CP012715.1 306153-306202 0 1.0
NZ_CP012715_4 4.1|1679646|50|NZ_CP012715|CRISPRCasFinder 1679646-1679695 50 NZ_CP012715.1 2019747-2019796 0 1.0
NZ_CP012715_4 4.1|1679646|50|NZ_CP012715|CRISPRCasFinder 1679646-1679695 50 NZ_CP012715.1 2217992-2218041 0 1.0
NZ_CP012715_3 3.7|821486|23|NZ_CP012715|CRT 821486-821508 23 NZ_CP012715.1 821108-821130 1 0.957

1. spacer 3.2|821276|23|NZ_CP012715|CRT matches to position: 821108-821130, mismatch: 0, identity: 1.0

tatgctccactggctgtattacc	CRISPR spacer
tatgctccactggctgtattacc	Protospacer
***********************

2. spacer 4.1|1679646|50|NZ_CP012715|CRISPRCasFinder matches to position: 306153-306202, mismatch: 0, identity: 1.0

agcatagacctgtgtttttgttaaacagttgcttgagcctcttcactgcg	CRISPR spacer
agcatagacctgtgtttttgttaaacagttgcttgagcctcttcactgcg	Protospacer
**************************************************

3. spacer 4.1|1679646|50|NZ_CP012715|CRISPRCasFinder matches to position: 2019747-2019796, mismatch: 0, identity: 1.0

agcatagacctgtgtttttgttaaacagttgcttgagcctcttcactgcg	CRISPR spacer
agcatagacctgtgtttttgttaaacagttgcttgagcctcttcactgcg	Protospacer
**************************************************

4. spacer 4.1|1679646|50|NZ_CP012715|CRISPRCasFinder matches to position: 2217992-2218041, mismatch: 0, identity: 1.0

agcatagacctgtgtttttgttaaacagttgcttgagcctcttcactgcg	CRISPR spacer
agcatagacctgtgtttttgttaaacagttgcttgagcctcttcactgcg	Protospacer
**************************************************

5. spacer 3.7|821486|23|NZ_CP012715|CRT matches to position: 821108-821130, mismatch: 1, identity: 0.957

tatgctctactggctgtattacc	CRISPR spacer
tatgctccactggctgtattacc	Protospacer
*******.***************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012715_3 3.6|821444|23|NZ_CP012715|CRT 821444-821466 23 KY744240 Weissella phage PWc, complete genome 27115-27137 2 0.913
NZ_CP012715_3 3.8|821528|23|NZ_CP012715|CRT 821528-821550 23 MN693206 Marine virus AFVG_25M549, complete genome 11370-11392 2 0.913
NZ_CP012715_3 3.8|821528|23|NZ_CP012715|CRT 821528-821550 23 MN693298 Marine virus AFVG_25M546, complete genome 11380-11402 2 0.913
NZ_CP012715_3 3.8|821528|23|NZ_CP012715|CRT 821528-821550 23 NC_017296 Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence 136096-136118 2 0.913
NZ_CP012715_3 3.8|821528|23|NZ_CP012715|CRT 821528-821550 23 NC_015686 Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence 136096-136118 2 0.913
NZ_CP012715_3 3.8|821528|23|NZ_CP012715|CRT 821528-821550 23 NC_001988 Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence 136096-136118 2 0.913
NZ_CP012715_3 3.8|821528|23|NZ_CP012715|CRT 821528-821550 23 MN693248 Marine virus AFVG_25M547, complete genome 24834-24856 2 0.913
NZ_CP012715_3 3.8|821528|23|NZ_CP012715|CRT 821528-821550 23 MN693399 Marine virus AFVG_25M548, complete genome 24837-24859 2 0.913
NZ_CP012715_4 4.1|1679646|50|NZ_CP012715|CRISPRCasFinder 1679646-1679695 50 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 72885-72934 2 0.96
NZ_CP012715_4 4.1|1679646|50|NZ_CP012715|CRISPRCasFinder 1679646-1679695 50 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 938478-938527 2 0.96
NZ_CP012715_3 3.3|821318|23|NZ_CP012715|CRT 821318-821340 23 MN693940 Marine virus AFVG_250M588, complete genome 21862-21884 3 0.87
NZ_CP012715_3 3.6|821444|23|NZ_CP012715|CRT 821444-821466 23 NZ_CP053834 Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence 31226-31248 3 0.87
NZ_CP012715_3 3.7|821486|23|NZ_CP012715|CRT 821486-821508 23 NC_008043 Ruegeria sp. TM1040 megaplasmid, complete sequence 371652-371674 4 0.826
NZ_CP012715_6 6.3|2303658|35|NZ_CP012715|CRISPRCasFinder 2303658-2303692 35 NZ_CP039285 Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence 112667-112701 12 0.657
NZ_CP012715_6 6.3|2303658|35|NZ_CP012715|CRISPRCasFinder 2303658-2303692 35 NZ_CP039260 Leptospira interrogans strain FMAS_KW1 plasmid pLiLS1, complete sequence 1767-1801 12 0.657
NZ_CP012715_6 6.3|2303658|35|NZ_CP012715|CRISPRCasFinder 2303658-2303692 35 NZ_CP006725 Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence 2326-2360 12 0.657

1. spacer 3.6|821444|23|NZ_CP012715|CRT matches to KY744240 (Weissella phage PWc, complete genome) position: , mismatch: 2, identity: 0.913

cctaatccattagctttattttc	CRISPR spacer
cctaatcaattagcttaattttc	Protospacer
******* ******** ******

2. spacer 3.8|821528|23|NZ_CP012715|CRT matches to MN693206 (Marine virus AFVG_25M549, complete genome) position: , mismatch: 2, identity: 0.913

tgtttttcactagctttattttt	CRISPR spacer
tgtttttcagcagctttattttt	Protospacer
********* .************

3. spacer 3.8|821528|23|NZ_CP012715|CRT matches to MN693298 (Marine virus AFVG_25M546, complete genome) position: , mismatch: 2, identity: 0.913

tgtttttcactagctttattttt	CRISPR spacer
tgtttttcagcagctttattttt	Protospacer
********* .************

4. spacer 3.8|821528|23|NZ_CP012715|CRT matches to NC_017296 (Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence) position: , mismatch: 2, identity: 0.913

tgtttttcactagctttattttt	CRISPR spacer
tttttttcactagatttattttt	Protospacer
* *********** *********

5. spacer 3.8|821528|23|NZ_CP012715|CRT matches to NC_015686 (Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence) position: , mismatch: 2, identity: 0.913

tgtttttcactagctttattttt	CRISPR spacer
tttttttcactagatttattttt	Protospacer
* *********** *********

6. spacer 3.8|821528|23|NZ_CP012715|CRT matches to NC_001988 (Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence) position: , mismatch: 2, identity: 0.913

tgtttttcactagctttattttt	CRISPR spacer
tttttttcactagatttattttt	Protospacer
* *********** *********

7. spacer 3.8|821528|23|NZ_CP012715|CRT matches to MN693248 (Marine virus AFVG_25M547, complete genome) position: , mismatch: 2, identity: 0.913

tgtttttcactagctttattttt	CRISPR spacer
tgtttttcagcagctttattttt	Protospacer
********* .************

8. spacer 3.8|821528|23|NZ_CP012715|CRT matches to MN693399 (Marine virus AFVG_25M548, complete genome) position: , mismatch: 2, identity: 0.913

tgtttttcactagctttattttt	CRISPR spacer
tgtttttcagcagctttattttt	Protospacer
********* .************

9. spacer 4.1|1679646|50|NZ_CP012715|CRISPRCasFinder matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 2, identity: 0.96

agcatagacctgtgtttttgttaaacagttgcttgagcctcttcactgcg	CRISPR spacer
agcatagacctgtgtttttgctaaacagttgcttgagactcttcactgcg	Protospacer
********************.**************** ************

10. spacer 4.1|1679646|50|NZ_CP012715|CRISPRCasFinder matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 2, identity: 0.96

agcatagacctgtgtttttgttaaacagttgcttgagcctcttcactgcg	CRISPR spacer
agcatagacctgtgtttttgctaaacagttgcttgagactcttcactgcg	Protospacer
********************.**************** ************

11. spacer 3.3|821318|23|NZ_CP012715|CRT matches to MN693940 (Marine virus AFVG_250M588, complete genome) position: , mismatch: 3, identity: 0.87

tatttattttcagccttattact	CRISPR spacer
tatttatttccagccttattata	Protospacer
*********.***********. 

12. spacer 3.6|821444|23|NZ_CP012715|CRT matches to NZ_CP053834 (Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence) position: , mismatch: 3, identity: 0.87

cctaatccattagctttattttc	CRISPR spacer
gttaatccatttgctttattttc	Protospacer
 .********* ***********

13. spacer 3.7|821486|23|NZ_CP012715|CRT matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.826

tatgctctactggctgtattacc	CRISPR spacer
ctggctctactggctgtattacg	Protospacer
.  ******************* 

14. spacer 6.3|2303658|35|NZ_CP012715|CRISPRCasFinder matches to NZ_CP039285 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence) position: , mismatch: 12, identity: 0.657

aaaaatagaatatttttaaactttctaaaaatact	CRISPR spacer
cttgggagaatatttttgaacattctaaaaacctc	Protospacer
   .. ***********.*** *********. ..

15. spacer 6.3|2303658|35|NZ_CP012715|CRISPRCasFinder matches to NZ_CP039260 (Leptospira interrogans strain FMAS_KW1 plasmid pLiLS1, complete sequence) position: , mismatch: 12, identity: 0.657

aaaaatagaatatttttaaactttctaaaaatact	CRISPR spacer
cttgggagaatatttttgaacattctaaaaacctc	Protospacer
   .. ***********.*** *********. ..

16. spacer 6.3|2303658|35|NZ_CP012715|CRISPRCasFinder matches to NZ_CP006725 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence) position: , mismatch: 12, identity: 0.657

aaaaatagaatatttttaaactttctaaaaatact	CRISPR spacer
cctgggagaatatttttgaacattctaaaaacctc	Protospacer
   .. ***********.*** *********. ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 810120 : 817096 7 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 1378888 : 1430435 55 Clostridium_phage(27.78%) terminase,portal,tail,tRNA,plate,capsid NA
DBSCAN-SWA_3 1435186 : 1444207 8 Clostridium_phage(28.57%) NA NA
DBSCAN-SWA_4 1525703 : 1558370 43 Fusobacterium_phage(33.33%) transposase,integrase,holin,plate,capsid attL 1533962:1533977|attR 1558851:1558866
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage