Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019945 Staphylococcus aureus strain BA01611 chromosome, complete genome 8 crisprs csa3,cas3,DEDDh,DinG,WYL 3 3 14 0

Results visualization

1. NZ_CP019945
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019945_1 328694-328784 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019945_2 817954-818036 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019945_3 1117412-1117494 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019945_4 1704457-1704544 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019945_5 1834295-1834381 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019945_6 2002542-2002669 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019945_7 2288512-2288601 Orphan NA
1 spacers
csa3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019945_8 2300842-2300927 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 218963-218993 0 1.0
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 219021-219051 0 1.0
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 859155-859185 0 1.0
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 864589-864619 0 1.0
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 2083913-2083943 0 1.0
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 2596057-2596087 0 1.0
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 2596115-2596145 0 1.0
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 2596173-2596203 0 1.0
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 2596231-2596261 0 1.0
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 218957-218981 1 0.96
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 219015-219039 1 0.96
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 420399-420423 1 0.96
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 859167-859191 1 0.96
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 864601-864625 1 0.96
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 1436721-1436745 1 0.96
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 2083925-2083949 1 0.96
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 2389588-2389612 1 0.96
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 2596051-2596075 1 0.96
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 2596109-2596133 1 0.96
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 2596167-2596191 1 0.96
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 2596225-2596249 1 0.96
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 420405-420435 1 0.968
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 1021425-1021455 1 0.968
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 1436727-1436757 1 0.968
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 1525106-1525136 1 0.968
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 1739849-1739879 1 0.968
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 1740022-1740052 1 0.968
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 2389576-2389606 1 0.968
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 2672328-2672358 1 0.968
NZ_CP019945_4 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder 1704487-1704514 28 NZ_CP019945.1 420307-420334 1 0.964
NZ_CP019945_4 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder 1704487-1704514 28 NZ_CP019945.1 864521-864548 1 0.964
NZ_CP019945_4 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder 1704487-1704514 28 NZ_CP019945.1 871844-871871 1 0.964
NZ_CP019945_4 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder 1704487-1704514 28 NZ_CP019945.1 1001229-1001256 1 0.964
NZ_CP019945_4 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder 1704487-1704514 28 NZ_CP019945.1 1117483-1117510 1 0.964
NZ_CP019945_4 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder 1704487-1704514 28 NZ_CP019945.1 1220828-1220855 1 0.964
NZ_CP019945_4 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder 1704487-1704514 28 NZ_CP019945.1 1304637-1304664 1 0.964
NZ_CP019945_4 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder 1704487-1704514 28 NZ_CP019945.1 1525035-1525062 1 0.964
NZ_CP019945_4 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder 1704487-1704514 28 NZ_CP019945.1 2082558-2082585 1 0.964
NZ_CP019945_4 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder 1704487-1704514 28 NZ_CP019945.1 2093251-2093278 1 0.964
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 343946-343970 2 0.92
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 1021437-1021461 2 0.92
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 1220864-1220888 2 0.92
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 1220975-1220999 2 0.92
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 1441038-1441062 2 0.92
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 1525118-1525142 2 0.92
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 1739861-1739885 2 0.92
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 1740034-1740058 2 0.92
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 1836590-1836614 2 0.92
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 2182608-2182632 2 0.92
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 NZ_CP019945.1 2672340-2672364 2 0.92
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 1220870-1220900 2 0.935
NZ_CP019945_3 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder 1117438-1117468 31 NZ_CP019945.1 1220981-1221011 2 0.935

1. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 218963-218993, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

2. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 219021-219051, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

3. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 859155-859185, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

4. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 864589-864619, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

5. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 2083913-2083943, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

6. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 2596057-2596087, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

7. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 2596115-2596145, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

8. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 2596173-2596203, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

9. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 2596231-2596261, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

10. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 218957-218981, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

11. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 219015-219039, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

12. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 420399-420423, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctatgttg	Protospacer
******************* *****

13. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 859167-859191, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

14. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 864601-864625, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

15. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 1436721-1436745, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

16. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 2083925-2083949, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

17. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 2389588-2389612, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

18. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 2596051-2596075, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

19. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 2596109-2596133, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

20. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 2596167-2596191, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

21. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 2596225-2596249, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

22. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 420405-420435, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcttgtagaatttcttttcgaaattctct	Protospacer
****.**************************

23. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 1021425-1021455, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttagaaattctct	Protospacer
******************** **********

24. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 1436727-1436757, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttcttttcgaaattctct	Protospacer
***.***************************

25. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 1525106-1525136, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcatttcgaaattctct	Protospacer
**************** **************

26. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 1739849-1739879, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttctttacgaaattctct	Protospacer
******************* ***********

27. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 1740022-1740052, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttctttacgaaattctct	Protospacer
******************* ***********

28. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 2389576-2389606, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttcttttcgaaattctct	Protospacer
***.***************************

29. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 2672328-2672358, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcatttcgaaattctct	Protospacer
**************** **************

30. spacer 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder matches to position: 420307-420334, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

31. spacer 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder matches to position: 864521-864548, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattatcgtaagctga	Protospacer
****************** *********

32. spacer 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder matches to position: 871844-871871, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

33. spacer 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder matches to position: 1001229-1001256, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

34. spacer 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder matches to position: 1117483-1117510, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

35. spacer 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder matches to position: 1220828-1220855, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

36. spacer 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder matches to position: 1304637-1304664, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

37. spacer 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder matches to position: 1525035-1525062, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

38. spacer 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder matches to position: 2082558-2082585, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

39. spacer 4.1|1704487|28|NZ_CP019945|CRISPRCasFinder matches to position: 2093251-2093278, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

40. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 343946-343970, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctttgtgttg	Protospacer
*****************.* *****

41. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 1021437-1021461, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttagaaattctctgtgttg	Protospacer
******** ********** *****

42. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 1220864-1220888, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttttgaaattctctgtgttg	Protospacer
********.********** *****

43. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 1220975-1220999, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttttgaaattctctatgttg	Protospacer
********.********** *****

44. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 1441038-1441062, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttatcgaaattctctgtgttg	Protospacer
****** ************ *****

45. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 1525118-1525142, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcatttcgaaattctctgtgttg	Protospacer
**** ************** *****

46. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 1739861-1739885, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctgtgttg	Protospacer
******* *********** *****

47. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 1740034-1740058, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctatgttg	Protospacer
******* *********** *****

48. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 1836590-1836614, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctccatgttg	Protospacer
******************. *****

49. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 2182608-2182632, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctatgttg	Protospacer
******* *********** *****

50. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to position: 2672340-2672364, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcatttcgaaattctctgtgttg	Protospacer
**** ************** *****

51. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 1220870-1220900, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttctttttgaaattctct	Protospacer
***.****************.**********

52. spacer 3.1|1117438|31|NZ_CP019945|CRISPRCasFinder matches to position: 1220981-1221011, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttctttttgaaattctct	Protospacer
***.****************.**********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019945_1 1.1|328727|25|NZ_CP019945|CRISPRCasFinder 328727-328751 25 LC371242 Escherichia phage EcS1 DNA, complete sequence 15447-15471 2 0.92
NZ_CP019945_5 5.1|1834325|27|NZ_CP019945|CRISPRCasFinder 1834325-1834351 27 KM359505 Prochlorococcus phage P-TIM68, complete genome 102710-102736 5 0.815
NZ_CP019945_8 8.1|2300868|34|NZ_CP019945|CRISPRCasFinder 2300868-2300901 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP019945_8 8.1|2300868|34|NZ_CP019945|CRISPRCasFinder 2300868-2300901 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 1.1|328727|25|NZ_CP019945|CRISPRCasFinder matches to LC371242 (Escherichia phage EcS1 DNA, complete sequence) position: , mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctttttgttg	Protospacer
******* *********.*******

2. spacer 5.1|1834325|27|NZ_CP019945|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 5, identity: 0.815

gaatttcgaaaagaaattctacagacc	CRISPR spacer
ctatttccaaaagaaattatacagatc	Protospacer
  ***** ********** ******.*

3. spacer 8.1|2300868|34|NZ_CP019945|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

4. spacer 8.1|2300868|34|NZ_CP019945|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 12786 : 56019 38 Bacillus_phage(20.0%) protease,integrase,tRNA,transposase attL 34690:34749|attR 49286:53954
DBSCAN-SWA_2 74583 : 134615 61 Staphylococcus_phage(46.67%) integrase,tRNA,transposase attL 77118:77134|attR 132856:132872
DBSCAN-SWA_3 144141 : 151050 9 Streptococcus_phage(44.44%) transposase NA
DBSCAN-SWA_4 464977 : 474689 11 Staphylococcus_phage(37.5%) integrase attL 467996:468015|attR 481926:481945
DBSCAN-SWA_5 796118 : 803937 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_6 815909 : 830640 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_7 878219 : 932134 75 Staphylococcus_phage(83.33%) terminase,protease,tail,plate,transposase,portal,integrase,capsid,head,holin attL 877563:877580|attR 926673:926690
DBSCAN-SWA_8 1119003 : 1127476 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_9 1384384 : 1400390 27 Staphylococcus_phage(58.33%) portal,integrase,capsid,terminase attL 1378108:1378125|attR 1402377:1402394
DBSCAN-SWA_10 1676042 : 1684372 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_11 1755124 : 1764167 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_12 1909225 : 1944961 40 Staphylococcus_phage(90.91%) protease,transposase NA
DBSCAN-SWA_13 1996632 : 2072659 94 Staphylococcus_phage(84.72%) terminase,protease,tail,plate,tRNA,portal,capsid,integrase,head,holin attL 2029267:2029283|attR 2080188:2080204
DBSCAN-SWA_14 2093795 : 2158992 60 Staphylococcus_phage(47.06%) terminase,protease,tRNA,transposase,integrase attL 2129653:2129671|attR 2162570:2162588
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage