CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP012708	Psychrobacter urativorans strain R310.10B plasmid 2, complete sequence	0 crisprs	NA	0	0
NZ_CP012707	Psychrobacter urativorans strain R310.10B plasmid 1, complete sequence	0 crisprs	NA	0	0
NZ_CP012709	Psychrobacter urativorans strain R310.10B plasmid 3, complete sequence	1 crisprs	NA	1	0
NZ_CP012711	Psychrobacter urativorans strain R310.10B plasmid 5, complete sequence	0 crisprs	NA	0	0
NZ_CP012678	Psychrobacter urativorans strain R310.10B chromosome, complete genome	3 crisprs	cas1,csx16,DEDDh,cas3,csa3,WYL	3	1
NZ_CP012710	Psychrobacter urativorans strain R310.10B plasmid 4, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012678_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012678_1

240779-240882

Unclear

Consensus_repeat	Method
GTCTTAATCCCTTAGGAATCAGGGAGCGTTTCAGAC	CRISPRCasFinder

1 spacers

cas2,cas1,csx16

The CRISPR arrays of NZ_CP012678_1

>merge|NZ_CP012678|1|240779-240882|CRISPRCasFinder
GTCTTAATCCCTTAGGAATCAGGGAGCGTTTCAGACGTTTCAGATTTTTAATTGGGATGCTTTGAATTGTCTTAATCCCTTAGGAATCAGGGAGCGTTTCAGAC

>NZ_CP012678|1|1|240779-240882|CRISPRCasFinder
GTCTTAATCCCTTAGGAATCAGGGAGCGTTTCAGAC	GTTTCAGATTTTTAATTGGGATGCTTTGAATT
GTCTTAATCCCTTAGGAATCAGGGAGCGTTTCAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012678.1\|WP_062533196.1\|230748_232209_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NZ_CP012678.1\|WP_062533206.1\|241204_241495_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP012678.1\|WP_062533204.1\|237719_238190_+\|PACE-efflux-transporter	unknown	unknown	gnl\|CDD\|226610
NZ_CP012678.1\|WP_062533197.1\|232322_232919_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377032
NZ_CP012678.1\|WP_062533200.1\|234445_235117_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226582
NZ_CP012678.1\|WP_062533210.1\|244942_245455_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012678.1\|WP_084785727.1\|241545_242217_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP012678.1\|WP_062533208.1\|242266_242575_-\|CRISPR-associated-protein-Csx16	csx16	cd09743_csx16_CAS-I:CAS-III	gnl\|CDD\|370601
NZ_CP012678.1\|WP_062533209.1\|244088_244883_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012678.1\|WP_062533202.1\|236078_236687_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP012678.1\|WP_062533205.1\|238522_240205_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|237414
NZ_CP012678.1\|WP_062533214.1\|257832_258501_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012678.1\|WP_062533199.1\|233294_234443_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_CP012678.1\|WP_062533201.1\|235213_235912_+\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NZ_CP012678.1\|WP_062533203.1\|236850_237396_-\|DUF2058-domain-containing-protein	unknown	unknown	gnl\|CDD\|378260
NZ_CP012678.1\|WP_062533211.1\|245878_250240_+\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|335690
NZ_CP012678.1\|WP_062533212.1\|250338_254769_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273172
NZ_CP012678.1\|WP_062533213.1\|257178_257748_-\|hypoxanthine-guanine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181675
NZ_CP012678.1\|WP_084785728.1\|254815_257089_+\|exodeoxyribonuclease-V-subunit-alpha	unknown	unknown	gnl\|CDD\|273631
NZ_CP012678.1\|WP_062533198.1\|232911_233238_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP012678.1\|WP_062533196.1\|230748_232209_+\|sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	1.03106e-106
NZ_CP012678.1\|WP_062533206.1\|241204_241495_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	6.47881e-11
NZ_CP012678.1\|WP_062533204.1\|237719_238190_+\|PACE-efflux-transporter	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	4.12652e-31
NZ_CP012678.1\|WP_062533197.1\|232322_232919_+\|PepSY-domain-containing-protein	gnl\|CDD\|377032	pfam03413, PepSY, Peptidase propeptide and YPEB domain. This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.	0.00122345
NZ_CP012678.1\|WP_062533200.1\|234445_235117_+\|hypothetical-protein	gnl\|CDD\|226582	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism].	3.58549e-12
NZ_CP012678.1\|WP_084785727.1\|241545_242217_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.90387e-44
NZ_CP012678.1\|WP_062533208.1\|242266_242575_-\|CRISPR-associated-protein-Csx16	gnl\|CDD\|370601	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548). This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas (CRISPR-associated) genes.	3.33033e-30
NZ_CP012678.1\|WP_062533202.1\|236078_236687_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.2868e-44
NZ_CP012678.1\|WP_062533205.1\|238522_240205_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
NZ_CP012678.1\|WP_062533199.1\|233294_234443_+\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	8.04774e-46
NZ_CP012678.1\|WP_062533201.1\|235213_235912_+\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	3.13359e-97
NZ_CP012678.1\|WP_062533203.1\|236850_237396_-\|DUF2058-domain-containing-protein	gnl\|CDD\|378260	pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058). This domain, found in various prokaryotic proteins, has no known function.	9.45671e-63
NZ_CP012678.1\|WP_062533211.1\|245878_250240_+\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|335690	pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.	8.15083e-63
NZ_CP012678.1\|WP_062533212.1\|250338_254769_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273172	TIGR00609, RecBCD_enzyme_subunit_RecB, exodeoxyribonuclease V, beta subunit. The RecBCD holoenzyme is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.3612e-93
NZ_CP012678.1\|WP_062533213.1\|257178_257748_-\|hypoxanthine-guanine-phosphoribosyltransferase	gnl\|CDD\|181675	PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional.	2.0633e-104
NZ_CP012678.1\|WP_084785728.1\|254815_257089_+\|exodeoxyribonuclease-V-subunit-alpha	gnl\|CDD\|273631	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. [DNA metabolism, DNA replication, recombination, and repair].	2.1616e-102

>NZ_CP012678.1|WP_062533205.1|238522_240205_+|NAD-dependent-malic-enzyme
MQNKRPLYIPFAGPALLETPLLNKGSAFSLEERDSFNLTGLLPHNIETIEEQSLRAYHQLRSFTSDIDKHIYLRNIQDTNETLFHHLIEQHIEEVMPLIYTPTVGQACEKFSQIYRRKRGLFISYPERHKIDDMLQNATKQKVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAYCLPILLDVGTNNQQLLDDPMYMGWRNPRISGDEYNEFVDLFIQAVKRRWPEVLLQFEDFAQENATPLLNRYRDQLCCFNDDIQGTAAVSVGTLIAACLNKGQKLSEQRIAFLGAGSAGCGIAEHIVRQMQREGLTEEQARKQVFMVDRYGLLTDDMTELQAFQKPLVQKKSDLESWDKSQEFSLLQVVKQAKITVLFGVSGQKGLFTQEIVEALCVNTENPIVLPLSNPTSRIEATPQEVTNWSKGKAIVATGSPFPDTTFEGQSFEVSQCNNSYIFPGIGLGVLASRAKGISDNMLTAASQALADISIEYEKAPGAILPPIKFIREISEKIAYAVALQAVEDKLALPVTAENLERRLSSNFWLPKYRSYRRTSF
>NZ_CP012678.1|WP_062533204.1|237719_238190_+|PACE-efflux-transporter
MHLCALEFWLITLSPLKRRLVYVTIFEIIAIISSTFVLMLLSDSDAAASLPVAVMVSVVAVAWNFIYNTGFEAWERRRMLAQRTLIIRSIHALGFEGGLFLICLPLYMVWYDVSLTKAFTMEAVLLLFFLVYTFVFTLIFDKIFTLPYQYKTVSAS
>NZ_CP012678.1|WP_062533203.1|236850_237396_-|DUF2058-domain-containing-protein
MTKNALQAQLLKAGLVDSKKAKLLSKQSQHAKRTGDAENIEAKKALAAAQAKKIEKDQQLNQEKQQILEQKMLTANIIQMIKQHQITDTNGEVSYQFVDHSKVKKINITQKLYDQIVAGHVVIARLEENQTLTYALLPRPLADRINAKMEGFMVVSNDKLEVELADDDPYAAYVIPDDLMW
>NZ_CP012678.1|WP_062533202.1|236078_236687_+|DedA-family-protein
MNQISEWVLIIMEKFGYLGIIFAMFAENVFPPIPSELIMPAAGFAVARGDLNLIMVILAGTLGSVLGALPLYYLGRIFNKERLIIFTEKYGKYVFVKPEDILSSNDWFNKHGKKAVFFGRMVPGIRSLISIPAGMNQMPMLSFLALTALGSSIWTTLLTLAGYHFGKNYELIETILAPYSKIFLLLAVVIIIGWLVKRRLFH
>NZ_CP012678.1|WP_062533201.1|235213_235912_+|VIT-family-protein
MHHSIHDEVHLSNRNHWLRAAVLGANDGLISTSSLLVGIAAASPSSQTLLLTGMAALTAGALSMAAGEYISVSSQADTEKADLDKELYELTNNAERELFELTKIYEARGLDHVLAHQVAVALTEHDALEAHARDEIGLNDLSQAKPIHASVASALSFIVGAILPVIGILILPAQTLVWSLASLTVVGLILLGIISARLGGAPVIPATARVVIWGVLAMVATSLIGRLFGVAV
>NZ_CP012678.1|WP_062533200.1|234445_235117_+|hypothetical-protein
MNINNPTNSQTVFRTNLLTQTLWIGLILSIASYALLMWGETVSQLLTATDKNFWYLSRASGFIAYTLFWLAVVFGLLLSTRLGKHFNAARVFALHQYLSLIAVGFAAFHAGVLLADNFLNLNLWQVLLPFGFQTERVGVALGQLGFWLLFICAFSFYIKKYIGQSAWRWLHFLTFFAYMFISIHVFMVGSDSRALPLLLFYASSQTLVFLLMTYRLVALRQAK
>NZ_CP012678.1|WP_062533199.1|233294_234443_+|FAD:protein-FMN-transferase
MKINAPNKNIPELVSFNILAMGCQIQVNLNITSLSLLCSKIEIEQHTALLASDVQQKLTYWEHIFSRFDDSSELMRLNNHTDQWRDVSAELFEVLQRAIQFVPKTQGLVTPTLLQSLWAAGYKHSFETLPKLSMPTVPVIDPSATLNINSTAKESFQDTPVVNYDNQNIERIQLRRLADGQYQVYLPAGMALDLNGYVKGWCAMQLAEYISQIHDWQIPCLVDMGGDIAIGMPKHQGTDVAITPIAWGVAIAKPYIIDSKQKQVHDDEDVAILKIRSGAVATSGQDYRRWWYDGRWQHHLIHPHYSRPVTSDVLTATVLATDTMTAEVYAKYCVMLGLKAAMAWLNKNHIAALLIDFDNKVMATSALDPYLVKPNLIASIGA
>NZ_CP012678.1|WP_062533198.1|232911_233238_+|hypothetical-protein
MTNIKSHPTQAGNKPPNQTAKKADPFASLKSSIMIVSIAGTMGGWLLLLNQETDTTPVNTAMLSAVALEGSESAIEPMPIVDISQLRQVNEVAPVEPIAVVARTRSSR
>NZ_CP012678.1|WP_062533197.1|232322_232919_+|PepSY-domain-containing-protein
MSLPLLKPLLLTVGATSLVFFGGVIALSVQSPEPTNTVSASNIIAQKGDNTSTASELSSFKAVTNPLSQSAQTSSLAALTAEQAIAFAKQDAPDAILQATPELINYNGAVAYEVILDSGATYVDANLGAVLNPVGSNQSNPFGSEYDGYKDKHHDDKHDDKHKRDKHHSKKHDDKHDKESGRLITTSYQLQDEDNYDD
>NZ_CP012678.1|WP_062533196.1|230748_232209_+|sensor-histidine-kinase
MKSIQQRLLTSLLIGLPLLWVLTSGFIAWRLWHEIKEMNDTQITQVARYLIGVAPKEDDNKNDYEKDDSKSKKKRPAKIYNLNSKYLSGDLGNAKDDYMGFAIWNKDGRLLMADENGQSFAFLPDQHGFLEESDSAYQRLNPFSKRWRLFYVHDDHDSKHKGRVIAVGQNLDSRQEMIVSAMTVQVLPMLIGLLAFIGLVIWLIRRGFMPLTQISAELAQRQPQDDSPITADVPKEIQPLVTALNVLFVKVAETLAREQRFTADASHELRSPLAALKLQADLLQQQLLQLSDIEDDNQLFYHAQKISNGIERATHLVDQLLILAKIEPQQQLPPEQLEKPDWLILTDIVLSDVNRLGREKHIQLKRSVICDNPADILPILINPILFKLLIRNLLDNAIRYCPDGSLIELQLDTNAISVVDNGLGVEPEQLARLSERFYRPAGQSQLGSGLGLSIVNRIAELHGLTLIFANRLPPDIGFITSVILKK
>NZ_CP012678.1|WP_062533206.1|241204_241495_-|CRISPR-associated-endonuclease-Cas2
MSKICFIIAYDISNNKRLQRLQRTVSSHFFQLQYSIYYGTMTRQRMDAFIITMQQIIHPTDDDLRIYEVEPLEQAFVIGKHNDDIMMFSERGQLKL
>NZ_CP012678.1|WP_084785727.1|241545_242217_-|CRISPR-associated-endonuclease-Cas1
MLNTAFIDVNSNINCNTHTRNHAHTKSQTFHYHSWLPQYPVASILGTEGIGSALYFNAYQQFFADNLQFNSRNRRPPTDPVNVVLSLSYTLLQHICQQAVYSIGFDPYHGVLHSPSYGRQSLACDFTELQRASIDFWVWQLFEQNILTLDDFGFSSATGYPCKLLKSGRAKYYQAFAAIRAGLSKNALNHVWIWQRRLNSYHFHKDLTVKEPNLSFISQLPMT
>NZ_CP012678.1|WP_062533208.1|242266_242575_-|CRISPR-associated-protein-Csx16
MSIYLVSRHQGAVDWMRHMGHHYDEHLTHLANYEALSAGDVVVGSLPINIVADLADHGVTYWHLSLYIPEQLRGVELSAEQLSKLDAKLEEYVVLRGNSNAL
>NZ_CP012678.1|WP_062533209.1|244088_244883_-|hypothetical-protein
MKNYKRLLAGIIILLLIVLMGIFIWLWSSNRKNADPLPIMNSENQQLANELEDDINAIPASILQLQAEEKLQAALDDVITVFESRHPNVQVLARYVPTQSLLDLPDTSMSNHQPDSFMNADIIMTDKNIDQTQLSALQTVLDDAQNKRNKKQVNTNAIEQDNKHSININAETNNNEIRNLASFSYALKGKQAVDGVILTDNPIAVSFRNFLLSSAGQDVLSKYKYDNIDGYKNSVDDLFNPSSRTKNATGQPSVKIAEALSNGK
>NZ_CP012678.1|WP_062533210.1|244942_245455_-|hypothetical-protein
MPLRPIDAIFVHPKRRLYVVYYRGVLWQLPRMSINNAAWQRRQPYTDSPSELHLSHCQLIHDAVLAKKLYTLNLPTSLHGSTLLQFESWWDTNGFSWIKDQPTPSQSPLNADGNGDSAVIEADDLNHNTMHKISAPQTNKSPTNDKETETIDIFTGMLADLADEVRQSNT
>NZ_CP012678.1|WP_062533211.1|245878_250240_+|exodeoxyribonuclease-V-subunit-gamma
MFTIIQSHRTEILVEQLLSAYKSKNQPIFEEFIVIVPSMVLGEWLDKSIASQAGISTLVTTTFWGQYQWTLMQKVLAEYNTWLETMPSAQDILTVPEVAVLTGSVMQWRLFGYFTYYQTEIMANDAHPLYPLLSALLDGDADRSQQDIRLWSLATDFSRVFSRYLNHREAWLDLWSDNKAVDVEAMVAAKDELTIAFDKYAGKTPDWLVAHYTELEAAQRHLWHLLFAAVYKHRAAIETRFWQIMSGEVNNTEINLQALLPSHLHIFTIQQLPQNELDFLQRLSKYIDITLLHYNPSQLFWADIVDKQWLQRQQVINPESVFLRDYGHTLLSRLGKQSRETFAMLASLSGNEQHEGFELQWHDRFDVSDNINLAFDSHTESASSLSLLAHLQQDVLMLDESATQQATAGRVSAALGAQMALDLDDDTNNINSLSKNKADNKKKPKNIEPSENQWYSDDVLASKYNEQPRQWQLSQYDNSLSIHSCHNLQRQLEILRSMIGRWLNEPITKGKKRHLSDIVVLLPDVDRHHDLITSVFVNGKGQDGLTLPAKITGVVDKSIRQLWEAISGFYGLLGSETARFESAEVLDWLMLPPLYESLGLTHEQMRRGCDLLEQAGFVRGFDEAHLQYSLHTQDYDYRFSFAYALDQIALGLIMPEAGISDCLYPDNWKEDVLAEKTVPISSISLGDAPIVEALCRVHAGLNACRYEYQARYKAEDWLNRIESNIIHLYFGALDQTRPMRAIFNAMNGFKSSLRANRHYQRYHADSKNDVNIANDDVLAVGQVEAKLSQVSTLPLKLSFMLDSIEDELESQQVSAEPTGVITFGRFGALRNVPFGLVVMLNMDLSEFPNRDRDNRYDLMKAGLAKRGDRFSEDDDNGAFLDALLCARNACWIFYNGQRLTDTHEHLPANPVSELLQFLQGEIQWQWDPLKNAQKSFNIDNNLNSSAINDNNAALTAQVQRYLPKLIEQWLVTRHPALPFAEEVFITSEILSTQAATDSAEVSEQNFMQMLERAMQGEKLNQKQTNAPAKVWQDVFEHLQARDVENNQQPIKVNLPTKADYAVIAQRIQPNNDTNNDTDENFDVAHIDMQYLYLQVRHPARYFLKEQQVHIVLPAEDTVYQEPLSLSSLDAYTVNAQLLSGLYTATNDNSVVNENTNQQAAPINRLLYDPVMPAGVARQSTLNYQQLKITEQCREFSEELSSMGIQVNRHFTLDADDIDIESAEICLTLLTPCAEKMISVDAADMNIQGQINIKGSVPLALSAEKLSAEKSPELWLNILPNGARTQHLLRFWLAHVYWQVARRTTEAQVTANDGRSIWRFNKPSTEHAKYKGKTTFSLAPIAYETALAELLKWIRFAQIAGSTPMTILPMYAITYLDKVSDAQRKESVYQPKRGDFDSWLWSGYNSDMTYDTCSQHELWQYILQKQDGFTALTDALPVLAQPLFGAMNTALMPL
>NZ_CP012678.1|WP_062533212.1|250338_254769_+|UvrD-helicase-domain-containing-protein
MTQTMLKANNKNYNENNDFEPMEKTIETICQSYSAQQQPPAVRVPLHGKYLIEASAGTGKTWTLTGIVLRLLIEAKRAPEHIIATTFTRAAAAEMRERIHARLVDFHQLLQWFNKLQANSATHPILYPQLMASNVNQNKMSDVANNKDNEKLESSNKVTPEQRQTRQQWLEQQAKLAGYTDLMADPINSHLLSYLLDNTERYPLMEAIRRTALVLTTLDKLFVGTLDSLSQKWLSEYSAETGHQQGVQISDHEQVVIESIIHDKVRAFHSAMYNQQPEVYALLQHTKRLTSPVDHLSVAQKSIQFISTPIEEVELGATIDFDAYRQALEDFKNCDLKDIEPYFDLEYRTAQGFGKAGKVGKNIGAIGAIQQAIHQYGEVFFTHIEAQADVLYTELPNAFISKEEGGKVFNKGKEAERLAFINLKGISALKTLHDYTERLNLYLDSLIENLNRDIAIKVREKLPAILEARRETTFALQMVRLNQALSGKQGERLARYIRHHYPVALIDESQDINGEQARMIERIYIKQSSIKQYSKEDKDTHRGFLLLVGDPKQAIYGFRGGDVANYNAMKAHFDDKHMMSLDVNRRSNERLITALNHWFGRSQPITNADDKSESSTADALAQLGKGIYYQHITAVKRDEHLSWQPPVSQPCAMSPEVTAILPNNPVSIIHLPYNKEAKYNDCELTALHIAALLASQQTINGRPLKPSDIGVLGRRKHELKQVEDMLTKLGVPTLETSETNIFDTVIAADLVALLEAMLRPQRRDIINRVLTGHFYQLSLADVQALMLSADTDNIEAQHMDSEQATLKQGYKQNYKQSYQDFQTYLKTAANHWQHGGILSALHYVLGYNPMAKQGSHKSIWVGLAALEDGARYLMDLRHLLDILAQHGMHIGEYELLAWYKKNMNSKRIPEWAQQQPLPTESGVQLMTIHKSKGLEFPVVYVVGLDNASPKAGGRSKHNLFLYNHDVGTHELNNEINSNQTERRLSASAGKRHSKSAKGDISTDHYAQFETIENYEELRRLAYVAFTRASEQLYIVISDVYSSAGSERKPILQWLDGDNKDKTFTQPERLQAHTGWIEYGMIETNAETIIKVNNNLKMNSHSSVTRSNAMTLIDYQPAYDQLRNHQFKGWEKTSFTALSRQLDEQSQALAVFDDGVEDDFDLTDSIKLSQSRLSEDNQDMNESGSIMSADNIRFRFVKGANAGTFLHQVFEKIDFTNDNKWSAVIDQAIRQYQLPLIYTSAASQKRLQKNKMNVTLANNSAIVEELSDIEEAEIQLAAVHNELMAWIEDVLSAPLLASGQPLKAIAANKRIAELGFNMGLSDSFTPEAINEIFERHLPDEPEKHIQLTPQYSEHIYRYLRGEIDLVYEHAGKFHIVDYKSNYLGDSLSNYNNKNLKLAMNKTGYWLQAAIYQVALHRFLNLRINDYKNNEEQYLGAVEYVFLRGIDSQETHTYGRIQWQIPFALIQELDTLFGNANV
>NZ_CP012678.1|WP_084785728.1|254815_257089_+|exodeoxyribonuclease-V-subunit-alpha
MKNSQDLTQTDEKNSNTAKNKFSDSKKEQQILVINNQSKVESDVSNSWATTICQYLSQRRIQTKVAYQAQLQSNNIYDEDREPQDWLFDAIFEILIQRLEEGHTVLVLNDSDSNTSSSSKLYRWQQQLLQPLLQSLLIPTNGIVATIDFEILENIALWETLLLQTMLSEYEQKILRQRYSICVSLYHYFQYVYEHSKDITDSLNIFIKTIKSAQLFEIVNIKNEIINNPIVFQIENSLESNAVAKKNISITLWLHRTWQAEYDLARHIIRIKQQTINELPIVLSPLLNAEQKAAIHMANRSAFSIITGGPGTGKTFTVAQLVIALQQAQNDNEVGSVSSHANLALAAPTGKAAQRMQESLQDAIQHAGVTMQLPEAKTIHRLLGIGQGGRPRYNTANPLSEDIVIVDEASMLGVEMANYLVSAIKPNARLILLGDANQLAAVDAGAVLADLCRIPVLQDIHKRLDVSRRFTTESGIGKLASLINSSITDMPAVWKLMQDEETLSFYQLSNHLSEPLSEKEIAVTNDNSINTFSTLKVLKILLEKYSHYINDSKKILIETNTLKSPSTAQYMTYFKELMTVLNTFKVLTAGHNGRCGDHYINRYLSEQHKEQLKLPLSKSPWYHGRPVMILQNNYELGLFNGDIGICLQTERGILQVFFENKIQGIAVNMFSDDMIATAYAMTIHKSQGSEFEHVAISFDDNNARLLSQELIYTAVTRAKKQVTIFSTTSAFTRALSTPTVRQTGLGLQFANLDSVTE
>NZ_CP012678.1|WP_062533213.1|257178_257748_-|hypoxanthine-guanine-phosphoribosyltransferase
MTQISNQEIEKTLRNSECIISSIEVAAAYERLAAQLNLHYAGLNPIVMVVMNGGLIPAGQLLTHLTFYHRMHYIHASRYRDNQGTNELDWKFKPDVNIAGEHVLLIDDIFDEGITLKAIVEELGKEQPASIETCVLLNKEHDRKVVGFDVDFVGINVADRYVYGCGMDFHGYLRHLPGIYAIKENKVSA
>NZ_CP012678.1|WP_062533214.1|257832_258501_-|hypothetical-protein
MAYYFGFIPSDKLSSMIDEAESIITTNEAVDYYPYRNALTQQIARELNDNLLVSLIDVIPNPERQESMRKIVNTIERTTETLLNVLLGKDTNKDVIPSFNFLKDKSIFIDNQGVRRVGFKLSESSAQTINEGFAAITPDNVDRSQFKIALETMTDESLTHFMSRFTETLKLGMIKRKSVPVAKAAIDKGMSMALNKLLPQLPNAGLNRLAIFYRPYLIQLDD

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Crispr_ID: NZ_CP012678_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012678_2

242954-243207

Unclear

Consensus_repeat	Method
TTCTACAGTCTGAAAGCCTCCCTGATTATTAAGGGATTAAGACT	PILER-CR
AGTCTGAAAGCCTCCCTGATTATTAAGGGATTAAGAC	CRT
AAAGCCTCCCTGATTATTAAGGGATTAAGAC	CRISPRCasFinder

3 spacers

csx16,cas1,cas2

The CRISPR arrays of NZ_CP012678_2

>merge|NZ_CP012678|2|242954-243207|PILER-CR,CRT,CRISPRCasFinder
TTGTACAGTTTGAAAGCCTCCCTGATTATTAAGGGATTAAGACTCTAAATATTTGCCATTACTGATAGTATGTAAGATGTCTAAAAGCCTCCCTGATTATTAAGGGATTAAGACATCACAAGTTCTAGATTAGAAAGAGTTTCTACAGTCTGAAAGCCTCCCTGATTATTAAGGGATTAAGACTAATAATATCCTATGATATAATTAGTAAGTTGTAGTCTGAAAGTCTCCCTGATTATTAAGGTGAGCGCGGA

>NZ_CP012678|2|1|242954-243137|PILER-CR
TTGTACAGTTTGAAAGCCTCCCTGATTATTAAGGGATTAAGACT	CTAAATATTTGCCATTACTGATAGTATGTAAGAT
GTCTAAAAGCCTCCCTGATTATTAAGGGATTAAGACATCACAAG	TTCTAGATTAGAAAGAGTTTCTACA
GTCTGAAAGCCTCCCTGATTATTAAGGGATTAAGACT

>NZ_CP012678|2|1|242960-243206|CRT
AGTTTGAAAGCCTCCCTGATTATTAAGGGATTAAGAC	TCTAAATATTTGCCATTACTGATAGTATGTAAGA
TGTCTAAAAGCCTCCCTGATTATTAAGGGATTAAGAC	ATCACAAGTTCTAGATTAGAAAGAGTTTCTAC
AGTCTGAAAGCCTCCCTGATTATTAAGGGATTAAGAC	TAATAATATCCTATGATATAATTAGTAAGTTGT
AGTCTGAAAGTCTCCCTGATTATTAAGGTGAGCGCGG

>NZ_CP012678|2|2|242966-243207|CRISPRCasFinder
AAAGCCTCCCTGATTATTAAGGGATTAAGAC	TCTAAATATTTGCCATTACTGATAGTATGTAAGATGTCTA
AAAGCCTCCCTGATTATTAAGGGATTAAGAC	ATCACAAGTTCTAGATTAGAAAGAGTTTCTACAGTCTG
AAAGCCTCCCTGATTATTAAGGGATTAAGAC	TAATAATATCCTATGATATAATTAGTAAGTTGTAGTCTG
AAAGTCTCCCTGATTATTAAGGTGAGCGCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012678.1\|WP_062533215.1\|258668_260201_-\|DUF3482-domain-containing-protein	unknown	unknown	gnl\|CDD\|371831
NZ_CP012678.1\|WP_062533206.1\|241204_241495_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP012678.1\|WP_062533204.1\|237719_238190_+\|PACE-efflux-transporter	unknown	unknown	gnl\|CDD\|226610
NZ_CP012678.1\|WP_062533199.1\|233294_234443_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_CP012678.1\|WP_062533217.1\|262466_263954_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP012678.1\|WP_062533200.1\|234445_235117_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226582
NZ_CP012678.1\|WP_062533210.1\|244942_245455_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012678.1\|WP_084785727.1\|241545_242217_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP012678.1\|WP_062533208.1\|242266_242575_-\|CRISPR-associated-protein-Csx16	csx16	cd09743_csx16_CAS-I:CAS-III	gnl\|CDD\|370601
NZ_CP012678.1\|WP_062533209.1\|244088_244883_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012678.1\|WP_062533202.1\|236078_236687_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP012678.1\|WP_062533205.1\|238522_240205_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|237414
NZ_CP012678.1\|WP_062533214.1\|257832_258501_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012678.1\|WP_062533201.1\|235213_235912_+\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NZ_CP012678.1\|WP_062533203.1\|236850_237396_-\|DUF2058-domain-containing-protein	unknown	unknown	gnl\|CDD\|378260
NZ_CP012678.1\|WP_062533211.1\|245878_250240_+\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|335690
NZ_CP012678.1\|WP_062533212.1\|250338_254769_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273172
NZ_CP012678.1\|WP_062533213.1\|257178_257748_-\|hypoxanthine-guanine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181675
NZ_CP012678.1\|WP_062533216.1\|260454_261858_-\|DUF2868-domain-containing-protein	unknown	unknown	gnl\|CDD\|378549
NZ_CP012678.1\|WP_084785728.1\|254815_257089_+\|exodeoxyribonuclease-V-subunit-alpha	unknown	unknown	gnl\|CDD\|273631

Protein	Function_ID	Function_description	E-value
NZ_CP012678.1\|WP_062533215.1\|258668_260201_-\|DUF3482-domain-containing-protein	gnl\|CDD\|371831	pfam11981, DUF3482, Domain of unknown function (DUF3482). This presumed domain is functionally uncharacterized. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with pfam01926. The central region of these proteins contains a hydrophobic region that is similar to pfam05433.	3.31815e-96
NZ_CP012678.1\|WP_062533206.1\|241204_241495_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	6.47881e-11
NZ_CP012678.1\|WP_062533204.1\|237719_238190_+\|PACE-efflux-transporter	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	4.12652e-31
NZ_CP012678.1\|WP_062533199.1\|233294_234443_+\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	8.04774e-46
NZ_CP012678.1\|WP_062533217.1\|262466_263954_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.30439e-169
NZ_CP012678.1\|WP_062533200.1\|234445_235117_+\|hypothetical-protein	gnl\|CDD\|226582	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism].	3.58549e-12
NZ_CP012678.1\|WP_084785727.1\|241545_242217_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.90387e-44
NZ_CP012678.1\|WP_062533208.1\|242266_242575_-\|CRISPR-associated-protein-Csx16	gnl\|CDD\|370601	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548). This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas (CRISPR-associated) genes.	3.33033e-30
NZ_CP012678.1\|WP_062533202.1\|236078_236687_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.2868e-44
NZ_CP012678.1\|WP_062533205.1\|238522_240205_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
NZ_CP012678.1\|WP_062533201.1\|235213_235912_+\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	3.13359e-97
NZ_CP012678.1\|WP_062533203.1\|236850_237396_-\|DUF2058-domain-containing-protein	gnl\|CDD\|378260	pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058). This domain, found in various prokaryotic proteins, has no known function.	9.45671e-63
NZ_CP012678.1\|WP_062533211.1\|245878_250240_+\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|335690	pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.	8.15083e-63
NZ_CP012678.1\|WP_062533212.1\|250338_254769_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273172	TIGR00609, RecBCD_enzyme_subunit_RecB, exodeoxyribonuclease V, beta subunit. The RecBCD holoenzyme is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.3612e-93
NZ_CP012678.1\|WP_062533213.1\|257178_257748_-\|hypoxanthine-guanine-phosphoribosyltransferase	gnl\|CDD\|181675	PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional.	2.0633e-104
NZ_CP012678.1\|WP_062533216.1\|260454_261858_-\|DUF2868-domain-containing-protein	gnl\|CDD\|378549	pfam11067, DUF2868, Protein of unknown function (DUF2868). Some members in this family of proteins with unknown function are annotated as putative membrane proteins. However, this cannot be confirmed.	2.32325e-80
NZ_CP012678.1\|WP_084785728.1\|254815_257089_+\|exodeoxyribonuclease-V-subunit-alpha	gnl\|CDD\|273631	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. [DNA metabolism, DNA replication, recombination, and repair].	2.1616e-102

>NZ_CP012678.1|WP_062533208.1|242266_242575_-|CRISPR-associated-protein-Csx16
MSIYLVSRHQGAVDWMRHMGHHYDEHLTHLANYEALSAGDVVVGSLPINIVADLADHGVTYWHLSLYIPEQLRGVELSAEQLSKLDAKLEEYVVLRGNSNAL
>NZ_CP012678.1|WP_084785727.1|241545_242217_-|CRISPR-associated-endonuclease-Cas1
MLNTAFIDVNSNINCNTHTRNHAHTKSQTFHYHSWLPQYPVASILGTEGIGSALYFNAYQQFFADNLQFNSRNRRPPTDPVNVVLSLSYTLLQHICQQAVYSIGFDPYHGVLHSPSYGRQSLACDFTELQRASIDFWVWQLFEQNILTLDDFGFSSATGYPCKLLKSGRAKYYQAFAAIRAGLSKNALNHVWIWQRRLNSYHFHKDLTVKEPNLSFISQLPMT
>NZ_CP012678.1|WP_062533206.1|241204_241495_-|CRISPR-associated-endonuclease-Cas2
MSKICFIIAYDISNNKRLQRLQRTVSSHFFQLQYSIYYGTMTRQRMDAFIITMQQIIHPTDDDLRIYEVEPLEQAFVIGKHNDDIMMFSERGQLKL
>NZ_CP012678.1|WP_062533205.1|238522_240205_+|NAD-dependent-malic-enzyme
MQNKRPLYIPFAGPALLETPLLNKGSAFSLEERDSFNLTGLLPHNIETIEEQSLRAYHQLRSFTSDIDKHIYLRNIQDTNETLFHHLIEQHIEEVMPLIYTPTVGQACEKFSQIYRRKRGLFISYPERHKIDDMLQNATKQKVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAYCLPILLDVGTNNQQLLDDPMYMGWRNPRISGDEYNEFVDLFIQAVKRRWPEVLLQFEDFAQENATPLLNRYRDQLCCFNDDIQGTAAVSVGTLIAACLNKGQKLSEQRIAFLGAGSAGCGIAEHIVRQMQREGLTEEQARKQVFMVDRYGLLTDDMTELQAFQKPLVQKKSDLESWDKSQEFSLLQVVKQAKITVLFGVSGQKGLFTQEIVEALCVNTENPIVLPLSNPTSRIEATPQEVTNWSKGKAIVATGSPFPDTTFEGQSFEVSQCNNSYIFPGIGLGVLASRAKGISDNMLTAASQALADISIEYEKAPGAILPPIKFIREISEKIAYAVALQAVEDKLALPVTAENLERRLSSNFWLPKYRSYRRTSF
>NZ_CP012678.1|WP_062533204.1|237719_238190_+|PACE-efflux-transporter
MHLCALEFWLITLSPLKRRLVYVTIFEIIAIISSTFVLMLLSDSDAAASLPVAVMVSVVAVAWNFIYNTGFEAWERRRMLAQRTLIIRSIHALGFEGGLFLICLPLYMVWYDVSLTKAFTMEAVLLLFFLVYTFVFTLIFDKIFTLPYQYKTVSAS
>NZ_CP012678.1|WP_062533203.1|236850_237396_-|DUF2058-domain-containing-protein
MTKNALQAQLLKAGLVDSKKAKLLSKQSQHAKRTGDAENIEAKKALAAAQAKKIEKDQQLNQEKQQILEQKMLTANIIQMIKQHQITDTNGEVSYQFVDHSKVKKINITQKLYDQIVAGHVVIARLEENQTLTYALLPRPLADRINAKMEGFMVVSNDKLEVELADDDPYAAYVIPDDLMW
>NZ_CP012678.1|WP_062533202.1|236078_236687_+|DedA-family-protein
MNQISEWVLIIMEKFGYLGIIFAMFAENVFPPIPSELIMPAAGFAVARGDLNLIMVILAGTLGSVLGALPLYYLGRIFNKERLIIFTEKYGKYVFVKPEDILSSNDWFNKHGKKAVFFGRMVPGIRSLISIPAGMNQMPMLSFLALTALGSSIWTTLLTLAGYHFGKNYELIETILAPYSKIFLLLAVVIIIGWLVKRRLFH
>NZ_CP012678.1|WP_062533201.1|235213_235912_+|VIT-family-protein
MHHSIHDEVHLSNRNHWLRAAVLGANDGLISTSSLLVGIAAASPSSQTLLLTGMAALTAGALSMAAGEYISVSSQADTEKADLDKELYELTNNAERELFELTKIYEARGLDHVLAHQVAVALTEHDALEAHARDEIGLNDLSQAKPIHASVASALSFIVGAILPVIGILILPAQTLVWSLASLTVVGLILLGIISARLGGAPVIPATARVVIWGVLAMVATSLIGRLFGVAV
>NZ_CP012678.1|WP_062533200.1|234445_235117_+|hypothetical-protein
MNINNPTNSQTVFRTNLLTQTLWIGLILSIASYALLMWGETVSQLLTATDKNFWYLSRASGFIAYTLFWLAVVFGLLLSTRLGKHFNAARVFALHQYLSLIAVGFAAFHAGVLLADNFLNLNLWQVLLPFGFQTERVGVALGQLGFWLLFICAFSFYIKKYIGQSAWRWLHFLTFFAYMFISIHVFMVGSDSRALPLLLFYASSQTLVFLLMTYRLVALRQAK
>NZ_CP012678.1|WP_062533199.1|233294_234443_+|FAD:protein-FMN-transferase
MKINAPNKNIPELVSFNILAMGCQIQVNLNITSLSLLCSKIEIEQHTALLASDVQQKLTYWEHIFSRFDDSSELMRLNNHTDQWRDVSAELFEVLQRAIQFVPKTQGLVTPTLLQSLWAAGYKHSFETLPKLSMPTVPVIDPSATLNINSTAKESFQDTPVVNYDNQNIERIQLRRLADGQYQVYLPAGMALDLNGYVKGWCAMQLAEYISQIHDWQIPCLVDMGGDIAIGMPKHQGTDVAITPIAWGVAIAKPYIIDSKQKQVHDDEDVAILKIRSGAVATSGQDYRRWWYDGRWQHHLIHPHYSRPVTSDVLTATVLATDTMTAEVYAKYCVMLGLKAAMAWLNKNHIAALLIDFDNKVMATSALDPYLVKPNLIASIGA
>NZ_CP012678.1|WP_062533209.1|244088_244883_-|hypothetical-protein
MKNYKRLLAGIIILLLIVLMGIFIWLWSSNRKNADPLPIMNSENQQLANELEDDINAIPASILQLQAEEKLQAALDDVITVFESRHPNVQVLARYVPTQSLLDLPDTSMSNHQPDSFMNADIIMTDKNIDQTQLSALQTVLDDAQNKRNKKQVNTNAIEQDNKHSININAETNNNEIRNLASFSYALKGKQAVDGVILTDNPIAVSFRNFLLSSAGQDVLSKYKYDNIDGYKNSVDDLFNPSSRTKNATGQPSVKIAEALSNGK
>NZ_CP012678.1|WP_062533210.1|244942_245455_-|hypothetical-protein
MPLRPIDAIFVHPKRRLYVVYYRGVLWQLPRMSINNAAWQRRQPYTDSPSELHLSHCQLIHDAVLAKKLYTLNLPTSLHGSTLLQFESWWDTNGFSWIKDQPTPSQSPLNADGNGDSAVIEADDLNHNTMHKISAPQTNKSPTNDKETETIDIFTGMLADLADEVRQSNT
>NZ_CP012678.1|WP_062533211.1|245878_250240_+|exodeoxyribonuclease-V-subunit-gamma
MFTIIQSHRTEILVEQLLSAYKSKNQPIFEEFIVIVPSMVLGEWLDKSIASQAGISTLVTTTFWGQYQWTLMQKVLAEYNTWLETMPSAQDILTVPEVAVLTGSVMQWRLFGYFTYYQTEIMANDAHPLYPLLSALLDGDADRSQQDIRLWSLATDFSRVFSRYLNHREAWLDLWSDNKAVDVEAMVAAKDELTIAFDKYAGKTPDWLVAHYTELEAAQRHLWHLLFAAVYKHRAAIETRFWQIMSGEVNNTEINLQALLPSHLHIFTIQQLPQNELDFLQRLSKYIDITLLHYNPSQLFWADIVDKQWLQRQQVINPESVFLRDYGHTLLSRLGKQSRETFAMLASLSGNEQHEGFELQWHDRFDVSDNINLAFDSHTESASSLSLLAHLQQDVLMLDESATQQATAGRVSAALGAQMALDLDDDTNNINSLSKNKADNKKKPKNIEPSENQWYSDDVLASKYNEQPRQWQLSQYDNSLSIHSCHNLQRQLEILRSMIGRWLNEPITKGKKRHLSDIVVLLPDVDRHHDLITSVFVNGKGQDGLTLPAKITGVVDKSIRQLWEAISGFYGLLGSETARFESAEVLDWLMLPPLYESLGLTHEQMRRGCDLLEQAGFVRGFDEAHLQYSLHTQDYDYRFSFAYALDQIALGLIMPEAGISDCLYPDNWKEDVLAEKTVPISSISLGDAPIVEALCRVHAGLNACRYEYQARYKAEDWLNRIESNIIHLYFGALDQTRPMRAIFNAMNGFKSSLRANRHYQRYHADSKNDVNIANDDVLAVGQVEAKLSQVSTLPLKLSFMLDSIEDELESQQVSAEPTGVITFGRFGALRNVPFGLVVMLNMDLSEFPNRDRDNRYDLMKAGLAKRGDRFSEDDDNGAFLDALLCARNACWIFYNGQRLTDTHEHLPANPVSELLQFLQGEIQWQWDPLKNAQKSFNIDNNLNSSAINDNNAALTAQVQRYLPKLIEQWLVTRHPALPFAEEVFITSEILSTQAATDSAEVSEQNFMQMLERAMQGEKLNQKQTNAPAKVWQDVFEHLQARDVENNQQPIKVNLPTKADYAVIAQRIQPNNDTNNDTDENFDVAHIDMQYLYLQVRHPARYFLKEQQVHIVLPAEDTVYQEPLSLSSLDAYTVNAQLLSGLYTATNDNSVVNENTNQQAAPINRLLYDPVMPAGVARQSTLNYQQLKITEQCREFSEELSSMGIQVNRHFTLDADDIDIESAEICLTLLTPCAEKMISVDAADMNIQGQINIKGSVPLALSAEKLSAEKSPELWLNILPNGARTQHLLRFWLAHVYWQVARRTTEAQVTANDGRSIWRFNKPSTEHAKYKGKTTFSLAPIAYETALAELLKWIRFAQIAGSTPMTILPMYAITYLDKVSDAQRKESVYQPKRGDFDSWLWSGYNSDMTYDTCSQHELWQYILQKQDGFTALTDALPVLAQPLFGAMNTALMPL
>NZ_CP012678.1|WP_062533212.1|250338_254769_+|UvrD-helicase-domain-containing-protein
MTQTMLKANNKNYNENNDFEPMEKTIETICQSYSAQQQPPAVRVPLHGKYLIEASAGTGKTWTLTGIVLRLLIEAKRAPEHIIATTFTRAAAAEMRERIHARLVDFHQLLQWFNKLQANSATHPILYPQLMASNVNQNKMSDVANNKDNEKLESSNKVTPEQRQTRQQWLEQQAKLAGYTDLMADPINSHLLSYLLDNTERYPLMEAIRRTALVLTTLDKLFVGTLDSLSQKWLSEYSAETGHQQGVQISDHEQVVIESIIHDKVRAFHSAMYNQQPEVYALLQHTKRLTSPVDHLSVAQKSIQFISTPIEEVELGATIDFDAYRQALEDFKNCDLKDIEPYFDLEYRTAQGFGKAGKVGKNIGAIGAIQQAIHQYGEVFFTHIEAQADVLYTELPNAFISKEEGGKVFNKGKEAERLAFINLKGISALKTLHDYTERLNLYLDSLIENLNRDIAIKVREKLPAILEARRETTFALQMVRLNQALSGKQGERLARYIRHHYPVALIDESQDINGEQARMIERIYIKQSSIKQYSKEDKDTHRGFLLLVGDPKQAIYGFRGGDVANYNAMKAHFDDKHMMSLDVNRRSNERLITALNHWFGRSQPITNADDKSESSTADALAQLGKGIYYQHITAVKRDEHLSWQPPVSQPCAMSPEVTAILPNNPVSIIHLPYNKEAKYNDCELTALHIAALLASQQTINGRPLKPSDIGVLGRRKHELKQVEDMLTKLGVPTLETSETNIFDTVIAADLVALLEAMLRPQRRDIINRVLTGHFYQLSLADVQALMLSADTDNIEAQHMDSEQATLKQGYKQNYKQSYQDFQTYLKTAANHWQHGGILSALHYVLGYNPMAKQGSHKSIWVGLAALEDGARYLMDLRHLLDILAQHGMHIGEYELLAWYKKNMNSKRIPEWAQQQPLPTESGVQLMTIHKSKGLEFPVVYVVGLDNASPKAGGRSKHNLFLYNHDVGTHELNNEINSNQTERRLSASAGKRHSKSAKGDISTDHYAQFETIENYEELRRLAYVAFTRASEQLYIVISDVYSSAGSERKPILQWLDGDNKDKTFTQPERLQAHTGWIEYGMIETNAETIIKVNNNLKMNSHSSVTRSNAMTLIDYQPAYDQLRNHQFKGWEKTSFTALSRQLDEQSQALAVFDDGVEDDFDLTDSIKLSQSRLSEDNQDMNESGSIMSADNIRFRFVKGANAGTFLHQVFEKIDFTNDNKWSAVIDQAIRQYQLPLIYTSAASQKRLQKNKMNVTLANNSAIVEELSDIEEAEIQLAAVHNELMAWIEDVLSAPLLASGQPLKAIAANKRIAELGFNMGLSDSFTPEAINEIFERHLPDEPEKHIQLTPQYSEHIYRYLRGEIDLVYEHAGKFHIVDYKSNYLGDSLSNYNNKNLKLAMNKTGYWLQAAIYQVALHRFLNLRINDYKNNEEQYLGAVEYVFLRGIDSQETHTYGRIQWQIPFALIQELDTLFGNANV
>NZ_CP012678.1|WP_084785728.1|254815_257089_+|exodeoxyribonuclease-V-subunit-alpha
MKNSQDLTQTDEKNSNTAKNKFSDSKKEQQILVINNQSKVESDVSNSWATTICQYLSQRRIQTKVAYQAQLQSNNIYDEDREPQDWLFDAIFEILIQRLEEGHTVLVLNDSDSNTSSSSKLYRWQQQLLQPLLQSLLIPTNGIVATIDFEILENIALWETLLLQTMLSEYEQKILRQRYSICVSLYHYFQYVYEHSKDITDSLNIFIKTIKSAQLFEIVNIKNEIINNPIVFQIENSLESNAVAKKNISITLWLHRTWQAEYDLARHIIRIKQQTINELPIVLSPLLNAEQKAAIHMANRSAFSIITGGPGTGKTFTVAQLVIALQQAQNDNEVGSVSSHANLALAAPTGKAAQRMQESLQDAIQHAGVTMQLPEAKTIHRLLGIGQGGRPRYNTANPLSEDIVIVDEASMLGVEMANYLVSAIKPNARLILLGDANQLAAVDAGAVLADLCRIPVLQDIHKRLDVSRRFTTESGIGKLASLINSSITDMPAVWKLMQDEETLSFYQLSNHLSEPLSEKEIAVTNDNSINTFSTLKVLKILLEKYSHYINDSKKILIETNTLKSPSTAQYMTYFKELMTVLNTFKVLTAGHNGRCGDHYINRYLSEQHKEQLKLPLSKSPWYHGRPVMILQNNYELGLFNGDIGICLQTERGILQVFFENKIQGIAVNMFSDDMIATAYAMTIHKSQGSEFEHVAISFDDNNARLLSQELIYTAVTRAKKQVTIFSTTSAFTRALSTPTVRQTGLGLQFANLDSVTE
>NZ_CP012678.1|WP_062533213.1|257178_257748_-|hypoxanthine-guanine-phosphoribosyltransferase
MTQISNQEIEKTLRNSECIISSIEVAAAYERLAAQLNLHYAGLNPIVMVVMNGGLIPAGQLLTHLTFYHRMHYIHASRYRDNQGTNELDWKFKPDVNIAGEHVLLIDDIFDEGITLKAIVEELGKEQPASIETCVLLNKEHDRKVVGFDVDFVGINVADRYVYGCGMDFHGYLRHLPGIYAIKENKVSA
>NZ_CP012678.1|WP_062533214.1|257832_258501_-|hypothetical-protein
MAYYFGFIPSDKLSSMIDEAESIITTNEAVDYYPYRNALTQQIARELNDNLLVSLIDVIPNPERQESMRKIVNTIERTTETLLNVLLGKDTNKDVIPSFNFLKDKSIFIDNQGVRRVGFKLSESSAQTINEGFAAITPDNVDRSQFKIALETMTDESLTHFMSRFTETLKLGMIKRKSVPVAKAAIDKGMSMALNKLLPQLPNAGLNRLAIFYRPYLIQLDD
>NZ_CP012678.1|WP_062533215.1|258668_260201_-|DUF3482-domain-containing-protein
MNQDNNNNSYMSKQPTRLLEENAYLDVTPQSARAKTTIGSGEPLKLAVVGHTNTGKTSILRTLLRDVYFGEVKNEAATTRHVERAQLIDSQTGDVLVALYDTPGLEDASGLMDWLEDNTASRRDGIERLQQFLAADIASGATASYSSEHEDYSQEAKVIRQLLASDMAVYVIDAREPVLGKYKDELAILSWAAIPVMPVFNFTDSQDGNIDAWQTMLARRNLHISTRFDSVAFEFSDEMRLWQNLATMLTHAEMLEQLMQRRTEDWALLYDDANIIIADFLLNVAAFVREINDDDDPMPILQQMQEAVRQSERAMQHQLLNSYKFYDNAVAATPLELKAYQQDPFDAELLKSYGIRTTSGAAAGALLGLGIDAAALGTTLGLGTALGGIAGGLLSNTGSIADRLSGVKRLYIDPATLTLLATRAIDLHMALRHRGHAATDATQMSYSNNHSNDDDNPESMKPWSTHKLPSELKKARSKPQWSSLSSGKSEHAQTLRTDAAWSLSRKLERL
>NZ_CP012678.1|WP_062533216.1|260454_261858_-|DUF2868-domain-containing-protein
MLSPQNQLTELVRTLETDQHIFATDPLLVTEKLQAELGTPIQKLHRRASRIDSNGALTRVLEKIDGRIKGIMTVMSVVWCVSGFLGLFTLLQANVVNFFYVLVCLLGFHTIMLIGWLVLTMINQGKQSANWFANFVSPKRLIRGKDDITQAAVRLYEQQLQHSGMRWYLGRFSHQLWLATLTGMLLAIIFLLIIRQYSFSWESTLLSDQALITLTHMLGWLPSMVGFDVPDNAAIVQSRLVTEALPLPIARQWAGLLIGSLLMYGIVPRALAWSFCALMFRRKKMRLDIKLPYYQKIINFWQRQVVDADDFIEVDAPVAPKATVSAGKKLVALLEYPTDVDKWWHIAFNDNSNDNNDDKVDNFGIVDDRDDMTRLTTYLDQHPVQVLIGIHSQALPDRGTLRKLDHIASHAKYGLIVQLLSQENINTTTSDFSDPNTQQKTARYQQWQTALAARKIGLVTAHEQTID
>NZ_CP012678.1|WP_062533217.1|262466_263954_+|purine-permease
MDIKSTSNPTFARPEDENLGVGANIAYGFQHVLTMYGGIIAVPLIVGQAAGLTSPEIGLLIAASLFIGGLATLLQTLGVPFFGCQLPLVQGVSFASVATVVAIVTTGGGLPSVFGAVMAASALGFLITPIFSQIIKFFPPLVTGTVITTIGLTLMPVAARWAMGGNSKAPDFGSMTNIGLAGFTLLVVLLLSKLGNAALSRLSILLAMVIGTFTAWAFGLVDFSGITTGSIFAFPSPFHFGAPKFELAAIISMFIVVLVILVETSADILAVGDIIETEVDSKRLGNGLRADMAASMIAPIFGSFTQSAFAQNVGLVAVTGVKSRFVVAYAGIILVVLGLMPIMGRVIATVPTAVLGGAGIVLFGTVAASGIRTLAQVSYTNNMNLIIVATSIGFGMLPIAAPAFYDQFPDWFATIFHSGISSAAIMAIALNLLFNHLKAGNSENQSVFAAGTEDRSVRPDVILDLTDGDYFSEGKLFDVDHNEVPVAKVQKTAAH

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Crispr_ID: NZ_CP012678_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012678_3

243342-243442

Unclear

Consensus_repeat	Method
AAAGCCTCCCTGATTATTAAGGGATTAAGAC	CRISPRCasFinder

1 spacers

csx16,cas1,cas2

The CRISPR arrays of NZ_CP012678_3

>merge|NZ_CP012678|3|243342-243442|CRISPRCasFinder
TCCTCATCCCTGATTATTAAGGGATTAAGACACCATTAAGTTGCGGTAATCGTCGGTCGCTAGCTGTCTGAAAGCCTCCCTGATTATTAAAATGCTTAAGC

>NZ_CP012678|3|3|243342-243442|CRISPRCasFinder
TCCTCATCCCTGATTATTAAGGGATTAAGAC	ACCATTAAGTTGCGGTAATCGTCGGTCGCTAGCTGTCTG
AAAGCCTCCCTGATTATTAAAATGCTTAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012678.1\|WP_062533215.1\|258668_260201_-\|DUF3482-domain-containing-protein	unknown	unknown	gnl\|CDD\|371831
NZ_CP012678.1\|WP_062533206.1\|241204_241495_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP012678.1\|WP_062533204.1\|237719_238190_+\|PACE-efflux-transporter	unknown	unknown	gnl\|CDD\|226610
NZ_CP012678.1\|WP_062533199.1\|233294_234443_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_CP012678.1\|WP_062533217.1\|262466_263954_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP012678.1\|WP_062533200.1\|234445_235117_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226582
NZ_CP012678.1\|WP_062533210.1\|244942_245455_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012678.1\|WP_084785727.1\|241545_242217_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP012678.1\|WP_062533208.1\|242266_242575_-\|CRISPR-associated-protein-Csx16	csx16	cd09743_csx16_CAS-I:CAS-III	gnl\|CDD\|370601
NZ_CP012678.1\|WP_062533209.1\|244088_244883_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012678.1\|WP_062533202.1\|236078_236687_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP012678.1\|WP_062533205.1\|238522_240205_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|237414
NZ_CP012678.1\|WP_062533214.1\|257832_258501_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012678.1\|WP_062533201.1\|235213_235912_+\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NZ_CP012678.1\|WP_062533203.1\|236850_237396_-\|DUF2058-domain-containing-protein	unknown	unknown	gnl\|CDD\|378260
NZ_CP012678.1\|WP_062533211.1\|245878_250240_+\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|335690
NZ_CP012678.1\|WP_062533212.1\|250338_254769_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273172
NZ_CP012678.1\|WP_062533213.1\|257178_257748_-\|hypoxanthine-guanine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181675
NZ_CP012678.1\|WP_062533216.1\|260454_261858_-\|DUF2868-domain-containing-protein	unknown	unknown	gnl\|CDD\|378549
NZ_CP012678.1\|WP_084785728.1\|254815_257089_+\|exodeoxyribonuclease-V-subunit-alpha	unknown	unknown	gnl\|CDD\|273631

Protein	Function_ID	Function_description	E-value
NZ_CP012678.1\|WP_062533215.1\|258668_260201_-\|DUF3482-domain-containing-protein	gnl\|CDD\|371831	pfam11981, DUF3482, Domain of unknown function (DUF3482). This presumed domain is functionally uncharacterized. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with pfam01926. The central region of these proteins contains a hydrophobic region that is similar to pfam05433.	3.31815e-96
NZ_CP012678.1\|WP_062533206.1\|241204_241495_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	6.47881e-11
NZ_CP012678.1\|WP_062533204.1\|237719_238190_+\|PACE-efflux-transporter	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	4.12652e-31
NZ_CP012678.1\|WP_062533199.1\|233294_234443_+\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	8.04774e-46
NZ_CP012678.1\|WP_062533217.1\|262466_263954_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.30439e-169
NZ_CP012678.1\|WP_062533200.1\|234445_235117_+\|hypothetical-protein	gnl\|CDD\|226582	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism].	3.58549e-12
NZ_CP012678.1\|WP_084785727.1\|241545_242217_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.90387e-44
NZ_CP012678.1\|WP_062533208.1\|242266_242575_-\|CRISPR-associated-protein-Csx16	gnl\|CDD\|370601	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548). This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas (CRISPR-associated) genes.	3.33033e-30
NZ_CP012678.1\|WP_062533202.1\|236078_236687_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.2868e-44
NZ_CP012678.1\|WP_062533205.1\|238522_240205_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
NZ_CP012678.1\|WP_062533201.1\|235213_235912_+\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	3.13359e-97
NZ_CP012678.1\|WP_062533203.1\|236850_237396_-\|DUF2058-domain-containing-protein	gnl\|CDD\|378260	pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058). This domain, found in various prokaryotic proteins, has no known function.	9.45671e-63
NZ_CP012678.1\|WP_062533211.1\|245878_250240_+\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|335690	pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.	8.15083e-63
NZ_CP012678.1\|WP_062533212.1\|250338_254769_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273172	TIGR00609, RecBCD_enzyme_subunit_RecB, exodeoxyribonuclease V, beta subunit. The RecBCD holoenzyme is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.3612e-93
NZ_CP012678.1\|WP_062533213.1\|257178_257748_-\|hypoxanthine-guanine-phosphoribosyltransferase	gnl\|CDD\|181675	PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional.	2.0633e-104
NZ_CP012678.1\|WP_062533216.1\|260454_261858_-\|DUF2868-domain-containing-protein	gnl\|CDD\|378549	pfam11067, DUF2868, Protein of unknown function (DUF2868). Some members in this family of proteins with unknown function are annotated as putative membrane proteins. However, this cannot be confirmed.	2.32325e-80
NZ_CP012678.1\|WP_084785728.1\|254815_257089_+\|exodeoxyribonuclease-V-subunit-alpha	gnl\|CDD\|273631	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. [DNA metabolism, DNA replication, recombination, and repair].	2.1616e-102

>NZ_CP012678.1|WP_062533208.1|242266_242575_-|CRISPR-associated-protein-Csx16
MSIYLVSRHQGAVDWMRHMGHHYDEHLTHLANYEALSAGDVVVGSLPINIVADLADHGVTYWHLSLYIPEQLRGVELSAEQLSKLDAKLEEYVVLRGNSNAL
>NZ_CP012678.1|WP_084785727.1|241545_242217_-|CRISPR-associated-endonuclease-Cas1
MLNTAFIDVNSNINCNTHTRNHAHTKSQTFHYHSWLPQYPVASILGTEGIGSALYFNAYQQFFADNLQFNSRNRRPPTDPVNVVLSLSYTLLQHICQQAVYSIGFDPYHGVLHSPSYGRQSLACDFTELQRASIDFWVWQLFEQNILTLDDFGFSSATGYPCKLLKSGRAKYYQAFAAIRAGLSKNALNHVWIWQRRLNSYHFHKDLTVKEPNLSFISQLPMT
>NZ_CP012678.1|WP_062533206.1|241204_241495_-|CRISPR-associated-endonuclease-Cas2
MSKICFIIAYDISNNKRLQRLQRTVSSHFFQLQYSIYYGTMTRQRMDAFIITMQQIIHPTDDDLRIYEVEPLEQAFVIGKHNDDIMMFSERGQLKL
>NZ_CP012678.1|WP_062533205.1|238522_240205_+|NAD-dependent-malic-enzyme
MQNKRPLYIPFAGPALLETPLLNKGSAFSLEERDSFNLTGLLPHNIETIEEQSLRAYHQLRSFTSDIDKHIYLRNIQDTNETLFHHLIEQHIEEVMPLIYTPTVGQACEKFSQIYRRKRGLFISYPERHKIDDMLQNATKQKVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAYCLPILLDVGTNNQQLLDDPMYMGWRNPRISGDEYNEFVDLFIQAVKRRWPEVLLQFEDFAQENATPLLNRYRDQLCCFNDDIQGTAAVSVGTLIAACLNKGQKLSEQRIAFLGAGSAGCGIAEHIVRQMQREGLTEEQARKQVFMVDRYGLLTDDMTELQAFQKPLVQKKSDLESWDKSQEFSLLQVVKQAKITVLFGVSGQKGLFTQEIVEALCVNTENPIVLPLSNPTSRIEATPQEVTNWSKGKAIVATGSPFPDTTFEGQSFEVSQCNNSYIFPGIGLGVLASRAKGISDNMLTAASQALADISIEYEKAPGAILPPIKFIREISEKIAYAVALQAVEDKLALPVTAENLERRLSSNFWLPKYRSYRRTSF
>NZ_CP012678.1|WP_062533204.1|237719_238190_+|PACE-efflux-transporter
MHLCALEFWLITLSPLKRRLVYVTIFEIIAIISSTFVLMLLSDSDAAASLPVAVMVSVVAVAWNFIYNTGFEAWERRRMLAQRTLIIRSIHALGFEGGLFLICLPLYMVWYDVSLTKAFTMEAVLLLFFLVYTFVFTLIFDKIFTLPYQYKTVSAS
>NZ_CP012678.1|WP_062533203.1|236850_237396_-|DUF2058-domain-containing-protein
MTKNALQAQLLKAGLVDSKKAKLLSKQSQHAKRTGDAENIEAKKALAAAQAKKIEKDQQLNQEKQQILEQKMLTANIIQMIKQHQITDTNGEVSYQFVDHSKVKKINITQKLYDQIVAGHVVIARLEENQTLTYALLPRPLADRINAKMEGFMVVSNDKLEVELADDDPYAAYVIPDDLMW
>NZ_CP012678.1|WP_062533202.1|236078_236687_+|DedA-family-protein
MNQISEWVLIIMEKFGYLGIIFAMFAENVFPPIPSELIMPAAGFAVARGDLNLIMVILAGTLGSVLGALPLYYLGRIFNKERLIIFTEKYGKYVFVKPEDILSSNDWFNKHGKKAVFFGRMVPGIRSLISIPAGMNQMPMLSFLALTALGSSIWTTLLTLAGYHFGKNYELIETILAPYSKIFLLLAVVIIIGWLVKRRLFH
>NZ_CP012678.1|WP_062533201.1|235213_235912_+|VIT-family-protein
MHHSIHDEVHLSNRNHWLRAAVLGANDGLISTSSLLVGIAAASPSSQTLLLTGMAALTAGALSMAAGEYISVSSQADTEKADLDKELYELTNNAERELFELTKIYEARGLDHVLAHQVAVALTEHDALEAHARDEIGLNDLSQAKPIHASVASALSFIVGAILPVIGILILPAQTLVWSLASLTVVGLILLGIISARLGGAPVIPATARVVIWGVLAMVATSLIGRLFGVAV
>NZ_CP012678.1|WP_062533200.1|234445_235117_+|hypothetical-protein
MNINNPTNSQTVFRTNLLTQTLWIGLILSIASYALLMWGETVSQLLTATDKNFWYLSRASGFIAYTLFWLAVVFGLLLSTRLGKHFNAARVFALHQYLSLIAVGFAAFHAGVLLADNFLNLNLWQVLLPFGFQTERVGVALGQLGFWLLFICAFSFYIKKYIGQSAWRWLHFLTFFAYMFISIHVFMVGSDSRALPLLLFYASSQTLVFLLMTYRLVALRQAK
>NZ_CP012678.1|WP_062533199.1|233294_234443_+|FAD:protein-FMN-transferase
MKINAPNKNIPELVSFNILAMGCQIQVNLNITSLSLLCSKIEIEQHTALLASDVQQKLTYWEHIFSRFDDSSELMRLNNHTDQWRDVSAELFEVLQRAIQFVPKTQGLVTPTLLQSLWAAGYKHSFETLPKLSMPTVPVIDPSATLNINSTAKESFQDTPVVNYDNQNIERIQLRRLADGQYQVYLPAGMALDLNGYVKGWCAMQLAEYISQIHDWQIPCLVDMGGDIAIGMPKHQGTDVAITPIAWGVAIAKPYIIDSKQKQVHDDEDVAILKIRSGAVATSGQDYRRWWYDGRWQHHLIHPHYSRPVTSDVLTATVLATDTMTAEVYAKYCVMLGLKAAMAWLNKNHIAALLIDFDNKVMATSALDPYLVKPNLIASIGA
>NZ_CP012678.1|WP_062533209.1|244088_244883_-|hypothetical-protein
MKNYKRLLAGIIILLLIVLMGIFIWLWSSNRKNADPLPIMNSENQQLANELEDDINAIPASILQLQAEEKLQAALDDVITVFESRHPNVQVLARYVPTQSLLDLPDTSMSNHQPDSFMNADIIMTDKNIDQTQLSALQTVLDDAQNKRNKKQVNTNAIEQDNKHSININAETNNNEIRNLASFSYALKGKQAVDGVILTDNPIAVSFRNFLLSSAGQDVLSKYKYDNIDGYKNSVDDLFNPSSRTKNATGQPSVKIAEALSNGK
>NZ_CP012678.1|WP_062533210.1|244942_245455_-|hypothetical-protein
MPLRPIDAIFVHPKRRLYVVYYRGVLWQLPRMSINNAAWQRRQPYTDSPSELHLSHCQLIHDAVLAKKLYTLNLPTSLHGSTLLQFESWWDTNGFSWIKDQPTPSQSPLNADGNGDSAVIEADDLNHNTMHKISAPQTNKSPTNDKETETIDIFTGMLADLADEVRQSNT
>NZ_CP012678.1|WP_062533211.1|245878_250240_+|exodeoxyribonuclease-V-subunit-gamma
MFTIIQSHRTEILVEQLLSAYKSKNQPIFEEFIVIVPSMVLGEWLDKSIASQAGISTLVTTTFWGQYQWTLMQKVLAEYNTWLETMPSAQDILTVPEVAVLTGSVMQWRLFGYFTYYQTEIMANDAHPLYPLLSALLDGDADRSQQDIRLWSLATDFSRVFSRYLNHREAWLDLWSDNKAVDVEAMVAAKDELTIAFDKYAGKTPDWLVAHYTELEAAQRHLWHLLFAAVYKHRAAIETRFWQIMSGEVNNTEINLQALLPSHLHIFTIQQLPQNELDFLQRLSKYIDITLLHYNPSQLFWADIVDKQWLQRQQVINPESVFLRDYGHTLLSRLGKQSRETFAMLASLSGNEQHEGFELQWHDRFDVSDNINLAFDSHTESASSLSLLAHLQQDVLMLDESATQQATAGRVSAALGAQMALDLDDDTNNINSLSKNKADNKKKPKNIEPSENQWYSDDVLASKYNEQPRQWQLSQYDNSLSIHSCHNLQRQLEILRSMIGRWLNEPITKGKKRHLSDIVVLLPDVDRHHDLITSVFVNGKGQDGLTLPAKITGVVDKSIRQLWEAISGFYGLLGSETARFESAEVLDWLMLPPLYESLGLTHEQMRRGCDLLEQAGFVRGFDEAHLQYSLHTQDYDYRFSFAYALDQIALGLIMPEAGISDCLYPDNWKEDVLAEKTVPISSISLGDAPIVEALCRVHAGLNACRYEYQARYKAEDWLNRIESNIIHLYFGALDQTRPMRAIFNAMNGFKSSLRANRHYQRYHADSKNDVNIANDDVLAVGQVEAKLSQVSTLPLKLSFMLDSIEDELESQQVSAEPTGVITFGRFGALRNVPFGLVVMLNMDLSEFPNRDRDNRYDLMKAGLAKRGDRFSEDDDNGAFLDALLCARNACWIFYNGQRLTDTHEHLPANPVSELLQFLQGEIQWQWDPLKNAQKSFNIDNNLNSSAINDNNAALTAQVQRYLPKLIEQWLVTRHPALPFAEEVFITSEILSTQAATDSAEVSEQNFMQMLERAMQGEKLNQKQTNAPAKVWQDVFEHLQARDVENNQQPIKVNLPTKADYAVIAQRIQPNNDTNNDTDENFDVAHIDMQYLYLQVRHPARYFLKEQQVHIVLPAEDTVYQEPLSLSSLDAYTVNAQLLSGLYTATNDNSVVNENTNQQAAPINRLLYDPVMPAGVARQSTLNYQQLKITEQCREFSEELSSMGIQVNRHFTLDADDIDIESAEICLTLLTPCAEKMISVDAADMNIQGQINIKGSVPLALSAEKLSAEKSPELWLNILPNGARTQHLLRFWLAHVYWQVARRTTEAQVTANDGRSIWRFNKPSTEHAKYKGKTTFSLAPIAYETALAELLKWIRFAQIAGSTPMTILPMYAITYLDKVSDAQRKESVYQPKRGDFDSWLWSGYNSDMTYDTCSQHELWQYILQKQDGFTALTDALPVLAQPLFGAMNTALMPL
>NZ_CP012678.1|WP_062533212.1|250338_254769_+|UvrD-helicase-domain-containing-protein
MTQTMLKANNKNYNENNDFEPMEKTIETICQSYSAQQQPPAVRVPLHGKYLIEASAGTGKTWTLTGIVLRLLIEAKRAPEHIIATTFTRAAAAEMRERIHARLVDFHQLLQWFNKLQANSATHPILYPQLMASNVNQNKMSDVANNKDNEKLESSNKVTPEQRQTRQQWLEQQAKLAGYTDLMADPINSHLLSYLLDNTERYPLMEAIRRTALVLTTLDKLFVGTLDSLSQKWLSEYSAETGHQQGVQISDHEQVVIESIIHDKVRAFHSAMYNQQPEVYALLQHTKRLTSPVDHLSVAQKSIQFISTPIEEVELGATIDFDAYRQALEDFKNCDLKDIEPYFDLEYRTAQGFGKAGKVGKNIGAIGAIQQAIHQYGEVFFTHIEAQADVLYTELPNAFISKEEGGKVFNKGKEAERLAFINLKGISALKTLHDYTERLNLYLDSLIENLNRDIAIKVREKLPAILEARRETTFALQMVRLNQALSGKQGERLARYIRHHYPVALIDESQDINGEQARMIERIYIKQSSIKQYSKEDKDTHRGFLLLVGDPKQAIYGFRGGDVANYNAMKAHFDDKHMMSLDVNRRSNERLITALNHWFGRSQPITNADDKSESSTADALAQLGKGIYYQHITAVKRDEHLSWQPPVSQPCAMSPEVTAILPNNPVSIIHLPYNKEAKYNDCELTALHIAALLASQQTINGRPLKPSDIGVLGRRKHELKQVEDMLTKLGVPTLETSETNIFDTVIAADLVALLEAMLRPQRRDIINRVLTGHFYQLSLADVQALMLSADTDNIEAQHMDSEQATLKQGYKQNYKQSYQDFQTYLKTAANHWQHGGILSALHYVLGYNPMAKQGSHKSIWVGLAALEDGARYLMDLRHLLDILAQHGMHIGEYELLAWYKKNMNSKRIPEWAQQQPLPTESGVQLMTIHKSKGLEFPVVYVVGLDNASPKAGGRSKHNLFLYNHDVGTHELNNEINSNQTERRLSASAGKRHSKSAKGDISTDHYAQFETIENYEELRRLAYVAFTRASEQLYIVISDVYSSAGSERKPILQWLDGDNKDKTFTQPERLQAHTGWIEYGMIETNAETIIKVNNNLKMNSHSSVTRSNAMTLIDYQPAYDQLRNHQFKGWEKTSFTALSRQLDEQSQALAVFDDGVEDDFDLTDSIKLSQSRLSEDNQDMNESGSIMSADNIRFRFVKGANAGTFLHQVFEKIDFTNDNKWSAVIDQAIRQYQLPLIYTSAASQKRLQKNKMNVTLANNSAIVEELSDIEEAEIQLAAVHNELMAWIEDVLSAPLLASGQPLKAIAANKRIAELGFNMGLSDSFTPEAINEIFERHLPDEPEKHIQLTPQYSEHIYRYLRGEIDLVYEHAGKFHIVDYKSNYLGDSLSNYNNKNLKLAMNKTGYWLQAAIYQVALHRFLNLRINDYKNNEEQYLGAVEYVFLRGIDSQETHTYGRIQWQIPFALIQELDTLFGNANV
>NZ_CP012678.1|WP_084785728.1|254815_257089_+|exodeoxyribonuclease-V-subunit-alpha
MKNSQDLTQTDEKNSNTAKNKFSDSKKEQQILVINNQSKVESDVSNSWATTICQYLSQRRIQTKVAYQAQLQSNNIYDEDREPQDWLFDAIFEILIQRLEEGHTVLVLNDSDSNTSSSSKLYRWQQQLLQPLLQSLLIPTNGIVATIDFEILENIALWETLLLQTMLSEYEQKILRQRYSICVSLYHYFQYVYEHSKDITDSLNIFIKTIKSAQLFEIVNIKNEIINNPIVFQIENSLESNAVAKKNISITLWLHRTWQAEYDLARHIIRIKQQTINELPIVLSPLLNAEQKAAIHMANRSAFSIITGGPGTGKTFTVAQLVIALQQAQNDNEVGSVSSHANLALAAPTGKAAQRMQESLQDAIQHAGVTMQLPEAKTIHRLLGIGQGGRPRYNTANPLSEDIVIVDEASMLGVEMANYLVSAIKPNARLILLGDANQLAAVDAGAVLADLCRIPVLQDIHKRLDVSRRFTTESGIGKLASLINSSITDMPAVWKLMQDEETLSFYQLSNHLSEPLSEKEIAVTNDNSINTFSTLKVLKILLEKYSHYINDSKKILIETNTLKSPSTAQYMTYFKELMTVLNTFKVLTAGHNGRCGDHYINRYLSEQHKEQLKLPLSKSPWYHGRPVMILQNNYELGLFNGDIGICLQTERGILQVFFENKIQGIAVNMFSDDMIATAYAMTIHKSQGSEFEHVAISFDDNNARLLSQELIYTAVTRAKKQVTIFSTTSAFTRALSTPTVRQTGLGLQFANLDSVTE
>NZ_CP012678.1|WP_062533213.1|257178_257748_-|hypoxanthine-guanine-phosphoribosyltransferase
MTQISNQEIEKTLRNSECIISSIEVAAAYERLAAQLNLHYAGLNPIVMVVMNGGLIPAGQLLTHLTFYHRMHYIHASRYRDNQGTNELDWKFKPDVNIAGEHVLLIDDIFDEGITLKAIVEELGKEQPASIETCVLLNKEHDRKVVGFDVDFVGINVADRYVYGCGMDFHGYLRHLPGIYAIKENKVSA
>NZ_CP012678.1|WP_062533214.1|257832_258501_-|hypothetical-protein
MAYYFGFIPSDKLSSMIDEAESIITTNEAVDYYPYRNALTQQIARELNDNLLVSLIDVIPNPERQESMRKIVNTIERTTETLLNVLLGKDTNKDVIPSFNFLKDKSIFIDNQGVRRVGFKLSESSAQTINEGFAAITPDNVDRSQFKIALETMTDESLTHFMSRFTETLKLGMIKRKSVPVAKAAIDKGMSMALNKLLPQLPNAGLNRLAIFYRPYLIQLDD
>NZ_CP012678.1|WP_062533215.1|258668_260201_-|DUF3482-domain-containing-protein
MNQDNNNNSYMSKQPTRLLEENAYLDVTPQSARAKTTIGSGEPLKLAVVGHTNTGKTSILRTLLRDVYFGEVKNEAATTRHVERAQLIDSQTGDVLVALYDTPGLEDASGLMDWLEDNTASRRDGIERLQQFLAADIASGATASYSSEHEDYSQEAKVIRQLLASDMAVYVIDAREPVLGKYKDELAILSWAAIPVMPVFNFTDSQDGNIDAWQTMLARRNLHISTRFDSVAFEFSDEMRLWQNLATMLTHAEMLEQLMQRRTEDWALLYDDANIIIADFLLNVAAFVREINDDDDPMPILQQMQEAVRQSERAMQHQLLNSYKFYDNAVAATPLELKAYQQDPFDAELLKSYGIRTTSGAAAGALLGLGIDAAALGTTLGLGTALGGIAGGLLSNTGSIADRLSGVKRLYIDPATLTLLATRAIDLHMALRHRGHAATDATQMSYSNNHSNDDDNPESMKPWSTHKLPSELKKARSKPQWSSLSSGKSEHAQTLRTDAAWSLSRKLERL
>NZ_CP012678.1|WP_062533216.1|260454_261858_-|DUF2868-domain-containing-protein
MLSPQNQLTELVRTLETDQHIFATDPLLVTEKLQAELGTPIQKLHRRASRIDSNGALTRVLEKIDGRIKGIMTVMSVVWCVSGFLGLFTLLQANVVNFFYVLVCLLGFHTIMLIGWLVLTMINQGKQSANWFANFVSPKRLIRGKDDITQAAVRLYEQQLQHSGMRWYLGRFSHQLWLATLTGMLLAIIFLLIIRQYSFSWESTLLSDQALITLTHMLGWLPSMVGFDVPDNAAIVQSRLVTEALPLPIARQWAGLLIGSLLMYGIVPRALAWSFCALMFRRKKMRLDIKLPYYQKIINFWQRQVVDADDFIEVDAPVAPKATVSAGKKLVALLEYPTDVDKWWHIAFNDNSNDNNDDKVDNFGIVDDRDDMTRLTTYLDQHPVQVLIGIHSQALPDRGTLRKLDHIASHAKYGLIVQLLSQENINTTTSDFSDPNTQQKTARYQQWQTALAARKIGLVTAHEQTID
>NZ_CP012678.1|WP_062533217.1|262466_263954_+|purine-permease
MDIKSTSNPTFARPEDENLGVGANIAYGFQHVLTMYGGIIAVPLIVGQAAGLTSPEIGLLIAASLFIGGLATLLQTLGVPFFGCQLPLVQGVSFASVATVVAIVTTGGGLPSVFGAVMAASALGFLITPIFSQIIKFFPPLVTGTVITTIGLTLMPVAARWAMGGNSKAPDFGSMTNIGLAGFTLLVVLLLSKLGNAALSRLSILLAMVIGTFTAWAFGLVDFSGITTGSIFAFPSPFHFGAPKFELAAIISMFIVVLVILVETSADILAVGDIIETEVDSKRLGNGLRADMAASMIAPIFGSFTQSAFAQNVGLVAVTGVKSRFVVAYAGIILVVLGLMPIMGRVIATVPTAVLGGAGIVLFGTVAASGIRTLAQVSYTNNMNLIIVATSIGFGMLPIAAPAFYDQFPDWFATIFHSGISSAAIMAIALNLLFNHLKAGNSENQSVFAAGTEDRSVRPDVILDLTDGDYFSEGKLFDVDHNEVPVAKVQKTAAH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012678_1	1.1\|240815\|32\|NZ_CP012678\|CRISPRCasFinder	240815-240846	32	MG592458	Vibrio phage 1.083.O._10N.286.52.B9, partial genome	29066-29097	5	0.844
NZ_CP012678_1	1.1\|240815\|32\|NZ_CP012678\|CRISPRCasFinder	240815-240846	32	NZ_CP050186	Bacillus thuringiensis strain HER1410 plasmid pLUSID3, complete sequence	10940-10971	6	0.812
NZ_CP012678_2	2.5\|243137\|33\|NZ_CP012678\|CRT	243137-243169	33	MN935200	UNVERIFIED: Staphylococcus phage VTCCBPA116 genomic sequence	16145-16177	8	0.758
NZ_CP012678_2	2.4\|243068\|32\|NZ_CP012678\|CRT	243068-243099	32	MN694311	Marine virus AFVG_250M573, complete genome	25499-25530	9	0.719

1. spacer 1.1|240815|32|NZ_CP012678|CRISPRCasFinder matches to MG592458 (Vibrio phage 1.083.O._10N.286.52.B9, partial genome) position: , mismatch: 5, identity: 0.844

gtttcagat--ttttaattgggatgctttgaatt	CRISPR spacer
--ctcagatgattttaattgggatacgttgaatt	Protospacer
  .******  *************.* *******

2. spacer 1.1|240815|32|NZ_CP012678|CRISPRCasFinder matches to NZ_CP050186 (Bacillus thuringiensis strain HER1410 plasmid pLUSID3, complete sequence) position: , mismatch: 6, identity: 0.812

gtttcagatttttaattgggatgc---tttgaatt	CRISPR spacer
atttttgatttttaattgggatgcccttttga---	Protospacer
.***. ******************   *****

3. spacer 2.5|243137|33|NZ_CP012678|CRT matches to MN935200 (UNVERIFIED: Staphylococcus phage VTCCBPA116 genomic sequence) position: , mismatch: 8, identity: 0.758

taataatatcctatgatataattagtaagttgt	CRISPR spacer
atattatttcctatgatataattagtacataat	Protospacer
  ** ** ******************* .* .*

4. spacer 2.4|243068|32|NZ_CP012678|CRT matches to MN694311 (Marine virus AFVG_250M573, complete genome) position: , mismatch: 9, identity: 0.719

atcacaagttctagattagaaagagtttctac	CRISPR spacer
gaaagaacttctagattagaaaaagtttttga	Protospacer
.  * ** **************.*****.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2275398 : 2364792

uncultured_Caudovirales_phage(47.06%)

terminase,protease,capsid,plate,tail,portal,head,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062535523.1\|2275398_2276685_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.9e-90	52.6
WP_062535525.1\|2276933_2278931_+	transketolase	NA	NA	NA	NA
WP_062535527.1\|2279181_2279571_+	hypothetical protein	NA	NA	NA	NA
WP_062535530.1\|2279918_2280518_-	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_062535532.1\|2280702_2281728_+	DNA topoisomerase I	A0A2R2ZH57	Clostridioides_phage	1.6e-14	31.1
WP_062535533.1\|2281768_2282101_-	DUF779 domain-containing protein	NA	NA	NA	NA
WP_062535535.1\|2282265_2283294_-	alcohol dehydrogenase AdhP	A0A2K9L7I1	Tupanvirus	4.4e-33	28.4
WP_062535537.1\|2283404_2284931_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_062535539.1\|2285223_2287134_+	AAA family ATPase	A0A172Q090	Acinetobacter_phage	4.9e-70	36.4
WP_062535541.1\|2287292_2288474_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_062535544.1\|2288875_2290045_-	DUF3596 domain-containing protein	A0A2H4JGM5	uncultured_Caudovirales_phage	8.4e-65	37.4
WP_062535546.1\|2290244_2290442_-	conjugal transfer protein TraR	NA	NA	NA	NA
WP_062535548.1\|2290446_2290686_-	hypothetical protein	NA	NA	NA	NA
WP_062535550.1\|2290682_2290895_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_062535552.1\|2290891_2293561_-	toprim domain-containing protein	A0A2H4JDT6	uncultured_Caudovirales_phage	2.9e-246	47.1
WP_062535554.1\|2293586_2293931_-	hypothetical protein	NA	NA	NA	NA
WP_084785836.1\|2293942_2294167_-	hypothetical protein	NA	NA	NA	NA
WP_062535556.1\|2294186_2294441_-	hypothetical protein	NA	NA	NA	NA
WP_062535558.1\|2294430_2294637_-	hypothetical protein	NA	NA	NA	NA
WP_062535561.1\|2294768_2295110_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062535563.1\|2295168_2295393_-	hypothetical protein	NA	NA	NA	NA
WP_062535565.1\|2295385_2295592_-	hypothetical protein	NA	NA	NA	NA
WP_062535567.1\|2295581_2295797_-	hypothetical protein	NA	NA	NA	NA
WP_157049311.1\|2295780_2295951_-	hypothetical protein	NA	NA	NA	NA
WP_062535569.1\|2296063_2296354_+	Arc family DNA-binding protein	A0A0P0IVR2	Acinetobacter_phage	2.4e-05	37.9
WP_062535571.1\|2296565_2297087_+	hypothetical protein	NA	NA	NA	NA
WP_062535573.1\|2297274_2297760_+	hypothetical protein	NA	NA	NA	NA
WP_062535575.1\|2297955_2298531_+	hypothetical protein	NA	NA	NA	NA
WP_084785902.1\|2298533_2299493_-	hypothetical protein	A0A2H4JAG0	uncultured_Caudovirales_phage	6.6e-84	50.6
WP_084785837.1\|2299555_2299996_-\|tail	phage tail protein	A0A2H4J8N8	uncultured_Caudovirales_phage	1.1e-38	55.8
WP_062535581.1\|2299986_2302719_-\|tail	phage tail tape measure protein	B9A7B3	Serratia_phage	8.0e-42	27.6
WP_062535583.1\|2302728_2303451_-	LamG domain-containing protein	NA	NA	NA	NA
WP_062535585.1\|2303447_2303645_-	hypothetical protein	NA	NA	NA	NA
WP_062535587.1\|2303644_2304121_-	hypothetical protein	A0A1B0V1X9	Roseobacter_phage	1.7e-11	50.0
WP_062535589.1\|2304126_2304354_-	hypothetical protein	NA	NA	NA	NA
WP_062535591.1\|2304356_2304683_-	hypothetical protein	NA	NA	NA	NA
WP_084785838.1\|2304679_2304796_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_084785839.1\|2304804_2305233_-\|tail	phage tail assembly protein	A0A2H4J8P1	uncultured_Caudovirales_phage	1.0e-15	48.3
WP_062535593.1\|2305408_2305924_-\|tail	phage major tail tube protein	A0A2H4JCA8	uncultured_Caudovirales_phage	4.2e-37	43.1
WP_062535595.1\|2305957_2306566_-\|tail	phage tail protein	A0A2H4J8M7	uncultured_Caudovirales_phage	1.9e-68	65.4
WP_062535597.1\|2306568_2307513_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	5.4e-54	35.1
WP_157049312.1\|2307515_2308070_-	hypothetical protein	NA	NA	NA	NA
WP_062535603.1\|2308075_2308993_-	hypothetical protein	A4PE49	Ralstonia_virus	2.2e-20	35.7
WP_062535605.1\|2309018_2309591_-	hypothetical protein	M4SQE7	Psychrobacter_phage	2.4e-25	42.6
WP_062535607.1\|2309624_2310434_-	hypothetical protein	F1BUP1	Erwinia_phage	2.4e-10	31.7
WP_062535609.1\|2310457_2310907_-	hypothetical protein	NA	NA	NA	NA
WP_062535611.1\|2310931_2311459_-\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	1.0e-25	37.8
WP_062535613.1\|2311451_2312396_-\|plate	baseplate assembly protein	Q6K1H4	Salmonella_virus	1.2e-40	36.9
WP_062535615.1\|2312392_2312758_-\|plate	baseplate assembly protein	A0A2H4JE52	uncultured_Caudovirales_phage	1.6e-22	56.5
WP_062535617.1\|2312754_2313315_-\|plate	phage baseplate assembly protein V	A0A2H4JGB7	uncultured_Caudovirales_phage	1.1e-30	38.9
WP_157049313.1\|2313499_2313670_+	hypothetical protein	NA	NA	NA	NA
WP_062535619.1\|2313718_2314159_-	phage virion morphogenesis protein	A0A2H4JCC1	uncultured_Caudovirales_phage	7.8e-32	52.8
WP_062535621.1\|2314155_2314563_-	hypothetical protein	NA	NA	NA	NA
WP_062535623.1\|2314559_2315075_-	glycoside hydrolase family 108 protein	G3ENC1	Psychrobacter_phage	3.8e-46	56.4
WP_062535625.1\|2315077_2315407_-	hypothetical protein	NA	NA	NA	NA
WP_062535627.1\|2315403_2315868_-	hypothetical protein	NA	NA	NA	NA
WP_062535629.1\|2315869_2316094_-	hypothetical protein	NA	NA	NA	NA
WP_062535631.1\|2316090_2316531_-\|head	head completion/stabilization protein	A0A2H4JFX3	uncultured_Caudovirales_phage	7.9e-16	39.0
WP_062535634.1\|2316634_2317366_-	hypothetical protein	A0A2H4JAI1	uncultured_Caudovirales_phage	2.5e-35	36.8
WP_062535636.1\|2317366_2318368_-\|capsid	major capsid protein	A0A2H4J8R3	uncultured_Caudovirales_phage	3.2e-81	48.5
WP_062535639.1\|2318404_2319292_-	hypothetical protein	A0A2H4JGC7	uncultured_Caudovirales_phage	2.4e-32	38.5
WP_062536713.1\|2319457_2321260_+\|terminase	terminase	A0A2H4J8R1	uncultured_Caudovirales_phage	5.8e-174	53.3
WP_062535641.1\|2321256_2322264_+\|portal	phage portal protein	A0A2H4JCD2	uncultured_Caudovirales_phage	6.2e-109	57.4
WP_062535643.1\|2323287_2324061_+	hypothetical protein	NA	NA	NA	NA
WP_062536715.1\|2324162_2324840_-	hypothetical protein	NA	NA	NA	NA
WP_062535644.1\|2325371_2325698_-	hypothetical protein	NA	NA	NA	NA
WP_062535646.1\|2326217_2328005_-	flotillin family protein	NA	NA	NA	NA
WP_062535648.1\|2328100_2328820_-	DUF1449 family protein	NA	NA	NA	NA
WP_062535650.1\|2329450_2330653_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_062535652.1\|2331146_2331884_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_062535654.1\|2331935_2333681_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_084785840.1\|2333750_2334662_+	DUF1365 domain-containing protein	NA	NA	NA	NA
WP_157049355.1\|2334881_2335352_+	heme-binding protein	NA	NA	NA	NA
WP_062535662.1\|2335514_2336963_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_062535665.1\|2337112_2337523_+	DUF2177 family protein	NA	NA	NA	NA
WP_062535667.1\|2337701_2338247_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_157049356.1\|2338549_2339551_+	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_062535670.1\|2339733_2340216_-	DNA starvation/stationary phase protection protein Dps	NA	NA	NA	NA
WP_062535672.1\|2340521_2340941_-	GFA family protein	NA	NA	NA	NA
WP_062535674.1\|2341102_2343214_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_062535675.1\|2343290_2343863_-	hypothetical protein	NA	NA	NA	NA
WP_062535677.1\|2344093_2344468_+	hypothetical protein	NA	NA	NA	NA
WP_062535679.1\|2344598_2344985_-	hypothetical protein	NA	NA	NA	NA
WP_062535681.1\|2345273_2346254_+	hypothetical protein	NA	NA	NA	NA
WP_062535682.1\|2346453_2346969_-	hypothetical protein	NA	NA	NA	NA
WP_062535685.1\|2347304_2349131_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	4.2e-55	28.3
WP_062536717.1\|2349217_2349847_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_062535688.1\|2350253_2351357_-	hypothetical protein	NA	NA	NA	NA
WP_062535690.1\|2351407_2352142_-	7-carboxy-7-deazaguanine synthase QueE	M1PXL8	Cellulophaga_phage	2.2e-07	34.2
WP_062535691.1\|2352415_2353237_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_062535693.1\|2353313_2354243_-	alpha/beta hydrolase	A0A220T682	Eptesipox_virus	3.0e-09	36.6
WP_062535695.1\|2354798_2355845_-	lipoyl synthase	NA	NA	NA	NA
WP_062535698.1\|2356638_2359242_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_084785841.1\|2359425_2359869_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_062535700.1\|2360020_2360419_-	hypothetical protein	NA	NA	NA	NA
WP_062535702.1\|2360529_2361327_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_062535704.1\|2361590_2362403_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_084785842.1\|2362485_2363538_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_062535706.1\|2363604_2364792_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	8.9e-38	30.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012709

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012709_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012709_1

11044-11135

Orphan

Consensus_repeat	Method
ATGCTAGTTTTGTCCCGCATTATGCTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012709_1

>merge|NZ_CP012709|1|11044-11135|CRISPRCasFinder
ATGCTAGTTTTGTCCCGCATTATGCTAGTTTTGTCCCGCATTATGCTAGTTTTGTCCCGTATAAATGCTAGTTTTGTCCCGCATTATGCTAG

>NZ_CP012709|1|1|11044-11135|CRISPRCasFinder
ATGCTAGTTTTGTCCCGCATTATGCTAG	TTTTGTCCCGCATTATGCTAGTTTTGTCCCGTATAA
ATGCTAGTTTTGTCCCGCATTATGCTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012709.1\|WP_062536869.1\|16478_17108_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224103
NZ_CP012709.1\|WP_062536882.1\|17253_18027_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP012709.1\|WP_084785921.1\|11201_12155_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP012709.1\|WP_062536851.1\|7298_9932_-\|MobA/MobL-family-protein	unknown	unknown	gnl\|CDD\|367473
NZ_CP012709.1\|WP_062536857.1\|12594_12942_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227028
NZ_CP012709.1\|WP_062536867.1\|15497_16025_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP012709.1\|WP_062536865.1\|15050_15257_-\|ParD-like-family-protein	unknown	unknown	gnl\|CDD\|314732
NZ_CP012709.1\|WP_062536843.1\|1153_1573_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012709.1\|WP_062536853.1\|10193_10505_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012709.1\|WP_062536847.1\|4554_5211_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012709.1\|WP_062536861.1\|13472_14093_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239736
NZ_CP012709.1\|WP_062536855.1\|12239_12473_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_CP012709.1\|WP_157049363.1\|1996_2557_-\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP012709.1\|WP_062536849.1\|6311_7268_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012709.1\|WP_062536846.1\|2833_4171_-\|SidA/IucD/PvdA-family-monooxygenase	unknown	unknown	gnl\|CDD\|226017
NZ_CP012709.1\|WP_062536859.1\|12943_13246_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|372700
NZ_CP012709.1\|WP_062536863.1\|14284_15058_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576

Protein	Function_ID	Function_description	E-value
NZ_CP012709.1\|WP_062536869.1\|16478_17108_+\|hypothetical-protein	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	3.80441e-60
NZ_CP012709.1\|WP_062536882.1\|17253_18027_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	6.75821e-14
NZ_CP012709.1\|WP_084785921.1\|11201_12155_+\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	1.26981e-38
NZ_CP012709.1\|WP_062536851.1\|7298_9932_-\|MobA/MobL-family-protein	gnl\|CDD\|367473	pfam03389, MobA_MobL, MobA/MobL family. This family includes of the MobA protein from the E. coli plasmid RSF1010, and the MobL protein from the Thiobacillus ferrooxidans plasmid PTF1. These sequences are mobilisation proteins, which are essential for specific plasmid transfer.	1.84047e-35
NZ_CP012709.1\|WP_062536857.1\|12594_12942_+\|hypothetical-protein	gnl\|CDD\|227028	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown].	2.02248e-47
NZ_CP012709.1\|WP_062536867.1\|15497_16025_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	1.45525e-39
NZ_CP012709.1\|WP_062536865.1\|15050_15257_-\|ParD-like-family-protein	gnl\|CDD\|314732	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system. ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.	3.0532e-25
NZ_CP012709.1\|WP_062536861.1\|13472_14093_-\|recombinase-family-protein	gnl\|CDD\|239736	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.	4.76198e-68
NZ_CP012709.1\|WP_062536855.1\|12239_12473_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	2.00906e-14
NZ_CP012709.1\|WP_157049363.1\|1996_2557_-\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	4.90921e-38
NZ_CP012709.1\|WP_062536846.1\|2833_4171_-\|SidA/IucD/PvdA-family-monooxygenase	gnl\|CDD\|226017	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	9.63206e-162
NZ_CP012709.1\|WP_062536863.1\|14284_15058_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.56819e-140
NZ_CP012709.1\|WP_062536859.1\|12943_13246_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|372700	pfam13744, HTH_37, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain.	1.8235e-08

>NZ_CP012709.1|WP_062536853.1|10193_10505_+|hypothetical-protein
MSIISDDLFAVKMKQLQALKNEINQDKEELYKVMGEWLANALGDNDNNELQAIFLDSHDNPKYLRLKKHRDLLETVANKLNKLESETKVVSSGFTPPKSAESN
>NZ_CP012709.1|WP_062536851.1|7298_9932_-|MobA/MobL-family-protein
MNNQGFHLSVTAISKAKNHSVVAKSAYNSGSKLISKLTGVVHDYTSKTKDSTLQLKDSRGETYTKVIEPNLVHTALITPAIAGNLVVTREGFWNAIEQVETRKNAQFGTEIDVMFPEGIGAEQRIELVETYSQTLSDRYNVLVDVAIHRPHSHVQHKQDGQVAELTTNNFHAHILLSSREILADGEHGYGLSKRKNWSQWSTTERLSKGLNGRGDELKYIRTLWAELANERLPENKAITEKSYREQGINRLPKMKLGKSLYKDVLKGNRSLINEYNETIDEINAYIEQSGLVIDYNDSGRIDLEYNVQTVNGKPVHYKKRKPFARIDLSQIRLVSPAAEPELELEPSPCDIDADNAKAVARLLALSDDIEQQKKMARSALLSTINKLDEELAHQAKQTITILKNTENLPGYGQEVGQDYQAAQEKMRALARQVHTQDESHALDAALGLVEQFRENNTLQTSRSVNHLQDQLEQIDSRVRDNKKVLDTLVPLNNKVMTEYKALKVTQKPFITQLAALETDFKALDWIDIEKTELQRHWREAFEDLQAIDVTNNMETYHKFAAFADLDVDQIKSLEQEREALSALKAIEINAEAENRLTALVSEVQVFKTVNDNDIKQLKQQITTSEKTYQRLSPFYEQRRELLDKSEAVIAQDDELHDEITSTKTTQLNADRLTEWRTRTMALHQQLIKAHEQAEREKKAKRERAEEEKRRQAQLEKERQQAALEQARITETAQYRDRFDDLLVQVNARVDAMDFKAIETAATVIAAAEKLAAEAFILETLTQTDSLTSLQKNLRDTEAKRMAIDVAQSTQTLRQALDKMPDDPRKIETLNELNARFEQVPEIRSGAQNLTQTLVVQVLEIENTLHAQARRYSSPRPF
>NZ_CP012709.1|WP_062536849.1|6311_7268_-|hypothetical-protein
MNKPVSHEQDLYDELRNLVTTLSPIIVMLNGLIEQADNVVADRLNTSLDKIDRQVYDVTVAIKKLSSTASVTSQSLSEYQALTLEQLQVAVTAFTKNELPSRYDDKIKALINEIKQQLDIAVTSVVTAKNKSLEDQVGIIKEVADKLSTSATNLALFTSQYQAGHEQIIKDIETLETATKTRIAQVKEDADKDLDKIYKSIESMSIKRIAAAAAAATAAVVMSVVGLVFWYVPSFDEVAEMRHQQAELQRGIDELEMGWQQAFDKAISAKTVFACDVNKEKPDVISWCVRADSNTFLRDDKGVVYYKIAELKERRAAE
>NZ_CP012709.1|WP_062536847.1|4554_5211_+|hypothetical-protein
MVDKSVNQNSIESALESLENTTESLSNDAVTGVEVLKGDTVVYEDGDFDDYNAVNDYETDTEDKSDTEDKSDTKDKSDTKDKSDTKDKSDTKDEHSLTINSIYQWATKLKDEVMSDKDSKSVSDEEDKHGTTIANVYKWVSKLKDELISETSGMTHDVSEKAVAMLLNRLLDGMNAELEAFDKKIEDSEEPVDNAEEERNKIVAKQEKYQGMIDQLES
>NZ_CP012709.1|WP_062536846.1|2833_4171_-|SidA/IucD/PvdA-family-monooxygenase
MIDLIGIGLGPFNLSLAALLSNQPNITSKFFEQKSEFNWHKGMIFPHTTLQVPFMADLVTLIDPTSRYTFLNYLHIQHRLLKFYFLEDFEIYRKEYNHYCQWVAGQLSSAVFDTTVIKVALQENGNGFTVTVCEHGKVQTYMAKNIVIGTGSQPVLPPFLQSIAERAPHHCMHTANFSENFNFNSIRRSDTLTKILVLGSGQSAAEVYQVLFDQQFDENKNVKFQLDWITRSAGFFPMEYTPLGLEHFSPAYIDYFYSLPPTTKARVVSKQDLLHKGMSANTIRAVYHQLYERSIANQQTYSSLMSNCELLNATLGSTRNDRLSLTLRQHEQDHKSTAEYDCVIAGTGYKDELPQCLNRLFSAIEYDEFGQPKINRDYTLVYQNHLANHNNNSKIFVQNKETHTHGVGAGDLGLGAYRAGCIVNELMGKPIYDTETLDIFQKFGK
>NZ_CP012709.1|WP_157049363.1|1996_2557_-|DUF421-domain-containing-protein
MDLASIFIHDTTWTFAFEIAIRVIVMFSMIILFLRFTGKRGVRQLSVFELTIILSLGSIAGDPMFTKDLPIIQAVLIMSIVISLYRLSTWVMMKYQPFEDFLEGKSLYIVEDGLLVLEKIKKGKMSHDEFFAEMRRQGIEHLGQVRVGLLETDGEFSILLFAHDEVRYGLPLFPKQYQAVDHIEAG
>NZ_CP012709.1|WP_062536843.1|1153_1573_-|hypothetical-protein
MKDNLDLLFYERNLIDNGLQIMMTQNVKISVQSTDRLTEMYYKDLNTWLFELLSKVKSSNLDAYVDLSFNEINMIKSGLTLLDELTYGKSLEETEKDKAQSYADYKLKMTALREKISNIESYKMYGAHEKQRINSRLLI
>NZ_CP012709.1|WP_084785921.1|11201_12155_+|replication-initiation-protein
MSNDVELYEKKYPEKWIVMQNTITQAFREMSIDEKRIIILASPLVRISNATEKTPIDITASEFAKLSEIDTNSAYKQMKTASRKLMKRTFIYEDKDGDDTEVQWVIRSKYANGYISMHFTDEVIYLLQVFNSFNPYTKYLKDDVLSLKLSYSIDLYHLAKKHEAMGGFSMTLDEYRQELGTPKSYARINNLKENAVDGPIKEINGKTDIDISYENIKRGRTVVGLKFTVKAKPKSKGLESLNQNDESREIPSLTIKQIDRFAPLLANYSPFGSHAPSGKSTQEVISWLHTQLRDEAFLKTHKKHLLAVGYTHPKQSS
>NZ_CP012709.1|WP_062536855.1|12239_12473_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MTTTNYNIRLEQELKDSAFSVFESYGLTPSQAIKLFLTQVAQTNTVPLSFDYQARANVKTLDEALETKAVMNTVVSQ
>NZ_CP012709.1|WP_062536857.1|12594_12942_+|hypothetical-protein
MWTVITTELFNQWFDQQDESTQEKVLAALVVLEQQGPSLGRPLVDTVYDSKFTNMKELRVQHRGKPLRAFFAFDPKRQAIVLCIGDKGNKKRFYKEMLATADQQYECHLKTLGDL
>NZ_CP012709.1|WP_062536859.1|12943_13246_+|XRE-family-transcriptional-regulator
MTKTLQEMLADRSLDSRARIQQLAEQLLLENQLSRIREELEISQQELAQTMGIKQPSLSAIENRGNDLKISTMKKYVEAMGGKLRIDVELPTGKHIGFNV
>NZ_CP012709.1|WP_062536861.1|13472_14093_-|recombinase-family-protein
MFIRAYLRASTKEQDAKRARAELVVFAKEHHHKIAAFYIENESGATLLRPQLMQLIEDAHEGDIILVEQIDRLARLNPADWDTLKRMLSEKKLSVVSKELPTSYMAFQSEDNTEFMSSMLQAINAMLLDMLAAIARKDYEDRRRRQQEGIIRAKAEGKYLGRRKDVEKRKIIASLLKAGHSYTDIQRTAHCSRQLIAVVSKELKLI
>NZ_CP012709.1|WP_062536863.1|14284_15058_-|type-I-methionyl-aminopeptidase
MDKVVVKNAAELEVMRESGRLLASVFDYLDEKITVGISTMDINDLAERYIVDQLGARPASKGQYGYQYALNTSVNNVVCHGIPSDHQILKSGDIVNVDITLEQGGFIADSSKMYLIGEVLPLAKRLVDKTYKAMWEGIRVVKPGATLGDVGHAIQSYAEQQGYSVVREYCGHGIGREMHEEPQVLHYGHQGKGLVLQEGMTFTIEPMINQGKAKVKVKKDGWTVITNDKKLSAQWEHTIAVTSDGYEVLTLRNDETI
>NZ_CP012709.1|WP_062536865.1|15050_15257_-|ParD-like-family-protein
MGIVKIDDDLHEEIRKASSVMVRSINAQAEYWMKIGMLAESNPTMSYNQIINEQMRQADINVGNLIDG
>NZ_CP012709.1|WP_062536867.1|15497_16025_-|Rrf2-family-transcriptional-regulator
MAHISTGVEYSLHCLLYLTRPPTGVEEASVRSLAELQGVSNEFLAKLFTKMAKAGLVVATEGVKGGFRLAREPNNITVYDVVIAIDGEKVLFDCREIRGRCAIFDNKAPAWATEGICSIHAVMQMAEKAMHNELKQHTLADLAKRTTDKAHASYGIQVIEWLSHSSAERGINKDK
>NZ_CP012709.1|WP_062536869.1|16478_17108_+|hypothetical-protein
MKKILVINASPSQNDSYSRLLTERFIEQWKQRNPDDTFIFRELGNVNIPHVNQLWVKAAFTPEEARSDKDKQAILFSDELVKELQDADVVVFGSPMHNLSVPSTLKAYIDQIIRMGVTTSLVPGTPDSPYVGLLDNKKAYLFLARGGCGFGKGEAYEHMDFQEPYLKAILQMLGITDVTTVNVNYTAMKAELRLDSYTHAQEQVDALFN
>NZ_CP012709.1|WP_062536882.1|17253_18027_-|ankyrin-repeat-domain-containing-protein
MSASVLISTMLLTGCSSLNTHNTVDKTEVVKSSQVAPIPQVGFRYSDAENFDLANEDKLSWRIFYDKPSTGTDAKWFDAVKRGDLATIKYMVNNGQDLEAKDTGSLNQTALGWAAFIGYEDIVDYLVDKGADIYAKDDGDVYNVMKSAVLGGNTVIVKKAHRLLSDKAPVNLNDQAIEDDGETFIMVAASNNRIETVKYLLAQGANPNLVATTQDKTMQSYNQSAYSYACTRGHVEMQKLLASKGVVNHRTGKASCQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012709_1	1.1\|11072\|36\|NZ_CP012709\|CRISPRCasFinder	11072-11107	36	NZ_CP012709	Psychrobacter urativorans strain R310.10B plasmid 3, complete sequence	11072-11107	0	1.0
NZ_CP012709_1	1.1\|11072\|36\|NZ_CP012709\|CRISPRCasFinder	11072-11107	36	NZ_CP012709	Psychrobacter urativorans strain R310.10B plasmid 3, complete sequence	11051-11086	2	0.944
NZ_CP012709_1	1.1\|11072\|36\|NZ_CP012709\|CRISPRCasFinder	11072-11107	36	MN657110	Psychrobacter sp. strain ANT_P52 plasmid pA52P2, complete sequence	136-171	6	0.833
NZ_CP012709_1	1.1\|11072\|36\|NZ_CP012709\|CRISPRCasFinder	11072-11107	36	MN657033	Psychrobacter sp. strain ANT_P15B plasmid pA15BP3, complete sequence	148-183	7	0.806
NZ_CP012709_1	1.1\|11072\|36\|NZ_CP012709\|CRISPRCasFinder	11072-11107	36	MN657110	Psychrobacter sp. strain ANT_P52 plasmid pA52P2, complete sequence	157-192	7	0.806

1. spacer 1.1|11072|36|NZ_CP012709|CRISPRCasFinder matches to NZ_CP012709 (Psychrobacter urativorans strain R310.10B plasmid 3, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgtcccgcattatgctagttttgtcccgtataa	CRISPR spacer
ttttgtcccgcattatgctagttttgtcccgtataa	Protospacer
************************************

2. spacer 1.1|11072|36|NZ_CP012709|CRISPRCasFinder matches to NZ_CP012709 (Psychrobacter urativorans strain R310.10B plasmid 3, complete sequence) position: , mismatch: 2, identity: 0.944

ttttgtcccgcattatgctagttttgtcccgtataa	CRISPR spacer
ttttgtcccgcattatgctagttttgtcccgcatta	Protospacer
*******************************.** *

3. spacer 1.1|11072|36|NZ_CP012709|CRISPRCasFinder matches to MN657110 (Psychrobacter sp. strain ANT_P52 plasmid pA52P2, complete sequence) position: , mismatch: 6, identity: 0.833

ttttgtcccgcattatgctagttttgtcccgtataa	CRISPR spacer
ttttgtcctacattatgctagttttgtcctacatta	Protospacer
********..*******************...** *

4. spacer 1.1|11072|36|NZ_CP012709|CRISPRCasFinder matches to MN657033 (Psychrobacter sp. strain ANT_P15B plasmid pA15BP3, complete sequence) position: , mismatch: 7, identity: 0.806

ttttgtcccgcattatgctagttttgtcccgtataa	CRISPR spacer
ttttgtcctacattatgctagttttgtcccactttg	Protospacer
********..********************.. * .

5. spacer 1.1|11072|36|NZ_CP012709|CRISPRCasFinder matches to MN657110 (Psychrobacter sp. strain ANT_P52 plasmid pA52P2, complete sequence) position: , mismatch: 7, identity: 0.806

ttttgtcccgcattatgctagttttgtcccgtataa	CRISPR spacer
ttttgtcctacattatgctagttttgtcctacttta	Protospacer
********..*******************... * *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012678

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP012709

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection