CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012689	Campylobacter jejuni subsp. jejuni strain RM3197 chromosome, complete genome	2 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	0	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012689_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012689_1

1369661-1369740

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012689_1

>merge|NZ_CP012689|1|1369661-1369740|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP012689|1|1|1369661-1369740|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012689.1\|WP_002780456.1\|1364928_1365753_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NZ_CP012689.1\|WP_002855542.1\|1376599_1378666_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NZ_CP012689.1\|WP_002855326.1\|1375386_1376571_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NZ_CP012689.1\|WP_002855354.1\|1359950_1361291_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
NZ_CP012689.1\|WP_002855407.1\|1363431_1364925_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP012689.1\|WP_002852383.1\|1370042_1371413_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NZ_CP012689.1\|WP_002779147.1\|1361372_1361597_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NZ_CP012689.1\|WP_002855307.1\|1372834_1374196_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP012689.1\|WP_002825806.1\|1372070_1372418_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NZ_CP012689.1\|WP_002855516.1\|1380005_1380965_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|223545
NZ_CP012689.1\|WP_002855339.1\|1369260_1369587_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP012689.1\|WP_002855470.1\|1368687_1369233_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NZ_CP012689.1\|WP_002855528.1\|1365756_1366428_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP012689.1\|WP_002855435.1\|1361593_1363435_+\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP012689.1\|WP_002780453.1\|1367629_1368628_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP012689.1\|WP_002855420.1\|1378742_1379996_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP012689.1\|WP_002855429.1\|1371534_1372071_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NZ_CP012689.1\|WP_002855518.1\|1372418_1372838_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012689.1\|WP_002855346.1\|1374192_1375314_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012689.1\|WP_002855324.1\|1366424_1367627_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613

Protein	Function_ID	Function_description	E-value
NZ_CP012689.1\|WP_002780456.1\|1364928_1365753_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP012689.1\|WP_002855542.1\|1376599_1378666_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP012689.1\|WP_002855326.1\|1375386_1376571_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP012689.1\|WP_002855354.1\|1359950_1361291_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	6.39541e-118
NZ_CP012689.1\|WP_002855407.1\|1363431_1364925_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	4.17824e-157
NZ_CP012689.1\|WP_002852383.1\|1370042_1371413_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP012689.1\|WP_002779147.1\|1361372_1361597_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP012689.1\|WP_002855307.1\|1372834_1374196_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.74847e-77
NZ_CP012689.1\|WP_002825806.1\|1372070_1372418_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.71491e-40
NZ_CP012689.1\|WP_002855339.1\|1369260_1369587_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	8.97235e-38
NZ_CP012689.1\|WP_002855470.1\|1368687_1369233_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.16494e-57
NZ_CP012689.1\|WP_002855528.1\|1365756_1366428_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.79646e-86
NZ_CP012689.1\|WP_002855435.1\|1361593_1363435_+\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP012689.1\|WP_002780453.1\|1367629_1368628_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.96117e-168
NZ_CP012689.1\|WP_002855420.1\|1378742_1379996_-\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	4.25585e-28
NZ_CP012689.1\|WP_002855429.1\|1371534_1372071_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	2.19231e-91
NZ_CP012689.1\|WP_002855516.1\|1380005_1380965_-\|pyruvate-kinase	gnl\|CDD\|223545	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism].	4.5553e-63
NZ_CP012689.1\|WP_002855324.1\|1366424_1367627_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0

>NZ_CP012689.1|WP_002855339.1|1369260_1369587_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP012689.1|WP_002855470.1|1368687_1369233_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVILEALEKLDIDKLIIMPTYINPFKQNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_CP012689.1|WP_002780453.1|1367629_1368628_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP012689.1|WP_002855324.1|1366424_1367627_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP012689.1|WP_002855528.1|1365756_1366428_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP012689.1|WP_002780456.1|1364928_1365753_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP012689.1|WP_002855407.1|1363431_1364925_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYTFIEQNFDENPMPSKDFWKYLEISFILVKGEFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS
>NZ_CP012689.1|WP_002855435.1|1361593_1363435_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWYLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKSIEPIFQPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN
>NZ_CP012689.1|WP_002779147.1|1361372_1361597_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP012689.1|WP_002855354.1|1359950_1361291_+|MmgE/PrpD-family-protein
MFYSEILADFIFNLKYENIPNAVVQRAKELMLDSLGTAIAASKEECVLNAFKAFENLSTEKNTPIWINDQKLDPIYAAMLDGIASHALDFDDTHTEAILHASAILTPLCLSYGFHVSKDAKKIIKAFIIGWEIAARVGIASKGTFHKRGFHTTAIAGIFGSVSASAILLDLNKEQIINALGLAGSFASGVNEFLSNGSNSKVLHIANAIKNGIMVAHFAKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELNKALGEIWQTMQVSIKPYPSCHFAHGLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLMALGFFDGKITLNSYENLKREEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGHIIQKDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF
>NZ_CP012689.1|WP_002852383.1|1370042_1371413_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAKPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTYVFCGDELCYLFAKNIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEIKARLKN
>NZ_CP012689.1|WP_002855429.1|1371534_1372071_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP012689.1|WP_002825806.1|1372070_1372418_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAIV
>NZ_CP012689.1|WP_002855518.1|1372418_1372838_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFIISRNLDKQTIGK
>NZ_CP012689.1|WP_002855307.1|1372834_1374196_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAIIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKDSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKREL
>NZ_CP012689.1|WP_002855346.1|1374192_1375314_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKTDLNKIEKNEQFPFFQISCEGVETKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGIMQERIKLFANTIVDKLKQNESKQDYELILVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKAGEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP012689.1|WP_002855326.1|1375386_1376571_-|capsule-polysaccharide-modification-protein-KpsS
MKISKKLQQEFTSKNVLLLQGPVGNFFHHLAVKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLKTTQFNGNFYKNFFLDK
>NZ_CP012689.1|WP_002855542.1|1376599_1378666_-|capsular-polysaccharide-biosynthesis-protein
MKYYSTSKKLIANARNFYSIFLYKKNLKINKDDLFFGWGCKKSGLKAMNLAKKHKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDGTMPSKLENLLNTYEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASLEFGLAKDFKTVDMIKDAIKENPDSKIYIKIHPDVLSGKKQSDLDINSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYSEYFNPCLNQKSNIFDTIQTLAKYKDIEKVNSNRLFMLGFTLWKRHFIKPFFKAKDNEIIFLNSIKSLVRYKLKEDDKFFIWGKKYDENTLKNLLLTKAKEQNLTNFSPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHENLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRAKNQDAYIIFKPHPDVLSGNRVGLKDEKLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKHKCERRTRKLSLEELVAGALITYPRYINPKTKILCEIEVCLDIMLNLQKDYFSKSYLKIIIDLRNFLLRRMRRIVENIIK
>NZ_CP012689.1|WP_002855420.1|1378742_1379996_-|cation:proton-antiporter
MKFESLSPENISIIFLSLGVLLFSSFVFGKLFTLFKAPKVIGEIFGGFVLGASGLYIFAPDLLTDIFNGFNEQGKILNIFYQLGLIFLMFIAGFNTQISFEKQNIKIISTLFLGGTFLSAGVGYFFIDYFKESFIGIKGNDLSFDLVFLIAIAVTSIPVISKIFFDIGVIKTRFASIVLTTSTIQDLFLWILLNITINAATNQDLTLMSNLKTAFLTLFLFIAVKVISHFLEKISFRMNTIDFFTLSFVVLFLSIAFLNMIHINPMYTSFLVGFLIKNILNNHQELREKVSGLSDMAFSFFIPVYFALIGIQLNIMHEFSFSMFIFFLVLACLLKFLGCYIGLNFVKISNISRINFAITMNARGGPGIVLASVAYYYQIINVSFFTTLILTVLISSMMAGYWLRYQKNKNINIFSEF
>NZ_CP012689.1|WP_002855516.1|1380005_1380965_-|pyruvate-kinase
MKKLILTTGPSLGGKINLNQIHQDKFIYRINGAHGDIESIKNTIINLRKQKADIDILIDLPGNKIRTSGISEAIQVEKDKDFSLKIDQFNYKEFYKLVKPGMEVYANDSVFLFIVKEVNDKEIIFTSKSTGLLLNNKGMHVRNLHDNIPFLFEKDKELIKLCNEFDIAYVGASFVRKASDIQEIKQVLHSNTKIISKIETLEAVNNLYSILQEVEYILIDRGDLSTEIGIEKIPRFQNYIVEMAHHNAIKVFLATQILKNMEEKPIPTIAEIDDLYNIAKSGVFGVQLSEETAVGHYVEECVKILNLMQDEINNEKIIL

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Crispr_ID: NZ_CP012689_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012689_2

1485456-1485556

TypeII

Consensus_repeat	Method
TTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAG	CRISPRCasFinder

1 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP012689_2

>merge|NZ_CP012689|2|1485456-1485556|CRISPRCasFinder
TTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGGCGGTTTAATTAAACTTAAAAATGAAAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAG

>NZ_CP012689|2|2|1485456-1485556|CRISPRCasFinder
TTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAG	GCGGTTTAATTAAACTTAAAAATGAAAAGTT
TTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012689.1\|WP_002855401.1\|1476036_1476678_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP012689.1\|WP_002855546.1\|1487000_1489886_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP012689.1\|WP_002855377.1\|1493943_1494675_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|225539
NZ_CP012689.1\|WP_002855524.1\|1494671_1495709_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP012689.1\|WP_002855520.1\|1493219_1493969_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP012689.1\|WP_002855427.1\|1491567_1492557_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP012689.1\|WP_002855460.1\|1485699_1486131_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP012689.1\|WP_002851546.1\|1495773_1496223_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP012689.1\|WP_002855405.1\|1486123_1487014_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP012689.1\|WP_002851537.1\|1479478_1479670_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP012689.1\|WP_002855459.1\|1480661_1481810_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP012689.1\|WP_002855337.1\|1475107_1476040_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP012689.1\|WP_079263921.1\|1476674_1479479_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NZ_CP012689.1\|WP_002851502.1\|1479644_1480358_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP012689.1\|WP_002779488.1\|1483476_1483698_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP012689.1\|WP_002855371.1\|1483698_1484145_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP012689.1\|WP_002855385.1\|1492617_1493223_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP012689.1\|WP_002855314.1\|1490092_1491547_+\|anaerobic-C4-dicarboxylate-transporter-DcuC	unknown	unknown	gnl\|CDD\|225611
NZ_CP012689.1\|WP_002855335.1\|1481933_1483475_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP012689.1\|WP_002855437.1\|1484148_1485339_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380

Protein	Function_ID	Function_description	E-value
NZ_CP012689.1\|WP_002855401.1\|1476036_1476678_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	7.03516e-57
NZ_CP012689.1\|WP_002855546.1\|1487000_1489886_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP012689.1\|WP_002855377.1\|1493943_1494675_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	1.57422e-98
NZ_CP012689.1\|WP_002855524.1\|1494671_1495709_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.6328e-34
NZ_CP012689.1\|WP_002855520.1\|1493219_1493969_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.16989e-92
NZ_CP012689.1\|WP_002855427.1\|1491567_1492557_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP012689.1\|WP_002855460.1\|1485699_1486131_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.59333e-58
NZ_CP012689.1\|WP_002851546.1\|1495773_1496223_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP012689.1\|WP_002855405.1\|1486123_1487014_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	8.47058e-121
NZ_CP012689.1\|WP_002851537.1\|1479478_1479670_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP012689.1\|WP_002855459.1\|1480661_1481810_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP012689.1\|WP_002855337.1\|1475107_1476040_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	3.02911e-86
NZ_CP012689.1\|WP_079263921.1\|1476674_1479479_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP012689.1\|WP_002851502.1\|1479644_1480358_-\|hypothetical-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NZ_CP012689.1\|WP_002779488.1\|1483476_1483698_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP012689.1\|WP_002855371.1\|1483698_1484145_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.29857e-42
NZ_CP012689.1\|WP_002855385.1\|1492617_1493223_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	6.10073e-70
NZ_CP012689.1\|WP_002855314.1\|1490092_1491547_+\|anaerobic-C4-dicarboxylate-transporter-DcuC	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	6.55616e-71
NZ_CP012689.1\|WP_002855335.1\|1481933_1483475_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	9.25542e-121
NZ_CP012689.1\|WP_002855437.1\|1484148_1485339_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	4.87129e-141

>NZ_CP012689.1|WP_002855437.1|1484148_1485339_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKALKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHIGVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILITTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNVEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP012689.1|WP_002855371.1|1483698_1484145_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MEHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP012689.1|WP_002779488.1|1483476_1483698_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP012689.1|WP_002855335.1|1481933_1483475_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPQIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKENIELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP012689.1|WP_002855459.1|1480661_1481810_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGVRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP012689.1|WP_002851502.1|1479644_1480358_-|hypothetical-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP012689.1|WP_002851537.1|1479478_1479670_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP012689.1|WP_079263921.1|1476674_1479479_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKMSNEQAYYVRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP012689.1|WP_002855401.1|1476036_1476678_-|4Fe-4S-dicluster-domain-containing-protein
MNKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP012689.1|WP_002855337.1|1475107_1476040_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP012689.1|WP_002855460.1|1485699_1486131_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSVKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>NZ_CP012689.1|WP_002855405.1|1486123_1487014_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQVSLSSALFNAFAKHKIILLTCDETHSINGIFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALISNLQSKINFNGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP012689.1|WP_002855546.1|1487000_1489886_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNNGDEEKGKILKAIKQNEEKLVNYQSVGEYLYKEYFQKFKENSKEFINVRNKKESYERCITQSFLKYELKLIFQKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFSDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNIGFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKLSDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDNVKWQKIEVLAKNLPEKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAAIIAYANNSIVKDFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTSSTVSLIVSKHDNKFETLSKNLKVFEKYIVSALGEVTKAEFRQREDFKNELR
>NZ_CP012689.1|WP_002855314.1|1490092_1491547_+|anaerobic-C4-dicarboxylate-transporter-DcuC
MPIFMICSTLLAVIVVTYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKAPSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINASAKLAFLANKPLGKIKNKYLILSGTFVVGMALKIVISSYAGLLLLLLACIYPVLISLKIRPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVVVIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFYILFPWLPVVFLFTAYFFTIKLDVVTANFVSISLVFLVEFARHRNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGIKALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNAFGKLAPDIATKLDVAPITLVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLLIAMLVNVLVAFYLAQTNPLPKEQNTTKIELKIQK
>NZ_CP012689.1|WP_002855427.1|1491567_1492557_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP012689.1|WP_002855385.1|1492617_1493223_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM
>NZ_CP012689.1|WP_002855520.1|1493219_1493969_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFNTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS
>NZ_CP012689.1|WP_002855377.1|1493943_1494675_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP012689.1|WP_002855524.1|1494671_1495709_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSLGF
>NZ_CP012689.1|WP_002851546.1|1495773_1496223_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	MN530981	Campylobacter phage DA10, complete genome	4530-4560	3	0.903
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	63373-63403	5	0.839
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP048772	Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence	9244-9274	5	0.839
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP053970	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence	196938-196968	6	0.806
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP053979	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence	105150-105180	6	0.806
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP013277	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence	323472-323502	6	0.806
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP039723	Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence	90873-90903	6	0.806
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP009348	Bacillus thuringiensis HD1002 plasmid 2, complete sequence	323474-323504	6	0.806
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP045024	Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence	323084-323114	6	0.806
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NC_018516	Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence	233509-233539	6	0.806
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP009334	Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence	167706-167736	6	0.806
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	MN694165	Marine virus AFVG_250M579, complete genome	21622-21652	7	0.774
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	477614-477644	8	0.742
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	661904-661934	8	0.742
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	968484-968514	8	0.742
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	1098905-1098935	8	0.742
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP020744	Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence	162646-162676	8	0.742
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	MN047793	Xanthomonas phage Xoo-sp13, complete genome	291072-291102	8	0.742
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP051863	Acinetobacter baumannii strain Ab-C102 plasmid pAb-C102_1, complete sequence	10658-10688	9	0.71
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	263885-263915	9	0.71
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	329266-329296	9	0.71
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	406987-407017	9	0.71
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	267583-267613	9	0.71
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NC_020292	Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence	55673-55703	9	0.71
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	JN700521	Staphylococcus phage StB20, complete genome	8440-8470	9	0.71
NZ_CP012689_1	1.1\|1369684\|34\|NZ_CP012689\|CRISPRCasFinder	1369684-1369717	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP020115	Nodularia spumigena UHCC 0039 plasmid pUHCC0039a, complete sequence	24551-24581	10	0.677
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	NZ_CP040857	Lactobacillus plantarum strain 202195 plasmid unnamed, complete sequence	12950-12980	10	0.677
NZ_CP012689_2	2.1\|1485491\|31\|NZ_CP012689\|CRISPRCasFinder	1485491-1485521	31	CP024688	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-4-144K, complete sequence	144085-144115	10	0.677

1. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 3, identity: 0.903

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
gtggtttaattaaacttaaaaatgaaagatt	Protospacer
*.*************************..**

2. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 5, identity: 0.839

gcggttt----aattaaacttaaaaatgaaaagtt	CRISPR spacer
----tttaagaaattaaacttaaaaatgaaaattt	Protospacer
    ***    ********************* **

3. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 5, identity: 0.839

gcggttt----aattaaacttaaaaatgaaaagtt	CRISPR spacer
----tttaagaaattaaacttaaaaatgaaaattt	Protospacer
    ***    ********************* **

4. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP053970 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.806

-gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
tgcag-taaattaaacttaaacatgaaacgtc	Protospacer
 **.* * ************* ****** **.

5. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP053979 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.806

-gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
tgcag-taaattaaacttaaacatgaaacgtc	Protospacer
 **.* * ************* ****** **.

6. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP013277 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence) position: , mismatch: 6, identity: 0.806

-gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
tgcag-taaattaaacttaaacatgaaacgtc	Protospacer
 **.* * ************* ****** **.

7. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP039723 (Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.806

-gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
tgcag-taaattaaacttaaacatgaaacgtc	Protospacer
 **.* * ************* ****** **.

8. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP009348 (Bacillus thuringiensis HD1002 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.806

-gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
tgcag-taaattaaacttaaacatgaaacgtc	Protospacer
 **.* * ************* ****** **.

9. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP045024 (Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.806

-gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
tgcag-taaattaaacttaaacatgaaacgtc	Protospacer
 **.* * ************* ****** **.

10. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NC_018516 (Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence) position: , mismatch: 6, identity: 0.806

-gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
tgcag-taaattaaacttaaacatgaaacgtc	Protospacer
 **.* * ************* ****** **.

11. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP009334 (Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.806

-gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
tgcag-taaattaaacttaaacatgaaacgtc	Protospacer
 **.* * ************* ****** **.

12. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to MN694165 (Marine virus AFVG_250M579, complete genome) position: , mismatch: 7, identity: 0.774

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
gagatttaattagacttgaaaatgaaatatg	Protospacer
* *.********.****.********* .*

13. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 8, identity: 0.742

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
ttgagttaattaaacttaataatgaaatatg	Protospacer
 .*. ************** ******* .*

14. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 8, identity: 0.742

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
ttgagttaattaaacttaataatgaaatatg	Protospacer
 .*. ************** ******* .*

15. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.742

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
gagccttaattaatcttaaaaatgaaatcga	Protospacer
* * .******** *************

16. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 8, identity: 0.742

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
ttgagttaattaaacttaataatgaaatatg	Protospacer
 .*. ************** ******* .*

17. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
ccttatcaatttaacttaaaaattaaaagta	Protospacer
 *   *.**** *********** ******

18. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to MN047793 (Xanthomonas phage Xoo-sp13, complete genome) position: , mismatch: 8, identity: 0.742

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
gttgtttaattaatcttaaaaataaagtgac	Protospacer
*. ********** *********.**. * .

19. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP051863 (Acinetobacter baumannii strain Ab-C102 plasmid pAb-C102_1, complete sequence) position: , mismatch: 9, identity: 0.71

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
gtcgtttaattaaacttaaagatgatcgtga	Protospacer
*. *****************.****  .

20. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.71

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
cgaatttaattaaatataaaaatgaaaacaa	Protospacer
  ..**********. ************

21. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 9, identity: 0.71

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
cgaatttaattaaatataaaaatgaaaaaaa	Protospacer
  ..**********. ************.

22. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 9, identity: 0.71

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
cgaatttaattaaatataaaaatgaaaaaaa	Protospacer
  ..**********. ************.

23. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 9, identity: 0.71

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
cgaatttaattaaatataaaaatgaaaaaaa	Protospacer
  ..**********. ************.

24. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NC_020292 (Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence) position: , mismatch: 9, identity: 0.71

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
ctaatttaattaaagtgaaaaatgaaattgt	Protospacer
 ...********** * **********   *

25. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to JN700521 (Staphylococcus phage StB20, complete genome) position: , mismatch: 9, identity: 0.71

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
aaaataaaattaaacctaaaaataaaaagtc	Protospacer
. ..*  ********.*******.******.

26. spacer 1.1|1369684|34|NZ_CP012689|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

27. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP020115 (Nodularia spumigena UHCC 0039 plasmid pUHCC0039a, complete sequence) position: , mismatch: 10, identity: 0.677

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
tttatttaattaaactgaaaaatcaaataga	Protospacer
 . .************ ****** *** .

28. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to NZ_CP040857 (Lactobacillus plantarum strain 202195 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
attctttaattaaacttaacaattaaagtga	Protospacer
..  *************** *** ***.

29. spacer 2.1|1485491|31|NZ_CP012689|CRISPRCasFinder matches to CP024688 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-4-144K, complete sequence) position: , mismatch: 10, identity: 0.677

gcggtttaattaaacttaaaaatgaaaagtt	CRISPR spacer
atatgttaattaaaattaaaaatgcaaaaaa	Protospacer
...  ********* ********* ***.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

650631 : 763839

108

Campylobacter_phage(35.14%)

transposase,plate,integrase,terminase,tail,tRNA

attL 643845:643862|attR 689889:689906

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
643845:643862	attL	NA	NA	NA	NA
WP_002855162.1\|650631_651495_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_002854814.1\|651481_652207_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_002855087.1\|652216_652933_+	hypothetical protein	NA	NA	NA	NA
WP_002854826.1\|652929_654087_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_002855240.1\|654067_654820_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	3.7e-05	31.8
WP_002854913.1\|654887_656225_+	signal recognition particle protein	NA	NA	NA	NA
WP_002852274.1\|656289_656517_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_002852144.1\|656519_656762_+	KH domain-containing protein	NA	NA	NA	NA
WP_002855099.1\|656754_657294_+	16S rRNA processing protein RimM	NA	NA	NA	NA
WP_002868040.1\|657290_657995_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_002854824.1\|658005_658362_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_002852246.1\|658494_658908_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_002855114.1\|658931_660272_+	3-deoxy-7-phosphoheptulonate synthase class II	NA	NA	NA	NA
WP_002854966.1\|660268_660598_+	ArsC family transcriptional regulator	NA	NA	NA	NA
WP_002855134.1\|661045_664648_+	DNA polymerase III subunit alpha	A0A291AWR1	Streptomyces_phage	4.4e-197	37.3
WP_002855231.1\|664660_665293_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_002854849.1\|665328_666078_-	flagellin	NA	NA	NA	NA
WP_002854939.1\|666116_666587_-	DUF4149 domain-containing protein	NA	NA	NA	NA
WP_002855085.1\|666599_667415_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_002854804.1\|667411_668599_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_002804144.1\|669471_670146_-	LexA family transcriptional regulator	X2KRC9	Campylobacter_phage	9.8e-26	32.1
WP_002804142.1\|670295_670496_+	hypothetical protein	NA	NA	NA	NA
WP_002855011.1\|670492_672568_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_002854986.1\|672738_673662_+	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	6.7e-09	24.5
WP_002791422.1\|673664_673856_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002824157.1\|673852_674038_+	hypothetical protein	NA	NA	NA	NA
WP_002791419.1\|674170_674512_+	hypothetical protein	NA	NA	NA	NA
WP_002854978.1\|674618_675104_+	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	4.9e-19	33.3
WP_002854846.1\|675162_676125_+	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|676121_676391_+	hypothetical protein	NA	NA	NA	NA
WP_002855209.1\|676390_677083_+	hypothetical protein	NA	NA	NA	NA
WP_002855205.1\|677079_677529_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_002793905.1\|677575_677851_+	hypothetical protein	NA	NA	NA	NA
WP_002854863.1\|677842_678514_-	deoxyribonuclease	NA	NA	NA	NA
WP_002784523.1\|678607_678892_+	DNA-binding protein	NA	NA	NA	NA
WP_032589440.1\|679037_679400_+	hypothetical protein	NA	NA	NA	NA
WP_002855003.1\|679420_680398_-\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_002784520.1\|680391_680583_-\|tail	tail protein	NA	NA	NA	NA
WP_002784519.1\|680575_680950_-\|tail	tail protein	NA	NA	NA	NA
WP_002855219.1\|683690_685361_-\|terminase	phage terminase large subunit	A0A0A1IW02	Pseudomonas_phage	5.7e-91	41.1
WP_002855185.1\|685951_686410_-	DUF1320 family protein	NA	NA	NA	NA
WP_002855090.1\|686525_687503_-	hypothetical protein	R9TRN2	Rhizobium_phage	9.6e-06	23.4
WP_002854943.1\|687505_688033_-	hypothetical protein	NA	NA	NA	NA
WP_002854806.1\|688035_688851_-	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_002784501.1\|688852_689287_-	hypothetical protein	NA	NA	NA	NA
WP_002854767.1\|689434_689824_+	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	5.0e-22	47.1
WP_002854893.1\|689834_690176_+	hypothetical protein	NA	NA	NA	NA
689889:689906	attR	NA	NA	NA	NA
WP_002784496.1\|690172_690421_+	hypothetical protein	NA	NA	NA	NA
WP_002784492.1\|690532_690847_+	hypothetical protein	NA	NA	NA	NA
WP_002855218.1\|690846_691479_+\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	1.7e-08	34.6
WP_002855222.1\|691487_691679_+	hypothetical protein	NA	NA	NA	NA
WP_002795239.1\|691675_691966_+\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_002854791.1\|691962_693129_+\|plate	baseplate assembly protein	Q8H9N3	Vibrio_phage	1.0e-14	24.9
WP_002855112.1\|693125_693746_+\|tail	phage tail protein I	A7YH02	Campylobacter_phage	8.7e-61	100.0
WP_002855275.1\|693745_694777_+\|tail	phage tail protein	A7YH00	Campylobacter_phage	4.3e-190	100.0
WP_002855083.1\|694801_695308_+	DUF4376 domain-containing protein	A7YGH8	Campylobacter_phage	3.4e-87	100.0
WP_002938257.1\|695304_695676_+	DUF1353 domain-containing protein	A7YGH7	Campylobacter_phage	1.5e-68	100.0
WP_002855241.1\|695775_696783_+	hypothetical protein	A7YGZ7	Campylobacter_phage	1.7e-191	100.0
WP_002854830.1\|696801_697995_+\|tail	tail sheath protein	A7YGZ6	Campylobacter_phage	2.1e-196	99.7
WP_002854988.1\|698018_698528_+\|tail	tail protein	A7YGZ4	Campylobacter_phage	2.5e-90	100.0
WP_002855254.1\|698727_698922_+\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	2.8e-26	100.0
WP_002854911.1\|699395_701612_+\|tail	phage tail tape measure protein	A7YGZ1	Campylobacter_phage	0.0e+00	99.5
WP_002854976.1\|702209_703064_+	DNA adenine methylase	A7YGW6	Campylobacter_phage	1.2e-140	89.9
WP_002801718.1\|703501_704053_+	ImmA/IrrE family metallo-endopeptidase	Q332A2	Clostridium_botulinum_C_phage	2.1e-10	32.7
WP_002801720.1\|704049_704334_-	hypothetical protein	A7YG83	Campylobacter_phage	4.2e-47	97.9
WP_002855102.1\|704392_705022_-	S24 family peptidase	A7YG70	Campylobacter_phage	7.0e-58	93.8
WP_002855200.1\|705260_707162_+	hypothetical protein	NA	NA	NA	NA
WP_002825403.1\|707736_707922_+	hypothetical protein	NA	NA	NA	NA
WP_002854948.1\|707918_708461_-	molybdopterin adenylyltransferase	NA	NA	NA	NA
WP_002854937.1\|708481_709465_-	magnesium/cobalt transporter CorA	NA	NA	NA	NA
WP_002855035.1\|709582_710629_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_002855016.1\|710639_711965_+	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_072238619.1\|711961_712771_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_002854833.1\|712767_713607_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_002855236.1\|713607_714387_+	ABC transporter permease	NA	NA	NA	NA
WP_002855064.1\|714390_715380_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-34	40.4
WP_002854882.1\|715376_716015_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_054268623.1\|716038_716794_-	basic amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_032600210.1\|717774_719703_+	hypothetical protein	NA	NA	NA	NA
WP_002854810.1\|719714_720149_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_002855164.1\|723091_724780_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_002780047.1\|732463_732727_+	hypothetical protein	NA	NA	NA	NA
WP_004297913.1\|732731_733286_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1S5RHD5	Helicobacter_phage	4.5e-53	61.0
WP_002859789.1\|733376_734060_-	energy transducer TonB	NA	NA	NA	NA
WP_004297959.1\|734384_736487_+	TonB-dependent siderophore receptor	A0A0P0I887	Acinetobacter_phage	4.9e-07	27.9
WP_011049776.1\|736787_737582_+	HrcA family transcriptional regulator	NA	NA	NA	NA
WP_002867979.1\|737578_738106_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_002826316.1\|738127_739999_+	molecular chaperone DnaK	A0A167RF67	Powai_lake_megavirus	1.8e-149	47.1
WP_004297858.1\|742035_743337_+	restriction endonuclease subunit S	F2Y1N5	Organic_Lake_phycodnavirus	3.0e-15	45.0
WP_004297866.1\|743350_743857_+	ATP-binding protein	E5E3R2	Burkholderia_phage	3.8e-06	37.3
WP_021137767.1\|743887_744871_+	ATP-binding protein	NA	NA	NA	NA
WP_004297851.1\|744873_747789_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_002869342.1\|747815_748847_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_002857179.1\|748916_749258_+	cupin domain-containing protein	NA	NA	NA	NA
WP_004297943.1\|749307_750477_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_002857174.1\|750648_751287_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_054268624.1\|751287_753123_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_002856972.1\|753119_754346_-\|tRNA	histidine--tRNA ligase	A0A1V0SFH3	Hokovirus	7.5e-24	26.3
WP_002856897.1\|754342_754921_-	dTMP kinase	A0A1L2BX49	Bacteriophage	9.0e-12	33.7
WP_002852633.1\|754911_755388_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.5e-23	39.5
WP_002857001.1\|755427_755991_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_002852578.1\|755987_756650_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_004297839.1\|756733_757510_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002857015.1\|757519_758290_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002857086.1\|758338_759112_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010790890.1\|759303_760215_-	ABC transporter permease	NA	NA	NA	NA
WP_004297923.1\|760211_761222_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.8e-32	38.3
WP_004297846.1\|761226_763839_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	2.9e-150	41.7

DBSCAN-SWA_2

1386184 : 1393503

Synechococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002855417.1\|1386184_1386850_-	NTP transferase domain-containing protein	A0A222YXG2	Synechococcus_phage	1.3e-09	31.8
WP_002855317.1\|1386837_1387443_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	7.0e-15	33.7
WP_002855449.1\|1387463_1388699_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_002855374.1\|1388686_1389706_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	6.0e-59	39.9
WP_002855490.1\|1389702_1390734_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.0e-147	73.6
WP_002855309.1\|1390742_1391804_-	GDP-L-fucose synthase	M1HKX0	Paramecium_bursaria_Chlorella_virus	2.4e-87	50.1
WP_002855441.1\|1391884_1392958_-	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	1.9e-79	43.2
WP_002826217.1\|1392957_1393503_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	3.7e-15	29.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012689

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection