CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009456	Yersinia enterocolitica strain FORC_002 chromosome, complete genome	0 crisprs	DEDDh,WYL,DinG,RT,cas3,csa3	0	0	9	0
NZ_CP009457	Yersinia enterocolitica strain FORC_002 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1942734 : 2025804

101

Erwinia_phage(19.18%)

portal,terminase,lysis,capsid,tRNA,tail,plate,transposase,integrase,head

attL 1975689:1975748|attR 2025108:2025232

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071843381.1\|1942734_1942950_-	DNA-binding transcriptional regulator	A0A0F7LDQ9	Escherichia_phage	4.8e-19	55.6
WP_046695149.1\|1943041_1944208_-	phage late control D family protein	A0A218M4J7	Erwinia_phage	6.7e-139	66.1
WP_046695148.1\|1944204_1944690_-\|tail	phage tail protein	S4TUC3	Salmonella_phage	2.0e-49	61.0
WP_046695147.1\|1944692_1947101_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	1.5e-132	41.0
WP_004875948.1\|1947093_1947216_-\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	2.0e-09	71.1
WP_046695146.1\|1947248_1947560_-\|tail	phage tail assembly protein	F1BUU0	Erwinia_phage	9.4e-24	61.1
WP_019079139.1\|1947612_1948128_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	8.8e-67	71.9
WP_046695145.1\|1948141_1949311_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	1.2e-183	79.9
WP_046695144.1\|1949436_1949922_-\|tail	phage tail protein	F1BUP0	Erwinia_phage	9.5e-31	43.7
WP_046695143.1\|1949925_1951089_-\|tail	variable tail fiber protein	A0A0M3ULH6	Salmonella_phage	1.6e-79	55.2
WP_046695142.1\|1951085_1951694_-\|tail	phage tail protein I	F1BUP2	Erwinia_phage	4.6e-91	79.1
WP_046695141.1\|1951686_1952595_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	2.1e-124	79.5
WP_046695140.1\|1952599_1952950_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	1.2e-38	67.2
WP_046695139.1\|1952946_1953588_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	8.6e-72	64.5
WP_046695138.1\|1953671_1954403_-	hypothetical protein	NA	NA	NA	NA
WP_046695137.1\|1954465_1954915_-	phage virion morphogenesis protein	O80313	Escherichia_phage	2.1e-48	65.1
WP_046695136.1\|1954911_1955367_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	2.9e-45	62.0
WP_046695135.1\|1955462_1955879_-\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	5.0e-28	51.8
WP_046695134.1\|1955880_1956387_-	lysozyme	A0A218M4K3	Erwinia_phage	1.5e-55	62.5
WP_046695133.1\|1956370_1956580_-	hypothetical protein	NA	NA	NA	NA
WP_046695132.1\|1956582_1956786_-\|tail	tail protein X	E5G6M9	Salmonella_phage	4.5e-19	64.2
WP_046695131.1\|1956785_1957259_-\|head	head completion/stabilization protein	M1SNN6	Escherichia_phage	1.7e-40	57.4
WP_046695130.1\|1957358_1958018_-\|terminase	terminase endonuclease subunit	F1BUQ7	Erwinia_phage	2.5e-82	70.3
WP_046695129.1\|1958021_1959251_-\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	8.9e-150	73.5
WP_046695128.1\|1959327_1960182_-\|capsid	GPO family capsid scaffolding protein	Q01088	Escherichia_phage	4.5e-92	61.8
WP_046695127.1\|1960332_1962105_+\|terminase	terminase ATPase subunit family protein	F1BUR2	Erwinia_phage	4.5e-288	81.3
WP_014609181.1\|1962101_1963139_+\|portal	phage portal protein	F1BUR7	Erwinia_phage	3.0e-159	77.8
WP_046695699.1\|1963251_1963530_+	hypothetical protein	NA	NA	NA	NA
WP_046695125.1\|1963936_1964131_-	hypothetical protein	NA	NA	NA	NA
WP_046695124.1\|1964268_1964628_-	hypothetical protein	H9C172	Pectobacterium_phage	1.4e-18	43.4
WP_046695123.1\|1964647_1966927_-	replication endonuclease	Q858T4	Yersinia_virus	4.5e-240	57.1
WP_020282762.1\|1966923_1967187_-	DUF5405 family protein	NA	NA	NA	NA
WP_046695122.1\|1967197_1967503_-	DUF5405 family protein	NA	NA	NA	NA
WP_046695121.1\|1967502_1967775_-	DUF2732 family protein	A0A1S6L021	Salmonella_phage	2.0e-06	45.8
WP_046695120.1\|1967840_1968152_-	hypothetical protein	NA	NA	NA	NA
WP_005163725.1\|1968163_1968349_-	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_046695119.1\|1968358_1968868_-	hypothetical protein	E5G6L3	Salmonella_phage	2.1e-44	52.4
WP_080343458.1\|1968922_1969120_-	DNA-binding protein	Q1I116	Pasteurella_virus	2.8e-05	39.3
WP_046695118.1\|1969232_1969802_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	5.4e-25	38.0
WP_046695117.1\|1970123_1971158_+\|integrase	tyrosine-type recombinase/integrase	Q1I119	Pasteurella_virus	1.3e-117	62.0
WP_046695116.1\|1971275_1972268_-	hypothetical protein	NA	NA	NA	NA
WP_046695115.1\|1972740_1974723_+	ATP-binding domain-containing protein	NA	NA	NA	NA
WP_046695114.1\|1974719_1975358_+	hypothetical protein	NA	NA	NA	NA
1975689:1975748	attL	NA	NA	NA	NA
WP_046695113.1\|1975883_1976900_-\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.8e-135	67.5
WP_046051137.1\|1976889_1977126_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	2.9e-09	43.5
WP_019082908.1\|1977338_1977521_-	hypothetical protein	NA	NA	NA	NA
WP_046051135.1\|1977566_1978067_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	4.5e-60	74.8
WP_046695112.1\|1978063_1980262_-	hypothetical protein	H9C157	Pectobacterium_phage	5.9e-128	38.2
WP_046051133.1\|1980317_1980653_-	hypothetical protein	NA	NA	NA	NA
WP_154235942.1\|1980963_1981119_-	hypothetical protein	NA	NA	NA	NA
WP_046052037.1\|1981359_1982010_-	LexA family transcriptional regulator	H9C160	Pectobacterium_phage	1.5e-87	71.3
WP_046051132.1\|1982114_1982300_+	regulatory protein	H9C161	Pectobacterium_phage	2.1e-18	68.9
WP_046051131.1\|1982360_1982825_+\|tRNA	tRNA-(guanine-N1)-methyltransferase	H9C162	Pectobacterium_phage	1.8e-34	56.1
WP_046695111.1\|1982841_1983066_+	hypothetical protein	H9C163	Pectobacterium_phage	9.8e-23	66.2
WP_046051129.1\|1983068_1984043_+	helix-turn-helix domain-containing protein	A0A1W6JP36	Morganella_phage	4.3e-38	62.1
WP_046695110.1\|1984039_1985401_+	replicative DNA helicase	K7P852	Enterobacteria_phage	1.3e-106	44.4
WP_046051127.1\|1985445_1985826_+	hypothetical protein	NA	NA	NA	NA
WP_046051126.1\|1985830_1986082_+	hypothetical protein	NA	NA	NA	NA
WP_046051125.1\|1986078_1986585_+	hypothetical protein	L0ASX3	Klebsiella_phage	3.2e-05	37.2
WP_046051124.1\|1986581_1988747_+	DNA methyltransferase	H9C171	Pectobacterium_phage	4.2e-219	51.1
WP_046051123.1\|1988743_1989097_+	hypothetical protein	H9C172	Pectobacterium_phage	9.0e-31	59.0
WP_046051122.1\|1989139_1989403_+	hypothetical protein	NA	NA	NA	NA
WP_046051121.1\|1989506_1990100_+	DUF1367 family protein	H9C173	Pectobacterium_phage	1.7e-61	55.8
WP_046051120.1\|1990108_1990393_+	DUF1364 domain-containing protein	H9C174	Pectobacterium_phage	2.0e-36	77.7
WP_046051119.1\|1990389_1990962_+	DUF1133 family protein	NA	NA	NA	NA
WP_046051118.1\|1991401_1991668_+	hypothetical protein	Q7Y3V4	Yersinia_phage	7.0e-36	78.4
WP_046051117.1\|1991667_1992201_+	lysozyme	H6WRZ4	Salmonella_phage	1.3e-68	67.8
WP_046695109.1\|1992193_1992526_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_046051115.1\|1993229_1993832_+	hypothetical protein	G8C7P2	Escherichia_phage	7.1e-68	73.0
WP_046051114.1\|1993831_1995304_+\|terminase	terminase	A0A1W6JNY3	Morganella_phage	2.8e-251	82.9
WP_046695108.1\|1995314_1996772_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	4.4e-164	66.7
WP_080343489.1\|1996809_1997691_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	4.2e-109	65.1
WP_046695106.1\|1997748_1997940_+	hypothetical protein	NA	NA	NA	NA
WP_046695105.1\|1998013_1999201_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.3e-94	48.3
WP_046695104.1\|1999204_1999645_+	hypothetical protein	F1C5E0	Cronobacter_phage	1.9e-41	63.0
WP_046695103.1\|1999655_2000732_+	hypothetical protein	F1C5E1	Cronobacter_phage	2.4e-159	76.0
WP_046051109.1\|2000741_2001107_+	hypothetical protein	NA	NA	NA	NA
WP_046051108.1\|2001109_2001481_+	hypothetical protein	F1C5E2	Cronobacter_phage	1.5e-47	77.5
WP_154235943.1\|2001666_2001861_+	hypothetical protein	NA	NA	NA	NA
WP_046051107.1\|2001790_2002141_+	hypothetical protein	G0ZNE2	Cronobacter_phage	3.3e-25	50.9
WP_046051106.1\|2002142_2002511_+	hypothetical protein	F1C5E3	Cronobacter_phage	1.2e-41	68.0
WP_046051105.1\|2002507_2002891_+	hypothetical protein	G0ZNE4	Cronobacter_phage	9.1e-45	66.1
WP_046051104.1\|2002915_2003665_+	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	4.0e-60	54.0
WP_046051103.1\|2003824_2004172_+	TonB family protein	NA	NA	NA	NA
WP_011816460.1\|2004383_2004701_+	hypothetical protein	NA	NA	NA	NA
WP_046051102.1\|2005110_2005461_+	hypothetical protein	NA	NA	NA	NA
WP_046695101.1\|2006382_2007072_+	hypothetical protein	A0A1W6JNX2	Morganella_phage	5.3e-51	46.3
WP_046695100.1\|2007064_2010433_+	tape measure protein	Q5G8W8	Enterobacteria_phage	4.7e-193	51.1
WP_046695099.1\|2010445_2010799_+\|tail	phage tail protein	I6RSL7	Salmonella_phage	1.0e-45	75.2
WP_046695098.1\|2010812_2011367_-	hypothetical protein	NA	NA	NA	NA
WP_046695097.1\|2011494_2012199_+\|tail	phage minor tail protein L	H6WRW1	Salmonella_phage	1.0e-105	77.4
WP_080343457.1\|2012198_2012924_+	C40 family peptidase	Q5G8W2	Enterobacteria_phage	1.3e-100	67.9
WP_020424083.1\|2012866_2013394_+\|tail	tail assembly protein	H6WRW3	Salmonella_phage	6.3e-44	56.3
WP_046695095.1\|2013403_2016544_+	host specificity protein J	Q5G8W0	Enterobacteria_phage	0.0e+00	67.0
WP_019079554.1\|2016546_2016813_+	hypothetical protein	NA	NA	NA	NA
WP_046051099.1\|2016812_2017517_+	hypothetical protein	A0A2D2W721	Pectobacterium_phage	6.9e-06	25.2
WP_046051098.1\|2017542_2019354_+	hypothetical protein	A0A1L7DQU7	Yersinia_phage	2.5e-39	43.8
WP_072083000.1\|2019362_2019803_+\|tail	phage tail protein	Q7Y3Y8	Yersinia_phage	1.1e-20	53.0
WP_046695094.1\|2019861_2022921_-	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	1.2e-105	48.4
WP_019082965.1\|2023398_2024928_+	recombinase family protein	NA	NA	NA	NA
WP_019083256.1\|2025495_2025804_+\|transposase	transposase	Q716C1	Shigella_phage	3.4e-18	45.0
2025108:2025232	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2173229 : 2181061

Tupanvirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005170086.1\|2173229_2175158_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	7.4e-127	37.1
WP_011816226.1\|2175161_2175713_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.4e-16	33.7
WP_004713020.1\|2175809_2176007_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_004393357.1\|2176044_2176401_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_152414234.1\|2176469_2176517_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_019083037.1\|2176865_2177849_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	9.9e-35	38.0
WP_046695044.1\|2177863_2180251_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.1e-07	27.8
WP_002211830.1\|2180255_2180552_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	4.2e-13	40.0
WP_032908420.1\|2180764_2181061_-	NINE protein	M4ZS56	Bacillus_phage	8.1e-17	68.8

DBSCAN-SWA_3

2632992 : 2639116

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046050799.1\|2632992_2633475_-	lysozyme	A0A2H4JCH1	uncultured_Caudovirales_phage	3.8e-56	65.0
WP_005161370.1\|2633476_2633653_-	hypothetical protein	B6SD15	Bacteriophage	2.2e-14	60.7
WP_005170265.1\|2633879_2634056_+	GhoT/OrtT family toxin	NA	NA	NA	NA
WP_032901786.1\|2634231_2634648_-	antitermination protein Q	K7PGW2	Enterobacterial_phage	3.1e-38	63.0
WP_005161392.1\|2635075_2635258_-	hypothetical protein	NA	NA	NA	NA
WP_046050798.1\|2635401_2636046_-	CatB-related O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	7.5e-15	29.5
WP_026018244.1\|2636446_2636866_+	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	2.8e-15	32.8
WP_046050796.1\|2637376_2639116_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.3e-37	25.8

DBSCAN-SWA_4

2648393 : 2662007

Pectobacterium_phage(71.43%)

tail,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042562584.1\|2648393_2649554_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	7.1e-40	37.6
WP_052750730.1\|2649862_2651827_+	acyltransferase	A0A193GZ69	Enterobacter_phage	1.3e-65	34.1
WP_019079689.1\|2651912_2652383_-\|tail	phage tail protein	F1BUP0	Erwinia_phage	1.4e-39	48.1
WP_046694915.1\|2652396_2653500_-	hypothetical protein	E5G6P0	Salmonella_phage	3.1e-08	54.4
WP_019079691.1\|2653513_2654158_-	DUF2612 domain-containing protein	H9C1B4	Pectobacterium_phage	5.0e-43	49.0
WP_046694914.1\|2654150_2655350_-\|plate	phage baseplate protein	H9C1B3	Pectobacterium_phage	7.3e-149	66.0
WP_025378609.1\|2655349_2655700_-	hypothetical protein	H9C1B2	Pectobacterium_phage	2.2e-37	65.5
WP_046694913.1\|2655772_2656450_-	hypothetical protein	H9C1B1	Pectobacterium_phage	1.8e-67	57.1
WP_046694912.1\|2656457_2657351_-	hypothetical protein	H9C1B0	Pectobacterium_phage	6.0e-79	46.4
WP_046694911.1\|2657343_2657634_-	hypothetical protein	H9C1A9	Pectobacterium_phage	2.1e-25	58.3
WP_019079697.1\|2657633_2658302_-	hypothetical protein	H9C1A8	Pectobacterium_phage	6.7e-35	48.9
WP_046694910.1\|2658301_2659966_-	glycoside hydrolase family 104 protein	H9C1A7	Pectobacterium_phage	9.6e-139	49.7
WP_102895904.1\|2660083_2660380_-	hypothetical protein	NA	NA	NA	NA
WP_046694908.1\|2660369_2660948_-	hypothetical protein	NA	NA	NA	NA
WP_019079702.1\|2661210_2661600_-	hypothetical protein	H9C1A4	Pectobacterium_phage	1.5e-34	60.5
WP_019079703.1\|2661602_2662007_-	hypothetical protein	H9C1A3	Pectobacterium_phage	4.6e-55	80.6

DBSCAN-SWA_5

2731152 : 2738270

Cronobacter_phage(33.33%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046694896.1\|2731152_2732430_-	bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	A0A0B5JD48	Pandoravirus	3.4e-19	29.8
WP_019083380.1\|2732936_2734001_+	linear amide C-N hydrolase	M1HS66	Paramecium_bursaria_Chlorella_virus	2.6e-20	27.3
WP_019083381.1\|2734326_2735163_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019079757.1\|2735242_2735464_+\|holin	holin	M9NZI9	Enterobacteria_phage	2.3e-16	66.2
WP_080343450.1\|2735435_2735936_+	lysozyme	A0A2H4JCH1	uncultured_Caudovirales_phage	1.8e-48	57.8
WP_046050765.1\|2735911_2736250_+	hypothetical protein	NA	NA	NA	NA
WP_046050764.1\|2736645_2737002_+	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	3.8e-21	44.8
WP_046050763.1\|2737001_2738270_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	1.5e-155	63.5

DBSCAN-SWA_6

3816704 : 3828331

Morganella_phage(25.0%)

tRNA,integrase

attL 3823773:3823786|attR 3826992:3827005

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046694593.1\|3816704_3819479_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.2e-292	57.4
WP_046695654.1\|3819471_3819825_-	hypothetical protein	A0A1B5FPL8	Escherichia_phage	7.9e-27	51.4
WP_046694592.1\|3819838_3820369_-	hypothetical protein	NA	NA	NA	NA
WP_050322082.1\|3820352_3820985_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	7.5e-36	41.7
WP_046694591.1\|3820981_3821200_-	hypothetical protein	NA	NA	NA	NA
WP_046694590.1\|3821189_3821396_-	hypothetical protein	NA	NA	NA	NA
WP_046694589.1\|3821388_3821589_-	hypothetical protein	A0A286S1P8	Klebsiella_phage	1.8e-07	51.7
WP_046694588.1\|3821578_3821764_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_046694587.1\|3821972_3822293_+	hypothetical protein	NA	NA	NA	NA
WP_046694586.1\|3822548_3823391_-	antA/AntB antirepressor family protein	A0A0P0ZCA2	Stx2-converting_phage	5.9e-20	42.9
WP_154237414.1\|3823405_3823825_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	1.0e-25	54.2
3823773:3823786	attL	NA	NA	NA	NA
WP_038400474.1\|3823824_3824022_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_046694585.1\|3824242_3824698_-	hypothetical protein	NA	NA	NA	NA
WP_046694584.1\|3824716_3825046_-	hypothetical protein	NA	NA	NA	NA
WP_046694583.1\|3825190_3826405_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.6e-143	61.4
WP_019078980.1\|3826813_3828331_-\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	6.6e-86	37.4
3826992:3827005	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4178261 : 4295090

105

uncultured_Caudovirales_phage(30.0%)

portal,terminase,holin,capsid,tRNA,tail,protease,integrase,head

attL 4191983:4192000|attR 4273762:4273779

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019080059.1\|4178261_4178996_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_019080060.1\|4179084_4180746_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_046694481.1\|4180844_4182260_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_046050170.1\|4182474_4183422_-	HTH-type transcriptional regulator TreR	NA	NA	NA	NA
WP_046694480.1\|4183928_4186649_+	magnesium-translocating P-type ATPase	M1HN09	Paramecium_bursaria_Chlorella_virus	2.0e-40	24.1
WP_005162526.1\|4186728_4187007_+	plasmid maintenance system killer protein	A0A2L1IV28	Escherichia_phage	6.0e-38	77.2
WP_005162529.1\|4187006_4187312_+	HigA family addiction module antidote protein	A0A2L1IV52	Escherichia_phage	3.3e-29	65.3
WP_046695642.1\|4187384_4189283_-	BglG family transcription antiterminator	NA	NA	NA	NA
WP_046694479.1\|4189384_4190608_-	lactonase family protein	NA	NA	NA	NA
WP_005174290.1\|4190717_4191458_-	KDGP aldolase family protein	NA	NA	NA	NA
WP_019080067.1\|4191461_4192574_-	DgaE family pyridoxal phosphate-dependent ammonia lyase	NA	NA	NA	NA
4191983:4192000	attL	NA	NA	NA	NA
WP_019080068.1\|4192557_4193727_-	amidohydrolase/deacetylase family metallohydrolase	NA	NA	NA	NA
WP_005174295.1\|4193927_4194578_-	DUF4310 family protein	NA	NA	NA	NA
WP_004392358.1\|4194599_4195376_-	DUF4311 domain-containing protein	NA	NA	NA	NA
WP_019082217.1\|4195389_4195686_-	DUF4312 family protein	NA	NA	NA	NA
WP_004392359.1\|4195685_4196051_-	hypothetical protein	NA	NA	NA	NA
WP_005174305.1\|4196074_4196419_-	glycine dehydrogenase	NA	NA	NA	NA
WP_005174306.1\|4196824_4197235_+	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
WP_019080071.1\|4197283_4197670_-	cytochrome b562	NA	NA	NA	NA
WP_019082216.1\|4197847_4199188_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_005174310.1\|4199356_4199902_+	ribosome-associated protein	NA	NA	NA	NA
WP_019082215.1\|4199954_4200221_-	hypothetical protein	NA	NA	NA	NA
WP_046050128.1\|4200225_4200699_-	ribonuclease	NA	NA	NA	NA
WP_046050127.1\|4200796_4202290_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_019082213.1\|4202411_4204367_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_005174322.1\|4204368_4205304_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_005174323.1\|4205311_4205515_-	AaeX family protein	NA	NA	NA	NA
WP_019080077.1\|4205827_4206739_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_046694478.1\|4206992_4207859_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_052750725.1\|4207937_4214444_+	hypothetical protein	NA	NA	NA	NA
WP_046694477.1\|4214504_4218950_+	toxin	NA	NA	NA	NA
WP_046694476.1\|4219027_4219339_+\|holin	holin	NA	NA	NA	NA
WP_046694475.1\|4219350_4219752_+	M15 family metallopeptidase	A9DET4	Yersinia_phage	5.4e-40	58.4
WP_046694474.1\|4219748_4220108_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_046694473.1\|4220291_4223429_+	RHS repeat protein	NA	NA	NA	NA
WP_046694472.1\|4223499_4224945_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_019080079.1\|4224957_4225818_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_060722690.1\|4225814_4229690_-	AsmA2 domain-containing protein	NA	NA	NA	NA
WP_005174333.1\|4229736_4231206_-	ribonuclease G	NA	NA	NA	NA
WP_046694470.1\|4231195_4231789_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_019080082.1\|4231802_4232291_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_005163136.1\|4232287_4233274_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_002228205.1\|4233373_4234417_-	rod shape-determining protein MreB	F2Y0P3	Organic_Lake_phycodnavirus	6.0e-06	22.3
WP_019082211.1\|4234751_4236671_-	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_019080084.1\|4236955_4237933_+	oxidoreductase	NA	NA	NA	NA
WP_019080085.1\|4238086_4239121_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_005174342.1\|4239120_4239720_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_005174343.1\|4239928_4240381_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_005163113.1\|4240538_4241003_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_004392390.1\|4241014_4242364_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_019080086.1\|4242571_4242814_+	YhdT family protein	NA	NA	NA	NA
WP_019080087.1\|4242803_4244258_+	sodium/pantothenate symporter	NA	NA	NA	NA
WP_046050121.1\|4244351_4245233_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_019080089.1\|4245692_4246658_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_002210061.1\|4246682_4246979_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_046695640.1\|4247135_4247384_-	hypothetical protein	A0A1W6JPH4	Morganella_phage	4.7e-18	55.7
WP_046694469.1\|4247402_4247972_-\|tail	tail assembly protein	A0A1B0VMI5	Pseudomonas_phage	2.3e-52	57.6
WP_046694468.1\|4247985_4249647_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	3.9e-273	80.7
WP_046694467.1\|4249633_4249987_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	1.8e-42	71.8
WP_154237413.1\|4250116_4250284_-	hypothetical protein	NA	NA	NA	NA
WP_046694466.1\|4250261_4250708_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	6.5e-50	63.6
WP_046694465.1\|4250707_4250992_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	8.0e-38	77.4
WP_025376816.1\|4250988_4251324_-\|head	phage head closure protein	A0A1W6JP44	Morganella_phage	2.6e-27	59.6
WP_050078270.1\|4251320_4252523_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	5.4e-176	73.0
WP_046694463.1\|4252524_4253082_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	6.3e-71	73.7
WP_046694462.1\|4253124_4254297_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	3.4e-159	73.5
WP_046694461.1\|4254520_4254763_-	hypothetical protein	NA	NA	NA	NA
WP_046694460.1\|4255199_4257557_-	DNA primase	Q7M2A8	Enterobacteria_phage	1.4e-140	38.4
WP_046694459.1\|4257553_4257748_-	hypothetical protein	NA	NA	NA	NA
WP_046694458.1\|4257750_4257921_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_046694457.1\|4257901_4258096_-	hypothetical protein	NA	NA	NA	NA
WP_046694456.1\|4258088_4258280_-	hypothetical protein	NA	NA	NA	NA
WP_052750724.1\|4258272_4259559_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_050078199.1\|4259555_4260074_-	hypothetical protein	NA	NA	NA	NA
WP_046694454.1\|4260213_4260495_-	AlpA family phage regulatory protein	A0A2H4JB58	uncultured_Caudovirales_phage	2.5e-07	43.4
WP_046694453.1\|4260597_4261497_-	hypothetical protein	NA	NA	NA	NA
WP_046694452.1\|4261595_4262825_-\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.1e-142	59.2
WP_046050120.1\|4263076_4264636_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.1e-18	36.4
WP_019080091.1\|4264921_4265392_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_005163090.1\|4265773_4265986_+	RNA chaperone/antiterminator CspA	A0A1W6JNX5	Morganella_phage	1.7e-24	80.0
WP_005163090.1\|4266257_4266470_+	RNA chaperone/antiterminator CspA	A0A1W6JNX5	Morganella_phage	1.7e-24	80.0
WP_005163087.1\|4266741_4266954_+	cold shock protein CspG	A0A1W6JNX5	Morganella_phage	4.4e-25	80.0
WP_026017912.1\|4267543_4268956_+	anion permease	NA	NA	NA	NA
WP_019080096.1\|4269314_4270235_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	8.0e-79	53.5
WP_046694451.1\|4270307_4271846_-	PhoPQ-regulated protein	NA	NA	NA	NA
WP_019080098.1\|4272266_4273292_+	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	5.6e-65	36.9
WP_020424093.1\|4273354_4274533_+	amino acid ABC transporter permease	NA	NA	NA	NA
4273762:4273779	attR	NA	NA	NA	NA
WP_032900810.1\|4274548_4275652_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_005174366.1\|4275660_4276422_+	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.0e-19	30.3
WP_005174368.1\|4276492_4277182_-	LrgB family protein	NA	NA	NA	NA
WP_019080101.1\|4277174_4277600_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_019080102.1\|4277728_4278646_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019080103.1\|4278661_4280311_-	Na+/H+ antiporter	NA	NA	NA	NA
WP_046694450.1\|4280525_4281893_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	7.1e-164	73.9
WP_019080105.1\|4282253_4282925_-	glutathione S-transferase	NA	NA	NA	NA
WP_019080106.1\|4283120_4283672_-	single-stranded DNA-binding protein SSB1	A0A0A0P1Q9	Enterobacteria_phage	1.5e-56	88.5
WP_019080107.1\|4284075_4286907_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.7e-308	55.2
WP_019082203.1\|4286965_4287319_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_046694449.1\|4287822_4289016_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_046050115.1\|4289073_4290153_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	8.9e-29	29.3
WP_005165232.1\|4290182_4291589_-	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	7.4e-193	75.7
WP_046050114.1\|4291773_4292757_+	quinone oxidoreductase	NA	NA	NA	NA
WP_046050113.1\|4292969_4293296_+	hypothetical protein	NA	NA	NA	NA
WP_005165239.1\|4293636_4293855_-	envelope stress response protein PspG	NA	NA	NA	NA
WP_046694448.1\|4294061_4295090_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA

DBSCAN-SWA_8

4525691 : 4531789

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050123130.1\|4525691_4526417_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.9e-07	22.9
WP_050919803.1\|4526413_4527154_-	ABC transporter permease	NA	NA	NA	NA
WP_019081614.1\|4527237_4527564_-	hypothetical protein	NA	NA	NA	NA
WP_019081615.1\|4527565_4528288_-	hypothetical protein	A0A1D8KNV9	Synechococcus_phage	3.0e-28	30.0
WP_032901223.1\|4528277_4528931_-	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	1.7e-35	40.1
WP_019081617.1\|4528939_4529566_-	hypothetical protein	NA	NA	NA	NA
WP_019081618.1\|4529562_4530324_-	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	3.4e-59	50.2
WP_019081619.1\|4530357_4530906_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.2e-50	52.5
WP_019081620.1\|4530910_4531789_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	7.0e-40	38.9

DBSCAN-SWA_9

4618287 : 4626609

Enterobacteria_phage(66.67%)

integrase

attL 4615745:4615758|attR 4627525:4627538

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4615745:4615758	attL	NA	NA	NA	NA
WP_046694371.1\|4618287_4620621_-	DNA primase	Q7M2A8	Enterobacteria_phage	2.6e-259	59.7
WP_046051905.1\|4620634_4620976_-	DUF5375 family protein	NA	NA	NA	NA
WP_046694370.1\|4620972_4621236_-	hypothetical protein	NA	NA	NA	NA
WP_046694369.1\|4621232_4621778_-	ash family protein	Q7M2A7	Enterobacteria_phage	9.4e-27	56.8
WP_046695634.1\|4621782_4621971_-	hypothetical protein	NA	NA	NA	NA
WP_046694368.1\|4622018_4622276_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.7e-16	57.1
WP_046694367.1\|4622875_4623595_+	hypothetical protein	NA	NA	NA	NA
WP_071843340.1\|4623596_4623842_+	transcriptional regulator	A0A2I8TV89	Erwinia_phage	2.6e-13	56.1
WP_032814188.1\|4624223_4624535_+	hypothetical protein	NA	NA	NA	NA
WP_046694366.1\|4624601_4625417_-	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	1.2e-09	25.6
WP_046694365.1\|4625433_4626609_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.6e-185	80.8
4627525:4627538	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage