CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP012660	Lactiplantibacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK06, complete sequence	0 crisprs	NA	0	0	0
NZ_CP012656	Lactiplantibacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK08, complete sequence	0 crisprs	NA	0	0	0
NZ_CP012651	Lactiplantibacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK03, complete sequence	0 crisprs	NA	0	0	0
NZ_CP012658	Lactiplantibacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK09, complete sequence	0 crisprs	NA	0	0	0
NZ_CP012657	Lactiplantibacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK01, complete sequence	0 crisprs	NA	0	0	5
NZ_CP012652	Lactiplantibacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK04, complete sequence	0 crisprs	NA	0	0	0
NZ_CP012654	Lactiplantibacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK10, complete sequence	0 crisprs	NA	0	0	0
NZ_CP012659	Lactiplantibacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK05, complete sequence	0 crisprs	NA	0	0	0
NZ_CP012653	Lactiplantibacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK07, complete sequence	0 crisprs	NA	0	0	1
NZ_CP012655	Lactiplantibacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK02, complete sequence	0 crisprs	NA	0	0	0
NZ_CP012650	Lactiplantibacillus plantarum strain HFC8 isolate Lactobacillus plantarum chromosome, complete genome	3 crisprs	DinG,DEDDh,cas3,csa3,WYL	1	1	16

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 52458

Streptococcus_phage(25.0%)

holin,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060678033.1\|647_1001_-	hypothetical protein	NA	NA	NA	NA
WP_046038930.1\|1800_3192_+	MATE family efflux transporter	NA	NA	NA	NA
WP_046041507.1\|4581_5946_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	5.3e-10	22.9
WP_035454452.1\|6077_6464_-	hypothetical protein	NA	NA	NA	NA
WP_046041504.1\|7123_7378_-	hypothetical protein	NA	NA	NA	NA
WP_052697228.1\|7499_7781_+	BRCT domain-containing protein	NA	NA	NA	NA
WP_060678035.1\|7963_10678_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_016526621.1\|10804_11023_+	hypothetical protein	NA	NA	NA	NA
WP_080339152.1\|11023_12835_+	LtrC	NA	NA	NA	NA
WP_027822898.1\|12901_13225_+	hypothetical protein	NA	NA	NA	NA
WP_046041500.1\|13297_13696_-	hypothetical protein	NA	NA	NA	NA
WP_046041498.1\|13688_14009_-	hypothetical protein	NA	NA	NA	NA
WP_060678036.1\|14001_15303_-	Y-family DNA polymerase	M1Q231	Streptococcus_phage	8.4e-82	39.7
WP_027822894.1\|15416_15728_+	hypothetical protein	NA	NA	NA	NA
WP_016526748.1\|15997_16267_-	hypothetical protein	NA	NA	NA	NA
WP_046041494.1\|16253_17156_-	AAA family ATPase	F0PIG8	Enterococcus_phage	4.1e-27	32.1
WP_060678037.1\|17997_19536_+	primase C-terminal domain-containing protein	NA	NA	NA	NA
WP_060678038.1\|19845_22482_+	hypothetical protein	NA	NA	NA	NA
WP_060678039.1\|22753_23137_+	hypothetical protein	NA	NA	NA	NA
WP_060678040.1\|23108_23768_+	hypothetical protein	NA	NA	NA	NA
WP_060678041.1\|23783_25736_+	hypothetical protein	NA	NA	NA	NA
WP_046041473.1\|25738_25945_+	hypothetical protein	NA	NA	NA	NA
WP_046041471.1\|25945_27109_+	CHAP domain-containing protein	A0A0A0RSI6	Bacillus_phage	1.7e-09	34.8
WP_046041470.1\|27121_27751_+	hypothetical protein	NA	NA	NA	NA
WP_060678042.1\|28568_29531_+	hypothetical protein	A0A2H4JAH5	uncultured_Caudovirales_phage	1.4e-36	49.2
WP_060678043.1\|29527_29743_+	hypothetical protein	NA	NA	NA	NA
WP_016526759.1\|29744_29963_+	hypothetical protein	NA	NA	NA	NA
WP_046041464.1\|29959_30259_+	hypothetical protein	NA	NA	NA	NA
WP_060678044.1\|30255_30681_+	thioredoxin family protein	NA	NA	NA	NA
WP_080376324.1\|30699_31608_+	hypothetical protein	NA	NA	NA	NA
WP_016526763.1\|31893_32190_+	hypothetical protein	NA	NA	NA	NA
WP_016526764.1\|32191_32692_+	hypothetical protein	NA	NA	NA	NA
WP_056988523.1\|32709_33177_+	hypothetical protein	NA	NA	NA	NA
WP_060678046.1\|33148_35338_+	hypothetical protein	NA	NA	NA	NA
WP_060678047.1\|35339_35975_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_006293514.1\|36255_36360_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_060678048.1\|36800_36938_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_060678049.1\|37469_39632_+	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	1.5e-104	47.3
WP_060678050.1\|39789_40056_+	hypothetical protein	NA	NA	NA	NA
WP_060678051.1\|40086_40725_+	hypothetical protein	NA	NA	NA	NA
WP_060678052.1\|40800_41766_+	DUF3991 and TOPRIM domain-containing protein	NA	NA	NA	NA
WP_060678053.1\|41762_41957_+	hypothetical protein	NA	NA	NA	NA
WP_060678054.1\|41959_42592_+	hypothetical protein	NA	NA	NA	NA
WP_060678055.1\|42594_44379_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2C9CXH0	Yersinia_phage	2.0e-81	35.7
WP_016526775.1\|44445_44760_+	hypothetical protein	NA	NA	NA	NA
WP_060678056.1\|44855_46976_+	hypothetical protein	NA	NA	NA	NA
WP_060678057.1\|46985_47774_+	class A sortase	NA	NA	NA	NA
WP_060678058.1\|47802_50742_+	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA
WP_046041437.1\|50818_51115_+	hypothetical protein	NA	NA	NA	NA
WP_003645717.1\|51615_52458_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.7e-155	98.6

DBSCAN-SWA_2

58416 : 63557

Escherichia_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060678065.1\|58416_59286_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	1.0e-99	60.5
WP_060678066.1\|59289_59871_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-37	45.3
WP_027822971.1\|59880_60909_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.0e-71	45.1
WP_060678067.1\|60941_61778_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.6e-33	36.4
WP_060678068.1\|61793_62459_+	sugar transferase	NA	NA	NA	NA
WP_080376325.1\|62636_63557_+\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	8.4e-52	38.6

DBSCAN-SWA_3

67550 : 68480

unidentified_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003561810.1\|67550_68480_-\|transposase	IS30-like element ISLpl1 family transposase	H7BW47	unidentified_phage	3.0e-25	34.4

DBSCAN-SWA_4

71684 : 76919

Indivirus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060678077.1\|71684_72617_+	NAD-dependent epimerase/dehydratase family protein	A0A1V0SKV4	Klosneuvirus	4.0e-25	29.6
WP_060678078.1\|72613_73762_+	glycoside hydrolase family 99-like domain-containing protein	A0A1V0SDW6	Indivirus	7.3e-29	27.0
WP_060678079.1\|73758_75009_+	oligosaccharide repeat unit polymerase	NA	NA	NA	NA
WP_144425367.1\|74981_75932_+	hypothetical protein	NA	NA	NA	NA
WP_060678081.1\|75932_76919_+	glycosyltransferase family 92 protein	A0A1V0SD50	Indivirus	6.5e-18	26.9

DBSCAN-SWA_5

82370 : 83735

Erysipelothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046041507.1\|82370_83735_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	5.3e-10	22.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012653

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1941 : 10728

Lactobacillus_phage(100.0%)

holin,integrase

attL 3280:3292|attR 6741:6753

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060677999.1\|1941_2229_+	hypothetical protein	E9LUS4	Lactobacillus_phage	2.7e-33	91.8
WP_060677850.1\|2346_2661_+	hypothetical protein	E9LUS3	Lactobacillus_phage	2.3e-49	98.1
WP_060677849.1\|2824_3139_+	hypothetical protein	NA	NA	NA	NA
WP_056988408.1\|3210_3441_-	hypothetical protein	U5U783	Lactobacillus_phage	5.4e-08	47.5
3280:3292	attL	NA	NA	NA	NA
WP_144425354.1\|3464_3959_+	hypothetical protein	U5U717	Lactobacillus_phage	1.8e-24	41.7
WP_060677846.1\|4362_5499_+\|integrase	site-specific integrase	E9LUS1	Lactobacillus_phage	2.7e-209	97.4
WP_060677887.1\|6204_6585_-\|holin	holin	A0A2H4PBB2	Lactobacillus_phage	6.3e-14	83.3
WP_015825361.1\|6596_6860_-	hemolysin XhlA family protein	E9LUR9	Lactobacillus_phage	7.4e-38	98.9
6741:6753	attR	NA	NA	NA	NA
WP_060677886.1\|6859_8017_-	LysM peptidoglycan-binding domain-containing protein	E9LUR8	Lactobacillus_phage	3.7e-190	86.4
WP_060677885.1\|8028_8241_-	hypothetical protein	A0A0A1ENR9	Lactobacillus_phage	9.6e-20	85.2
WP_144425363.1\|8357_8792_-	hypothetical protein	NA	NA	NA	NA
WP_162490437.1\|9233_9377_-	hypothetical protein	E9LUR6	Lactobacillus_phage	1.1e-14	95.6
WP_160316031.1\|10569_10728_-	hypothetical protein	A0A2P0ZLG5	Lactobacillus_phage	4.0e-07	74.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP012650

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012650_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012650_1

1668123-1668300

Orphan

Consensus_repeat	Method
ACCAGCACATCAACTGCTAGTGCAAGCAGTG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP012650_1

>merge|NZ_CP012650|1|1668123-1668300|PILER-CR
ACTGCTAGTGCAAGCAGTGCTAAGTCAACTAGTGCCGCAACTTCAACTAGTTCACAAGCTACTAGCGCTGCTGCTACCAGCTCATCAACTACTAGTGCAAGTATTACGAGCCAAGCAGTATCAAGTAGCTCAGTAGCTGCTCAATCAAGTAGCACTTCAACTGCTAGTGCAAGCAGTG

>NZ_CP012650|1|1|1668123-1668300|PILER-CR
ACTGCTAGTGCAAGCAGTGCTAAGTCAACTA	GTGCCGCAACTTCAACTAGTTCACAAGCTACTAGCGCTGCTGCTACCAGCTCATCA
ACTACTAGTGCAAGTATTACGAGCCAAGCAG	TATCAAGTAGCTCAGTAGCTGCTCAATCAAGTAGCACTTCAACTGC
TAGTGCAAGCAGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012650.1\|WP_033607896.1\|1669060_1670464_-\|glutamate-decarboxylase	unknown	unknown	gnl\|CDD\|130848
NZ_CP012650.1\|WP_003645580.1\|1675762_1676515_-\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
NZ_CP012650.1\|WP_003643024.1\|1677243_1677513_+\|metal-sensitive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197390
NZ_CP012650.1\|WP_015379518.1\|1676899_1677220_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP012650.1\|WP_060677449.1\|1677612_1677816_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_060677448.1\|1670636_1670834_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_003643528.1\|1673733_1674237_+\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP012650.1\|WP_003645529.1\|1667200_1667536_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_011373852.1\|1674795_1675716_+\|IS30-like-element-ISLsa1-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP012650.1\|WP_003645533.1\|1672934_1673573_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP012650.1\|WP_011102156.1\|1662838_1663432_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_016511843.1\|1664476_1665397_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP012650.1\|WP_046040828.1\|1660792_1661371_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP012650.1\|WP_046040820.1\|1666040_1666439_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_187329205.1\|1663596_1664049_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP012650.1\|WP_060677444.1\|1661490_1662492_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
NZ_CP012650.1\|WP_015379508.1\|1670935_1672597_-\|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl\|CDD\|236471
NZ_CP012650.1\|WP_060677446.1\|1665444_1666026_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_CP012650.1\|WP_060677445.1\|1662505_1662817_+\|DUF2316-family-protein	unknown	unknown	gnl\|CDD\|370809
NZ_CP012650.1\|WP_003643535.1\|1666713_1667085_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP012650.1\|WP_033607896.1\|1669060_1670464_-\|glutamate-decarboxylase	gnl\|CDD\|130848	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha., glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).	0
NZ_CP012650.1\|WP_003645580.1\|1675762_1676515_-\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	5.85283e-71
NZ_CP012650.1\|WP_003643024.1\|1677243_1677513_+\|metal-sensitive-transcriptional-regulator	gnl\|CDD\|197390	cd10155, BsYrkD-like_DUF156, Uncharacterized protein YrkD from Bacillus subtilis and related domains; this domain superfamily was previously known as part of DUF156. This domain family contains an uncharacterized protein YrkD from Bacillus subtilis and related proteins. This family is part of a larger superfamily that contains various transcriptional regulators that respond to different stressors such as Cu(I), Ni(I), sulfite, and formaldehyde, and includes CsoRs (copper-sensitive operon repressors). CsoRs form homotetramers (dimer of dimers). In Mycobacterium tuberculosis CsoR, within each dimer, two Cys residues on opposite subunits, along with a His residue, bind the Cu(I) ion (forming a triagonal S2N coordination complex, C-H-C). These residues are conserved in the majority of members of this superfamily. In this family, however, not all these residues are conserved, there is an Asn instead of the His (C-N-C); also a conserved Tyr and a Glu residue that facilitates allosteric regulation of DNA binding for CsoRs are very poorly conserved.	4.82572e-31
NZ_CP012650.1\|WP_015379518.1\|1676899_1677220_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	4.33746e-30
NZ_CP012650.1\|WP_003643528.1\|1673733_1674237_+\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.92888e-11
NZ_CP012650.1\|WP_060677446.1\|1665444_1666026_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	6.66948e-09
NZ_CP012650.1\|WP_016511843.1\|1664476_1665397_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.10512e-71
NZ_CP012650.1\|WP_046040828.1\|1660792_1661371_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	0.00349886
NZ_CP012650.1\|WP_187329205.1\|1663596_1664049_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.49437e-12
NZ_CP012650.1\|WP_060677444.1\|1661490_1662492_+\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	7.90742e-45
NZ_CP012650.1\|WP_015379508.1\|1670935_1672597_-\|phosphoenolpyruvate-carboxykinase-(ATP)	gnl\|CDD\|236471	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase.	3.58118e-14
NZ_CP012650.1\|WP_003645533.1\|1672934_1673573_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	6.90642e-09
NZ_CP012650.1\|WP_060677445.1\|1662505_1662817_+\|DUF2316-family-protein	gnl\|CDD\|370809	pfam10078, DUF2316, Uncharacterized protein conserved in bacteria (DUF2316). Members of this family of hypothetical bacterial proteins have no known function.	3.29792e-48
NZ_CP012650.1\|WP_011373852.1\|1674795_1675716_+\|IS30-like-element-ISLsa1-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	4.37768e-76

>NZ_CP012650.1|WP_003645529.1|1667200_1667536_+|hypothetical-protein
MTTVTALETQAGQVLDQSYAQFKQAQLALGKEQIFANAAQIFTVGEIAAATRQYLFDEEIAQQVIKLQDQVLPTMYQQGQSGEFLKLNFTGNDIRWLLGLPRTHHRQRISK
>NZ_CP012650.1|WP_003643535.1|1666713_1667085_-|hypothetical-protein
MTNTDNRYYQPTDIKDALQTIQKLFNTYTDAPLTPELMAYHQKLVNQLATNLLPLAQQQHDKLRITQINSMMAVMQDWLKLRLNGQVFGGKMQHFKFVSNQKAQYKRRVHKIRGNQNHRASRH
>NZ_CP012650.1|WP_046040820.1|1666040_1666439_+|hypothetical-protein
MKKAILLMTMILFVSGTITLNAYAASQSVNVSYKTYGSANGRSNGKTNGVWHYLRNGKYGYLKITSKTGAGKTYASLYRSVVGPDKKFGTVRTSKGSHKFSGKLNKTSGSYYLICYGGNSSVTIHIKGKLHD
>NZ_CP012650.1|WP_060677446.1|1665444_1666026_+|VanZ-family-protein
MMINGHGFGPDYIVDSGIALIVLIPLFLAILVRQISKKRVTFFRISGLIMFFIYIYALIKVTIFPMMIFKFGSKAYRYGFGKQYLANFNVLEISKYTPIQIWGNIALILPLSILIADLWPHKLSAFKFNICVGILTTIGIEMTQLIMAFFYLGSRTFDINDLILNLLGYLLGFCIYKVIKPIFNIESDMFRVF
>NZ_CP012650.1|WP_016511843.1|1664476_1665397_+|IS30-family-transposase
MGISTLSRFQRGALAQLVSEGHHTYQDMADALGVAKSTIHYELNRVKPYDPELAQQDADRKRRACGRHSILTSSLVTLITNHLRLTWSPEAVATAFNLGTASIYNWLNRGWLPFELADLPNRNIRQCRVNEHRGTFTSGTSIEQRPTIVNQRLAFGHWEVDTVLSGRKASRACLVTFVERKTRLLWAIKAPNRTAKALNSAFEKFMGTFGSQVKSITVDHGKEFADYQSIEQDYQIKVYFCHPYSPWERGSNEYFNRRLRWFFPKKTNFGQVTTDEILAALELINQRPLKIHHQQTAIESFRACSD
>NZ_CP012650.1|WP_187329205.1|1663596_1664049_+|helix-turn-helix-domain-containing-protein
MIEHDLAHQLKAARIDKGYSQNYIANILNITRQSVSKWERGLVYPDLDNLIRLSDIYNIPVDNLIRVNHKKQVVEQKDTAKVKVSHENLKVDKVNVLKYQNVMKGLLLMVLSIISTLIAPIGVLIPSYVIWRNSKHNILYKSIIASQLLQ
>NZ_CP012650.1|WP_011102156.1|1662838_1663432_+|nuclear-transport-factor-2-family-protein
MSNGTDMALISELVARERLFRARHNPEIRDCYYADATVATSWQQGPLSTFIGAESKEVDPRFVIVGSVSTPVVHLNGDKAYVELPTTTHMRMMVNGTLAELESYRRLIYRVERRDTKWKISRLTSINESDNLRPVIVGQDLHVIPQDFNGLRSSYQFLAYVRQAAGGQISQDLLGTDRPEEVERLYKETNAWLRAGV
>NZ_CP012650.1|WP_060677445.1|1662505_1662817_+|DUF2316-family-protein
MSLNAQQMQATRNELQANFALTGLTKAQVADDLGISSTKLDHLFDLTQQSLNDPWILRNYLIEKVEAGGKTPVPFTSLSGDWHRHWFLNSAVIDRREMSAGDC
>NZ_CP012650.1|WP_060677444.1|1661490_1662492_+|amidohydrolase
MKLITVEEHFESAAVTAAMRQAVGNAVLPAVSPVLRQYMRDNLPSPAIMQDTQHERLAFMAQYGIDMQVLSYGNSSSQNLSPEQAVPLSQLANDELAKAVVAHPDRYAGLAVLPVGDPQAAVAELNRAVTTLGLRGVLLKGNYQNKFFDEPFFLPIFEAAATLDVPVYFHPSFIPQAVTSHYFESNQWSDVVTGILSSAGYGWHMDVGIQVIRMIASGIFDKLPGLKLISGHWGELVPLFLERLDDELTTYTDLQYPFSTYYRHNVYVTPSGILSAPQLQFMLAEMGADHLMYSIDYPYKQPETSGSFLDIADLTDEQRAQIAFGTATTLFKL
>NZ_CP012650.1|WP_046040828.1|1660792_1661371_-|TetR/AcrR-family-transcriptional-regulator
MTKLIMNNQLHIDQRTHQTHRKLITALQANFKAQKSFNELTVKQLCLDAHVGRATFYRHHQDIEDIIVIEYLIALQQLGHALNDLTTTSYATIAGAIVTTIRAHLGLPLLVSWAQCRERVIPLEVGFAQQLLTSLAIHPKQRHFMATYLGNCLHQLAWQLATTQTTLSKIETYRLFIQLIPNVLQAPTIPTD
>NZ_CP012650.1|WP_033607896.1|1669060_1670464_-|glutamate-decarboxylase
MLYGKHNHEAEEYLEPVFGAPSEQHDLPKYRLPKHSLSPREADRLVRDELLDEGNSRLNLATFCQTYMEPEAVELMKDTLAKNAIDKSEYPRTAEIENRCVNIIANLWHAPDDEHFTGTSTIGSSEACMLGGLAMKFAWRKRAQAAGLDLNAHRPNLVISAGYQVCWEKFCVYWDVDMHVVPMDEQHMALDVNHVLDYVDEYTIGIVGIMGITYTGQYDDLAALDKVVTHYNHQHPKLPVYIHVDAASGGFYTPFIEPQLIWDFRLANVVSINASGHKYGLVYPGVGWVVWRDRQFLPPELVFKVSYLGGELPTMAINFSHSAAQLIGQYYNFIRFGMDGYREIQTKTHDVARYLAAALDKVGEFKMINNGHQLPLICYQLASREDREWTLYDLSDRLLMNGWQVPTYPLPANLEQQVIQRIVVRADFGMNMAHDFMDDLTKAVHDLNQAHIVYHHDAAPKKYGFTH
>NZ_CP012650.1|WP_060677448.1|1670636_1670834_-|hypothetical-protein
MELPLSQLSEKLISFEHEHHLTDNDLAFGSQLSVERIHNIKSGEATPTQEELQLLKKFMNSKAKA
>NZ_CP012650.1|WP_015379508.1|1670935_1672597_-|phosphoenolpyruvate-carboxykinase-(ATP)
MSTKNSYQLADIGRHNPIFSQIRSTVETAFYGNNMHHVDDVAAAYHRATKDPGTVITDLPIYRATDLGLPADAKMLIANTGKVVGRTAQARRILGNPGVSEADMAGRLRQALFASAHKDFITTDVLVGLDEDFIVRAHLAIPDGFANNLLSYMLNFQPITTAYQEMFDRSVAYPEGDIYIYADPTYHDPDYPDGLAIFDPQHNTAAILGMPYFGELKKSTLTLAWSIAHRHGFVACHGGLKAFHFKNKQDQVFAMFGLSGSGKSTLTHAKHGYKYDITVLHDDAFVINRKDGSSVALEPSYFDKTNDYPMTSDETKYFMTIQNVGVTLDDQGRKVLVTEDLRNGNGRTIKSRYASTNRVDKEAAPINAIFWIMKDDSLPPVIKVDDPVLAATFGATLATKRSSAENIIGNVDRNALVIEPFANPFRVYPLSEDYHDFKALFEERHLDCYLLNTGFFGDKKIPKEITLGALEAIVNDTTKWESFAGLEHMQNLKLADFPVDYANADYRNLVATRLGIRANFIDQYQHNNHDQLPHEITDILVHLQDQLKQPITK
>NZ_CP012650.1|WP_003645533.1|1672934_1673573_+|TetR/AcrR-family-transcriptional-regulator
MEIVNTAFRLFAEQGYANVQMKDIAIACDISKSLLQHYFPKKIVLLSTMLNELTLSAFIYSNEQLTMLSSYQRTMIQMSFVLRMLDENPTMEHFIQDIFESPELTTEMVLVTLDWLEAIGVEGEAAMIRYALNFALSGGMAVFFKRKILRASVGMIAENIDQAFYLLLGENTEKIDQIYLSTAKYNTDYYYQQFITYLHKHATLDLSTEIKI
>NZ_CP012650.1|WP_003643528.1|1673733_1674237_+|winged-helix-DNA-binding-protein
MNEDMEFFNRFSHMYLHGFKNLSDMFAEPATEHGITLDEFYILYDIAEAKGKIRLMDIAESHGVTRSAISRLIGRLLRKDYLYQEAEDHDRRNKVLKLTPEGARIEHEVFTELIQRNREWRQSFSLAKQYQTLNLVEEFMDKFVNEDASKQTKKTTYADTDLKRAEA
>NZ_CP012650.1|WP_011373852.1|1674795_1675716_+|IS30-like-element-ISLsa1-family-transposase
MGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELDRVKPYDPELAQQDADRKRRNCGRRSMLTAALATLITNHLRLTWSPETIAAAYNLSTASIYNWLNRGWLPFKLTDLPNRNVRQHRVSENRGKFTSGTSIEQRPTTVNQRLAFGHWEVDTVLSSRSESRSCLVTFVERKTRLLWAIKAPNRTAKALNTAFGKFMGAFGPQVKSITVDHGKEFANYQALEQDYQIKVYFCHPYSPWERGSNEYFNRRLRWFFPKKTNFSQVTTDEILAALELINQRPLKIHHQQTAIERFRACSD
>NZ_CP012650.1|WP_003645580.1|1675762_1676515_-|aquaporin-family-protein
MTGSWEARYAAEFFGTLILVLLGNGAVANAFLKNTTGNDDPGLANGGWLLVASGYGLGVMLPAMMFGSISGNHLNPAITIGQAVIGIFPWAHVAPYLIWQFLGAIAGQCLILALYWPHYRQTTDNEAVLGTFATSDHANSQLNGFVTEMVGTAVLIFGAMGLYRGMFFHQNIDIANIGVGLLIAAMVISLGGPTGPALNPARDLGPRLVHALLPVPNKGSSHWEYSWVPVVAPIVGAVIGIWIYKIFFGL
>NZ_CP012650.1|WP_015379518.1|1676899_1677220_+|thioredoxin-family-protein
MIKEIHDQDFAKETDTGIAVIDFRADWCPPCRMMDPILKSLSEDPAYKDQVNFVSLNIDHDQATASQFQVQGIPTFLIKKDGQVVSHMVGARPKPDFEAELKKVLA
>NZ_CP012650.1|WP_003643024.1|1677243_1677513_+|metal-sensitive-transcriptional-regulator
MATTEEYVTSKQIKTRLKRSAGQLDGVLRMMDENRPCEDVLVQLSAVKSSIDKAMKLVIARNINNCVDAMTTADVQNLEHSLDLLLKTK
>NZ_CP012650.1|WP_060677449.1|1677612_1677816_-|hypothetical-protein
MEISDIVMWTFVFIIATGFVTVVSTAVLLKRAKRAPKDAEQSHSDDDDDWKKDDWNHDDWKKGDWKD

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Crispr_ID: NZ_CP012650_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012650_2

2180238-2180735

Orphan

Consensus_repeat	Method
AAGTCNNANAAGAAGAAN	CRT

13 spacers

The CRISPR arrays of NZ_CP012650_2

>merge|NZ_CP012650|2|2180238-2180735|CRT
AAGGCGCATAAGAAGAAGGCCGCTAAGAAACATAAGAAGTCGCACAAGAAGTCACACAAGAAGAAAGCGGCCAAGAAACATAAGAAGTCGCACAAGAAGAAAGCGGCCAAGAAACATAAGAAGCCGCACAAGAAGAAGTCTTCTAAGAAGCATGGCAAGTCGCACAAGAAAAAATCTTCGAAGAAGCACGGCAAGTCCAATAAGAAGAAGTCTTCGAAGAAGCACGGCAAGTCCAATAAGAAAAAGTCTTCCAAGAAACACGGCAAGTCGCACAAGAAGAAGTCTTCTAAGAAGCACGGCAAGTCCAATAAGAAAAAGTCTTCCAAGAAACATGGCAAGTCCAGTAAGAAGAAGTCTTCCAAGAAACATGGCAAGTCGCACAAGAAGAAATCTTCCAAGAAGCACGGCAAGTCCAATAAGAAGAAATCTTCCAAGAAGCATGGTAAATCCAGTAAGAAGAAATCATCTAAGAAGCACGGCAAGTCTAACAAGAAAAAA

>NZ_CP012650|2|1|2180238-2180735|CRT
AAGGCGCATAAGAAGAAG	GCCGCTAAGAAACATAAG
AAGTCGCACAAGAAGTCA	CACAAGAAGAAAGCGGCCAAGAAACATAAG
AAGTCGCACAAGAAGAAA	GCGGCCAAGAAACATAAG
AAGCCGCACAAGAAGAAG	TCTTCTAAGAAGCATGGC
AAGTCGCACAAGAAAAAA	TCTTCGAAGAAGCACGGC
AAGTCCAATAAGAAGAAG	TCTTCGAAGAAGCACGGC
AAGTCCAATAAGAAAAAG	TCTTCCAAGAAACACGGC
AAGTCGCACAAGAAGAAG	TCTTCTAAGAAGCACGGC
AAGTCCAATAAGAAAAAG	TCTTCCAAGAAACATGGC
AAGTCCAGTAAGAAGAAG	TCTTCCAAGAAACATGGC
AAGTCGCACAAGAAGAAA	TCTTCCAAGAAGCACGGC
AAGTCCAATAAGAAGAAA	TCTTCCAAGAAGCATGGT
AAATCCAGTAAGAAGAAA	TCATCTAAGAAGCACGGC
AAGTCTAACAAGAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012650.1\|WP_060677612.1\|2168404_2169736_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NZ_CP012650.1\|WP_053339301.1\|2181815_2182331_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_060677615.1\|2176246_2179942_+\|MucBP-domain-containing-protein	unknown	unknown	gnl\|CDD\|377660
NZ_CP012650.1\|WP_046038105.1\|2163344_2164256_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|180448
NZ_CP012650.1\|WP_060677622.1\|2189374_2190247_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP012650.1\|WP_060677616.1\|2182448_2182727_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_162490434.1\|2182865_2183102_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_060677613.1\|2171733_2173563_+\|type-1-glycerol-3-phosphate-oxidase	unknown	unknown	gnl\|CDD\|380303
NZ_CP012650.1\|WP_015379760.1\|2186734_2187352_-\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NZ_CP012650.1\|WP_060677620.1\|2185764_2186028_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_003641945.1\|2173577_2174300_+\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
NZ_CP012650.1\|WP_060677614.1\|2174532_2175708_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP012650.1\|WP_060677618.1\|2183394_2183661_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_003641941.1\|2167355_2168327_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP012650.1\|WP_060677621.1\|2188512_2189304_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP012650.1\|WP_060677611.1\|2165828_2167355_+\|ABC-transporter-permease/substrate-binding-protein	unknown	unknown	gnl\|CDD\|270328
NZ_CP012650.1\|WP_060677610.1\|2165144_2165591_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178927
NZ_CP012650.1\|WP_011100991.1\|2186129_2186408_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_003643773.1\|2170201_2171719_+\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP012650.1\|WP_139246946.1\|2183869_2184082_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP012650.1\|WP_060677612.1\|2168404_2169736_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	3.88685e-123
NZ_CP012650.1\|WP_060677615.1\|2176246_2179942_+\|MucBP-domain-containing-protein	gnl\|CDD\|377660	pfam06458, MucBP, MucBP domain. The MucBP (MUCin-Binding Protein) domain is found in a wide variety of bacterial proteins, in several repeats. The domain is found in bacterial peptidoglycan bound proteins and is often found in conjunction with pfam00746 and pfam00560.	6.90488e-10
NZ_CP012650.1\|WP_046038105.1\|2163344_2164256_+\|oxidoreductase	gnl\|CDD\|180448	PRK06182, PRK06182, short chain dehydrogenase; Validated.	9.33165e-163
NZ_CP012650.1\|WP_060677622.1\|2189374_2190247_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.25726e-23
NZ_CP012650.1\|WP_060677613.1\|2171733_2173563_+\|type-1-glycerol-3-phosphate-oxidase	gnl\|CDD\|380303	NF033461, glycerol3P_ox_1, type 1 glycerol-3-phosphate oxidase. Glycerol-3-phosphate oxidase, also called alpha-glycerophosphate oxidase (GlpO), is an FAD-dependent enzyme related to the glycerol-3-phosphate dehydrogenase GlpD. Notably, GlpO releases hydrogen peroxide, which can contribute to virulence.	0
NZ_CP012650.1\|WP_015379760.1\|2186734_2187352_-\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	1.46009e-87
NZ_CP012650.1\|WP_003641945.1\|2173577_2174300_+\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	7.59237e-82
NZ_CP012650.1\|WP_060677614.1\|2174532_2175708_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	8.12862e-109
NZ_CP012650.1\|WP_003641941.1\|2167355_2168327_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	1.46616e-132
NZ_CP012650.1\|WP_060677621.1\|2188512_2189304_-\|HAD-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	3.60417e-59
NZ_CP012650.1\|WP_060677611.1\|2165828_2167355_+\|ABC-transporter-permease/substrate-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.22718e-155
NZ_CP012650.1\|WP_060677610.1\|2165144_2165591_-\|hypothetical-protein	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	0.000123339
NZ_CP012650.1\|WP_003643773.1\|2170201_2171719_+\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0

>NZ_CP012650.1|WP_060677615.1|2176246_2179942_+|MucBP-domain-containing-protein
MYTENTGKHHRNGLPVWLLPLLVVISFWGVSQNIMVVDASSSVTVLPGNGGTLPLVNQLVIKQNDTALQGITNNAGDRGSLTPKNGAQRVLIHKVKDSDTITSTYGTVGTFHGQEVTAKVTISHIKVHDDSHKAPSGMKQTDGAFQIGPGFSSDTTMSNVAQFNVSYEFYYADTHAAVNIQNAFITLSSLDGPVAGTSTGFEYTAYLGAGKIYTVENSIVKQIANPLGGGQLVMAGQTARDASWPYTSSTAATFGVSGTKLEFIYGTTRVNSGNSWLQPVYNVSTITLGTPAIATPTLSATQSATDKQNRTLTYDLQQKVNVLDQDLMTKYKDWSENITIPTNAKYAKGEVINDAGQALPSTAYQVSYDEKTHQVKWHLTDSGIKSLPFKGETYHFKAQVQFSDDVDDQTKVTATGQTAIDKQTKTSNTVTNTIDNQATITVHHYMTDSTDKVAPDETVKVGYGKAYDVTKQVKTITGYKRNATLDEHTRGTASKTTKEAVMYYDPLPYNIHVNYLLTDGQKLDELDVTGLYGDTYTTEATDFEDLYTVDTDRLPTNAQGTVTEKPTTVNYYYQPTTGQWVDVGNQSSVLVRQDTKHNVRSVSQIYANDSGFTVKYNQDAAQVAIAASDTNGTQDNSLVFDYNSKYTFELSKNETVTFKVDDQGQVTATRVLGAEQTVTTFDKSGQLKTVTTVTNANGTKSQQTNTVDGLKSMVTGEQYDLGLLNGLKVTAQKEINPSQAATTESKTTTDTSQSGSNQSTSTTATDQTETNESTAGSSTNATNASSSVDASSANSQGDTEATSQSGTSASADSKTDSSVASSTSQTTDGKTDGETTNTGDTTTGTTTDSGLGFKSPFTEDQNTSSALGSAQTSSSLNSDTSAAVQALIAEPNSTPVVLGEDASFEEGVPVNDPVFSNDEGVSPNNNPSSAATPLAQATNTRARLTQNGKLLYEGTLQADQGEQNLYVSPDTTVEVDGGADGDGFYLDTYDGDKGMAYTLGSGYAWAAENNDVTAAPASSATTSSESAASESSTNSSDSSRTASSAADHSTSSASISDASQSSHSTSSSENSRSESSSSSSTTGDSADADKQAAARSSQTQSNSVNGSSQVVGSSTVTSQSSVPTKANTKQASSTPTTKANRATVVAATSSTAPRQSRATTASASVPSVTSASAAAASRAKQRSAFKKQHPILNQILPKTNSAVATWLVWLGVGLLILTVAITMVIKKRGRD
>NZ_CP012650.1|WP_060677614.1|2174532_2175708_-|IS256-family-transposase
MNELTTEIIAALAPKQDLDEVFRHHLEIAINQLLQTELAEFLGYERYSYAGINTGNNRNGSYERSFDTKYGQLNLTIPRDRNGRFENHTLPAYGRHSDNLETTVIQLYTKGITTAEIAELIEKMYGAHYSKATVSNMTKAVNEQVQAFQQRRLASQYAAIFLDATYLPLKRDTVQKEAVHIAIGIRPDGTKEVLNYQVAPTESTGIWTELLGTLIKQGVKDVLLFVADGLVGLDEGLNRHFPKAKRQRCLVHVGRNLMNKVRVKDRKAVISDFKQVHRAANREAAELKLNEFANNWHQTYPKLIKDLLKMPNLLTFMDFPPAIRQSLYATNLIENFNKHLKRTTHHKEQFPTEDSLDRFLVSQFNVYNEKSLKRIHRGFKGLQDTLEASFI
>NZ_CP012650.1|WP_003641945.1|2173577_2174300_+|aquaporin-family-protein
MMKDPLALQLLGEFLGTFILILLGDGVVAGVTLNKSKAQNAGWVAITLGWGFAVTMGVYASSFMSPAHLNPAVSLGMAVAGKFPWAYVIPYSAAQIAGGVIGGLVVWLHYYPHWQATKDAGAILGIFATGPGIRRYFWNFISEVIGTFVLVFGLLAFTKGQFTAGLNPIVVGILIIAIGLSLGGTTGYAINPARDLGPRIAHAVLPIANKGTSDWAYSWVPIAGPLVGGALGALLFNVLP
>NZ_CP012650.1|WP_060677613.1|2171733_2173563_+|type-1-glycerol-3-phosphate-oxidase
MAFSATTRQQNIERLQNETLDLLVIGGGITGAGVAIQSTAMNMKTGLIDMQDFAEGTSSRSTKLVHGGIRYLKTFDVGVVADTVKERAVVQGIAPHIPKPDPMLLPIYDETGATFDLFSVKVAMDLYDKLAEVKDPKFTNYTLSREEVLQREPQLNPKHLVGGGVYLDFRNNDARLVIENIKKAHENGGIMASHVKATGLLHDDDGRINGITAEDLLTGASFEIHARIVINTTGPWSDTIRKMDHTEKYQSQMRPTKGVHLVVDAEKLPVPQPTYFDSGDQDGRMIFVVPRENKTYFGTTDTDYHGDLKHPTVTQEDVDYLLEIVNRRFPTAKITLDDIEASWAGLRPLIAANGSSDYNGGNSGKISDKSFKEVIKVVDQFESQEASREDVESVLNDLETSLAEDKLSPSAVSRGSSLTSSPDGLLTLAGGKITDYRKMAAGAMALIAKILADKYDAHFNEINSKNLPVSGGDIDPHNVDATIAFYAKQGTDNGLTNDEALRIANMYGSNAARVFSLIGKVEPTHGLSLAETISLRYALDEEMTLTPVDYLLRRTNHLLFMRDTLDGLKDGVIATMADYLGWDTATVKAQTELLNQTIAESDLTALKQG
>NZ_CP012650.1|WP_003643773.1|2170201_2171719_+|glycerol-kinase-GlpK
MTDKYIMAIDEGTTSTRAIIFDHAGHKVADSQREFPQYFPQPGWVEHNANEIWNAVLSTIANAFIESGIKPAQISGIGITNQRETTIVWDKQTGLPIYNAIVWQSRQTAPIAEKLVKDGYGDLIHQHTGLVTDAYFSATKIRWILDHVKGAQERAEKGELLFGTIDTWLLWKLTGGATHVTDYSNASRTMLFNIHDLKWDDQILQLLNIPAAMLPEVRTNSEVYGKTKDYHFFGSEVPISGMAGDQQAALFGQLAFEPGTVKNTYGTGAFIVMNTGEKPQLSDNNLLTTIGYGINGKVYYALEGSIFVAGSAIQWLRDGIRLVESAPDSERAARESHNENEVYVVPAFTGLGAPYWDSEARGSVFGLTRGTTREDFIKATLQALAYQTRDVVETMKKDSGIEIPVLKVDGGAARNDWLMQFQADILDTQIMRAANLETTALGAAFLAGLSVGYWQDLEELKASYKPGTSFDPEMGPAERTNLYEGWQAAVKATQVFKHTPYHAGK
>NZ_CP012650.1|WP_060677612.1|2168404_2169736_+|NAD(P)/FAD-dependent-oxidoreductase
MAEQYDVVVIGGGPAGNAMASGLKAQGKTVLIVEADLWGGTCPNRGCDPKKILLSAVEARQAAQHLQGQGLIGAPKIDWPALMAHKRGYTDGINDGTLNGLKGQDIATLHGQAHFQSDNQLAVGDRVVSATDYVIATGQRPAILPITGHEYFKTSTDFLDLDQMPKRVTFVGGGYVGFELATIANAAGADVHVIHHNDRPLKAFDADLVKDLMAAMTADGITFDLNTDVQAITKTATGLQLTADNFELTTDLVISSAGRIPNADQLGLANVGVTFDRHGIQVNDHLQTANPHIYAIGDVSDTPVPKLTPVAGFEARYLVGELTHPGAAIKYPVVPTQVFAAPKLAQVGISAAAATEHPDEYRVNTLDMTKWFTYYRFGAQQAQAKVVVAKASGQVVGATLLSDVADEMVNYFTLLIEKHVTLPDLQRLVLAYPTPASDLQYLY
>NZ_CP012650.1|WP_003641941.1|2167355_2168327_+|ABC-transporter-ATP-binding-protein
MTTAIEFQHVQKDFNGQTVIPDLNLTIDQGELFVLVGTSGSGKTTSLKMINCLEPLTAGKILVNGTDTTTIPVRSLRWQMGYVLQQIALFPTMTVAQNIAVIPEMKGTAKKEINQTIDELLAEVGLDPKEYRDRMPSELSGGEQQRIGILRAIAAQPDIVLMDEPFSALDPISRQQLQDLVLRLHARYHNTIVFVTHDMNEALKLGDRIGVMQHGQLIQVDTPAALAQHPVNDFVRNFFGASRAKNVYDVYVGRVGLIQGYLTEEPSVASGRIQSLDVQATLRTAFTALTDHDYVAVTEENRVVGYLDRQRIVAYLSQHEEVS
>NZ_CP012650.1|WP_060677611.1|2165828_2167355_+|ABC-transporter-permease/substrate-binding-protein
MQTLIQTFIDRRGDLLTALWQHLGISLASLVIAMVIAIPLAIWVVRRPRWAEGLLQLTSVLQTIPSLALLGLLIPLVGIGTVPAVIALVIYALLPIFQNTYLGISEIDASIEEAADAFGMSRMRKLFKVELPIVLPQIIAGIRTALVLIIGTATLAALIGAGGLGTFIMLGIDRNDTSLLLIGAISSALLAILLSALVRWFQTAKPRHALIVFVGILALLGGGGAYSVYANRVETITIAGKLGSEPEILINMYKQLIEAEDEHVHVTLKPNFGKTTFLFSALKNNQVDIYPEFTGSVLETLVKGNNPAGQTANQTYQLAKQRLAKQEQMTYLKPMQYNNTYALAVTKKFQQEHHLKTISDLTQVESILKPGMTLEFIDRNDGLKGIKKTYGLDVTAKSMEPALRYEAISKGKINLVDAYATDSELRQYHLALLKDNKHFFPTYQGAPLMKTSFANKHPKVVKALNKLAGKISETDMQEMNYEVNVKKQSASTVAHRYLVKHGLLKEGR
>NZ_CP012650.1|WP_060677610.1|2165144_2165591_-|hypothetical-protein
MATIHLYLASTNHQSTNITATTPAAWVVILRYADHQKALNDGGYGHTETSLALSALTTALATLKRHDLPVHIHTTTEQVAAVISEQRYLSWRQNNWDVPEADQPDLPQWQTLIPISEEFPNLTITYHPVDDPVMTTATTTLTAVMTKL
>NZ_CP012650.1|WP_046038105.1|2163344_2164256_+|oxidoreductase
MSQPRVILITGASSGIGKATALKLQAQGNIVYGAARRIEKMTDLAAAGVHVLKVDVTDEATLIAAVKTIQVEQGRIDVLINNAGYGSYGSLEDVPVAEGEYQFKVNVFGVMRLTQLVLPLMRAQHRGRIINVSSIGGKIYQPLSAWYMGTKHAIEGMSDSLRMEVAPFGIDVVIVEPGGIKTEWAGIAEKKLLAVSGETAYHEQAVKVGAMLSLFDQFASNPGVIAKLMVRAVNDVKPKTRYHAGMGAGVSLTARQWLSDRQFDRMMNSAVNGAAKLSKVARRKDRRTGSRHYRHGKIPADNN
>NZ_CP012650.1|WP_053339301.1|2181815_2182331_+|hypothetical-protein
MKVEKLENNVSKEEMEIDYYVPVSISFPENDLEEEGLYYYRFINKEYSFIEFKINSVSKKIVNVTVTSINDIQNGDFIFNGSISKANPIIDIYEFEYEAVITNNNSFEFYMGEKKIFFILDNEEISSMIMISNHFFALLNSENDIVGAQIANFNDEDWNALVGNLKEAGKI
>NZ_CP012650.1|WP_060677616.1|2182448_2182727_+|hypothetical-protein
MLVFIVIGLITAVITIGLGYWSYILGKRNKSNLVGSVIPVGYFIVRLVFVLVLGEGVRELITSLVGNLVITVIYVLLFVWGRQRFNRQKQTK
>NZ_CP012650.1|WP_162490434.1|2182865_2183102_-|hypothetical-protein
MTFLALWAFSAAFSAVFLAGFRLANFSAAHFVASLVARAARLIRPPFFAAFVNLATFKTGQSSGLSKPLLPTANVSYR
>NZ_CP012650.1|WP_060677618.1|2183394_2183661_+|hypothetical-protein
MKHVASIRKITGKKLLTKNEYKKEAISVVKHGKYVPKLHAFIKKATKAKKKRDGYNYEFVGIDIKTAKITTLHVKTTRVLRKKGVILE
>NZ_CP012650.1|WP_139246946.1|2183869_2184082_+|hypothetical-protein
MQKGKVFAVKALSDIQYSYDLYGQINENWKLKVGEFVIDSGEENYEGFKRGDFVHFRCDRVDLIDFNKFI
>NZ_CP012650.1|WP_060677620.1|2185764_2186028_+|hypothetical-protein
MATIIIIGVVIIGITLGLGYWSYLLGKRNQSNLVGTIIPVAYFVVRAILAVMTQTTTHGLVSSLVGSLLFSLIYYGVFVWGKHRANK
>NZ_CP012650.1|WP_011100991.1|2186129_2186408_+|hypothetical-protein
MLVFIVIGLITAVITIGLGYWSYILGKRNKSNLVGSVIPVGYFIVRLVFVLVLGEGVRELITSLVGNLVITAIYVLLFVWGRQRFNRQKQTK
>NZ_CP012650.1|WP_015379760.1|2186734_2187352_-|sugar-O-acetyltransferase
MTNNNDRLHTGELYLPNDPELEKRQFGYLDQLYDFNQTRPSELTKRQILLSKMFAEIGPKCYIEPPFHSNFGGHHVHFGKGVYANFNLTLVDDTHIYVGDYTMFGPNVTIATAGHPILPSLREQAYQYNMPVHIGRNCWFGAGAIVLPGITIGDNVVVGAGSIVTKDLPDNVVAVGNPAHILRHINDHDRQYYFKDRQIDPSLLN
>NZ_CP012650.1|WP_060677621.1|2188512_2189304_-|HAD-family-hydrolase
MIKLMATDMDGSFLRDDMTYDEAQFALLYQQLQLRGVRFVIASGNQYFQLKSFFKDYPEMIYLAENGAYIRDADHVYALNAFQPDTIQTILNKIQTIPDLKLLVCGAKSAYTLTTTDPEHVAQMRHYYHHLAVVESYDQLDDDIMKFAITCPPERTTAIVTQLRELLTDVAEPTSSGHGDIDIIQPGMNKAAGLAQLGQVLGIDLADMAAFGDGGNDLEMLREVGCGVAMANAQPAVTAVANATTGTNQEQGVLQWIKNWLEA
>NZ_CP012650.1|WP_060677622.1|2189374_2190247_-|AraC-family-transcriptional-regulator
MKILHETVQTIPRLPFKYYEHDPLTDINVAPHWHQGIELNYLVSGTTLKFVTDGQTNEYRPGDLWTTNRRVVHSASGPTEVDWVEFGIIIDDDFLQTQIPVSANWQLTLNGAASSKTHPQAYADVRQQLVTIHDLLTTPTTDLLRLQILSHFYQLLVTLGQTFTVPLTATTVSPNLTLTDTVMTAINQHYAEPIDGNTLAEQFHVSLTTLNQQFNANVQLSVNRYLRLIRLMNARRLLLETDHKIEYIAMQCGFPNSKTFNRNFKSWKGMTPTDYRQAYARYHRIDTSCL

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Crispr_ID: NZ_CP012650_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012650_3

2991495-2991577

Orphan

Consensus_repeat	Method
GAAAAGGTAGCTAATAAGGACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012650_3

>merge|NZ_CP012650|3|2991495-2991577|CRISPRCasFinder
GAAAAGGTAGCTAATAAGGACTTCTCAACTTACAAGTCACAGACAGCTGGCTTGATTGCTGAAAAGGTAGCTACTAAGGACTT

>NZ_CP012650|3|1|2991495-2991577|CRISPRCasFinder
GAAAAGGTAGCTAATAAGGACTT	CTCAACTTACAAGTCACAGACAGCTGGCTTGATTGCT
GAAAAGGTAGCTACTAAGGACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012650.1\|WP_060677887.1\|2997693_2998074_+\|holin	unknown	unknown	gnl\|CDD\|377377
NZ_CP012650.1\|WP_060677874.1\|2978400_2978748_+\|phage-head-closure-protein	unknown	unknown	gnl\|CDD\|377521
NZ_CP012650.1\|WP_060677888.1\|2999573_3000587_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_060677884.1\|2995045_2996041_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_060677873.1\|2978078_2978411_+\|phage-gp6-like-head-tail-connector-protein	unknown	unknown	gnl\|CDD\|153446
NZ_CP012650.1\|WP_015825361.1\|2997418_2997682_+\|hemolysin-XhlA-family-protein	unknown	unknown	gnl\|CDD\|371241
NZ_CP012650.1\|WP_060677877.1\|2979551_2980208_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|309671
NZ_CP012650.1\|WP_060677875.1\|2978750_2979158_+\|HK97-gp10-family-phage-protein	unknown	unknown	gnl\|CDD\|273775
NZ_CP012650.1\|WP_060677878.1\|2980283_2980658_+\|phage-tail-assembly-chaperone	unknown	unknown	gnl\|CDD\|311073
NZ_CP012650.1\|WP_060677879.1\|2980919_2985629_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|381605
NZ_CP012650.1\|WP_060677876.1\|2979157_2979538_+\|DUF806-family-protein	unknown	unknown	gnl\|CDD\|368546
NZ_CP012650.1\|WP_060677885.1\|2996037_2996250_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_060677880.1\|2985705_2987475_+\|phage-tail-family-protein	unknown	unknown	gnl\|CDD\|368574
NZ_CP012650.1\|WP_015640500.1\|2980702_2980888_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_187329199.1\|2994900_2995062_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_060677881.1\|2987540_2989898_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377677
NZ_CP012650.1\|WP_011101374.1\|2998983_2999409_-\|lipoprotein	unknown	unknown	unknown
NZ_CP012650.1\|WP_060677889.1\|3000692_3001214_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP012650.1\|WP_060677883.1\|2994643_2994886_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012650.1\|WP_060677886.1\|2996261_2997419_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|119377

Protein	Function_ID	Function_description	E-value
NZ_CP012650.1\|WP_060677887.1\|2997693_2998074_+\|holin	gnl\|CDD\|377377	pfam04531, Phage_holin_1, Bacteriophage holin. This family of holins is found in several staphylococcal and streptococcal bacteriophages. Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the buildup of a holin oligomer which causes the lysis.	9.29638e-08
NZ_CP012650.1\|WP_060677874.1\|2978400_2978748_+\|phage-head-closure-protein	gnl\|CDD\|377521	pfam05521, Phage_H_T_join, Phage head-tail joining protein.	3.78626e-11
NZ_CP012650.1\|WP_060677873.1\|2978078_2978411_+\|phage-gp6-like-head-tail-connector-protein	gnl\|CDD\|153446	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins. The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.	4.44287e-22
NZ_CP012650.1\|WP_015825361.1\|2997418_2997682_+\|hemolysin-XhlA-family-protein	gnl\|CDD\|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	1.93788e-09
NZ_CP012650.1\|WP_060677877.1\|2979551_2980208_+\|phage-tail-protein	gnl\|CDD\|309671	pfam04630, Phage_TTP_1, Phage tail tube protein. This is a family of phage tail tube proteins from Myoviridae.	1.222e-78
NZ_CP012650.1\|WP_060677875.1\|2978750_2979158_+\|HK97-gp10-family-phage-protein	gnl\|CDD\|273775	TIGR01725, hypothetical_protein, phage protein, HK97 gp10 family. This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion. [Mobile and extrachromosomal element functions, Prophage functions].	3.47686e-07
NZ_CP012650.1\|WP_060677878.1\|2980283_2980658_+\|phage-tail-assembly-chaperone	gnl\|CDD\|311073	pfam06896, Phage_TAC_3, Phage tail assembly chaperone proteins, TAC. This is a family of phage tail tube assembly chaperone proteins from some Siphoviridae viruses.	1.13913e-34
NZ_CP012650.1\|WP_060677879.1\|2980919_2985629_+\|C40-family-peptidase	gnl\|CDD\|381605	cd13402, LT_TF-like, lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	1.42891e-44
NZ_CP012650.1\|WP_060677876.1\|2979157_2979538_+\|DUF806-family-protein	gnl\|CDD\|368546	pfam05657, DUF806, Protein of unknown function (DUF806). This family consists of several Siphovirus and Lactococcus proteins of unknown function. The viral sequences are thought to be tail component proteins.	7.98162e-52
NZ_CP012650.1\|WP_060677880.1\|2985705_2987475_+\|phage-tail-family-protein	gnl\|CDD\|368574	pfam05709, Sipho_tail, Phage tail protein. This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function.	3.29173e-05
NZ_CP012650.1\|WP_060677886.1\|2996261_2997419_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|119377	cd06415, GH25_Cpl1-like, Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase activity. The Cpl-7 lysin is also included here as is LysB of Lactococcus phage, and the Mur lysin of Lactobacillus phage.	4.54726e-60
NZ_CP012650.1\|WP_060677881.1\|2987540_2989898_+\|phage-tail-protein	gnl\|CDD\|377677	pfam06605, Prophage_tail, Prophage endopeptidase tail. This family is of prophage tail proteins that are probably acting as endopeptidases.	3.234e-11
NZ_CP012650.1\|WP_060677889.1\|3000692_3001214_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.02565e-14

>NZ_CP012650.1|WP_060677881.1|2987540_2989898_+|phage-tail-protein
MALNNQYLILDPNLKRIGTLTVDGATKFSNDSVKIQLADSDTTSTSYDDDANIGTQDNFNGTINLNAQSKKFDHQGSLDVLQGQPDSDKVVAGNNLAYYDELSGHWYVMYIYSNDDASSAAVKHTTTINFTNLCLYTLAHHYPLAITASASSIQTAFNQCFNATGWTLDYQTTNVMTPTIAIDGKTKASTLVQTLIQTYNVEIDPYVEIDSQGNITKKVCVITDQLNADVVYNEAVFGKNMTSLKRTTVSNPITKLIAYGDNGNTMSTVNDGKPYVVDDEANRKYNPDWQSGLYYEGVITANSIEDPSGIKAWAEEMLQLYNHPRTYYEVAVTPKFNPPLGATIRFKDELIKPALDASGRVIQRTISKANPYGNTVGFGEYVTVPVATPAWMQGYQSAINSAIEKAKEDASSVKPVALTPDGNNFTDTTQTKRLILQAWEGNTNISAYIDNKGFIWHRYNTDGTLDTSFNQTGYLVQAAHNSVGTLHGTIETNYIQEEPEIKLQTSAIRNLGSFIQDDSTLGITDTAQYMCPLSNGQYITSRAINQSTTTDVMFVLHDNNFKPISKMIVSHGGHGSSFSIEEVDGAVYIWSITKPNLSVNEYAVSRIPYLANVTLSNDDNRITRFCTVNRYIRVSVDFKHGYVLCGYVNGKHDVLRLDDVKQGNYNVLYSFDITNYGYDKDRQTYQTQGIDFPYVYFHSGNYNMKDPRMVYAVNVVHGGQEFASNYLLDMNLGLTDDVIEPETCNIIYSQTNQPELLVTFNCGSIARVFVIPIKERLPMIKKGGV
>NZ_CP012650.1|WP_060677880.1|2985705_2987475_+|phage-tail-family-protein
MTLQRDDFEYAGMNSREDLQVEMGNVVLPSAPAMAEQVTDIPAMYGNQFNGTDFTSRTINIPVSIYCADNQDRFNQTMHNLSGLLLSDDPSDNGKEYPLVFGFEPKVTYWGHITAISEPAPINPGMYDMTLTITFVQSDPRATLPQVETPLKNGLNTITVGGTARTEPVIQVIPKRDLKYIGFSLNGGQFGLGPESPEDQATAVQPYTKAVDDPLGTMAMWTNDTNALSNMKTGEAYTYQGHSEIKTETSVMRPTVNNDGYDFGTIPTTGEDRWYGPAYRYTGMTQSLTDWRVRTGIHQFKYSGTHNGRAMGRVEVLLLDPSGNTIGRFGMRDMAYGAKPMARLQICEPGSTLEYGDRYTDLYYGSGPSGSFTNKPDQKIQIKTGTTTKTVTRYSRSRRGKVTKNTIKETVDTYTTVVNKEEDSALAGAWLVLDITKRGQVFTWSITQYSTKTGRPFLDPHIHMLVHGTYVDTQNKYQTALGGIGSVFLKHPIAEDIHKVAYRNPFMSMTDLQIWKVNKVDATKPTYIAGAGEEIVMDCESDTVTVNGKLVSPVWSTDFPKLKPGVNGLSMIGDLDDAQITLKYLPRLL
>NZ_CP012650.1|WP_060677879.1|2980919_2985629_+|C40-family-peptidase
MAKKIVGREMTSKVGLDSAEAVKSLKQLTAEVKANTSGWKAQEVALNSAGKYQEAAAARVDGLAKSMEMQKAKIDELKKRQSGLNRDTKDGVLEYTKMTDEINKANRSYDSMGGQLDRAKNRLEYYNSGLADLQRGYKQSTALSKSYVERLEAEGKQEDANKARLNGLKQAYSNIQAQYKTQSDELEKIKKASGDTSDAYKLQQTRVNQTATAMAKLESKTNELDSAMNKAKPTAFTRMLDSAKSKLGLVRDEEKKTSDETKHFAIGFAIGNTISNAASSAVGYIKGVTQQGYELAEAGATIKKQWTNLGLSDSEATKMTAQIGDIRSKANMSGGAIDAMQKKFYAMTNSTTKARAMTEVLTSYGSAAGKSGDQIAGLTQGVAKLAGSSKVTASLFKRNFSQVPELQKAIIKASGMSTTAFNKQLAAGKITGSQLQGYMVKAAKTSGKAWSEFGDTTKGKMAAIQGTYTNLKVAFAKPLVAGVEKAIDGVSKKKGALDNIKKSLSDLVGTLGKKTGQYIGDVISFLAKNERPIEKTGGAIASIVGSLAKGAWSAVAGALKLIGGHSKDASKGMNGVADATAAIAKHKTVIEDIGKAIMVYLAVSKLKAIGSTLYGVAGAAGKVGGALSRIVFKPKIKGETGKRELTLFSKAVKGTAKGIGKGLSWTAKVAWKGASKAVGLLWKATKGTSKLIGKGLSWTAKIAYKGASKAFSVLGAGIKTLGKSFLSLGRLLLANPIGLVLTAVVALGVAFYEAYKHIKPFREWVNKTFKSVVNFGKGLLRWGSNAVKTVAHTVDNIRKKFDKFKSGFKNSWNKHWSNVGKSLKGAWDGSLKHTREFFSSVGKKWDGWKSSFKKSWTKHWNNAKSGLHDAWNGSLKHTRDFFSGMGTKWTGWKKSWSHSWNNHWDTMRSNLHSYWNKDLSHTKVFGHSMGDWLGAFKKTFKGGWSSLGTGVENIFKGLWKDLKGFAKDGMNDVIDIINDGINAVNSVIHTFGSKNKETIHPLGHVKFATGTGRNPITKPTMAMLNDGNDSPQTGNKEMVMLPNGDSGIVQGRNTKMMLPAGTEVLSASETAMLMSMQGVTKYAKGTGFFGDILSSVTSGISGVTSWVGKKVDSLEKFFNTATNIIAHPIKSLENLFSWSSKGISGVMSNIGHGLFNGVEKQAKTWWSTLWGGVSDSLDSGASSSSLVNAMEKYGATNKYVYGAEGPSAFDCSGLVEYTLKKLGISFPRTSGEQYRASKHVSNPKPGDLVFFGPGGSDHVGVYTGNGEFYSAENEHSGMGISKVHGGGYGTFAGYGRVPGLSDSTSSDKSSKSSGLLGTIKKQVGSGFWKFISKLADMFGDGGSSNPGGSGVQRWKPDVIKALKKNGFEASASQVSAWMKVIARESNGDPSVVNNWDANAKMGIPSKGLVQTIQPTFDAYKFPGHNNPLNGYDDLLAGIHYMKAKYGSGPSAFARVSGPEGYENGGIINTNQLIEVAEHNKPEMVLPLTNKSRANQLIAQAIQLVNGNNSNQIATQSSESNEKLDKVISLLAALLAGQGNVQAVISNDSIVNANKNYTKKTSQYSQMMGY
>NZ_CP012650.1|WP_015640500.1|2980702_2980888_+|hypothetical-protein
MKNQQEDFNLLAQQLLTEGLSPKEFDDSSFFNMMASLNARKKEDRAELVDPLEAINQTYGL
>NZ_CP012650.1|WP_060677878.1|2980283_2980658_+|phage-tail-assembly-chaperone
MKINAKNYFKINKTANVTPTNNIIRLATKVQIGMLESQDAEKEVTELDAMKNGLELQDEMADFVQRVMGYTDQQMETINNTISIERFGEGVGYLIMRLNGISDADIKLSEQKQRKAIEDAKSSK
>NZ_CP012650.1|WP_060677877.1|2979551_2980208_+|phage-tail-protein
MSKHNIVKATFALLDSKGDLIKDPDKGLSTDGIYVADHQGEGFSQINVSTLEAAGTPGWGNGQVKRTAYGKSMPTLALTALDLDFKINQMLKGFTQSANTGAWVRQLPKPHVAMIAESQSLDGDISIYECFNNVEFVEEGSNNSTDTNNEAAYSTALHGTVLTPLKPTIFLAANKVQQPYMIAKSTDKGFDLAKLYAETFGGYVLSPSSVVPSVGLGH
>NZ_CP012650.1|WP_060677876.1|2979157_2979538_+|DUF806-family-protein
MLLPVSQVASLVDSLNLTWLDKVYLNAIPKEDLKNTTSTVMLLQETDSSPAYLANNTFKGLAMGVEIQIFYKVNLADDFNPLEAEIAFMKSLKAAGWLIVSSQHRTTDPDTDQVTKTIYIAKNEII
>NZ_CP012650.1|WP_060677875.1|2978750_2979158_+|HK97-gp10-family-phage-protein
MANDDMADQLASWLKDVHKLVPNEAEQERITKAGAKKLADNLTEVTRKKHYSSHKDKKYGHMADNISYNSNDIDGEHDGSSIVGWTNKFHDMKAMWLNDGTKHIKADHFVDENLADSQDDVFNAMLDEYKKGDDD
>NZ_CP012650.1|WP_060677874.1|2978400_2978748_+|phage-head-closure-protein
MAINRLTPVDFNQRIQIGTVKTVQNPINGTSKQTFVSQFSLYCAPYTRSIASSYQLTAEQLEQVVVIIRHNPKVYEGIKCQYKGKLYDVINDSIDDSSNYLSCDYLTLKQVTKGG
>NZ_CP012650.1|WP_060677873.1|2978078_2978411_+|phage-gp6-like-head-tail-connector-protein
MAADLETLKSSLRIDGDDDDKLLKGYLSAATSYIKQAIGDENSVPGFYEMEDVNDLFETAVYALAGSYWYYRTSITSNTVNPVDLVVDSIIGQLRGLYSQKQGEVDNNGD
>NZ_CP012650.1|WP_060677883.1|2994643_2994886_+|hypothetical-protein
MENINITTVSVQPDNVYKINFSATYESASHIEGFVLMKTEDYRSKTGDQQVAFIKQTINDNLSGKITPVSELVTNDNTKL
>NZ_CP012650.1|WP_187329199.1|2994900_2995062_+|hypothetical-protein
MNIDAQALINKLTSNYAQAIAIKDQQLAMAQVQIDQLNAKLAEKEAPKDGENA
>NZ_CP012650.1|WP_060677884.1|2995045_2996041_+|hypothetical-protein
MAKTLSFTDTSPQTVKIGDTTTSFTLVCGNDNVATDLTKATSITVKLGHASGYLKSATVDPASLTDPTTGQVTVKFTADLMTSLPAGSYAIEVWVVDSTGTSIYPSDGSTGFTITNNIQSTNGATITTIAFDDFVKAMNKAASTIAKGDKGEKGDTGTVDNDGLTKAPAFVDLKTQVDNSAVGTNLLLKTHEPFSITGTNIVNQAQQMYASSRELEVGTTVTLSFDAISTASTNIIIQNSGGVWMSLISTPVGTTNKHYVATINLDNFFVQEGVRMRLDNVPSTTTITVSNMKLELGSHATDWCPNPSEILTQSDYAKIKAAILSLGGHLS
>NZ_CP012650.1|WP_060677885.1|2996037_2996250_+|hypothetical-protein
MSFDLSKFLTEGLIDSINNGLIPSDLATVYAGNYLVKSLITQTQITQVSDAITAYKAAQVSSTVDHSSVK
>NZ_CP012650.1|WP_060677886.1|2996261_2997419_+|LysM-peptidoglycan-binding-domain-containing-protein
MNKHNLKALVLMVGAIFMAFLMVDVTSQASTSRDQGVDWSKYNGNNGTFGYNTDKFVFSQAGGFYGGTNIPQTTYASQVKSAQQAGKRVHTYLWDGVGGNMTNAKAMMAYYLPRVRTPKGSIVALDYEDGASNSVTANTNVIKAQFKLIKAYGYTPMLYSGKAYLNAHVNTSAIVKAYGSCLWLAEYPDYLVRTKPDYNWFPSMDGVAIFQFTSTYKAGGLDGNVDLTGITKSGYTTASKKQAKANVKQAQEAKVVKYSQRGVFYPNRTLAVRYTDSDKVSQVATYYKGESVTYNAVIIEHDYVWARYTRSNGLYGFIKLGVTNGPAYGKRVAGQPVSHTYYTVKSGDSWWSIAQRNGLNMTSLASQNGKTIYTTIYPGQRLVVL
>NZ_CP012650.1|WP_015825361.1|2997418_2997682_+|hemolysin-XhlA-family-protein
MAQYDDTTKLLMDIQKDVAATKTKVENIEEKLNQVDDIGDKADKALAKSIEASHQIDRVTAIQNWLIGVLVSGVLVTLVIYIAEKFL
>NZ_CP012650.1|WP_060677887.1|2997693_2998074_+|holin
MIKKISFKNADGSLNGKLIAGIISLLIVLIQQVFAMFGVKFTGDWSAIVAVVNTVLTILGMLGVITDVQTVTVPTVESDEESQVEATANKVADEAQTPTSTVAVVNSSASSDTETASESASQAGEK
>NZ_CP012650.1|WP_011101374.1|2998983_2999409_-|lipoprotein
MTRAILISFCALFLLAGCTSQAEPSISTKQANSVAAANRAEQTSRANAAADASAKKQSGDHYQATDDHITSATSAVAAVGQVLNDPKQQTFGVVPTANQDAHGHHYYQVDAYQKTANGGRGHYLNSYFVYLDGSITTKQAN
>NZ_CP012650.1|WP_060677888.1|2999573_3000587_-|hypothetical-protein
MRTYLFIAGLILACLILIIILIAVLVHLHHVNQAADKQAALLKSIRQRLVHQTLTNQEQDRQITKLQTQNNGFRNRLNQAVPHPVAVPQTRRINANSRAIFRSYVIGLDYYQKEFEAALADASARGYFKPYGGYNDPGLKADYLYAKKYRVDANANIGEIQLVEEVDGAERSVRVELKVAEHGYTIGYLPKKQVDEAFNVIDIYANSVMTLSSKTNLTGGEWKMAIDAVDEMQYLNDPNAQNRALPDYGAIDTPLKIKTGKKSYFLQFTLYEMEISNDEIPLYSLVDTVDGQRGSIVEVDAGPISYVIDVQAGPQTGSKITVIPEQIDRVIWVPNWK
>NZ_CP012650.1|WP_060677889.1|3000692_3001214_+|GtrA-family-protein
MILLLHNIFELEETVANGVQWLIKIYHQYQYFWKYALFGFMAALVNVLVFWVLHSVLAEHYLFSNTIAWVLATLFSFFTNKAVVFQSKSQDFWHWCREFISFMLTRGLSYFFDTFLMFVGISLLFWAPLLVKTIDQVLVGLFNYGTSRLIFMESNQKMRMRQQIMKRLSDRNN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP012650_2	2.1\|2180256\|18\|NZ_CP012650\|CRT	2180256-2180273	18	NZ_CP012650.1	1622584-1622601	2	0.889

1. spacer 2.1|2180256|18|NZ_CP012650|CRT matches to position: 1622584-1622601, mismatch: 2, identity: 0.889

gccgctaagaaacataag	CRISPR spacer
gccgctaaggaacatcag	Protospacer
*********.***** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012650_2	2.2\|2180292\|30\|NZ_CP012650\|CRT	2180292-2180321	30	NZ_CP006988	Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence	31047-31076	7	0.767
NZ_CP012650_2	2.2\|2180292\|30\|NZ_CP012650\|CRT	2180292-2180321	30	NC_042345	Phage Salvo, complete genome	4721-4750	8	0.733

1. spacer 2.2|2180292|30|NZ_CP012650|CRT matches to NZ_CP006988 (Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence) position: , mismatch: 7, identity: 0.767

cacaagaagaaagcggccaagaaacataag	CRISPR spacer
cacaagaataaagccgccaagaagctccgg	Protospacer
******** ***** ********.* . .*

2. spacer 2.2|2180292|30|NZ_CP012650|CRT matches to NC_042345 (Phage Salvo, complete genome) position: , mismatch: 8, identity: 0.733

cacaagaagaaagcggccaagaaacataag	CRISPR spacer
ccggggaagtaagcggacaagaaacatact	Protospacer
*  ..**** ****** ***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

274470 : 338436

Staphylococcus_prophage(22.22%)

transposase,integrase

attL 335384:335398|attR 336321:336335

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016511843.1\|274470_275391_+\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.6e-23	31.0
WP_060677009.1\|277231_278311_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_046039218.1\|278408_278897_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_080376211.1\|279044_280388_+	glycosyl hydrolase family 25	A0A2P0ZKX1	Lactobacillus_phage	3.8e-37	33.0
WP_015825567.1\|280469_281528_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_046039220.1\|281675_282428_+	hypothetical protein	NA	NA	NA	NA
WP_060677010.1\|282427_283105_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	8.4e-09	26.8
WP_060677011.1\|284348_285143_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_046039231.1\|285300_286407_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_003640505.1\|286403_286790_-	ribonuclease HI family protein	NA	NA	NA	NA
WP_060677012.1\|286824_287211_+	hypothetical protein	NA	NA	NA	NA
WP_060677013.1\|287304_288960_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_003640508.1\|289292_289742_+	signal peptidase II	NA	NA	NA	NA
WP_011101547.1\|289761_290685_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	1.2e-10	29.1
WP_046039237.1\|290843_291368_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA
WP_003640511.1\|291402_292485_+	carbamoyl phosphate synthase small subunit	NA	NA	NA	NA
WP_060677014.1\|292481_295043_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_060677015.1\|295221_295821_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	1.1e-33	39.8
WP_060677016.1\|295929_296340_-	DUF1801 domain-containing protein	NA	NA	NA	NA
WP_144425335.1\|297014_297814_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_060677017.1\|298454_298826_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_046039249.1\|298829_299555_-	DUF2087 domain-containing protein	NA	NA	NA	NA
WP_046039251.1\|299757_300252_+	NUDIX hydrolase	NA	NA	NA	NA
WP_060677018.1\|300637_301537_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.8e-36	40.1
WP_060677019.1\|301549_302311_+	ABC transporter permease	NA	NA	NA	NA
WP_003640521.1\|302428_304135_-	NFACT family protein	NA	NA	NA	NA
WP_003640522.1\|304620_305043_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011101553.1\|305127_305997_+	DegV family protein	NA	NA	NA	NA
WP_003644400.1\|305998_306433_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003645051.1\|306547_307285_+	DUF975 family protein	NA	NA	NA	NA
WP_060677020.1\|307400_308114_+	hypothetical protein	NA	NA	NA	NA
WP_003644401.1\|308205_308496_+	RNA-binding protein	NA	NA	NA	NA
WP_046039265.1\|308577_309366_+	DUF4931 domain-containing protein	NA	NA	NA	NA
WP_060677021.1\|309568_310756_-	MFS transporter	NA	NA	NA	NA
WP_003644404.1\|311093_311426_+	hypothetical protein	NA	NA	NA	NA
WP_003640531.1\|311453_311762_+	DUF960 domain-containing protein	NA	NA	NA	NA
WP_003645047.1\|311990_312728_+	DUF1003 domain-containing protein	NA	NA	NA	NA
WP_003640533.1\|312863_313721_-	DUF368 domain-containing protein	NA	NA	NA	NA
WP_003640535.1\|313945_315286_+	amino acid permease	NA	NA	NA	NA
WP_060677022.1\|315478_316357_+	hypothetical protein	NA	NA	NA	NA
WP_046039338.1\|316507_316858_-	hypothetical protein	NA	NA	NA	NA
WP_060677023.1\|318590_319940_-	hypothetical protein	NA	NA	NA	NA
WP_011373852.1\|320167_321088_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_003645042.1\|321257_321959_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_046039345.1\|321960_322986_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_060677024.1\|322973_324095_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_060677025.1\|324095_325994_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_046039349.1\|326092_326620_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003644413.1\|326790_327228_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_060677026.1\|327293_328643_+	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	4.7e-27	25.7
WP_013355549.1\|328722_329130_-	hypothetical protein	NA	NA	NA	NA
WP_060677027.1\|329332_330640_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_060677028.1\|330651_332154_+	hypothetical protein	NA	NA	NA	NA
WP_011373852.1\|332359_333280_+\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
335384:335398	attL	NA	NA	NA	NA
WP_046039356.1\|335431_336286_+\|integrase	phage integrase N-terminal SAM-like domain-containing protein	NA	NA	NA	NA
WP_003640551.1\|336498_336699_+	sterile alpha motif-like domain-containing protein	NA	NA	NA	NA
336321:336335	attR	NA	NA	NA	NA
WP_046039358.1\|336865_337378_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_060677029.1\|337506_338436_+\|transposase	IS30-like element ISLpl1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

503970 : 557738

Bodo_saltans_virus(11.11%)

transposase,tRNA,protease,integrase

attL 529487:529504|attR 560556:560573

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080339071.1\|503970_504894_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_144425337.1\|505025_505220_-	hypothetical protein	NA	NA	NA	NA
WP_046039524.1\|505389_505911_-	shikimate kinase	NA	NA	NA	NA
WP_060677082.1\|505912_507010_-	prephenate dehydrogenase	NA	NA	NA	NA
WP_060677083.1\|507012_508311_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_060677084.1\|508324_508852_-	hypothetical protein	NA	NA	NA	NA
WP_046039532.1\|508860_510030_-	chorismate synthase	NA	NA	NA	NA
WP_060677085.1\|510022_511465_-	MFS transporter	NA	NA	NA	NA
WP_003640723.1\|512062_512416_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_046039536.1\|512438_515003_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	2.1e-20	23.4
WP_003640725.1\|515017_515323_-	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA
WP_003640726.1\|515312_515612_-	YlxR family protein	NA	NA	NA	NA
WP_060677086.1\|515656_516874_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_046039544.1\|516894_517371_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_003640729.1\|517666_521980_-	DNA polymerase III subunit alpha	A0A1X9SH08	Bradyrhizobium_phage	1.0e-14	34.0
WP_003640732.1\|522473_524183_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_003640733.1\|524222_525500_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_003640734.1\|525537_526323_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_046039550.1\|526338_527118_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	6.9e-23	42.3
WP_003640736.1\|527237_527801_-	ribosome recycling factor	NA	NA	NA	NA
WP_003640737.1\|527802_528525_-	UMP kinase	NA	NA	NA	NA
WP_003644498.1\|528724_529603_-	elongation factor Ts	NA	NA	NA	NA
529487:529504	attL	NA	NA	NA	NA
WP_060677087.1\|529705_530518_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_046039552.1\|530742_531465_+	HAD family hydrolase	NA	NA	NA	NA
WP_003561810.1\|532132_533062_+\|transposase	IS30-like element ISLpl1 family transposase	NA	NA	NA	NA
WP_046039554.1\|533468_533714_-	hypothetical protein	NA	NA	NA	NA
WP_046039557.1\|533726_533924_-	hypothetical protein	NA	NA	NA	NA
WP_052697201.1\|534373_534661_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157262540.1\|536048_536231_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2I6AZV9	Macacine_betaherpesvirus	2.3e-06	53.2
WP_052697202.1\|536223_536370_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_003640741.1\|536478_537477_-	D-2-hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	2.3e-47	34.9
WP_046039561.1\|537561_537867_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_046039562.1\|537850_538609_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_025015626.1\|538720_539356_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_003640745.1\|539413_539650_-	YneF family protein	NA	NA	NA	NA
WP_011373852.1\|539719_540640_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_003644501.1\|540784_541024_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003640747.1\|541175_541808_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	2.3e-16	56.2
WP_144425359.1\|541897_542128_-	DNA alkylation repair protein	NA	NA	NA	NA
WP_060677088.1\|542431_543061_+	hypothetical protein	NA	NA	NA	NA
WP_060677089.1\|543110_544280_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
WP_046039564.1\|544871_545264_+	hypothetical protein	NA	NA	NA	NA
WP_046039565.1\|545728_546670_+	glycosyltransferase family 2 protein	V9QJB1	Oenococcus_phage	3.1e-78	48.7
WP_160316022.1\|547126_548572_+	hypothetical protein	NA	NA	NA	NA
WP_135293886.1\|548992_549202_-	hypothetical protein	NA	NA	NA	NA
WP_046039647.1\|549394_549595_-	hypothetical protein	NA	NA	NA	NA
WP_160316023.1\|551220_551385_-	hypothetical protein	NA	NA	NA	NA
WP_003640763.1\|552388_552595_-	hypothetical protein	NA	NA	NA	NA
WP_060677091.1\|552769_553531_-	hypothetical protein	NA	NA	NA	NA
WP_003640765.1\|553642_553990_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_060677092.1\|554084_555296_-	MFS transporter	NA	NA	NA	NA
WP_003640767.1\|555411_555996_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060677093.1\|556061_557738_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.4e-92	41.3
560556:560573	attR	NA	NA	NA	NA

DBSCAN-SWA_3

793968 : 858704

Bacillus_phage(20.0%)

transposase,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016511843.1\|793968_794889_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.6e-23	31.0
WP_003641465.1\|795243_796248_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003644649.1\|796488_798744_-	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA	NA	NA	NA
WP_003641463.1\|798853_800134_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	9.7e-99	47.8
WP_003641462.1\|800764_801049_+	hypothetical protein	NA	NA	NA	NA
WP_003644650.1\|801115_801598_+	universal stress protein	NA	NA	NA	NA
WP_060677148.1\|801686_802817_-	serine hydrolase	NA	NA	NA	NA
WP_003641460.1\|802933_803830_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060677149.1\|804279_805839_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_021357478.1\|805914_807027_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_060677150.1\|807128_808157_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_060677151.1\|808178_809153_-	DUF2785 domain-containing protein	NA	NA	NA	NA
WP_003641455.1\|809351_810269_-	L-lactate dehydrogenase	NA	NA	NA	NA
WP_003645414.1\|810511_811336_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_152707287.1\|811361_811997_-	ABC transporter permease	NA	NA	NA	NA
WP_003641452.1\|812046_813078_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-28	36.4
WP_060677152.1\|813445_813742_-	glycine cleavage system protein H	NA	NA	NA	NA
WP_060677153.1\|813772_814978_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_003641449.1\|815125_815353_-	DUF2969 domain-containing protein	NA	NA	NA	NA
WP_003644657.1\|815336_815609_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	9.8e-17	47.7
WP_003644658.1\|815615_816617_-	rod shape-determining protein	NA	NA	NA	NA
WP_003641446.1\|816740_817295_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003644659.1\|817402_818719_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_060677154.1\|819692_820121_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_003641443.1\|820132_821536_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_003641442.1\|821560_822505_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_003641441.1\|822534_824055_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_003641440.1\|824077_824623_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_050339397.1\|824612_825128_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_003639224.1\|825181_825394_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_060677155.1\|825431_826145_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_003641437.1\|826422_827703_-	uracil transporter	Q9KX94	Enterobacteria_phage	1.8e-65	37.3
WP_003639227.1\|828855_829485_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_003641436.1\|829564_830803_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	1.4e-94	50.6
WP_003645419.1\|830861_831881_-	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	9.3e-52	41.5
WP_003645420.1\|832171_833038_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_003641433.1\|833030_834113_-	peptide chain release factor 1	NA	NA	NA	NA
WP_003644660.1\|834126_834705_-	thymidine kinase	A0A249XZX5	Enterococcus_phage	7.3e-46	49.7
WP_003641431.1\|834966_836313_+	Mur ligase family protein	NA	NA	NA	NA
WP_060677156.1\|836315_837038_+	glutamine amidotransferase	NA	NA	NA	NA
WP_060677157.1\|837299_838265_-	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA
WP_003644662.1\|838341_839361_-	serine hydrolase	A0A249XPW4	Mycobacterium_phage	1.2e-06	24.2
WP_011101727.1\|839531_839717_-	hypothetical protein	NA	NA	NA	NA
WP_003641425.1\|839967_840996_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_003641424.1\|841127_841490_+	hypothetical protein	NA	NA	NA	NA
WP_060677158.1\|841705_842677_-	hypothetical protein	NA	NA	NA	NA
WP_046039829.1\|842691_844581_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.6e-57	32.1
WP_060677159.1\|844580_846311_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.6e-46	27.4
WP_015825756.1\|846533_846926_-	YxeA family protein	NA	NA	NA	NA
WP_011373852.1\|847169_848090_+\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_060677160.1\|849463_850603_-	ImmA/IrrE family metallo-endopeptidase	B6SBZ6	Clostridium_virus	6.1e-28	28.0
WP_060677161.1\|850608_851289_-	hypothetical protein	NA	NA	NA	NA
WP_060677163.1\|852738_853116_-\|holin	holin	A0A2H4PBB2	Lactobacillus_phage	8.5e-19	66.7
WP_144425340.1\|854670_854829_-	XkdX family protein	NA	NA	NA	NA
WP_060677164.1\|854825_855242_-	hypothetical protein	NA	NA	NA	NA
WP_060677165.1\|855329_856505_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_162490430.1\|856629_857808_-\|tail	phage tail protein	Q9T1A5	Listeria_phage	1.5e-16	22.6
WP_060677167.1\|857807_858704_-\|tail	phage tail family protein	NA	NA	NA	NA

DBSCAN-SWA_4

865765 : 903374

Lactobacillus_phage(45.16%)

terminase,capsid,head,portal,tail,transposase,integrase

attL 880609:880623|attR 914108:914122

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060677175.1\|865765_866131_-\|head,tail	phage head-tail connector protein	A0A1W6JNH7	Staphylococcus_phage	8.0e-06	39.6
WP_060677176.1\|866145_867195_-	hypothetical protein	A0A0S0N2Q7	Pseudomonas_phage	5.3e-34	31.2
WP_060677177.1\|867211_867859_-	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_060677178.1\|867956_868901_-\|capsid	minor capsid protein	NA	NA	NA	NA
WP_080376223.1\|868903_870571_-\|portal	phage portal protein	D2IZF6	Enterococcus_phage	1.4e-65	32.8
WP_060677179.1\|870560_871859_-\|terminase	PBSX family phage terminase large subunit	B7T0C6	Staphylococcus_virus	2.4e-113	49.4
WP_060677180.1\|872063_872573_-\|terminase	terminase small subunit	O03926	Lactobacillus_phage	1.0e-46	63.2
WP_080376290.1\|872613_872883_-	DUF2829 domain-containing protein	A0A0K2FLC4	Brevibacillus_phage	3.6e-11	43.2
WP_060677182.1\|873614_874076_-	transcriptional regulator	D6PSV8	Lactobacillus_phage	1.1e-39	57.0
WP_060677183.1\|874452_874893_-	hypothetical protein	A0A2K9VD94	Lactobacillus_phage	6.6e-47	59.4
WP_060677184.1\|874889_875099_-	hypothetical protein	NA	NA	NA	NA
WP_060677185.1\|875091_875523_-	hypothetical protein	Q5ULU9	Lactobacillus_virus	1.3e-44	62.1
WP_187329203.1\|875506_875683_-	hypothetical protein	E9LUP2	Lactobacillus_phage	8.8e-19	81.0
WP_144425341.1\|875685_875844_-	hypothetical protein	A0A2P0ZLB5	Lactobacillus_phage	6.7e-18	92.3
WP_080376291.1\|875836_876052_-	helix-turn-helix transcriptional regulator	D2IZX1	Enterococcus_phage	6.1e-06	39.1
WP_064505709.1\|876185_876350_+	YjzC family protein	A0A0A7RTS6	Clostridium_phage	3.0e-13	66.0
WP_060677187.1\|876662_876860_-	hypothetical protein	O03916	Lactobacillus_phage	3.9e-15	56.9
WP_060677188.1\|876856_877276_-	RusA family crossover junction endodeoxyribonuclease	A8YQM5	Lactobacillus_phage	1.3e-23	42.3
WP_060677189.1\|877268_877802_-	hypothetical protein	O03915	Lactobacillus_phage	1.7e-36	52.3
WP_060677190.1\|877798_878086_-	hypothetical protein	NA	NA	NA	NA
WP_060677191.1\|878082_879015_-	DUF4373 domain-containing protein	A0A0P0HRQ2	Lactobacillus_phage	5.1e-57	44.0
WP_060677192.1\|879097_880063_-	hypothetical protein	A6M982	Geobacillus_virus	2.6e-64	54.5
WP_080376226.1\|880074_880605_-	host-nuclease inhibitor Gam family protein	E9LUU0	Lactobacillus_phage	3.0e-54	58.6
880609:880623	attL	NA	NA	NA	NA
WP_060677194.1\|881106_881619_-	helix-turn-helix transcriptional regulator	D6PST4	Lactobacillus_phage	4.0e-27	42.9
WP_060677195.1\|881686_881992_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_003642792.1\|882003_882174_-	hypothetical protein	NA	NA	NA	NA
WP_060677196.1\|882198_882495_-	hypothetical protein	NA	NA	NA	NA
WP_027821904.1\|882494_882701_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003642789.1\|882842_883073_+	helix-turn-helix transcriptional regulator	A0A0K2CNE2	Brevibacillus_phage	8.5e-06	36.8
WP_033608056.1\|883072_883471_+	DUF2513 domain-containing protein	A0A1P8L6H1	Staphylococcus_phage	5.1e-14	38.4
WP_060677197.1\|883467_883650_-	hypothetical protein	NA	NA	NA	NA
WP_060677198.1\|883726_883954_-	hypothetical protein	NA	NA	NA	NA
WP_060677199.1\|883950_884178_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011101778.1\|884306_884669_+	helix-turn-helix domain-containing protein	A0A2R2ZGJ3	Clostridioides_phage	1.7e-08	48.4
WP_060677200.1\|884680_885097_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_060677201.1\|885170_885530_+	hypothetical protein	NA	NA	NA	NA
WP_022638129.1\|885560_885842_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_060677202.1\|886129_886525_+	hypothetical protein	NA	NA	NA	NA
WP_060677203.1\|886620_887304_+	DUF1828 domain-containing protein	Q6SEA4	Lactobacillus_prophage	1.1e-29	38.3
WP_060677204.1\|887411_888587_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_060677205.1\|888944_890066_+\|integrase	site-specific integrase	D6PSS4	Lactobacillus_phage	4.9e-46	32.4
WP_060677206.1\|890417_890624_-	hypothetical protein	NA	NA	NA	NA
WP_046783498.1\|891043_891349_-	hypothetical protein	NA	NA	NA	NA
WP_060677207.1\|892847_893141_-	hypothetical protein	NA	NA	NA	NA
WP_097558290.1\|893157_893957_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_027823052.1\|894202_894472_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_060677208.1\|894881_896462_-\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	1.3e-41	26.8
WP_060677209.1\|896451_897558_-\|portal	phage portal protein	A0A2H4J9Q5	uncultured_Caudovirales_phage	1.0e-48	33.3
WP_033611503.1\|897558_897759_-	hypothetical protein	NA	NA	NA	NA
WP_060677210.1\|897712_899416_-\|terminase	terminase large subunit	A0A2H4JBN3	uncultured_Caudovirales_phage	9.2e-121	40.3
WP_046947487.1\|899412_899886_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_060677211.1\|900501_900891_-	HNH endonuclease	A0A1J0MFT4	Staphylococcus_phage	7.9e-20	46.1
WP_054519350.1\|900883_901222_-\|head	phage head closure protein	A0A2P0ZLF0	Lactobacillus_phage	1.9e-09	36.6
WP_046947484.1\|901231_901414_-	sporulation protein Cse60	NA	NA	NA	NA
WP_060677212.1\|901437_901857_-	hypothetical protein	NA	NA	NA	NA
WP_060677213.1\|901979_903374_-	virulence protein	Q4ZD27	Staphylococcus_phage	2.7e-70	35.7
914108:914122	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1103385 : 1111896

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046040135.1\|1103385_1103964_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.1e-21	33.9
WP_046040137.1\|1103956_1104982_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	1.6e-59	41.0
WP_003642591.1\|1104978_1106433_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.5e-50	34.0
WP_003645864.1\|1106417_1108637_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.5e-144	39.3
WP_011101895.1\|1108629_1109310_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003642588.1\|1109309_1109564_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003642587.1\|1109565_1110297_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	1.6e-37	37.3
WP_015380738.1\|1110299_1111430_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_003645861.1\|1111413_1111896_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.3e-16	41.0

DBSCAN-SWA_6

1248387 : 1317067

Bacillus_phage(27.27%)

tRNA,bacteriocin,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060677325.1\|1248387_1249563_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_024002913.1\|1250739_1251333_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_046040269.1\|1251481_1252654_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_060677326.1\|1252643_1253510_-	DUF3737 family protein	NA	NA	NA	NA
WP_060677327.1\|1253612_1254641_-	aldo/keto reductase	NA	NA	NA	NA
WP_060677328.1\|1255278_1257066_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.9e-44	25.2
WP_060677329.1\|1257065_1258817_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.5e-54	30.8
WP_060677330.1\|1259087_1260482_+	MFS transporter	NA	NA	NA	NA
WP_016511843.1\|1260655_1261576_+\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.6e-23	31.0
WP_060677331.1\|1262011_1262569_+	hypothetical protein	NA	NA	NA	NA
WP_060677332.1\|1262720_1266428_-	YhgE/Pip domain-containing protein	NA	NA	NA	NA
WP_060677333.1\|1266452_1267007_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003642181.1\|1267104_1267434_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046040291.1\|1267931_1268876_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_046040292.1\|1268952_1269498_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012490951.1\|1269664_1270663_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.5e-49	38.4
WP_046040293.1\|1270880_1271408_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_046040294.1\|1271484_1272315_-	hypothetical protein	NA	NA	NA	NA
WP_060677334.1\|1272782_1273988_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003644778.1\|1274066_1275689_-	ATP-binding cassette domain-containing protein	A0A1V0SKJ1	Klosneuvirus	8.4e-47	26.9
WP_060677335.1\|1276002_1276797_-	HAD family hydrolase	NA	NA	NA	NA
WP_052697211.1\|1276883_1278809_-	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_046040314.1\|1281674_1282889_-	MFS transporter	NA	NA	NA	NA
WP_060677336.1\|1282988_1283900_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060677337.1\|1284334_1285231_+	proline iminopeptidase-family hydrolase	NA	NA	NA	NA
WP_046040321.1\|1285376_1286744_+	APC family permease	NA	NA	NA	NA
WP_060677338.1\|1286832_1288083_-	MFS transporter	NA	NA	NA	NA
WP_046040325.1\|1288190_1289486_-	alkaline phosphatase family protein	A0A1V0QG10	Shearwaterpox_virus	1.0e-07	21.3
WP_060677339.1\|1289612_1290443_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003644867.1\|1290619_1291339_+	UTRA domain-containing protein	NA	NA	NA	NA
WP_060677340.1\|1291721_1294226_-	choice-of-anchor A family protein	NA	NA	NA	NA
WP_003642199.1\|1294615_1294858_-	cytochrome b5	NA	NA	NA	NA
WP_003644869.1\|1295369_1295903_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_060677341.1\|1296347_1297478_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	7.4e-18	34.0
WP_003642202.1\|1297493_1298174_-	EAL domain-containing protein	NA	NA	NA	NA
WP_060677342.1\|1298384_1298966_-	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A0C5K925	Enterococcus_phage	3.0e-55	59.7
WP_046040379.1\|1298898_1301121_-	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	1.8e-249	58.9
WP_060677343.1\|1301569_1302043_+	hypothetical protein	NA	NA	NA	NA
WP_003644790.1\|1302185_1302596_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	1.5e-13	43.8
WP_011101977.1\|1302677_1303679_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_003642208.1\|1303867_1304872_-\|tRNA	tRNA-dihydrouridine synthase family protein	NA	NA	NA	NA
WP_003642209.1\|1305047_1305242_-	hypothetical protein	NA	NA	NA	NA
WP_060677344.1\|1305557_1306817_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_046040343.1\|1307257_1308160_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003642213.1\|1308222_1309602_-	SLC13 family permease	NA	NA	NA	NA
WP_003644796.1\|1309738_1311211_-	UbiD family decarboxylase	NA	NA	NA	NA
WP_060677345.1\|1312350_1313799_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA
WP_015380849.1\|1313817_1314789_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_060677346.1\|1314785_1316459_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	4.7e-93	41.5
WP_003642218.1\|1316660_1316810_-	hypothetical protein	NA	NA	NA	NA
WP_003642219.1\|1316809_1317067_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_7

1427108 : 1449643

unidentified_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144425333.1\|1427108_1427907_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_060677381.1\|1428402_1429032_+	L,D-transpeptidase	NA	NA	NA	NA
WP_060677382.1\|1429163_1431065_-	asparagine synthase (glutamine-hydrolyzing)	R4TIC1	Phaeocystis_globosa_virus	6.2e-33	29.6
WP_003643388.1\|1431540_1432287_-	response regulator transcription factor	NA	NA	NA	NA
WP_060677383.1\|1432291_1433542_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_060677384.1\|1433943_1434231_+\|transposase	transposase	NA	NA	NA	NA
WP_060677385.1\|1434254_1435133_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	6.3e-41	35.7
WP_003642336.1\|1435218_1435800_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_046040534.1\|1435933_1436848_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_060677386.1\|1436887_1438300_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_060677387.1\|1438647_1441236_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_054398737.1\|1441522_1441807_+	DUF1905 domain-containing protein	NA	NA	NA	NA
WP_144425333.1\|1442262_1443061_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_060677388.1\|1444257_1444830_-	WxL domain-containing protein	NA	NA	NA	NA
WP_060677389.1\|1446117_1447038_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	3.7e-23	30.7
WP_060677390.1\|1448722_1449643_+\|transposase	IS30 family transposase	H7BW61	unidentified_phage	5.6e-24	31.4

DBSCAN-SWA_8

1494733 : 1555902

Staphylococcus_prophage(13.33%)

bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011373852.1\|1494733_1495654_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_003642439.1\|1495923_1496727_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_046040723.1\|1496804_1497503_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003642441.1\|1497514_1498276_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-27	36.0
WP_053267529.1\|1498749_1499565_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_060677405.1\|1499733_1500309_-	zinc ribbon domain-containing protein	D6PSS6	Lactobacillus_phage	9.6e-22	38.0
WP_003642445.1\|1500670_1500988_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_015826022.1\|1500984_1501623_+	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_003645322.1\|1501606_1502542_+	DUF4097 domain-containing protein	NA	NA	NA	NA
WP_060677406.1\|1502627_1504553_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA
WP_060677407.1\|1504545_1506213_-	alpha-glucosidase	NA	NA	NA	NA
WP_011102083.1\|1506266_1507268_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_060677408.1\|1507569_1508655_-	YdcF family protein	NA	NA	NA	NA
WP_003643458.1\|1508730_1509486_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_003642453.1\|1509482_1510133_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.2e-22	31.5
WP_003642454.1\|1510281_1511727_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	4.9e-83	37.7
WP_003642455.1\|1511765_1512209_+	hypothetical protein	NA	NA	NA	NA
WP_046040628.1\|1512521_1513373_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_060677409.1\|1513487_1514312_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_011102089.1\|1514401_1514851_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003645311.1\|1514944_1515808_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_060677410.1\|1516024_1518019_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_060677411.1\|1518273_1518942_-	endonuclease III	NA	NA	NA	NA
WP_060677412.1\|1519057_1519315_-	hypothetical protein	NA	NA	NA	NA
WP_060677413.1\|1519349_1519901_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	4.7e-34	40.9
WP_060677414.1\|1520283_1521558_+	hypothetical protein	NA	NA	NA	NA
WP_060677415.1\|1521693_1522293_-	hypothetical protein	NA	NA	NA	NA
WP_003643467.1\|1522482_1522965_+	transcriptional repressor	NA	NA	NA	NA
WP_003643468.1\|1523758_1523986_-	PLDc N-terminal domain-containing protein	NA	NA	NA	NA
WP_015826037.1\|1524040_1524913_-	metallophosphoesterase	NA	NA	NA	NA
WP_003642476.1\|1525344_1525887_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060677416.1\|1526259_1527258_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.2e-49	38.4
WP_003642477.1\|1527418_1527838_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_003642478.1\|1527857_1528586_-	LrgB family protein	NA	NA	NA	NA
WP_011102096.1\|1528760_1529600_-	DegV family protein	NA	NA	NA	NA
WP_003642481.1\|1530124_1530292_-	hypothetical protein	NA	NA	NA	NA
WP_003642482.1\|1530459_1531158_+	zinc metallopeptidase	NA	NA	NA	NA
WP_011102097.1\|1531764_1533261_+	phytoene desaturase	NA	NA	NA	NA
WP_060677417.1\|1533241_1534123_+	phytoene/squalene synthase family protein	NA	NA	NA	NA
WP_003642486.1\|1534484_1535426_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_060677418.1\|1535491_1536604_-	glycerate kinase	W6LM47	Streptococcus_phage	2.3e-35	35.3
WP_046040654.1\|1536739_1538074_+	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	7.9e-27	26.9
WP_003642489.1\|1538268_1538598_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003642490.1\|1538820_1540119_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	3.8e-18	33.6
WP_003643473.1\|1540435_1541725_+	adenylosuccinate synthase	L7Y4J5	Megavirus	3.5e-72	37.0
WP_024272289.1\|1541773_1542745_+	GMP reductase	Q4ZCY7	Staphylococcus_virus	1.4e-137	71.2
WP_003645476.1\|1543730_1545179_-	cardiolipin synthase	NA	NA	NA	NA
WP_003642495.1\|1545315_1545465_+	hypothetical protein	NA	NA	NA	NA
WP_046040659.1\|1545777_1546260_-	membrane protein	NA	NA	NA	NA
WP_060677419.1\|1547169_1548594_+	amino acid permease	NA	NA	NA	NA
WP_060677420.1\|1548855_1550895_+	KUP/HAK/KT family potassium transporter	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	1.0e-62	33.5
WP_010011610.1\|1550880_1551759_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.0e-42	36.4
WP_003688751.1\|1551782_1552070_-\|transposase	transposase	NA	NA	NA	NA
WP_060677421.1\|1552292_1553237_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_060677422.1\|1553565_1554612_-	AI-2E family transporter	NA	NA	NA	NA
WP_011373852.1\|1554981_1555902_+\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2

DBSCAN-SWA_9

1753218 : 1780266

Staphylococcus_prophage(20.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011373852.1\|1753218_1754139_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_060677472.1\|1754890_1755580_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_003646217.1\|1755718_1756924_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003642922.1\|1757391_1757763_+	hypothetical protein	NA	NA	NA	NA
WP_060677936.1\|1757958_1758465_-	folate family ECF transporter S component	NA	NA	NA	NA
WP_060677473.1\|1758489_1759410_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.3e-23	31.0
WP_003643582.1\|1759892_1760138_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_060677474.1\|1760483_1761938_+	catalase	A0A2K9L572	Tupanvirus	3.3e-103	45.9
WP_003642927.1\|1762095_1762533_-	transcriptional regulator Spx	NA	NA	NA	NA
WP_046040953.1\|1762888_1763632_-	response regulator transcription factor	NA	NA	NA	NA
WP_060677165.1\|1764313_1765489_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_003643585.1\|1766256_1766385_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA
WP_003642930.1\|1766365_1766962_-	accessory gene regulator AgrB	NA	NA	NA	NA
WP_003642931.1\|1767329_1769444_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	3.1e-118	38.7
WP_003642932.1\|1769834_1770068_-	hypothetical protein	NA	NA	NA	NA
WP_015826155.1\|1770704_1771805_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_080339122.1\|1771831_1773586_-	pyruvate oxidase	NA	NA	NA	NA
WP_003642935.1\|1773667_1774093_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_060677475.1\|1774265_1776077_-	pyruvate oxidase	NA	NA	NA	NA
WP_003641596.1\|1776447_1776825_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA
WP_060677476.1\|1776852_1777872_-	PTS glucitol/sorbitol transporter subunit IIB	NA	NA	NA	NA
WP_003641598.1\|1777895_1778447_-	PTS glucitol/sorbitol transporter subunit IIC	NA	NA	NA	NA
WP_003641599.1\|1778451_1778958_-	transcriptional regulator GutM	NA	NA	NA	NA
WP_010011610.1\|1779076_1779955_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.0e-42	36.4
WP_003688751.1\|1779978_1780266_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_10

2100970 : 2155393

Staphylococcus_phage(20.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046038032.1\|2100970_2101732_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_021356930.1\|2101827_2102547_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_060677586.1\|2102668_2103472_-	LysM peptidoglycan-binding domain-containing protein	A0A2K9V574	Lactobacillus_phage	1.6e-14	50.8
WP_012490951.1\|2104566_2105565_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.5e-49	38.4
WP_060677587.1\|2105645_2106287_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_060677588.1\|2106691_2107069_-	glycine cleavage system protein H	NA	NA	NA	NA
WP_003643727.1\|2107075_2107993_-	sce7725 family protein	NA	NA	NA	NA
WP_003641880.1\|2107989_2108706_-	hypothetical protein	A0A1I9S5V4	Bacillus_phage	1.9e-19	37.1
WP_060677589.1\|2108705_2111075_-	ATP-dependent DNA helicase	NA	NA	NA	NA
WP_015825092.1\|2111484_2111847_-	hypothetical protein	NA	NA	NA	NA
WP_060677590.1\|2112035_2113232_+	acetate kinase	NA	NA	NA	NA
WP_011100961.1\|2113358_2113802_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060677591.1\|2113875_2114298_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060677592.1\|2114486_2115689_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_027821528.1\|2115820_2116153_+	hypothetical protein	NA	NA	NA	NA
WP_003641891.1\|2116252_2117323_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060677593.1\|2117319_2118135_-	ABC transporter permease	NA	NA	NA	NA
WP_060677594.1\|2118134_2118968_-	ABC transporter permease	Q6GZ02	Mycoplasma_phage	3.8e-11	22.5
WP_003641894.1\|2118979_2120077_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.5e-36	41.6
WP_003646424.1\|2120147_2120690_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060677595.1\|2120756_2120978_+	hypothetical protein	NA	NA	NA	NA
WP_003641896.1\|2121073_2121541_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_060677596.1\|2121727_2122213_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060677597.1\|2122216_2122744_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003641899.1\|2122837_2123023_+	hypothetical protein	NA	NA	NA	NA
WP_060677598.1\|2123283_2123637_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_060677599.1\|2123636_2124530_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_060677600.1\|2124542_2125556_+	ABC-2 transporter permease	NA	NA	NA	NA
WP_003641903.1\|2125661_2127029_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_003641904.1\|2127454_2128318_+	class II fructose-1,6-bisphosphate aldolase	NA	NA	NA	NA
WP_080339024.1\|2128603_2128798_+	helix-turn-helix transcriptional regulator	A0A142LP09	Marinitoga_camini_virus	5.9e-08	46.6
WP_143142903.1\|2128874_2129126_+	hypothetical protein	NA	NA	NA	NA
WP_060677601.1\|2129280_2130597_-	MFS transporter	NA	NA	NA	NA
WP_003643746.1\|2130766_2131669_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_003641907.1\|2131681_2131882_-	hypothetical protein	NA	NA	NA	NA
WP_060677603.1\|2132465_2133854_+	C69 family dipeptidase	NA	NA	NA	NA
WP_003641910.1\|2133919_2134165_+	hypothetical protein	NA	NA	NA	NA
WP_003643749.1\|2134293_2134857_+	biotin transporter BioY	NA	NA	NA	NA
WP_046038068.1\|2134894_2135866_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_046038069.1\|2135854_2136130_-	hypothetical protein	NA	NA	NA	NA
WP_160316026.1\|2136304_2136463_+	hypothetical protein	NA	NA	NA	NA
WP_046038071.1\|2136579_2137419_+	methionine ABC transporter ATPase	NA	NA	NA	NA
WP_046038074.1\|2137431_2138460_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.9e-28	34.5
WP_003643753.1\|2138452_2139115_+	ABC transporter permease	NA	NA	NA	NA
WP_046038077.1\|2139135_2140119_+	ketopantoate reductase family protein	NA	NA	NA	NA
WP_046038079.1\|2140121_2141297_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_060677604.1\|2141566_2143219_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	2.7e-93	41.5
WP_046038081.1\|2143236_2144403_-	hypothetical protein	NA	NA	NA	NA
WP_003641920.1\|2144987_2145803_+	ABC transporter permease	NA	NA	NA	NA
WP_003641921.1\|2145815_2146907_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.2e-18	29.7
WP_060677325.1\|2147353_2148529_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_060677605.1\|2149143_2149686_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046038088.1\|2149682_2151128_+	MFS transporter	NA	NA	NA	NA
WP_046038090.1\|2151455_2152772_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	8.6e-34	29.6
WP_024002427.1\|2153267_2154227_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_003641927.1\|2154329_2154599_+	hypothetical protein	NA	NA	NA	NA
WP_060677606.1\|2154829_2155393_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_11

2194983 : 2259859

Staphylococcus_prophage(22.22%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011373852.1\|2194983_2195904_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_060677625.1\|2197185_2197875_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_060677626.1\|2197942_2198611_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_060677627.1\|2198697_2199378_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_046038202.1\|2200295_2200499_+	hypothetical protein	NA	NA	NA	NA
WP_060677628.1\|2200593_2202903_-	ATP-binding domain-containing protein	NA	NA	NA	NA
WP_046038207.1\|2203161_2203938_+	carbon-nitrogen family hydrolase	NA	NA	NA	NA
WP_003643815.1\|2204371_2205388_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_003641997.1\|2205794_2206505_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_060677629.1\|2206577_2207939_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_003641999.1\|2207945_2208134_+	hypothetical protein	NA	NA	NA	NA
WP_003642000.1\|2208123_2208546_+	DUF3284 domain-containing protein	NA	NA	NA	NA
WP_003643816.1\|2208768_2210124_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_046038215.1\|2210141_2211578_+	6-phospho-beta-glucosidase	A0A0B5JD41	Pandoravirus	5.7e-31	25.5
WP_003642003.1\|2211698_2212595_+	ROK family protein	NA	NA	NA	NA
WP_003642004.1\|2212744_2213491_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_060677630.1\|2213603_2214617_+\|tRNA	tRNA-dihydrouridine synthase family protein	NA	NA	NA	NA
WP_003642008.1\|2215058_2215976_+	Ppx/GppA family phosphatase	NA	NA	NA	NA
WP_060677631.1\|2216021_2217296_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
WP_003642010.1\|2217288_2218248_+	hypothetical protein	NA	NA	NA	NA
WP_060677632.1\|2218269_2218974_+	NAD-dependent protein deacylase	NA	NA	NA	NA
WP_003642012.1\|2218973_2219816_+	DUF72 domain-containing protein	NA	NA	NA	NA
WP_015825136.1\|2220412_2220802_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_060677633.1\|2221123_2223175_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	2.7e-90	35.8
WP_046038231.1\|2223661_2224036_+	hypothetical protein	NA	NA	NA	NA
WP_060677634.1\|2224316_2225501_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_043992601.1\|2225534_2226425_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_046038237.1\|2226987_2227476_+	hypothetical protein	NA	NA	NA	NA
WP_003643825.1\|2227722_2228499_+	TatD family hydrolase	NA	NA	NA	NA
WP_011101014.1\|2228485_2229049_+	ribonuclease M5	NA	NA	NA	NA
WP_003642019.1\|2229045_2229936_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003642020.1\|2230040_2230292_+	Veg family protein	NA	NA	NA	NA
WP_003643828.1\|2230424_2231291_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_060677635.1\|2232014_2232713_+	ABC transporter ATP-binding protein	A0A1V0SGN0	Hokovirus	1.2e-15	27.8
WP_003646500.1\|2232705_2233503_+	metal ABC transporter permease	NA	NA	NA	NA
WP_060677636.1\|2233859_2234696_+	pur operon repressor	NA	NA	NA	NA
WP_003642031.1\|2234764_2236147_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L140	Tupanvirus	5.7e-28	33.2
WP_060677637.1\|2236382_2237207_+	serine hydrolase	NA	NA	NA	NA
WP_060677638.1\|2237572_2238553_+	ribose-phosphate diphosphokinase	A0A1V0SHF7	Hokovirus	1.9e-41	34.2
WP_003646506.1\|2238841_2239864_+	YdcF family protein	NA	NA	NA	NA
WP_003643831.1\|2239946_2240933_+	lipoprotein	NA	NA	NA	NA
WP_015379810.1\|2241102_2241912_-	sugar-phosphatase	NA	NA	NA	NA
WP_187329206.1\|2241931_2243290_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	8.1e-27	33.3
WP_046038265.1\|2243298_2244231_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_003642040.1\|2244591_2245032_+	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003642041.1\|2245076_2245685_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
WP_003642042.1\|2245857_2247471_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.2e-143	49.9
WP_060677640.1\|2247658_2248579_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	1.2e-50	38.2
WP_060677642.1\|2249365_2250019_+	L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta	NA	NA	NA	NA
WP_060677643.1\|2250037_2250937_+	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA
WP_003643839.1\|2251087_2251816_+	PAS domain-containing protein	NA	NA	NA	NA
WP_003643840.1\|2252397_2252592_+	hypothetical protein	NA	NA	NA	NA
WP_060677644.1\|2253132_2254413_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_003642051.1\|2254442_2255735_+	transcription termination factor Rho	NA	NA	NA	NA
WP_003637671.1\|2255861_2256107_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_060677645.1\|2256239_2257376_-	hypothetical protein	NA	NA	NA	NA
WP_003642053.1\|2257574_2258279_+	class A sortase	NA	NA	NA	NA
WP_003642054.1\|2258387_2258948_+	LemA family protein	NA	NA	NA	NA
WP_060677646.1\|2258959_2259859_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA

DBSCAN-SWA_12

2384170 : 2392794

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003644909.1\|2384170_2385868_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	3.9e-55	37.0
WP_003640956.1\|2385889_2386198_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_003637790.1\|2386213_2386813_+	recombination protein RecR	NA	NA	NA	NA
WP_003640957.1\|2386827_2387079_+	YaaL family protein	NA	NA	NA	NA
WP_016510978.1\|2387476_2388142_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.4e-53	52.7
WP_003640965.1\|2388138_2388468_+	cyclic-di-AMP receptor	NA	NA	NA	NA
WP_003640966.1\|2388484_2389504_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.1e-32	33.5
WP_003640967.1\|2389528_2389876_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	2.4e-12	33.3
WP_060677678.1\|2389974_2390871_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.7e-81	55.3
WP_003640969.1\|2390874_2391660_+	acyl-ACP thioesterase	NA	NA	NA	NA
WP_016510980.1\|2391798_2392794_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.0e-50	37.9

DBSCAN-SWA_13

2520770 : 2573705

Bacillus_phage(27.27%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003592463.1\|2520770_2521700_-\|transposase	IS30-like element ISLpl1 family transposase	NA	NA	NA	NA
WP_060677711.1\|2521936_2523370_-	MFS transporter	NA	NA	NA	NA
WP_060677712.1\|2523539_2524493_-	exopolyphosphatase	NA	NA	NA	NA
WP_003641095.1\|2524495_2526652_-	RNA degradosome polyphosphate kinase	NA	NA	NA	NA
WP_003641096.1\|2526652_2528182_-	HD domain-containing protein	NA	NA	NA	NA
WP_003645798.1\|2528506_2529316_-	LicD family protein	A0A1V0SD50	Indivirus	7.2e-07	32.4
WP_060677946.1\|2529484_2529958_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_003641099.1\|2530172_2530334_-	hypothetical protein	NA	NA	NA	NA
WP_003644001.1\|2530613_2531921_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	3.7e-45	30.5
WP_060677713.1\|2532538_2534278_+	pyruvate oxidase	NA	NA	NA	NA
WP_003644002.1\|2534418_2535267_+	FAD synthetase family protein	NA	NA	NA	NA
WP_060677714.1\|2535598_2537359_+	pyruvate oxidase	NA	NA	NA	NA
WP_060677947.1\|2537480_2538389_-	proline-specific peptidase family protein	NA	NA	NA	NA
WP_060677948.1\|2538843_2539833_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_003644006.1\|2540254_2542237_+	acetyltransferase	W6MVL2	Pseudomonas_phage	3.3e-29	29.1
WP_060677715.1\|2542401_2544843_-	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA
WP_060677716.1\|2544962_2545382_+	OsmC family protein	NA	NA	NA	NA
WP_003645790.1\|2545499_2545802_-	hypothetical protein	NA	NA	NA	NA
WP_003644008.1\|2545952_2547350_-	amino acid permease	NA	NA	NA	NA
WP_003641111.1\|2547855_2548329_+	alcohol dehydrogenase	A0A218KDM1	Bacillus_phage	2.4e-10	51.7
WP_060677717.1\|2548692_2549511_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_003644009.1\|2549564_2549984_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_003641114.1\|2550060_2550210_-	hypothetical protein	NA	NA	NA	NA
WP_060677718.1\|2550360_2550942_+	guanylate kinase	A0A218KC48	Bacillus_phage	5.0e-10	27.9
WP_003641116.1\|2551052_2551496_+	transcriptional repressor	NA	NA	NA	NA
WP_060677719.1\|2551637_2552147_+	hypothetical protein	NA	NA	NA	NA
WP_003641118.1\|2552150_2552969_+	hypothetical protein	NA	NA	NA	NA
WP_060677720.1\|2553161_2553788_-	HAD family hydrolase	NA	NA	NA	NA
WP_080339030.1\|2554193_2555384_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_046038502.1\|2555386_2556379_+	D-2-hydroxyacid dehydrogenase	M1HI29	Paramecium_bursaria_Chlorella_virus	2.9e-42	34.3
WP_003641122.1\|2556612_2556864_-	hypothetical protein	NA	NA	NA	NA
WP_015379917.1\|2556921_2557077_+	hypothetical protein	NA	NA	NA	NA
WP_181814074.1\|2557399_2558134_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.5e-35	40.0
WP_003641126.1\|2558154_2558991_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_003644017.1\|2558990_2559632_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003641128.1\|2559648_2560302_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_016511843.1\|2560502_2561423_+\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.6e-23	31.0
WP_060677722.1\|2561491_2562370_-	TSUP family transporter	NA	NA	NA	NA
WP_003644023.1\|2562643_2563084_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_046038513.1\|2563354_2564686_+	amino acid permease	NA	NA	NA	NA
WP_003688751.1\|2565363_2565651_+\|transposase	transposase	NA	NA	NA	NA
WP_010011610.1\|2565674_2566553_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.0e-42	36.4
WP_060677723.1\|2566907_2568359_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_003644019.1\|2568386_2569229_-	PRD domain-containing protein	NA	NA	NA	NA
WP_060677724.1\|2569254_2569746_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_016511843.1\|2569929_2570850_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.6e-23	31.0
WP_060677725.1\|2571024_2571477_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003645778.1\|2571476_2572631_+	MFS transporter	NA	NA	NA	NA
WP_016511843.1\|2572784_2573705_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.6e-23	31.0

DBSCAN-SWA_14

2594786 : 2637982

Staphylococcus_prophage(25.0%)

tRNA,transposase,protease,integrase

attL 2602177:2602236|attR 2630389:2631423

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060677732.1\|2594786_2595707_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.6e-23	31.0
WP_060677733.1\|2595774_2596167_-	hypothetical protein	NA	NA	NA	NA
WP_046040560.1\|2596409_2597108_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003645769.1\|2597327_2597672_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060677734.1\|2597803_2599102_-	MFS transporter	NA	NA	NA	NA
WP_060677735.1\|2599375_2601880_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
2602177:2602236	attL	NA	NA	NA	NA
WP_011373852.1\|2602275_2603196_+\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_011101208.1\|2603401_2603785_+	hypothetical protein	NA	NA	NA	NA
WP_060677736.1\|2603774_2605622_+	acetyltransferase	A0A1R3Y5Q6	Salmonella_virus	5.8e-20	23.3
WP_003641172.1\|2605862_2606117_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_003641173.1\|2606128_2606674_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA
WP_003641174.1\|2606686_2606869_+	hypothetical protein	NA	NA	NA	NA
WP_003644046.1\|2606883_2607306_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_003641176.1\|2607366_2607807_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_060677737.1\|2608010_2608811_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_046038581.1\|2608941_2609952_+	DUF4767 domain-containing protein	NA	NA	NA	NA
WP_060677738.1\|2610313_2610646_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_060677739.1\|2611504_2614039_+	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	1.6e-68	27.4
WP_080376267.1\|2614266_2617140_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_060677741.1\|2617282_2618212_-\|transposase	IS30-like element ISLpl1 family transposase	NA	NA	NA	NA
WP_060677742.1\|2619783_2620329_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_060677743.1\|2620422_2621352_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_080376302.1\|2621387_2621984_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_060677745.1\|2622135_2623053_+\|integrase	site-specific integrase	A8ATM2	Listeria_phage	1.0e-73	44.3
WP_080376269.1\|2623063_2623624_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_160316028.1\|2623748_2624222_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_060677746.1\|2624525_2625056_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_003645748.1\|2628746_2628866_+	putative metal homeostasis protein	NA	NA	NA	NA
WP_046038598.1\|2628953_2629448_+	kinase	NA	NA	NA	NA
WP_046038599.1\|2629516_2630269_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011373852.1\|2630487_2631408_+\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_060677747.1\|2631417_2631957_+	helix-turn-helix domain-containing protein	X2CXD8	Lactobacillus_phage	1.2e-05	48.3
2630389:2631423	attR	NA	NA	NA	NA
WP_046038600.1\|2632027_2632954_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003641193.1\|2635304_2635778_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_060677748.1\|2635886_2636516_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_060677749.1\|2636686_2637982_-\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	1.2e-56	31.0

DBSCAN-SWA_15

2792293 : 2829537

Bacillus_phage(18.18%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003641341.1\|2792293_2792614_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_060677790.1\|2792613_2794077_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_060677791.1\|2794076_2795501_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_003641344.1\|2795605_2796628_+	diacylglycerol kinase	A0A1V0SBJ0	Catovirus	2.6e-17	26.5
WP_011101269.1\|2796961_2798335_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	3.2e-124	50.0
WP_003641346.1\|2798788_2799367_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011373852.1\|2799499_2800420_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_060677792.1\|2800670_2803010_+	cation-translocating P-type ATPase	M1HI01	Paramecium_bursaria_Chlorella_virus	2.1e-38	24.8
WP_060677793.1\|2803259_2804576_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_060677794.1\|2804568_2805453_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003644133.1\|2805577_2806456_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_003641351.1\|2806480_2807257_+	lysozyme	A0A141HSE6	Bacillus_phage	2.6e-06	31.1
WP_060677795.1\|2807288_2808977_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	3.6e-93	41.5
WP_003641352.1\|2809176_2809542_-	DUF4828 domain-containing protein	NA	NA	NA	NA
WP_003638174.1\|2809885_2810086_+	cold-shock protein	Q9AZD3	Lactococcus_phage	3.1e-20	71.4
WP_045352531.1\|2810272_2811280_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_003643301.1\|2812908_2813349_-	universal stress protein	NA	NA	NA	NA
WP_060677796.1\|2813482_2814796_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_016511261.1\|2814788_2815655_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_016511262.1\|2815804_2816005_-	hypothetical protein	NA	NA	NA	NA
WP_003643305.1\|2816204_2816645_+	hypothetical protein	NA	NA	NA	NA
WP_003646269.1\|2817077_2817641_+	hypothetical protein	NA	NA	NA	NA
WP_187329197.1\|2817724_2819080_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_060677798.1\|2819338_2820466_+	serine hydrolase	NA	NA	NA	NA
WP_003646267.1\|2820702_2821821_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A0N9R0B2	Chrysochromulina_ericina_virus	2.7e-20	31.2
WP_060677799.1\|2822179_2823109_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_003643315.1\|2823298_2824015_+	aquaporin family protein	A0A1J0F964	Only_Syngen_Nebraska_virus	5.6e-19	32.7
WP_060677801.1\|2825010_2825706_+	glycosyltransferase	NA	NA	NA	NA
WP_003688751.1\|2825753_2826041_+\|transposase	transposase	NA	NA	NA	NA
WP_060677802.1\|2826064_2826943_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	4.4e-42	36.4
WP_060677803.1\|2826995_2827538_+	glycosyltransferase	NA	NA	NA	NA
WP_060677389.1\|2828205_2829126_+\|transposase	IS30 family transposase	H7BW61	unidentified_phage	3.7e-23	30.7
WP_080376275.1\|2829327_2829537_+\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_16

2950225 : 3061944

109

Lactobacillus_phage(77.05%)

tRNA,terminase,capsid,head,holin,portal,tail,protease,transposase,integrase

attL 2954971:2954989|attR 2998645:2998663

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015473476.1\|2950225_2951155_+\|transposase	IS30-like element ISLpl1 family transposase	NA	NA	NA	NA
WP_060677844.1\|2951212_2951725_-	hypothetical protein	NA	NA	NA	NA
WP_003643147.1\|2951839_2952127_+	hypothetical protein	NA	NA	NA	NA
WP_060677845.1\|2952191_2954459_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.0e-118	31.4
2954971:2954989	attL	NA	NA	NA	NA
WP_060677846.1\|2955105_2956242_-\|integrase	site-specific integrase	E9LUS1	Lactobacillus_phage	2.7e-209	97.4
WP_144425354.1\|2956645_2957140_-	hypothetical protein	U5U717	Lactobacillus_phage	1.8e-24	41.7
WP_056988408.1\|2957163_2957394_+	hypothetical protein	U5U783	Lactobacillus_phage	5.4e-08	47.5
WP_060677849.1\|2957465_2957780_-	hypothetical protein	NA	NA	NA	NA
WP_060677850.1\|2957943_2958258_-	hypothetical protein	E9LUS3	Lactobacillus_phage	2.3e-49	98.1
WP_060677851.1\|2958250_2958664_-	hypothetical protein	E9LUS4	Lactobacillus_phage	5.6e-72	98.5
WP_063489717.1\|2958787_2959453_-	LexA family transcriptional regulator	D7RWF2	Brochothrix_phage	9.3e-53	48.2
WP_045351970.1\|2959608_2959833_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060677852.1\|2959847_2960618_+	phage antirepressor KilAC domain-containing protein	E9LUT0	Lactobacillus_phage	2.2e-58	96.5
WP_060677853.1\|2960755_2961040_-	hypothetical protein	A0A2H4JEH2	uncultured_Caudovirales_phage	3.9e-24	54.9
WP_060677854.1\|2961783_2962113_+	DUF771 domain-containing protein	E9LUT3	Lactobacillus_phage	2.9e-47	80.7
WP_060677855.1\|2962201_2962441_+	hypothetical protein	E9LUT6	Lactobacillus_phage	5.3e-35	84.7
WP_187329198.1\|2962452_2962617_+	hypothetical protein	E9LUT8	Lactobacillus_phage	3.6e-14	75.0
WP_167803054.1\|2962619_2962790_+	hypothetical protein	NA	NA	NA	NA
WP_060677856.1\|2962790_2963096_+	hypothetical protein	NA	NA	NA	NA
WP_003638309.1\|2963115_2963808_+	hypothetical protein	E9LUU3	Lactobacillus_phage	5.0e-118	89.1
WP_060677857.1\|2963857_2964664_+	hypothetical protein	A0A0S2MYA8	Enterococcus_phage	8.4e-48	37.9
WP_044431016.1\|2964663_2965449_+	ATP-binding protein	E9LUN6	Lactobacillus_phage	1.4e-132	91.6
WP_160316029.1\|2965683_2966331_+	hypothetical protein	B3FK10	Pseudomonas_phage	1.2e-17	37.4
WP_060677859.1\|2966478_2966787_+	hypothetical protein	E9LUN7	Lactobacillus_phage	2.7e-47	91.2
WP_144425355.1\|2966779_2966929_+	hypothetical protein	A0A2P0ZLB5	Lactobacillus_phage	3.9e-12	84.8
WP_144425356.1\|2966932_2967253_+	hypothetical protein	NA	NA	NA	NA
WP_080376283.1\|2967313_2968432_+	DNA cytosine methyltransferase	A0A1I9KKE7	Lactobacillus_phage	1.2e-129	63.3
WP_060677861.1\|2968492_2968870_+	hypothetical protein	A0A2P0ZKS9	Lactobacillus_phage	1.1e-10	35.0
WP_033609727.1\|2969161_2969632_+	hypothetical protein	B4XYT9	Lactobacillus_phage	1.9e-15	40.0
WP_060677862.1\|2970225_2970498_+	hypothetical protein	NA	NA	NA	NA
WP_144425357.1\|2970920_2971103_+	hypothetical protein	NA	NA	NA	NA
WP_060677865.1\|2971086_2971233_+	hypothetical protein	E9LUP6	Lactobacillus_phage	8.3e-15	76.8
WP_187329208.1\|2971243_2971723_+	HNH endonuclease	E9LUP7	Lactobacillus_phage	3.4e-81	91.7
WP_060677954.1\|2971869_2972121_+	hypothetical protein	NA	NA	NA	NA
WP_060677867.1\|2972310_2972769_+\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	6.1e-80	97.4
WP_060677868.1\|2972771_2974670_+\|terminase	terminase large subunit	E9LUP9	Lactobacillus_phage	0.0e+00	96.0
WP_060677869.1\|2974659_2974854_+	DUF1056 family protein	E9LUQ0	Lactobacillus_phage	2.2e-26	95.3
WP_060677870.1\|2974856_2976050_+\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	5.8e-223	98.5
WP_060677871.1\|2976027_2976786_+\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	2.4e-121	91.3
WP_060677872.1\|2976785_2978006_+\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	1.1e-203	90.1
WP_060677873.1\|2978078_2978411_+\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	6.1e-45	84.5
WP_060677874.1\|2978400_2978748_+\|head	phage head closure protein	A0A2P0ZLF0	Lactobacillus_phage	2.7e-43	72.8
WP_060677875.1\|2978750_2979158_+	HK97 gp10 family phage protein	A0A2P0ZLE6	Lactobacillus_phage	5.0e-65	91.7
WP_060677876.1\|2979157_2979538_+	DUF806 family protein	A0A2P0ZLF4	Lactobacillus_phage	1.8e-56	87.3
WP_060677877.1\|2979551_2980208_+\|tail	phage tail protein	A0A2P0ZLH1	Lactobacillus_phage	1.1e-101	88.9
WP_060677878.1\|2980283_2980658_+\|tail	phage tail assembly chaperone	A0A2P0ZLH4	Lactobacillus_phage	9.2e-58	95.2
WP_015640500.1\|2980702_2980888_+	hypothetical protein	NA	NA	NA	NA
WP_060677879.1\|2980919_2985629_+	C40 family peptidase	A0A2P0ZLG0	Lactobacillus_phage	0.0e+00	73.9
WP_060677880.1\|2985705_2987475_+\|tail	phage tail family protein	E9LUR2	Lactobacillus_phage	0.0e+00	88.2
WP_060677881.1\|2987540_2989898_+\|tail	phage tail protein	E9LUR3	Lactobacillus_phage	0.0e+00	92.5
WP_060677883.1\|2994643_2994886_+	hypothetical protein	A0A1S5RCP9	Lactobacillus_phage	2.8e-31	85.0
WP_187329199.1\|2994900_2995062_+	hypothetical protein	A0A2P0ZLG1	Lactobacillus_phage	2.1e-19	96.2
WP_060677884.1\|2995045_2996041_+	hypothetical protein	A0A2P0ZLF6	Lactobacillus_phage	1.4e-60	85.0
WP_060677885.1\|2996037_2996250_+	hypothetical protein	A0A0A1ENR9	Lactobacillus_phage	9.6e-20	85.2
WP_060677886.1\|2996261_2997419_+	LysM peptidoglycan-binding domain-containing protein	E9LUR8	Lactobacillus_phage	3.7e-190	86.4
WP_015825361.1\|2997418_2997682_+	hemolysin XhlA family protein	E9LUR9	Lactobacillus_phage	7.4e-38	98.9
WP_060677887.1\|2997693_2998074_+\|holin	holin	A0A2H4PBB2	Lactobacillus_phage	6.3e-14	83.3
WP_011101374.1\|2998983_2999409_-	lipoprotein	NA	NA	NA	NA
2998645:2998663	attR	NA	NA	NA	NA
WP_060677888.1\|2999573_3000587_-	hypothetical protein	NA	NA	NA	NA
WP_060677889.1\|3000692_3001214_+	GtrA family protein	NA	NA	NA	NA
WP_080376285.1\|3001313_3001673_-	YisL family protein	NA	NA	NA	NA
WP_011101376.1\|3001745_3003602_-	bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_060677891.1\|3003615_3005922_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_060677892.1\|3006810_3008448_+	sulfotransferase family protein	NA	NA	NA	NA
WP_060677893.1\|3008425_3009601_+	sulfate adenylyltransferase	A0A2P1ELS9	Moumouvirus	5.0e-49	31.7
WP_003645243.1\|3009603_3010227_+	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	4.8e-27	40.6
WP_060677894.1\|3010216_3011173_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_060677895.1\|3011394_3013134_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA
WP_060677896.1\|3013642_3015418_+	SLC13 family permease	NA	NA	NA	NA
WP_003643131.1\|3015692_3017084_+	MATE family efflux transporter	NA	NA	NA	NA
WP_003643130.1\|3017210_3017456_+	hypothetical protein	NA	NA	NA	NA
WP_060677897.1\|3017844_3018291_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003643128.1\|3018562_3020251_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	1.2e-75	32.9
WP_003643127.1\|3020456_3020933_-	hypothetical protein	NA	NA	NA	NA
WP_060677898.1\|3021202_3023197_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	3.1e-35	40.2
WP_003643125.1\|3023880_3024537_+	hypothetical protein	NA	NA	NA	NA
WP_060677899.1\|3024671_3027227_+	PRD domain-containing protein	NA	NA	NA	NA
WP_003643123.1\|3027439_3027910_-	DUF3284 domain-containing protein	NA	NA	NA	NA
WP_003643122.1\|3028068_3028407_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_060677900.1\|3028403_3028703_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_060677901.1\|3028736_3030065_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_060677902.1\|3030067_3031540_+	family 1 glycosylhydrolase	NA	NA	NA	NA
WP_033608579.1\|3031551_3032736_-	MFS transporter	NA	NA	NA	NA
WP_011101393.1\|3032735_3033347_-	L,D-transpeptidase	NA	NA	NA	NA
WP_003644263.1\|3033617_3033860_-	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA
WP_060677903.1\|3033962_3035414_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_060677904.1\|3035648_3036257_+	LysE family transporter	NA	NA	NA	NA
WP_013355465.1\|3036322_3037444_+	aminotransferase	NA	NA	NA	NA
WP_011373852.1\|3037544_3038465_+\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_060677905.1\|3038657_3039119_+	arginine repressor	NA	NA	NA	NA
WP_060677906.1\|3039612_3041742_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_003643106.1\|3041832_3042177_+	YlbF family regulator	NA	NA	NA	NA
WP_060677907.1\|3042246_3043467_+	DNA repair exonuclease	NA	NA	NA	NA
WP_060677908.1\|3043453_3045934_+	AAA family ATPase	NA	NA	NA	NA
WP_060677909.1\|3045944_3046925_+	HD domain-containing protein	NA	NA	NA	NA
WP_060677910.1\|3047080_3048001_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	4.8e-23	30.7
WP_003644269.1\|3048282_3049521_+	hypothetical protein	A0A2P0ZL72	Lactobacillus_phage	5.7e-221	99.7
WP_060677911.1\|3049611_3050583_-	peptidase S41	A0A2P0ZL68	Lactobacillus_phage	6.5e-180	97.5
WP_003643099.1\|3050768_3051716_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	2.7e-178	100.0
WP_003643097.1\|3052059_3052674_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	6.3e-112	100.0
WP_060677912.1\|3052676_3055115_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	0.0e+00	99.8
WP_021356349.1\|3055202_3055763_+	hypothetical protein	A0A2P0ZL75	Lactobacillus_phage	1.0e-100	99.5
WP_060677913.1\|3055833_3056274_-	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	9.8e-75	95.2
WP_022638020.1\|3056369_3056507_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_060677914.1\|3056664_3058032_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.6e-25	31.4
WP_144425333.1\|3058261_3059061_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_060676905.1\|3059090_3059600_-	response regulator transcription factor	W8CYM9	Bacillus_phage	5.7e-18	36.0
WP_013355473.1\|3060309_3060975_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_021356804.1\|3060999_3061944_+	glycosyltransferase family 2 protein	V5USA4	Oenococcus_phage	6.7e-73	45.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012657

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP012653

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP012650

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection