CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP012403	Azospirillum thiophilum strain BV-S chromosome 3, complete sequence	2 crisprs	NA	6	1
NZ_CP012408	Azospirillum thiophilum strain BV-S chromosome 8, complete sequence	0 crisprs	PD-DExK	0	0
NZ_CP012407	Azospirillum thiophilum strain BV-S chromosome 7, complete sequence	2 crisprs	c2c9_V-U4,cas14j	1	3
NZ_CP012401	Azospirillum thiophilum strain BV-S chromosome 1, complete sequence	2 crisprs	csa3,DEDDh,WYL,DinG,casR,RT,cas3	0	3
NZ_CP012405	Azospirillum thiophilum strain BV-S chromosome 5, complete sequence	1 crisprs	csa3	1	44
NZ_CP012406	Azospirillum thiophilum strain BV-S chromosome 6, complete sequence	1 crisprs	WYL	0	3
NZ_CP012404	Azospirillum thiophilum strain BV-S chromosome 4, complete sequence	1 crisprs	csa3,DEDDh	0	1
NZ_CP012402	Azospirillum thiophilum strain BV-S chromosome 2, complete sequence	1 crisprs	csa3	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012403_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012403_1

213915-214209

Orphan

Consensus_repeat	Method
CAGGATGTCGTCTCCCTTGCCGCC	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_CP012403_1

>merge|NZ_CP012403|1|213915-214209|CRISPRCasFinder
CAGCAGGTCATCTCCCTTGCCACCTTCAAGTCGGTCGTTGCCTTCGTCGCCGAACAGCGTGTCGTCACCGTCGCCACCGCTCAGCATGTCGTTGCCAGTACCGCCGCGCAGGATGTCGTCTCCCTTGCCGCCGTCCAATACGTCGTCGTGACCGCCGCCGAACAGGATGTCGTCGCCCTTGCCGCCAGTCAGGATGTCGGCGCCGTCGCCCCCCGACAACACATCGTCGCCATTGCCGCCGTCCAGCACGTCGCGGCCGGCACCACCGATCAGAACGTCGTCACCATTCCCCCCC

>NZ_CP012403|1|1|213915-214209|CRISPRCasFinder
CAGCAGGTCATCTCCCTTGCCACC	TTCAAGTCGGTCGTTGCCTTCGTCGCCGAA
CAGCGTGTCGTCACCGTCGCCACC	GCTCAGCATGTCGTTGCCAGTACCGCCGCG
CAGGATGTCGTCTCCCTTGCCGCC	GTCCAATACGTCGTCGTGACCGCCGCCGAA
CAGGATGTCGTCGCCCTTGCCGCC	AGTCAGGATGTCGGCGCCGTCGCCCCCCGA
CAACACATCGTCGCCATTGCCGCC	GTCCAGCACGTCGCGGCCGGCACCACCGAT
CAGAACGTCGTCACCATTCCCCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012403.1\|WP_045584049.1\|203965_205153_-\|polysaccharide-pyruvyl-transferase-family-protein	unknown	unknown	gnl\|CDD\|377253
NZ_CP012403.1\|WP_144428316.1\|227192_227408_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012403.1\|WP_052710291.1\|216330_218055_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP012403.1\|WP_045584057.1\|219684_220242_+\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP012403.1\|WP_045584052.1\|210373_211201_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP012403.1\|WP_045584048.1\|203117_203924_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012403.1\|WP_045584055.1\|214996_216334_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP012403.1\|WP_045584053.1\|211197_213492_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133029
NZ_CP012403.1\|WP_045581642.1\|198039_198423_-\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	gnl\|CDD\|366690
NZ_CP012403.1\|WP_052710212.1\|225596_226949_-\|ANTAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|377989
NZ_CP012403.1\|WP_045584050.1\|205351_206665_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340850
NZ_CP012403.1\|WP_045584051.1\|206805_208989_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012403.1\|WP_158511085.1\|198664_198844_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP012403.1\|WP_045584060.1\|222512_223889_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|181707
NZ_CP012403.1\|WP_045584061.1\|224046_225546_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP012403.1\|WP_045584058.1\|220256_221480_+\|DUF2336-domain-containing-protein	unknown	unknown	gnl\|CDD\|370815
NZ_CP012403.1\|WP_082109167.1\|208985_210377_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340850
NZ_CP012403.1\|WP_045584056.1\|218609_219623_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|224012
NZ_CP012403.1\|WP_045584059.1\|221489_222395_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP012403.1\|WP_052710211.1\|199556_203009_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|224118

Protein	Function_ID	Function_description	E-value
NZ_CP012403.1\|WP_045584049.1\|203965_205153_-\|polysaccharide-pyruvyl-transferase-family-protein	gnl\|CDD\|377253	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase. Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.	1.96007e-15
NZ_CP012403.1\|WP_045584057.1\|219684_220242_+\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.09636e-12
NZ_CP012403.1\|WP_045584052.1\|210373_211201_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.07745e-19
NZ_CP012403.1\|WP_045584055.1\|214996_216334_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	9.41834e-110
NZ_CP012403.1\|WP_045584053.1\|211197_213492_-\|glycosyltransferase	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	4.00758e-32
NZ_CP012403.1\|WP_045581642.1\|198039_198423_-\|IS66-family-insertion-sequence-hypothetical-protein	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	5.191e-12
NZ_CP012403.1\|WP_052710212.1\|225596_226949_-\|ANTAR-domain-containing-protein	gnl\|CDD\|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	5.74499e-47
NZ_CP012403.1\|WP_045584050.1\|205351_206665_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340850	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).	2.79428e-97
NZ_CP012403.1\|WP_052710291.1\|216330_218055_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP012403.1\|WP_158511085.1\|198664_198844_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.41139e-11
NZ_CP012403.1\|WP_045584060.1\|222512_223889_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|181707	PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional.	0
NZ_CP012403.1\|WP_045584061.1\|224046_225546_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP012403.1\|WP_045584058.1\|220256_221480_+\|DUF2336-domain-containing-protein	gnl\|CDD\|370815	pfam10098, DUF2336, Uncharacterized protein conserved in bacteria (DUF2336). Members of this family of hypothetical bacterial proteins have no known function.	2.96502e-55
NZ_CP012403.1\|WP_082109167.1\|208985_210377_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340850	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).	9.95514e-89
NZ_CP012403.1\|WP_045584056.1\|218609_219623_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	1.18555e-176
NZ_CP012403.1\|WP_045584059.1\|221489_222395_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.82988e-31
NZ_CP012403.1\|WP_052710211.1\|199556_203009_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0

>NZ_CP012403.1|WP_045584053.1|211197_213492_-|glycosyltransferase
MTVIAVLPNSVSIAPAQRLVLGRSFLLVSWTMDGPMGRSAEQAGPITPSVNGEAVRPPFTTLSVDTGWGGRRMLSILPAPRDPRAPIHFIANNRVIAELRTETGGADIDTAGLLGSLDGAARLRVLRFLFDFACSTPLLRRDAVFVALCRRLVLDYAAEPPALTIRAIAGGDMLLCAGALSGRFGAISGLVILSPGAVVRAPFDVCIGADPTGKGRIAFDLLVDRGLCAPGNLLVVLGANGVACRRFPDEPAALPTLTDRLNARPGTAATLRHYLLVCLAKRGRSDASAAAAVGELQALAPLPRRQVADAKRPIGASLDLAIPAPDGGLFLAGWLHDPHRLAAELVVRTPFGGERRVERFAKRFPREDVATLYGSTGIDRSGFVLHLPGPPEPAEALQVTAELRLASGGALRLVPPPRPHAHADARAAVLGSLPPRFATPDLLEHVMFPAVAPLHAAHLATRGEPELVVYGERKAKPPVSVIIPLYRTLEFLRFQISSFATDSAMADVELVFVLDSPEQRDEVVHLLHGFHGLYGLPMVLLVQSANYGYSAANNAGVAVARGNRLLFLNSDVVPDRAGWLPQLVAALEECPGVGAVGPKLLFDDDSLQHAGLYFDRDLQGAWYNHHYFKGLPRDFAPACRPRSVPGVTGACLLTTRSVFAAANGFCEDYVIGDFEDSDLCLRMRGQGLDIRYAPSVELYHLERRSIGRHQGYTRGVASEYNRWLHGRRWADRMAELMARDWCAHDEAPPPARKRAGKTAAQVTR
>NZ_CP012403.1|WP_045584052.1|210373_211201_-|class-I-SAM-dependent-methyltransferase
MNALLPSPQLAVLRRQTDPRLEWLCAQIARNCFLPVPPSELHFIGDGDFRAIGAEFLRHFVRLGGLRPYHRVLEIGCGVGRMAMPLTQYLEASYDGIDIVLDGIRWCAATITPAYPEFRFHHLDIANGLYNPDGRIEGETATLPFKAGVYDFVILTSVITHLRTADTERYAAEIARVLKPGGRCFLSLFLADATARTGIAKGTARPAFRDGPEVELLADPEHPNAAIAYDEAFLIDRFAARGLRPARAIAHGHWSGQREAENFQDLLVLEKGIGR
>NZ_CP012403.1|WP_082109167.1|208985_210377_-|glycosyltransferase-family-4-protein
MSRRRLPLVPAGQTMSRPAARPPARPLVTVRPPRVLLIAHNHPSLHPGGTEIFAYELFGGLKAAGAECLFLACTNDTHRAPRPGTGFQTLGRSADEVLLWAGHFDHFHQSQIDLHGLVPDLSNLLRAFRPDIVHVHHTLLLGVEMLFLIRRVCPDAKIVYTLHDYYPICANDGQMVTPPQGEGGGRSLCMQASPDACHRCFPARPADQFLLREKHIKAMFGLVDRFLAPSRFLRDRYVDWGLNSEHIEVMANSRPAVEPAVVRDIGPGVARDAFAYFGNLNPFKGVTVALDAVARMAHSGLTPSLAVHGGSLYQAPEFRRQVTEGFEAARGLATAHGPYRREEMPALMAAADWVVMPSIWWENAPLVIQEAFQHHRPVIVSGIGGMAEAVRDGVDGLHVRPNDPADLARVMIRAMTEPGLWERLSAGIPAVRPTEEATSLHLALYGELLTSASTTTSQGIRTR
>NZ_CP012403.1|WP_045584051.1|206805_208989_-|hypothetical-protein
MKDRSTKADITAAVLLDEDTLILFGAIDLPLPTDGVVLLDGTADGRFNGHCWIDAEGERWFLGAMRVAGLAHMRPSRIEILDANGKRLLLPRLSNVRTNPSHLVAALREVQPQALTGALDIAVAMLAGQQGEGDSDRHTRLLTGLAQAVSRPDGFAEVLGRFHDGALMVQGWSHGFPSGGHRVLVEAVGMSLHDAVAAPFHRPDLPDDAAGLLAILEGPAAMPESIRRIHFRTADGWRHLAIFEHRQVLADGVASAHARDMLGQLQPDAAHHGVAAAVAARYNGVETVSQLDLPVRIGLDMALRVPGAGLFVCGWLLDPTQAVRAVTLKGAGMAIRLDEDWSRLGRKDVSDAFAHDPLFVGRLSPGDYAHGFTAFAREAAGVAGDAEFHLELALADGVAFLPLPCQPPSAESLRRMLGAVNPDSPAIDRVVEAHLGPMLRIAAADRAAPQSVLHQMGRALKCPRVSVMLPVCDGREDIDLNLARMANDPDFAEAEILVVAGAGTHERLAGMVRQAAGFYRLAVAFVAAPGAVDPFEAVTAALPHANADRVLLLSPSVLPTERGWLSALERAIRKPNAVGSVALAPVMASPTLLYEDHSIRFAGIVAVEGPGGAVTYERRFAGYPRDWLKEQEASAVDAASADCAMLPRELLVRAMADGGRYLGSEPKGLDLCLRVRAVGGTCLWLPKLRLVAVDEQTRTVSDPRLERMSALVDQWSFAERWKASIAA
>NZ_CP012403.1|WP_045584050.1|205351_206665_-|glycosyltransferase-family-4-protein
MSKTKRALIISHGHPSFSLGGGEVASYNLHNGLHDLPGWESHYLARVAPPIAQHRGSALMALRQKEREVLYYANDYDHFRLSNRNLPGLEKDFVRYVRDLQPDVVNFHHFLGLGIETIQAVRQALPRVPIVVTLHEYLSICHHHGQMVKTSRNALCYRASPADCAGCFPHIGEAEFFKRELFLKTFLEQADFYVSPSNFLIDRYVDWGLPREKFRRIENGLTIEGIAPPRPVVRGGKRNRFAFFGQLTEFKGAHLLVEAVSRLSEKAWGEDGALMIFGGNLERQPEAYQKRFNDAVEKAGNRVRFYGSYRSAELPGLMKDVDWMIIPSIWWENSPVVIQEAFLHGRPIIASNIGGMAEKVTHGVDGLHFRNGSVEDLVDRMTEALITPELWDRLRLRIRRPIDRAECARQHAELYDALLAAGGSAPSMPERAVAQRP
>NZ_CP012403.1|WP_045584049.1|203965_205153_-|polysaccharide-pyruvyl-transferase-family-protein
MANILVMIPSGEVYDHDCVRWYSYQDIQRSISHYHNIGDAFVFDSSLKLLTYDKLDVLEIREFRQDAVDRINAEYDYVFLRGSNYIHDSMEWPAATLQVLAKLRIPVIAFGVGAQAPATGKLTLTEESKRIWRMIADKSATLGVRGTYTAEVLWDLGIKNTRIVGCPTAFRNRDPELRIDLPSLDSVRKVGITMRREVSKHYSPDVRKYLERHRDFVKDISCRFDTVLMMQGEVEEKKLLWGTDEQKAEAWSQLHDSAWLKQWYFDDEMDALYRNRLWYSDVVADYEALVRSKDLVLGYRLHGNLMALSNATPSVYFSYDSRTAEFAETFAIPCYNVYSDKPFVLEEYWDQGLFEKFNRTYYQRYRDMREFLDENYVPHRMPSHAIRKTVDRKAA
>NZ_CP012403.1|WP_045584048.1|203117_203924_-|hypothetical-protein
MSTTARIVELRESSPAADPPDALQAAAIVGHIDAVQGDRIFGWAWDGNHPTDRLEVELRLERDGGPPQTLARVLADRMRADLAGGGIGDGAHAFEAELIFPEGSDPSRVVAVVCAPATGETATFVQPNPEDQRLDQRLDRLLGPHLRRIDERIDALRRDQRQIAAAQQTVGRLLRDAGDGVAALRTDAARAETASGERTDALAEALRDLTERVGGLEVFLMRMDQTLRGMDNGSAEKGGGSGTFPLLTVLGSTAGAFLAVLAGWLMLH
>NZ_CP012403.1|WP_052710211.1|199556_203009_-|DEAD/DEAH-box-helicase
MLDGAPIADPSPVSSDPGSAMSSLTVRSEGELAVRLAALTRRFVGGSASNRQGDVLLLARSDGRAHRLARLTGDLAPDLDIVLLPIEETAAGYRTAPSRAVLGRRAAGLMQLVEGAGAARGRLIVASADLALQRLPPPQAWRGTRFPLSRGMAYDEPTWRGWFVRAGYVLDERVDEPGEAAIRGAVVEVFPGDGERPVRCDIAAGVVRELRLFDPASQRSIAPIDGITLCPVTDLFLGPETLDRLTTSLAGLGYEMPEGLREALEQGHRPYGFDFQLPNVFDDCPLLLDLLPEAMLVLDAGARDRIEARADDLADVALDRRIRRDDACILPVPALERRLIGVDGLESMLAAREVVQVDFIPSPAMEPVGTERMLLRRAGALIREGRPVLLAAAGSCEAERLAERASAFLGAGLGRPVTRLGRWPDPPLEGGDCAVLNLHAADGFDCDGMTVLVAPRHAEEGGRGAPARTPLAPSDLATGDFVVHLDYGIGRLVGLETIERNESTADFLVLEYAHDDRLLVPTADFDRLWRHGSADTGARLDSLKNAHWLDRRAVLEAEIVETARGILRAARRSARETAPVIDPPADRMRRFGARFGFDPTEGQRRAIHAVLEAMRSGHPMDHLVCADVGYGKTEVALRATAAVAFAGHQVAVMAPTTVLARQHFEVFRRRFAGFGIRVEPLIGAMPKAEVEQVQAGLADGEVDVVVGTHALLSKRLRFKRLGLMVVDEEQRFGAEQKQALKRRTRGAHSLALSATPIPRTLQGALAGLRGLSIIDTPPAQRRPVRTAVTPRDAATVRAALLRELGRGGQAFCVTPRIADLCELEEWVRGLVPDARVAVAHGRMAAAALDDAVMGFVDGKSDILVATPIIESGIDIPRANTLLLFRPHLFGLGQLHQLRGRVGRSTVQGYAYLLTDPEQPLEERAARRLGSLEVIESLGGGFVLSMLDLDQRGAGDLLGKDQSGHLRAVGTELYQRILADALRILRHRSDERWDPEVTVAVPHFIPAAYIPEEELRIGLHRRIARTGDASELDALREEMEDRFGPLPDPVQRLLAIAALRCRCRALGIASLGCGPAGVAATLRGNRAVARAATLAKRSRGLLHAQDDRATAALEAFDADARLANAVRVLDSIEATVNKAKQRRRTDEPTEI
>NZ_CP012403.1|WP_158511085.1|198664_198844_-|transposase
MAPRRRRWSQTAKEQLVAETCEPGMSVSLVARRRGGDPSLLFRWRRQMLGKRCVTTHPT
>NZ_CP012403.1|WP_045581642.1|198039_198423_-|IS66-family-insertion-sequence-hypothetical-protein
MTASAPLVMEIVEAAPRRRYWSQAEKEQLVAETCEPGVSVSLVARRRGVDPSLLFRWRRQMLTPAEPPPIFAPVEVADTTSALPLTPPTPCGASMIEIELAGGRRLRVGRDVDAEALRRVISVLERS
>NZ_CP012403.1|WP_045584055.1|214996_216334_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MSDSPAIWTATIDVMPAEPSLRNTALAGALAVLVGFGGFLGWACTADLDSAALAAGTVMVESHRKTISHLEGGILRDLLVKDGDLVQAGQVLLRMDSTQSQAVVAQLQGQHWTALARLGRLRAEQSDSPAPLFAADLVKAAHDNPVAAEALAVEERLFRSRRDSYEAQLGIQRRQISQLRDQIVALEAQRVATADRLRYTEDEQRVVQGLLAKGYERRPRLLELQRNVADSQGRLGELMANKSKAEQAIAAAELEMINIGNTRRSGVSTDLQTAQAAVSDLSERLRSADDVLLRQAVTAPQAGRITGLKFFTPGGVVPAGAGILDIVPQDDAMIVEARVSPHDVQNVEVGSKAMVKLTGYRQRAVPPVAGQVVALSADQLEDERTGTFYFAVRISMDATELKALPGVELHPGMPAEVMIHGHARRAIEYFLTPLTDGLQRAFREK
>NZ_CP012403.1|WP_052710291.1|216330_218055_-|type-I-secretion-system-permease/ATPase
MSSVDRPLLTQAYRKIGQGLLLAGILSLFVNILMLVVPLFTMQVYDRVMSSRSLETLTMLAIIAVGALALYGVLDFIRARAFLVTSAVIAHRFNVPALEASIVDALSGGPRNAAQTMRDLNDLRGFMTSSAVTAPLELAWAPIFLAILFLLHPVYGFLAIGSALILLVMGVLTDALTRRPMAQANEASARVFADIAGTVRHAEAIEAMGMLPALARRWQSAQSGSAGMIDRGATMSRGLAAASRSLRLMLQVGVIAAGATLVIDNLVTPGSMMAAGLITGRLLHPFEQMVDGWRQWVKALEAHRRIRDLLNNGASARSTMPLPAPHGTLAVDRVSHVPAGLSRPVLRNVSFAAEAGEVLGIIGPSGAGKSTLARLLVGVWQPTAGGIYLDGASTYLWERESFGKYVGYVPQSVALLDGTIGENIARMANADPAEIVRAARLAGVHEMIGRLPFGYDTPVGESAFSLSGGQRQRIALARALFGRPRLLVLDEPNSNLDHEGEQALLAAVHKVKAEGTTVVMIAHRPSIVAVADKLVVMKDGAVEHFGARGDVLKLVQPGGTPTGVARLVRSGEQR
>NZ_CP012403.1|WP_045584056.1|218609_219623_+|UDP-glucose-4-epimerase-GalE
MTIPKTILVTGGAGYVGSHCVAELLDHGNRVVVFDNLRQGHAAAVPPEAAFVQADLADEAALARVFSQWRFDAVFHFAALSVVGESMRDPHAYLHGNSVTSLNLIRAAVKAGVMKLVFSSTANLFGSPKRIPIDEDEAVDPGSPYGESKYMIERALHWADRCHGLRSACLRYFNAAGAHPSGRLGEDHSPETHLIPLVMDAATGTRPHIEIFGDDYETRDGTCIRDYIHVCDLADAHLRVLDVLDERSVRYNLGNGTGYSVREVIGSVERITGRTVPVKIGPRRPGDLPVLIASSERIRRDLGWQPRFPDLDSIVGSAWAWRNANPQGFRGIAAAAE
>NZ_CP012403.1|WP_045584057.1|219684_220242_+|winged-helix-DNA-binding-protein
MSNLNWDDDTPEPAPGEKASAQASGKPADVLDLADFHGMARLIERMHRRYLDVVRVGLSRQGVEDIGPVQALMVMLIGEDELSVRDLMERGYYLGSNASYSLKILVDAGYINRAANQRDRRTARLQLTDKGRELWECLRRMEQAQAEALVRNETEVRDLKASYRTLRRLDRLWGDMIRYSCLDFD
>NZ_CP012403.1|WP_045584058.1|220256_221480_+|DUF2336-domain-containing-protein
MPQPDAPMPDAPIPDALPPNSLSSKDVERLLASPTAQTRIETMSKLFQDLEAGTLSPAERSLAIEVVHCFAGDAQVAVREAVAWQLRNSPLLTGDLAERLVRDVGRVAFPILRDAAGLTDDLLLDVLSDPDSGKHVAVASRSRVSARVSGAIAERGNVVAVTALLRNDGAELPDSAMSRALDRFGRVRMVSEAAATRPGLSLAMVERVVAFVSDSMRTTLMQAHGLSRELVERLVERGREAATMRLLRPVLRGAEDIEAVIQWLHANRRLTPVLLFRALCAGDVSLFVSGMALRAAIPPDNARRLAWDDGELGMAALLKKAVVAPGLLQPFQVAVGVAKRLGYEGAEASREDFQAEVISELFTACTPTNDWMVDDLLLQLFDQKSDEVIDRALDQAGLPFSPLRTMQ
>NZ_CP012403.1|WP_045584059.1|221489_222395_-|LysR-family-transcriptional-regulator
MSKPSHTLPAVADADIRLLRVFLTVVECGGFSAAEVELNISRAAISQHMADLERRLGLTLCRRGRGGFRLTEEGQLAHEAALRLLAGLESFRSEINAAHGRLRGELNIGITDNLVTMPRMRVTNALRGLKREAPEVRVNIRMIPPNEIERGVLDGRLHVGVVPDRRALPGLERVTLYEEESRLYCGRGHPLFDAPTGTVTREAVEAADAVAPTQAQPPHALTATATATDREGVAFLLLTGCYIGFLPVHYAAQWVERGTMRALLPDSHHYRVGFSAVTKKGVPPNLVLERFMTLLERPDEG
>NZ_CP012403.1|WP_045584060.1|222512_223889_+|aspartate-aminotransferase-family-protein
MAPLDNDFEHGNPGFGTDRAAGVTREELDAHWMPFTANREFKKNPRMMMKAEGAWYWDAQGRKIYDSLSGLWCSGAGHCRSEIAEAVARQIGTLDYSPAFQYGHPAAFKLAHKLASMTPAGLDHVFFVNSGSEAADTSLKLARAYWRMKGQPAKTKLIGRVKGYHGVNFGGTSLGGIVGNRKLFGTGVDADHLPHTLLPQNVFTKGMPDEGAHLADALEDLVALHDASNIAAVVVEPMAGSAGVLPPPKGYLQRLREICTKHGILLIFDEVITGFGRMGTAFGADYFGVVPDIMNVAKGLTNGAVPMGAVVASHEIYQTFMDNGGPEYLVEFPHGYTYSAHPVACAAGLAALELFEREKLADKAAALMPHFEDLIHGLKGLKNVADIRNCGLAGAVQIAPLPGEPARRPYEIAMKCWDAGYYVRYGGDTLQFGPHFISEREDLDRLFNVVADAIQATA
>NZ_CP012403.1|WP_045584061.1|224046_225546_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MPIVPHLIGGKTDAPAGSRTADIVNPATGEVTGQVALAGRKTVEEAIAAAEAAFPGWRATPPAKRARVMFRFKQLLEENAERVCALITQEHGKVLDDALGELTRGIENVEYACGVPELLKGEFSKNVGPAIDSWSEFQPLGVVAGITPFNFPAMVPLWMYPIAIACGNTFILKPSERDPSAALLVAQLAEQAGLPPGVLNVVNGDKEAVDTLLTDPRVQGVSFVGSTPIAEYVYATASAHGKRVQALGGAKNHAIVMPDADLDNAVSALMGAAYGSCGERCMAISVVVAVGDEVADRLVEKLSVALRALKVGAGTSAGCEMGPLVTRAHHDKVRAYVDQGVSEGAELVVDGRGLVVPGHENGNFLGGCLFDRVTPEMTIYREEIFGPVLCLVRVKTMQEGMDLIDGHEYGNGTCLFTRDGEAARYFSDMIKVGMVGINVPLPVPVAYHSFGGWKRSLFGDLSAYGPDGVRFYTRRKTITQRWPTGGLREGAQFAFPSMK
>NZ_CP012403.1|WP_052710212.1|225596_226949_-|ANTAR-domain-containing-protein
MENERGTGDGGTGAMALRFLRVARLCRIRDVERLLAVGALVRDIGGLIHVLQAERGASSIYLGSCGKRFATDRAGRVAEALALEAVLRDRLDHLDEQLDRMSSGARFYGRVAGALQALDRLPALRDQVASLALVPQDSVKAFTDVIGHLLAVLVEAADIAADPAISRALVALFNIVQGKEFAGQERATAGAGFSRGRFDGADHARLIQLIDAQNRAFRIFSEFADPAHTAAFRAALSDPAVTEVERMRAVALADGARHGELSGIAPEAWFEQATRRMDRMKTVEDRLTGDLRLLCEAKLAQARADLEQTDLEQAALHSPDAAMPVAMMLVDAGSPLPGGPSLPGQEDAGLFAPDGLPPRLMRSVLDVVQAQSQRLRDVSLELETAKAALNERKVIDRAKGLLMSTRNLSEEEAYKLIRKTAMNQNKRIIEVAEAILSMSDILRGVTTGGG
>NZ_CP012403.1|WP_144428316.1|227192_227408_+|hypothetical-protein
MTKNPFMSAWLSWANRATSHATGMWTAAAVSAAKRNQSAALKAMMTPPNSASTGGGAKNGAKPKRRSGPAR

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Crispr_ID: NZ_CP012403_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012403_2

214320-214397

Orphan

Consensus_repeat	Method
CAGGATGTCGTCTCCCTTGCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012403_2

>merge|NZ_CP012403|2|214320-214397|CRISPRCasFinder
CAGGGCATCGTGCCCATCGCCGCCGAGCAGGGTGTCGTTTCCGTTGCCCCCCAGCAACAGATCGTCGCCCTGCCCGCC

>NZ_CP012403|2|2|214320-214397|CRISPRCasFinder
CAGGGCATCGTGCCCATCGCCGCC	GAGCAGGGTGTCGTTTCCGTTGCCCCCCAG
CAACAGATCGTCGCCCTGCCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012403.1\|WP_045584049.1\|203965_205153_-\|polysaccharide-pyruvyl-transferase-family-protein	unknown	unknown	gnl\|CDD\|377253
NZ_CP012403.1\|WP_144428316.1\|227192_227408_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012403.1\|WP_052710291.1\|216330_218055_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP012403.1\|WP_045584057.1\|219684_220242_+\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP012403.1\|WP_045584052.1\|210373_211201_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP012403.1\|WP_045584048.1\|203117_203924_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012403.1\|WP_045584055.1\|214996_216334_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP012403.1\|WP_045584053.1\|211197_213492_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133029
NZ_CP012403.1\|WP_045581642.1\|198039_198423_-\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	gnl\|CDD\|366690
NZ_CP012403.1\|WP_052710212.1\|225596_226949_-\|ANTAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|377989
NZ_CP012403.1\|WP_045584050.1\|205351_206665_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340850
NZ_CP012403.1\|WP_045584051.1\|206805_208989_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012403.1\|WP_158511085.1\|198664_198844_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP012403.1\|WP_045584060.1\|222512_223889_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|181707
NZ_CP012403.1\|WP_045584061.1\|224046_225546_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP012403.1\|WP_045584058.1\|220256_221480_+\|DUF2336-domain-containing-protein	unknown	unknown	gnl\|CDD\|370815
NZ_CP012403.1\|WP_082109167.1\|208985_210377_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340850
NZ_CP012403.1\|WP_045584056.1\|218609_219623_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|224012
NZ_CP012403.1\|WP_045584059.1\|221489_222395_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP012403.1\|WP_052710211.1\|199556_203009_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|224118

Protein	Function_ID	Function_description	E-value
NZ_CP012403.1\|WP_045584049.1\|203965_205153_-\|polysaccharide-pyruvyl-transferase-family-protein	gnl\|CDD\|377253	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase. Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.	1.96007e-15
NZ_CP012403.1\|WP_045584057.1\|219684_220242_+\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.09636e-12
NZ_CP012403.1\|WP_045584052.1\|210373_211201_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.07745e-19
NZ_CP012403.1\|WP_045584055.1\|214996_216334_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	9.41834e-110
NZ_CP012403.1\|WP_045584053.1\|211197_213492_-\|glycosyltransferase	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	4.00758e-32
NZ_CP012403.1\|WP_045581642.1\|198039_198423_-\|IS66-family-insertion-sequence-hypothetical-protein	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	5.191e-12
NZ_CP012403.1\|WP_052710212.1\|225596_226949_-\|ANTAR-domain-containing-protein	gnl\|CDD\|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	5.74499e-47
NZ_CP012403.1\|WP_045584050.1\|205351_206665_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340850	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).	2.79428e-97
NZ_CP012403.1\|WP_052710291.1\|216330_218055_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP012403.1\|WP_158511085.1\|198664_198844_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.41139e-11
NZ_CP012403.1\|WP_045584060.1\|222512_223889_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|181707	PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional.	0
NZ_CP012403.1\|WP_045584061.1\|224046_225546_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP012403.1\|WP_045584058.1\|220256_221480_+\|DUF2336-domain-containing-protein	gnl\|CDD\|370815	pfam10098, DUF2336, Uncharacterized protein conserved in bacteria (DUF2336). Members of this family of hypothetical bacterial proteins have no known function.	2.96502e-55
NZ_CP012403.1\|WP_082109167.1\|208985_210377_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340850	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).	9.95514e-89
NZ_CP012403.1\|WP_045584056.1\|218609_219623_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	1.18555e-176
NZ_CP012403.1\|WP_045584059.1\|221489_222395_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.82988e-31
NZ_CP012403.1\|WP_052710211.1\|199556_203009_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0

>NZ_CP012403.1|WP_045584053.1|211197_213492_-|glycosyltransferase
MTVIAVLPNSVSIAPAQRLVLGRSFLLVSWTMDGPMGRSAEQAGPITPSVNGEAVRPPFTTLSVDTGWGGRRMLSILPAPRDPRAPIHFIANNRVIAELRTETGGADIDTAGLLGSLDGAARLRVLRFLFDFACSTPLLRRDAVFVALCRRLVLDYAAEPPALTIRAIAGGDMLLCAGALSGRFGAISGLVILSPGAVVRAPFDVCIGADPTGKGRIAFDLLVDRGLCAPGNLLVVLGANGVACRRFPDEPAALPTLTDRLNARPGTAATLRHYLLVCLAKRGRSDASAAAAVGELQALAPLPRRQVADAKRPIGASLDLAIPAPDGGLFLAGWLHDPHRLAAELVVRTPFGGERRVERFAKRFPREDVATLYGSTGIDRSGFVLHLPGPPEPAEALQVTAELRLASGGALRLVPPPRPHAHADARAAVLGSLPPRFATPDLLEHVMFPAVAPLHAAHLATRGEPELVVYGERKAKPPVSVIIPLYRTLEFLRFQISSFATDSAMADVELVFVLDSPEQRDEVVHLLHGFHGLYGLPMVLLVQSANYGYSAANNAGVAVARGNRLLFLNSDVVPDRAGWLPQLVAALEECPGVGAVGPKLLFDDDSLQHAGLYFDRDLQGAWYNHHYFKGLPRDFAPACRPRSVPGVTGACLLTTRSVFAAANGFCEDYVIGDFEDSDLCLRMRGQGLDIRYAPSVELYHLERRSIGRHQGYTRGVASEYNRWLHGRRWADRMAELMARDWCAHDEAPPPARKRAGKTAAQVTR
>NZ_CP012403.1|WP_045584052.1|210373_211201_-|class-I-SAM-dependent-methyltransferase
MNALLPSPQLAVLRRQTDPRLEWLCAQIARNCFLPVPPSELHFIGDGDFRAIGAEFLRHFVRLGGLRPYHRVLEIGCGVGRMAMPLTQYLEASYDGIDIVLDGIRWCAATITPAYPEFRFHHLDIANGLYNPDGRIEGETATLPFKAGVYDFVILTSVITHLRTADTERYAAEIARVLKPGGRCFLSLFLADATARTGIAKGTARPAFRDGPEVELLADPEHPNAAIAYDEAFLIDRFAARGLRPARAIAHGHWSGQREAENFQDLLVLEKGIGR
>NZ_CP012403.1|WP_082109167.1|208985_210377_-|glycosyltransferase-family-4-protein
MSRRRLPLVPAGQTMSRPAARPPARPLVTVRPPRVLLIAHNHPSLHPGGTEIFAYELFGGLKAAGAECLFLACTNDTHRAPRPGTGFQTLGRSADEVLLWAGHFDHFHQSQIDLHGLVPDLSNLLRAFRPDIVHVHHTLLLGVEMLFLIRRVCPDAKIVYTLHDYYPICANDGQMVTPPQGEGGGRSLCMQASPDACHRCFPARPADQFLLREKHIKAMFGLVDRFLAPSRFLRDRYVDWGLNSEHIEVMANSRPAVEPAVVRDIGPGVARDAFAYFGNLNPFKGVTVALDAVARMAHSGLTPSLAVHGGSLYQAPEFRRQVTEGFEAARGLATAHGPYRREEMPALMAAADWVVMPSIWWENAPLVIQEAFQHHRPVIVSGIGGMAEAVRDGVDGLHVRPNDPADLARVMIRAMTEPGLWERLSAGIPAVRPTEEATSLHLALYGELLTSASTTTSQGIRTR
>NZ_CP012403.1|WP_045584051.1|206805_208989_-|hypothetical-protein
MKDRSTKADITAAVLLDEDTLILFGAIDLPLPTDGVVLLDGTADGRFNGHCWIDAEGERWFLGAMRVAGLAHMRPSRIEILDANGKRLLLPRLSNVRTNPSHLVAALREVQPQALTGALDIAVAMLAGQQGEGDSDRHTRLLTGLAQAVSRPDGFAEVLGRFHDGALMVQGWSHGFPSGGHRVLVEAVGMSLHDAVAAPFHRPDLPDDAAGLLAILEGPAAMPESIRRIHFRTADGWRHLAIFEHRQVLADGVASAHARDMLGQLQPDAAHHGVAAAVAARYNGVETVSQLDLPVRIGLDMALRVPGAGLFVCGWLLDPTQAVRAVTLKGAGMAIRLDEDWSRLGRKDVSDAFAHDPLFVGRLSPGDYAHGFTAFAREAAGVAGDAEFHLELALADGVAFLPLPCQPPSAESLRRMLGAVNPDSPAIDRVVEAHLGPMLRIAAADRAAPQSVLHQMGRALKCPRVSVMLPVCDGREDIDLNLARMANDPDFAEAEILVVAGAGTHERLAGMVRQAAGFYRLAVAFVAAPGAVDPFEAVTAALPHANADRVLLLSPSVLPTERGWLSALERAIRKPNAVGSVALAPVMASPTLLYEDHSIRFAGIVAVEGPGGAVTYERRFAGYPRDWLKEQEASAVDAASADCAMLPRELLVRAMADGGRYLGSEPKGLDLCLRVRAVGGTCLWLPKLRLVAVDEQTRTVSDPRLERMSALVDQWSFAERWKASIAA
>NZ_CP012403.1|WP_045584050.1|205351_206665_-|glycosyltransferase-family-4-protein
MSKTKRALIISHGHPSFSLGGGEVASYNLHNGLHDLPGWESHYLARVAPPIAQHRGSALMALRQKEREVLYYANDYDHFRLSNRNLPGLEKDFVRYVRDLQPDVVNFHHFLGLGIETIQAVRQALPRVPIVVTLHEYLSICHHHGQMVKTSRNALCYRASPADCAGCFPHIGEAEFFKRELFLKTFLEQADFYVSPSNFLIDRYVDWGLPREKFRRIENGLTIEGIAPPRPVVRGGKRNRFAFFGQLTEFKGAHLLVEAVSRLSEKAWGEDGALMIFGGNLERQPEAYQKRFNDAVEKAGNRVRFYGSYRSAELPGLMKDVDWMIIPSIWWENSPVVIQEAFLHGRPIIASNIGGMAEKVTHGVDGLHFRNGSVEDLVDRMTEALITPELWDRLRLRIRRPIDRAECARQHAELYDALLAAGGSAPSMPERAVAQRP
>NZ_CP012403.1|WP_045584049.1|203965_205153_-|polysaccharide-pyruvyl-transferase-family-protein
MANILVMIPSGEVYDHDCVRWYSYQDIQRSISHYHNIGDAFVFDSSLKLLTYDKLDVLEIREFRQDAVDRINAEYDYVFLRGSNYIHDSMEWPAATLQVLAKLRIPVIAFGVGAQAPATGKLTLTEESKRIWRMIADKSATLGVRGTYTAEVLWDLGIKNTRIVGCPTAFRNRDPELRIDLPSLDSVRKVGITMRREVSKHYSPDVRKYLERHRDFVKDISCRFDTVLMMQGEVEEKKLLWGTDEQKAEAWSQLHDSAWLKQWYFDDEMDALYRNRLWYSDVVADYEALVRSKDLVLGYRLHGNLMALSNATPSVYFSYDSRTAEFAETFAIPCYNVYSDKPFVLEEYWDQGLFEKFNRTYYQRYRDMREFLDENYVPHRMPSHAIRKTVDRKAA
>NZ_CP012403.1|WP_045584048.1|203117_203924_-|hypothetical-protein
MSTTARIVELRESSPAADPPDALQAAAIVGHIDAVQGDRIFGWAWDGNHPTDRLEVELRLERDGGPPQTLARVLADRMRADLAGGGIGDGAHAFEAELIFPEGSDPSRVVAVVCAPATGETATFVQPNPEDQRLDQRLDRLLGPHLRRIDERIDALRRDQRQIAAAQQTVGRLLRDAGDGVAALRTDAARAETASGERTDALAEALRDLTERVGGLEVFLMRMDQTLRGMDNGSAEKGGGSGTFPLLTVLGSTAGAFLAVLAGWLMLH
>NZ_CP012403.1|WP_052710211.1|199556_203009_-|DEAD/DEAH-box-helicase
MLDGAPIADPSPVSSDPGSAMSSLTVRSEGELAVRLAALTRRFVGGSASNRQGDVLLLARSDGRAHRLARLTGDLAPDLDIVLLPIEETAAGYRTAPSRAVLGRRAAGLMQLVEGAGAARGRLIVASADLALQRLPPPQAWRGTRFPLSRGMAYDEPTWRGWFVRAGYVLDERVDEPGEAAIRGAVVEVFPGDGERPVRCDIAAGVVRELRLFDPASQRSIAPIDGITLCPVTDLFLGPETLDRLTTSLAGLGYEMPEGLREALEQGHRPYGFDFQLPNVFDDCPLLLDLLPEAMLVLDAGARDRIEARADDLADVALDRRIRRDDACILPVPALERRLIGVDGLESMLAAREVVQVDFIPSPAMEPVGTERMLLRRAGALIREGRPVLLAAAGSCEAERLAERASAFLGAGLGRPVTRLGRWPDPPLEGGDCAVLNLHAADGFDCDGMTVLVAPRHAEEGGRGAPARTPLAPSDLATGDFVVHLDYGIGRLVGLETIERNESTADFLVLEYAHDDRLLVPTADFDRLWRHGSADTGARLDSLKNAHWLDRRAVLEAEIVETARGILRAARRSARETAPVIDPPADRMRRFGARFGFDPTEGQRRAIHAVLEAMRSGHPMDHLVCADVGYGKTEVALRATAAVAFAGHQVAVMAPTTVLARQHFEVFRRRFAGFGIRVEPLIGAMPKAEVEQVQAGLADGEVDVVVGTHALLSKRLRFKRLGLMVVDEEQRFGAEQKQALKRRTRGAHSLALSATPIPRTLQGALAGLRGLSIIDTPPAQRRPVRTAVTPRDAATVRAALLRELGRGGQAFCVTPRIADLCELEEWVRGLVPDARVAVAHGRMAAAALDDAVMGFVDGKSDILVATPIIESGIDIPRANTLLLFRPHLFGLGQLHQLRGRVGRSTVQGYAYLLTDPEQPLEERAARRLGSLEVIESLGGGFVLSMLDLDQRGAGDLLGKDQSGHLRAVGTELYQRILADALRILRHRSDERWDPEVTVAVPHFIPAAYIPEEELRIGLHRRIARTGDASELDALREEMEDRFGPLPDPVQRLLAIAALRCRCRALGIASLGCGPAGVAATLRGNRAVARAATLAKRSRGLLHAQDDRATAALEAFDADARLANAVRVLDSIEATVNKAKQRRRTDEPTEI
>NZ_CP012403.1|WP_158511085.1|198664_198844_-|transposase
MAPRRRRWSQTAKEQLVAETCEPGMSVSLVARRRGGDPSLLFRWRRQMLGKRCVTTHPT
>NZ_CP012403.1|WP_045581642.1|198039_198423_-|IS66-family-insertion-sequence-hypothetical-protein
MTASAPLVMEIVEAAPRRRYWSQAEKEQLVAETCEPGVSVSLVARRRGVDPSLLFRWRRQMLTPAEPPPIFAPVEVADTTSALPLTPPTPCGASMIEIELAGGRRLRVGRDVDAEALRRVISVLERS
>NZ_CP012403.1|WP_045584055.1|214996_216334_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MSDSPAIWTATIDVMPAEPSLRNTALAGALAVLVGFGGFLGWACTADLDSAALAAGTVMVESHRKTISHLEGGILRDLLVKDGDLVQAGQVLLRMDSTQSQAVVAQLQGQHWTALARLGRLRAEQSDSPAPLFAADLVKAAHDNPVAAEALAVEERLFRSRRDSYEAQLGIQRRQISQLRDQIVALEAQRVATADRLRYTEDEQRVVQGLLAKGYERRPRLLELQRNVADSQGRLGELMANKSKAEQAIAAAELEMINIGNTRRSGVSTDLQTAQAAVSDLSERLRSADDVLLRQAVTAPQAGRITGLKFFTPGGVVPAGAGILDIVPQDDAMIVEARVSPHDVQNVEVGSKAMVKLTGYRQRAVPPVAGQVVALSADQLEDERTGTFYFAVRISMDATELKALPGVELHPGMPAEVMIHGHARRAIEYFLTPLTDGLQRAFREK
>NZ_CP012403.1|WP_052710291.1|216330_218055_-|type-I-secretion-system-permease/ATPase
MSSVDRPLLTQAYRKIGQGLLLAGILSLFVNILMLVVPLFTMQVYDRVMSSRSLETLTMLAIIAVGALALYGVLDFIRARAFLVTSAVIAHRFNVPALEASIVDALSGGPRNAAQTMRDLNDLRGFMTSSAVTAPLELAWAPIFLAILFLLHPVYGFLAIGSALILLVMGVLTDALTRRPMAQANEASARVFADIAGTVRHAEAIEAMGMLPALARRWQSAQSGSAGMIDRGATMSRGLAAASRSLRLMLQVGVIAAGATLVIDNLVTPGSMMAAGLITGRLLHPFEQMVDGWRQWVKALEAHRRIRDLLNNGASARSTMPLPAPHGTLAVDRVSHVPAGLSRPVLRNVSFAAEAGEVLGIIGPSGAGKSTLARLLVGVWQPTAGGIYLDGASTYLWERESFGKYVGYVPQSVALLDGTIGENIARMANADPAEIVRAARLAGVHEMIGRLPFGYDTPVGESAFSLSGGQRQRIALARALFGRPRLLVLDEPNSNLDHEGEQALLAAVHKVKAEGTTVVMIAHRPSIVAVADKLVVMKDGAVEHFGARGDVLKLVQPGGTPTGVARLVRSGEQR
>NZ_CP012403.1|WP_045584056.1|218609_219623_+|UDP-glucose-4-epimerase-GalE
MTIPKTILVTGGAGYVGSHCVAELLDHGNRVVVFDNLRQGHAAAVPPEAAFVQADLADEAALARVFSQWRFDAVFHFAALSVVGESMRDPHAYLHGNSVTSLNLIRAAVKAGVMKLVFSSTANLFGSPKRIPIDEDEAVDPGSPYGESKYMIERALHWADRCHGLRSACLRYFNAAGAHPSGRLGEDHSPETHLIPLVMDAATGTRPHIEIFGDDYETRDGTCIRDYIHVCDLADAHLRVLDVLDERSVRYNLGNGTGYSVREVIGSVERITGRTVPVKIGPRRPGDLPVLIASSERIRRDLGWQPRFPDLDSIVGSAWAWRNANPQGFRGIAAAAE
>NZ_CP012403.1|WP_045584057.1|219684_220242_+|winged-helix-DNA-binding-protein
MSNLNWDDDTPEPAPGEKASAQASGKPADVLDLADFHGMARLIERMHRRYLDVVRVGLSRQGVEDIGPVQALMVMLIGEDELSVRDLMERGYYLGSNASYSLKILVDAGYINRAANQRDRRTARLQLTDKGRELWECLRRMEQAQAEALVRNETEVRDLKASYRTLRRLDRLWGDMIRYSCLDFD
>NZ_CP012403.1|WP_045584058.1|220256_221480_+|DUF2336-domain-containing-protein
MPQPDAPMPDAPIPDALPPNSLSSKDVERLLASPTAQTRIETMSKLFQDLEAGTLSPAERSLAIEVVHCFAGDAQVAVREAVAWQLRNSPLLTGDLAERLVRDVGRVAFPILRDAAGLTDDLLLDVLSDPDSGKHVAVASRSRVSARVSGAIAERGNVVAVTALLRNDGAELPDSAMSRALDRFGRVRMVSEAAATRPGLSLAMVERVVAFVSDSMRTTLMQAHGLSRELVERLVERGREAATMRLLRPVLRGAEDIEAVIQWLHANRRLTPVLLFRALCAGDVSLFVSGMALRAAIPPDNARRLAWDDGELGMAALLKKAVVAPGLLQPFQVAVGVAKRLGYEGAEASREDFQAEVISELFTACTPTNDWMVDDLLLQLFDQKSDEVIDRALDQAGLPFSPLRTMQ
>NZ_CP012403.1|WP_045584059.1|221489_222395_-|LysR-family-transcriptional-regulator
MSKPSHTLPAVADADIRLLRVFLTVVECGGFSAAEVELNISRAAISQHMADLERRLGLTLCRRGRGGFRLTEEGQLAHEAALRLLAGLESFRSEINAAHGRLRGELNIGITDNLVTMPRMRVTNALRGLKREAPEVRVNIRMIPPNEIERGVLDGRLHVGVVPDRRALPGLERVTLYEEESRLYCGRGHPLFDAPTGTVTREAVEAADAVAPTQAQPPHALTATATATDREGVAFLLLTGCYIGFLPVHYAAQWVERGTMRALLPDSHHYRVGFSAVTKKGVPPNLVLERFMTLLERPDEG
>NZ_CP012403.1|WP_045584060.1|222512_223889_+|aspartate-aminotransferase-family-protein
MAPLDNDFEHGNPGFGTDRAAGVTREELDAHWMPFTANREFKKNPRMMMKAEGAWYWDAQGRKIYDSLSGLWCSGAGHCRSEIAEAVARQIGTLDYSPAFQYGHPAAFKLAHKLASMTPAGLDHVFFVNSGSEAADTSLKLARAYWRMKGQPAKTKLIGRVKGYHGVNFGGTSLGGIVGNRKLFGTGVDADHLPHTLLPQNVFTKGMPDEGAHLADALEDLVALHDASNIAAVVVEPMAGSAGVLPPPKGYLQRLREICTKHGILLIFDEVITGFGRMGTAFGADYFGVVPDIMNVAKGLTNGAVPMGAVVASHEIYQTFMDNGGPEYLVEFPHGYTYSAHPVACAAGLAALELFEREKLADKAAALMPHFEDLIHGLKGLKNVADIRNCGLAGAVQIAPLPGEPARRPYEIAMKCWDAGYYVRYGGDTLQFGPHFISEREDLDRLFNVVADAIQATA
>NZ_CP012403.1|WP_045584061.1|224046_225546_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MPIVPHLIGGKTDAPAGSRTADIVNPATGEVTGQVALAGRKTVEEAIAAAEAAFPGWRATPPAKRARVMFRFKQLLEENAERVCALITQEHGKVLDDALGELTRGIENVEYACGVPELLKGEFSKNVGPAIDSWSEFQPLGVVAGITPFNFPAMVPLWMYPIAIACGNTFILKPSERDPSAALLVAQLAEQAGLPPGVLNVVNGDKEAVDTLLTDPRVQGVSFVGSTPIAEYVYATASAHGKRVQALGGAKNHAIVMPDADLDNAVSALMGAAYGSCGERCMAISVVVAVGDEVADRLVEKLSVALRALKVGAGTSAGCEMGPLVTRAHHDKVRAYVDQGVSEGAELVVDGRGLVVPGHENGNFLGGCLFDRVTPEMTIYREEIFGPVLCLVRVKTMQEGMDLIDGHEYGNGTCLFTRDGEAARYFSDMIKVGMVGINVPLPVPVAYHSFGGWKRSLFGDLSAYGPDGVRFYTRRKTITQRWPTGGLREGAQFAFPSMK
>NZ_CP012403.1|WP_052710212.1|225596_226949_-|ANTAR-domain-containing-protein
MENERGTGDGGTGAMALRFLRVARLCRIRDVERLLAVGALVRDIGGLIHVLQAERGASSIYLGSCGKRFATDRAGRVAEALALEAVLRDRLDHLDEQLDRMSSGARFYGRVAGALQALDRLPALRDQVASLALVPQDSVKAFTDVIGHLLAVLVEAADIAADPAISRALVALFNIVQGKEFAGQERATAGAGFSRGRFDGADHARLIQLIDAQNRAFRIFSEFADPAHTAAFRAALSDPAVTEVERMRAVALADGARHGELSGIAPEAWFEQATRRMDRMKTVEDRLTGDLRLLCEAKLAQARADLEQTDLEQAALHSPDAAMPVAMMLVDAGSPLPGGPSLPGQEDAGLFAPDGLPPRLMRSVLDVVQAQSQRLRDVSLELETAKAALNERKVIDRAKGLLMSTRNLSEEEAYKLIRKTAMNQNKRIIEVAEAILSMSDILRGVTTGGG
>NZ_CP012403.1|WP_144428316.1|227192_227408_+|hypothetical-protein
MTKNPFMSAWLSWANRATSHATGMWTAAAVSAAKRNQSAALKAMMTPPNSASTGGGAKNGAKPKRRSGPAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012403_2	2.1\|214344\|30\|NZ_CP012403\|CRISPRCasFinder	214344-214373	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	921508-921537	2	0.933
NZ_CP012403_1	1.1\|213939\|30\|NZ_CP012403\|CRISPRCasFinder	213939-213968	30	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	194682-194711	3	0.9
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	294180-294209	4	0.867
NZ_CP012403_1	1.1\|213939\|30\|NZ_CP012403\|CRISPRCasFinder	213939-213968	30	NZ_CP044049	Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence	192162-192191	5	0.833
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1813744-1813773	5	0.833
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1820832-1820861	5	0.833
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	2164683-2164712	5	0.833
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	194736-194765	5	0.833
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	2237345-2237374	5	0.833
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1002282-1002311	5	0.833
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	377274-377303	5	0.833
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NC_014030	Salinibacter ruber M8 plasmid pSR61, complete sequence	6831-6860	5	0.833
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP029359	Azospirillum sp. CFH 70021 plasmid unnamed4	76471-76500	5	0.833
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP029359	Azospirillum sp. CFH 70021 plasmid unnamed4	76579-76608	5	0.833
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	CP003956	Rhodococcus opacus PD630 plasmid 7, complete sequence	35904-35933	5	0.833
NZ_CP012403_1	1.5\|214155\|30\|NZ_CP012403\|CRISPRCasFinder	214155-214184	30	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	46972-47001	5	0.833
NZ_CP012403_1	1.1\|213939\|30\|NZ_CP012403\|CRISPRCasFinder	213939-213968	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	413215-413244	6	0.8
NZ_CP012403_1	1.1\|213939\|30\|NZ_CP012403\|CRISPRCasFinder	213939-213968	30	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	314982-315011	6	0.8
NZ_CP012403_1	1.1\|213939\|30\|NZ_CP012403\|CRISPRCasFinder	213939-213968	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	148158-148187	6	0.8
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NC_007100	Pseudomonas aeruginosa plasmid Rms149, complete sequence	29721-29750	6	0.8
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	148212-148241	6	0.8
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NC_018580	Gordonia sp. KTR9 plasmid pGKT2, complete sequence	59621-59650	6	0.8
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	560380-560409	6	0.8
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	592756-592785	6	0.8
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NC_048047	Caulobacter phage CcrBL9, complete genome	252510-252539	6	0.8
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	227457-227486	6	0.8
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	112928-112957	6	0.8
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1644842-1644871	6	0.8
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1621304-1621333	6	0.8
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	63424-63453	6	0.8
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	194513-194542	6	0.8
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	380841-380870	6	0.8
NZ_CP012403_2	2.1\|214344\|30\|NZ_CP012403\|CRISPRCasFinder	214344-214373	30	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1409056-1409085	6	0.8
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NZ_CP024308	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence	152032-152061	7	0.767
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NZ_CP030128	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence	336990-337019	7	0.767
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	120476-120505	7	0.767
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	449680-449709	7	0.767
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NZ_CP006993	Methylobacterium sp. AMS5 plasmid pAMS5a, complete sequence	92696-92725	7	0.767
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	MK580972	Stenotrophomonas phage YB07, complete genome	103028-103057	7	0.767
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	294288-294317	7	0.767
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	713608-713637	7	0.767
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	352905-352934	7	0.767
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	695702-695731	7	0.767
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	693188-693217	7	0.767
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	691376-691405	7	0.767
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	115245-115274	7	0.767
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	228462-228491	7	0.767
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	247792-247821	7	0.767
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	292446-292475	7	0.767
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1590464-1590493	7	0.767
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	37571-37600	7	0.767
NZ_CP012403_1	1.5\|214155\|30\|NZ_CP012403\|CRISPRCasFinder	214155-214184	30	NZ_CP035502	Sphingosinicella sp. BN140058 plasmid p1, complete sequence	191107-191136	7	0.767
NZ_CP012403_1	1.5\|214155\|30\|NZ_CP012403\|CRISPRCasFinder	214155-214184	30	NC_009426	Novosphingobium aromaticivorans DSM 12444 plasmid pNL1, complete sequence	183649-183678	7	0.767
NZ_CP012403_1	1.5\|214155\|30\|NZ_CP012403\|CRISPRCasFinder	214155-214184	30	NC_002033	Novosphingobium aromaticivorans plasmid pNL1, complete sequence	127037-127066	7	0.767
NZ_CP012403_1	1.5\|214155\|30\|NZ_CP012403\|CRISPRCasFinder	214155-214184	30	NZ_AP014580	Burkholderia sp. RPE67 plasmid p2, complete sequence	172460-172489	7	0.767
NZ_CP012403_1	1.5\|214155\|30\|NZ_CP012403\|CRISPRCasFinder	214155-214184	30	GU911304	Burkholderia phage KL3, complete genome	6626-6655	7	0.767
NZ_CP012403_1	1.5\|214155\|30\|NZ_CP012403\|CRISPRCasFinder	214155-214184	30	NC_010311	Streptomyces sp. HK1 plasmid pSHK1, complete sequence	128643-128672	7	0.767
NZ_CP012403_1	1.5\|214155\|30\|NZ_CP012403\|CRISPRCasFinder	214155-214184	30	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	143210-143239	7	0.767
NZ_CP012403_1	1.5\|214155\|30\|NZ_CP012403\|CRISPRCasFinder	214155-214184	30	NZ_CP026489	Streptomyces sp. 604F plasmid unnamed, complete sequence	132458-132487	7	0.767
NZ_CP012403_1	1.5\|214155\|30\|NZ_CP012403\|CRISPRCasFinder	214155-214184	30	NZ_CP033228	Sphingobium yanoikuyae strain SJTF8 plasmid pF2, complete sequence	152666-152695	7	0.767
NZ_CP012403_2	2.1\|214344\|30\|NZ_CP012403\|CRISPRCasFinder	214344-214373	30	NZ_CP016368	Phaeobacter porticola strain P97 plasmid pP97_d, complete sequence	18372-18401	7	0.767
NZ_CP012403_1	1.1\|213939\|30\|NZ_CP012403\|CRISPRCasFinder	213939-213968	30	NZ_CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	4816-4845	8	0.733
NZ_CP012403_1	1.1\|213939\|30\|NZ_CP012403\|CRISPRCasFinder	213939-213968	30	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	81624-81653	8	0.733
NZ_CP012403_1	1.1\|213939\|30\|NZ_CP012403\|CRISPRCasFinder	213939-213968	30	NC_008386	Roseobacter denitrificans OCh 114 plasmid pTB1, complete sequence	58524-58553	8	0.733
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	580763-580792	8	0.733
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2350177-2350206	8	0.733
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NZ_CP007256	Rhodococcus erythropolis R138 plasmid pCRE138, complete sequence	19218-19247	8	0.733
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NZ_CP041205	Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence	137332-137361	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	299949-299978	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP014802	Salipiger profundus strain JLT2016 plasmid pTPRO6, complete sequence	12750-12779	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	72677-72706	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	392569-392598	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP049358	Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence	23236-23265	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	710205-710234	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	774609-774638	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	444387-444416	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP031159	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdA, complete sequence	16970-16999	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	1180429-1180458	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP007257	Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence	147764-147793	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	1086065-1086094	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	1186014-1186043	8	0.733
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP016620	Microvirga ossetica strain V5/3m plasmid unnamed4, complete sequence	190263-190292	8	0.733
NZ_CP012403_1	1.5\|214155\|30\|NZ_CP012403\|CRISPRCasFinder	214155-214184	30	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	1081708-1081737	8	0.733
NZ_CP012403_2	2.1\|214344\|30\|NZ_CP012403\|CRISPRCasFinder	214344-214373	30	NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	35246-35275	8	0.733
NZ_CP012403_2	2.1\|214344\|30\|NZ_CP012403\|CRISPRCasFinder	214344-214373	30	NZ_CP020445	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence	149222-149251	8	0.733
NZ_CP012403_2	2.1\|214344\|30\|NZ_CP012403\|CRISPRCasFinder	214344-214373	30	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	161749-161778	8	0.733
NZ_CP012403_2	2.1\|214344\|30\|NZ_CP012403\|CRISPRCasFinder	214344-214373	30	NC_023142	Phaeobacter gallaeciensis DSM 26640 plasmid pGal_F69, complete sequence	18169-18198	8	0.733
NZ_CP012403_2	2.1\|214344\|30\|NZ_CP012403\|CRISPRCasFinder	214344-214373	30	NZ_CP010732	Phaeobacter inhibens strain P88 plasmid pP88_g, complete sequence	18145-18174	8	0.733
NZ_CP012403_2	2.1\|214344\|30\|NZ_CP012403\|CRISPRCasFinder	214344-214373	30	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	258311-258340	8	0.733
NZ_CP012403_2	2.1\|214344\|30\|NZ_CP012403\|CRISPRCasFinder	214344-214373	30	NZ_CP010593	Phaeobacter gallaeciensis strain P11 plasmid pP11_e, complete sequence	18166-18195	8	0.733
NZ_CP012403_1	1.1\|213939\|30\|NZ_CP012403\|CRISPRCasFinder	213939-213968	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	634309-634338	9	0.7
NZ_CP012403_1	1.1\|213939\|30\|NZ_CP012403\|CRISPRCasFinder	213939-213968	30	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	93885-93914	9	0.7
NZ_CP012403_1	1.2\|213993\|30\|NZ_CP012403\|CRISPRCasFinder	213993-214022	30	NZ_CP024445	Moraxella osloensis strain NP7 plasmid pNP7-2, complete sequence	39973-40002	9	0.7
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NZ_HG938357	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141b, complete sequence	14577-14606	9	0.7
NZ_CP012403_1	1.3\|214047\|30\|NZ_CP012403\|CRISPRCasFinder	214047-214076	30	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	515578-515607	9	0.7
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP050106	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence	273319-273348	9	0.7
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NC_011143	Phenylobacterium zucineum HLK1 plasmid, complete sequence	188749-188778	9	0.7
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP025431	Paracoccus zhejiangensis strain J6 plasmid pPZ01, complete sequence	252757-252786	9	0.7
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	273503-273532	9	0.7
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP030763	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence	722750-722779	9	0.7
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_CP050088	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence	411361-411390	9	0.7
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	239500-239529	9	0.7
NZ_CP012403_1	1.4\|214101\|30\|NZ_CP012403\|CRISPRCasFinder	214101-214130	30	MN871455	UNVERIFIED: Pseudomonas phage Pa-B, complete genome	9190-9219	9	0.7
NZ_CP012403_1	1.5\|214155\|30\|NZ_CP012403\|CRISPRCasFinder	214155-214184	30	NZ_LR594692	Variovorax sp. WDL1 plasmid 4	4898-4927	9	0.7

1. spacer 2.1|214344|30|NZ_CP012403|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 2, identity: 0.933

gagcagggtgtcgtttccgttgccccccag	CRISPR spacer
aagcagagtgtcgtttccgttgccccccag	Protospacer
.*****.***********************

2. spacer 1.1|213939|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.9

ttcaagtcggtcgttgccttcgtcgccgaa	CRISPR spacer
ttccagacggtcgttgccttcgtcgccgga	Protospacer
*** ** *********************.*

3. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 4, identity: 0.867

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cgacaggaagtcggcgccgtcgccacccga	Protospacer
 * ***** *************** *****

4. spacer 1.1|213939|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP044049 (Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

ttcaagtcggtcgttgccttcgtcgccgaa	CRISPR spacer
tacaagtcggtcggtgacttcgtcgccgtt	Protospacer
* *********** ** ***********

5. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.833

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
gatcagcctgtcgttgccattaccgccggt	Protospacer
* ***** *********** ********

6. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.833

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
gatcagcctgtcgttgccattaccgccggt	Protospacer
* ***** *********** ********

7. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.833

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
ggtcagcgtgtcgtcgccagtaccgccgga	Protospacer
* *****.******.************* .

8. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.833

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
gatcagcacgtcgttgccggtaccgccgaa	Protospacer
* ******.*********.********* .

9. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.833

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
ggtcagcgtgtcgtcgccagtaccgccgga	Protospacer
* *****.******.************* .

10. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 5, identity: 0.833

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
ggtcagcgtgtcgttgccagtgccgccgga	Protospacer
* *****.*************.****** .

11. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 5, identity: 0.833

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
gatcagcatgtcgttgccggtgccgccatg	Protospacer
* ****************.**.*****..*

12. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NC_014030 (Salinibacter ruber M8 plasmid pSR61, complete sequence) position: , mismatch: 5, identity: 0.833

gtccaatac--gtcgtcgtgaccgccgccgaa	CRISPR spacer
--tcaatgcttgtcgtcgggaccgccgccgaa	Protospacer
  .****.*  ******* *************

13. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP029359 (Azospirillum sp. CFH 70021 plasmid unnamed4) position: , mismatch: 5, identity: 0.833

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggacaggatgtcgtcgccgtcgcccccgaa	Protospacer
.* ********** ************* .*

14. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP029359 (Azospirillum sp. CFH 70021 plasmid unnamed4) position: , mismatch: 5, identity: 0.833

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggacaggatgtcgtcgccgtcgcccccgaa	Protospacer
.* ********** ************* .*

15. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to CP003956 (Rhodococcus opacus PD630 plasmid 7, complete sequence) position: , mismatch: 5, identity: 0.833

agtca-ggatgtcggcgccgtcgccccccga	CRISPR spacer
-gtcattcatgtcggtgccgtcgcccgccga	Protospacer
 ****   *******.********** ****

16. spacer 1.5|214155|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.833

gtccagc-acgtcgcggccggcaccaccgat	CRISPR spacer
-ctcagcaacgacgcggccagcaccaccgat	Protospacer
 ..**** *** *******.***********

17. spacer 1.1|213939|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 6, identity: 0.8

ttcaagtcggtcgttgccttcgtcgccgaa	CRISPR spacer
atcgcgacgggcgttgccttcgtcgccgag	Protospacer
 **. * *** ******************.

18. spacer 1.1|213939|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 6, identity: 0.8

ttcaagtcggtcgttgccttcgtcgccgaa	CRISPR spacer
atcgcgacgggcgttgccttcgtcgccgag	Protospacer
 **. * *** ******************.

19. spacer 1.1|213939|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 6, identity: 0.8

ttcaagtcggtcgttgccttcgtcgccgaa	CRISPR spacer
gtccagaatgtcgttgccgtcgtcgccgaa	Protospacer
 ** **   ********* ***********

20. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NC_007100 (Pseudomonas aeruginosa plasmid Rms149, complete sequence) position: , mismatch: 6, identity: 0.8

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
gaccagcgtgtcgttgcccgtaccgccgtc	Protospacer
* .****.********** *********.

21. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 6, identity: 0.8

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
ggacagcatgtcgttgccggtgccgccatg	Protospacer
*  ***************.**.*****..*

22. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NC_018580 (Gordonia sp. KTR9 plasmid pGKT2, complete sequence) position: , mismatch: 6, identity: 0.8

---gtccaatacgtcgtcgtgaccgccgccgaa	CRISPR spacer
ctggtc---tttgtcgtcgtcaccgccgccgaa	Protospacer
   ***   * .******** ************

23. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 6, identity: 0.8

gtccaatacgtcgtcgtgaccgccgccgaa	CRISPR spacer
ggcgactacgtcgtcctgaccgtcgccgac	Protospacer
* * * ********* ******.******

24. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 6, identity: 0.8

gtccaatacgtcgtcgtgaccgccgccgaa	CRISPR spacer
gacggagacgtcgtcatgaccggcgccgaa	Protospacer
* * .* ********.****** *******

25. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 6, identity: 0.8

gtccaata-cgtcgtcgtgaccgccgccgaa	CRISPR spacer
-accaccatcgtcgtcgagaccgccgccgat	Protospacer
  *** .* ******** ************

26. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 6, identity: 0.8

agtcaggatgtcggcgccgtcgcc----ccccga	CRISPR spacer
gttcaggatgtcggcgccgtcgccatagcc----	Protospacer
. **********************    **

27. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.8

agtcaggatgtcggcgccgtcgcc----ccccga	CRISPR spacer
gttcaggatgtcggcgccgtcgccatagcc----	Protospacer
. **********************    **

28. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 6, identity: 0.8

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
aaccaggatttcggcgccggcgccccccag	Protospacer
*..****** ********* ********..

29. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 6, identity: 0.8

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
aaccaggatttcggcgccggcgccccccag	Protospacer
*..****** ********* ********..

30. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.8

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
tgtcaggatgttggcgccgtcgccgcgcag	Protospacer
 **********.************ * *..

31. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 6, identity: 0.8

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggtcaggctgtcggcgccgtcgaccacggt	Protospacer
.****** ************** ** * *

32. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 6, identity: 0.8

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggacaggctgtcggcgccgtcgccaccggt	Protospacer
.* **** **************** ** *

33. spacer 2.1|214344|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.8

gagcagggtgtcgtttccgttgccccccag	CRISPR spacer
caacacggtgtcgtttccgttgccgccgaa	Protospacer
 *.** ****************** ** *.

34. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP024308 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence) position: , mismatch: 7, identity: 0.767

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
attgatcacgtcgttgccagtgccgccgct	Protospacer
..* * **.************.*******

35. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP030128 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
cgtgaccttgtcgttgccagcaccgccgct	Protospacer
  * * * ************.********

36. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 7, identity: 0.767

--gtccaatacgtcgtcgtgaccgccgccgaa	CRISPR spacer
cgggcgggt--gtcgtcgtgaacgccgccgaa	Protospacer
  * * ..*  ********** **********

37. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

gtccaatacgtcgtcgtgaccgccgccgaa	CRISPR spacer
ggagactacgtcgtcctgaccgtcgccgac	Protospacer
*   * ********* ******.******

38. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP006993 (Methylobacterium sp. AMS5 plasmid pAMS5a, complete sequence) position: , mismatch: 7, identity: 0.767

gtccaa---tacgtcgtcgtgaccgccgccgaa	CRISPR spacer
---cgaggctacgtcgtcgtgaccccagccgat	Protospacer
   *.*   *************** * *****

39. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to MK580972 (Stenotrophomonas phage YB07, complete genome) position: , mismatch: 7, identity: 0.767

gtccaatacgtcgtcgtgaccgccgccgaa	CRISPR spacer
aacgcaaacatcgtcctgaccgccgccgaa	Protospacer
. *  * **.***** **************

40. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 7, identity: 0.767

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cttcagaatgtcgtcgccgtcgcccccttc	Protospacer
  ****.****** *************.

41. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cttcagaatgtcggcgccgtcgccaccgtt	Protospacer
  ****.***************** **

42. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 7, identity: 0.767

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cttcagaatgtcggcgccgtcgccgccgtt	Protospacer
  ****.***************** **

43. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cttcagaatgtcggcgccgtcgccgccgtt	Protospacer
  ****.***************** **

44. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cttcagaatgtcggcgccgtcgccgccgtt	Protospacer
  ****.***************** **

45. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cttcagaatgtcggcgccgtcgccgccgtt	Protospacer
  ****.***************** **

46. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ttccagtatgtcggcgccgtcgccgccggt	Protospacer
  .*** ***************** ** *

47. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 7, identity: 0.767

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
atccaggatgtcgtcgccgtcgccgccgat	Protospacer
* .********** ********** ** .

48. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cttcaggatgttggcgccgtcgccgcgcag	Protospacer
  *********.************ * *..

49. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 7, identity: 0.767

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cttcaggatgttggcgccgtcgccgcgcag	Protospacer
  *********.************ * *..

50. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
tgacagaatgtcggcgccggcgccccacac	Protospacer
 * ***.************ ****** *.

51. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 7, identity: 0.767

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
tgggataatttcggcgccatcgccccccga	Protospacer
 *  * .** ********.***********

52. spacer 1.5|214155|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP035502 (Sphingosinicella sp. BN140058 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

gtccagcacgtcgcggccggcaccaccgat	CRISPR spacer
ctccagcacgtcgcggctggcacacctgcg	Protospacer
 ****************.*****  *.*

53. spacer 1.5|214155|30|NZ_CP012403|CRISPRCasFinder matches to NC_009426 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL1, complete sequence) position: , mismatch: 7, identity: 0.767

gtccagcacgtcgcggccggcaccaccgat	CRISPR spacer
ctcgtcgacgtcgcggcaggcaccatcgat	Protospacer
 **    ********** *******.****

54. spacer 1.5|214155|30|NZ_CP012403|CRISPRCasFinder matches to NC_002033 (Novosphingobium aromaticivorans plasmid pNL1, complete sequence) position: , mismatch: 7, identity: 0.767

gtccagcacgtcgcggccggcaccaccgat	CRISPR spacer
ctcgtcgacgtcgcggcaggcaccatcgat	Protospacer
 **    ********** *******.****

55. spacer 1.5|214155|30|NZ_CP012403|CRISPRCasFinder matches to NZ_AP014580 (Burkholderia sp. RPE67 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

gtccagcacgtcgcggccggcaccaccgat	CRISPR spacer
gtcgagcacgtcgcggccggaacggcagca	Protospacer
*** **************** ** .* *

56. spacer 1.5|214155|30|NZ_CP012403|CRISPRCasFinder matches to GU911304 (Burkholderia phage KL3, complete genome) position: , mismatch: 7, identity: 0.767

gtccagcacgtcgcggccggcaccaccgat	CRISPR spacer
ttccagcacgtcgcggtcggcatccgagaa	Protospacer
 ***************.*****.*   **

57. spacer 1.5|214155|30|NZ_CP012403|CRISPRCasFinder matches to NC_010311 (Streptomyces sp. HK1 plasmid pSHK1, complete sequence) position: , mismatch: 7, identity: 0.767

gtccagcacgtcgcggccggcaccaccgat	CRISPR spacer
gtccaggacgtcgcggccggcggcgcctcg	Protospacer
****** **************. *.**

58. spacer 1.5|214155|30|NZ_CP012403|CRISPRCasFinder matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 7, identity: 0.767

-gtccagcacgtcgcggccggcaccaccgat	CRISPR spacer
caggcggcg-gtcgcggccggcaacaccgat	Protospacer
 .  *.**. ************* *******

59. spacer 1.5|214155|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP026489 (Streptomyces sp. 604F plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtccagcacgtcgcggccggcaccaccgat	CRISPR spacer
gtccaggacgtcgcggccggcggcgcctcg	Protospacer
****** **************. *.**

60. spacer 1.5|214155|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP033228 (Sphingobium yanoikuyae strain SJTF8 plasmid pF2, complete sequence) position: , mismatch: 7, identity: 0.767

gtccagcacgtcgcggccggcaccaccgat	CRISPR spacer
ctcgtcgacgtcgcggcaggcaccatcgat	Protospacer
 **    ********** *******.****

61. spacer 2.1|214344|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP016368 (Phaeobacter porticola strain P97 plasmid pP97_d, complete sequence) position: , mismatch: 7, identity: 0.767

gagcagggtgtcgtttccgttgccccccag	CRISPR spacer
agtcagggtgtcgttgccgttgccgccgcg	Protospacer
.. ************ ******** **  *

62. spacer 1.1|213939|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP027406 (Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ttcaagtcggtcgttgccttcgtcgccgaa	CRISPR spacer
gaaaataatgtcattgccttcgtcgccgaa	Protospacer
   **    ***.*****************

63. spacer 1.1|213939|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 8, identity: 0.733

ttcaagtcggtcgttgccttcgtcgccgaa	CRISPR spacer
gttgatgcggtcgttgccttcgccgccgtc	Protospacer
 *..*  ***************.*****

64. spacer 1.1|213939|30|NZ_CP012403|CRISPRCasFinder matches to NC_008386 (Roseobacter denitrificans OCh 114 plasmid pTB1, complete sequence) position: , mismatch: 8, identity: 0.733

ttcaagtcggtcgttgccttcgtcgccgaa	CRISPR spacer
gaaaataatgtcattgccttcgtcgccgaa	Protospacer
   **    ***.*****************

65. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 8, identity: 0.733

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
cgccatcatgtcgttgcctgtaccgccaac	Protospacer
  .** ************ ********.

66. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.733

gtccaatacgtcgtcgtgaccgccgccgaa	CRISPR spacer
ggcgtggtcgtcgccgtgaccgccgccgac	Protospacer
* *  .  *****.***************

67. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP007256 (Rhodococcus erythropolis R138 plasmid pCRE138, complete sequence) position: , mismatch: 8, identity: 0.733

gtccaatacgtcgtcgtgaccgccgccgaa	CRISPR spacer
catcggtgcgtcgtcgtcaccgccgccgag	Protospacer
  .*..*.********* ***********.

68. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 8, identity: 0.733

gtccaatacgtcgtcgtgaccgccgccgaa	CRISPR spacer
cggcaatacgtggtcgtgaccgccaacggt	Protospacer
   ******** ************. **.

69. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ccacaggaagtcggcgccgtcgccaccgtc	Protospacer
   ***** *************** **

70. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP014802 (Salipiger profundus strain JLT2016 plasmid pTPRO6, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
gaacaggatgtcgtcgccgtcgccgccgcc	Protospacer
.. ********** ********** **

71. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ccgcagaatgtcggcgccgtcgccgccgtt	Protospacer
   ***.***************** **

72. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
gcgcagaatgtcggcgccgtcgccgccgct	Protospacer
.  ***.***************** **

73. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP049358 (Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggtcacgatgtcggcgccgtcgtaggacgc	Protospacer
.**** ****************.    **

74. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggcgctgatgtcgccgccgtcgtcccccgc	Protospacer
.*.   ******* ********.******

75. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggtcacgatgtcgtcgccgtcgccggcatt	Protospacer
.**** ******* **********  *

76. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggtcacgatgtcgtcgccgtcgccggcatt	Protospacer
.**** ******* **********  *

77. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP031159 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdA, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggtcacgatgtcggcgccgtcgtaggacgc	Protospacer
.**** ****************.    **

78. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggcgctgatgtcgccgccgtcgtcccccgc	Protospacer
.*.   ******* ********.******

79. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP007257 (Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
atccacgatgtcggcgccgtcgcgccagag	Protospacer
* .** ***************** **  ..

80. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggcgctgatgtcgccgccgtcgtcccccgc	Protospacer
.*.   ******* ********.******

81. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggcgctgatgtcgccgccgtcgtcccccgc	Protospacer
.*.   ******* ********.******

82. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP016620 (Microvirga ossetica strain V5/3m plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
gatcaggatgtcggcgccttcgcgggcata	Protospacer
..**************** ****   *  *

83. spacer 1.5|214155|30|NZ_CP012403|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 8, identity: 0.733

gtccagcacgtcgcggccggcaccaccgat	CRISPR spacer
ttccagcccgtcgcggccggcatccagcac	Protospacer
 ****** **************.*    *.

84. spacer 2.1|214344|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP024426 (Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence) position: , mismatch: 8, identity: 0.733

gagcagggtgtcgtttccgttgccccccag	CRISPR spacer
atacagggtgtcgtttcccgtgcccccggc	Protospacer
. .***************  ******* .

85. spacer 2.1|214344|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP020445 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.733

gagcagggtgtcgtttccgttgccccccag	CRISPR spacer
atacagggtgtcgtttcccgtgcccccggc	Protospacer
. .***************  ******* .

86. spacer 2.1|214344|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gagcagggtgtcgtttccgttgccccccag	CRISPR spacer
atacagggtgtcgtttcccgtgcccccggc	Protospacer
. .***************  ******* .

87. spacer 2.1|214344|30|NZ_CP012403|CRISPRCasFinder matches to NC_023142 (Phaeobacter gallaeciensis DSM 26640 plasmid pGal_F69, complete sequence) position: , mismatch: 8, identity: 0.733

gagcagggtgtcgtttccgttgccccccag	CRISPR spacer
tttcagggtgtcgttaccgtcgcccccgct	Protospacer
   ************ ****.******

88. spacer 2.1|214344|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP010732 (Phaeobacter inhibens strain P88 plasmid pP88_g, complete sequence) position: , mismatch: 8, identity: 0.733

gagcagggtgtcgtttccgttgccccccag	CRISPR spacer
tttcagggtgtcgttaccgtcgcccccgct	Protospacer
   ************ ****.******

89. spacer 2.1|214344|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 8, identity: 0.733

gagcagggtgtcgtttccgttgccccccag	CRISPR spacer
atacagggtgtcgtttcccgtgcccccggc	Protospacer
. .***************  ******* .

90. spacer 2.1|214344|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP010593 (Phaeobacter gallaeciensis strain P11 plasmid pP11_e, complete sequence) position: , mismatch: 8, identity: 0.733

gagcagggtgtcgtttccgttgccccccag	CRISPR spacer
tttcagggtgtcgttaccgtcgcccccgct	Protospacer
   ************ ****.******

91. spacer 1.1|213939|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.7

ttcaagtcggtcgttgccttcgtcgccgaa	CRISPR spacer
gcggaaggtgtcgttgccttcgccgccgaa	Protospacer
 . .*.   *************.*******

92. spacer 1.1|213939|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 9, identity: 0.7

ttcaagtcggtcgttgccttcgtcgccgaa	CRISPR spacer
gcggaaggtgtcgttgccttcgccgccgaa	Protospacer
 . .*.   *************.*******

93. spacer 1.2|213993|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP024445 (Moraxella osloensis strain NP7 plasmid pNP7-2, complete sequence) position: , mismatch: 9, identity: 0.7

gctcagcatgtcgttgccagtaccgccgcg	CRISPR spacer
cactagaatgtcgttgccagcaccgccttc	Protospacer
  ..** *************.****** .

94. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NZ_HG938357 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141b, complete sequence) position: , mismatch: 9, identity: 0.7

gtccaatacgtcgtcgtgaccgccgccgaa	CRISPR spacer
cccagctacgtcgtcgtgatcgccgccacc	Protospacer
 .* . *************.*******.

95. spacer 1.3|214047|30|NZ_CP012403|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 9, identity: 0.7

gtccaatacgtcgtcgtgaccgccgccgaa	CRISPR spacer
cccggcgacgtcgtcgtcaccgccgccggg	Protospacer
 .* .  ********** **********..

96. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 9, identity: 0.7

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cgtcaggatatcggcgccgtcgagcaagac	Protospacer
 ********.************  *   .

97. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NC_011143 (Phenylobacterium zucineum HLK1 plasmid, complete sequence) position: , mismatch: 9, identity: 0.7

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
gtcgaggatgtcgccgccgtcgcccttgaa	Protospacer
. . ********* ***********.. .*

98. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP025431 (Paracoccus zhejiangensis strain J6 plasmid pPZ01, complete sequence) position: , mismatch: 9, identity: 0.7

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
gtgaacgatgtcggccccgtcgcccccgat	Protospacer
.   * ********* *********** .

99. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 9, identity: 0.7

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cgtcaggatatcggcgccgtcgagcaagac	Protospacer
 ********.************  *   .

100. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cgtcaggatatcggcgccgtcgagcaagac	Protospacer
 ********.************  *   .

101. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 9, identity: 0.7

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
cgtcaggatatcggcgccgtcgagcaagac	Protospacer
 ********.************  *   .

102. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 9, identity: 0.7

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
ggtcaggatgtcggcaccgtcggcggggcg	Protospacer
.**************.****** *     .

103. spacer 1.4|214101|30|NZ_CP012403|CRISPRCasFinder matches to MN871455 (UNVERIFIED: Pseudomonas phage Pa-B, complete genome) position: , mismatch: 9, identity: 0.7

agtcaggatgtcggcgccgtcgccccccga	CRISPR spacer
gatcaggatgtcggcgcggtagccctggag	Protospacer
..*************** ** ****.  ..

104. spacer 1.5|214155|30|NZ_CP012403|CRISPRCasFinder matches to NZ_LR594692 (Variovorax sp. WDL1 plasmid 4) position: , mismatch: 9, identity: 0.7

gtccagcacgtcgcggccggcaccaccgat	CRISPR spacer
acgagggccgtcgccgccggcaccaccgag	Protospacer
..  .*  ****** **************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

798158 : 806091

uncultured_Mediterranean_phage(83.33%)

tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045584406.1\|798158_799250_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.3e-19	38.8
WP_045584407.1\|799266_799944_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_045584687.1\|799963_800797_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.4e-36	32.7
WP_045584408.1\|800801_801437_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.5e-39	47.9
WP_045584409.1\|801588_801834_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.2e-05	48.0
WP_045584410.1\|801916_802453_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_045584411.1\|802466_803264_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	3.5e-54	47.2
WP_045584412.1\|803421_806091_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.4e-77	38.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012407

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012407_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012407_1

8012-8099

Orphan

Consensus_repeat	Method
TTATCCCGTGGACTTTGGTGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012407_1

>merge|NZ_CP012407|1|8012-8099|CRISPRCasFinder
TTATCCCGTGGACTTTGGTGACGGTCGTGTGGACTCTGGTGACGCACGACTCGCCATATTTGGAGTTATCCCGTGGACTCTGGTGACG

>NZ_CP012407|1|1|8012-8099|CRISPRCasFinder
TTATCCCGTGGACTTTGGTGACG	GTCGTGTGGACTCTGGTGACGCACGACTCGCCATATTTGGAG
TTATCCCGTGGACTCTGGTGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012407.1\|WP_158511116.1\|17251_20917_+\|relaxase-domain-containing-protein	unknown	unknown	gnl\|CDD\|378042
NZ_CP012407.1\|WP_045585401.1\|16663_17026_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012407.1\|WP_045585398.1\|13286_14543_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl\|CDD\|377920
NZ_CP012407.1\|WP_045585395.1\|8202_9132_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309782
NZ_CP012407.1\|WP_052710385.1\|10261_11116_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP012407.1\|WP_144428444.1\|11555_11951_+\|transposase	unknown	unknown	unknown
NZ_CP012407.1\|WP_045585396.1\|11947_12859_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP012407.1\|WP_045585529.1\|9255_10272_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP012407.1\|WP_144428445.1\|16350_16575_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012407.1\|WP_144428461.1\|12996_13290_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|197775

Protein	Function_ID	Function_description	E-value
NZ_CP012407.1\|WP_045585398.1\|13286_14543_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl\|CDD\|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	7.60803e-53
NZ_CP012407.1\|WP_045585395.1\|8202_9132_+\|hypothetical-protein	gnl\|CDD\|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	2.96676e-54
NZ_CP012407.1\|WP_052710385.1\|10261_11116_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.63401e-41
NZ_CP012407.1\|WP_144428461.1\|12996_13290_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	0.000193285
NZ_CP012407.1\|WP_045585396.1\|11947_12859_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.30423e-21
NZ_CP012407.1\|WP_045585529.1\|9255_10272_+\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	4.5641e-59
NZ_CP012407.1\|WP_158511116.1\|17251_20917_+\|relaxase-domain-containing-protein	gnl\|CDD\|378042	pfam08751, TrwC, TrwC relaxase. Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.	3.89045e-57

>NZ_CP012407.1|WP_045585395.1|8202_9132_+|hypothetical-protein
MSNVHQLILQHGHSEARRLLPEGKQLIDMAAAVMAEDDPALSFTYSGFCLTSFPHKKLGDSERWERHGHNVTLTIDPGSLPDADGVTRVHGVPYGSRARMIMLYLQTRAVQTNNPEVELGASMRDWLGRMGISVGGKTLKEVRDQADRIAACNLTFTWRTERGSGFVKGNIVKGGFRLQDLEDRSEQPRLWVDTVRLSDDFFQALRDHPVPVNEKALRQIANNSAAIDLYTWLAYRLHVLSKPTPVTWAAMHQQFGAGYKLMRQFRAKFGAVLEAALAVYPEAVVTMDDQGVTLYPSPPPIRERVTAIR
>NZ_CP012407.1|WP_045585529.1|9255_10272_+|AAA-family-ATPase
MTGEELRALRERLGKTQPEFAVWLNDLLGRRYDKQKVSRWETDREKVPRDVAGTLAIAALGLDRPQRHGPAVTVAVALQKGGTAKTATSVNLSYVLARAGNRVLLVDADSQGNATVHVGVTKERVVELTKQGRTHYHALTGKTPLTNVILHTDVPGLDLVPSSIALAAAEADLYHEPTGIGAMADMLSSARADYDFIVIDCAPALGMVTSNALAAAQLLLIPCQTEAHAILGLEHLLETVAKIRRRSNPDLRFLGIVPTMYTARQSQDRASLDELHSQWGAQIPLFEPIPRSTVYSQASAANMITLAGDPGAPGLETFVAIADSLMVTAGLREVQHAA
>NZ_CP012407.1|WP_052710385.1|10261_11116_+|ParB/RepB/Spo0J-family-partition-protein
MPPKFKRAERAPVSAPAETSETDKLFGLSGTLPRLIEADVAGITPNPDQPRTVFDDVALQSLADSIGRIGLQQPILVKTTDKPGRYQLVAGERRWRAHQLLGRATIPAIITEGRSEEIALIENVQRVDLDAVDLARSLQRLMETHGYRMAEVGAMLGCAEAEVSRRLSVLRLPADILDAYRQEPSRVSRSVLVELATLDDEDRIRDLWAQVLAGLTVRDLRAAKKAGQAAPSRATGWTPQAIGKSLGKMASDLSRLQEEAPSLADEHRAHLRAMRARIDTLLGE
>NZ_CP012407.1|WP_144428444.1|11555_11951_+|transposase
MDEEQGRKREGAPERAQHAGAGAPSGADASTPQRFSAARKVAAVTRLLRGEPLEVVARELNVTVARLSEWRERALAAVASAMKERERDERDEEIARLKAKVGGITMANELLEEKIAALEGKRPLARRRSRR
>NZ_CP012407.1|WP_045585396.1|11947_12859_+|IS3-family-transposase
MSRTISPSTGRPYGLGRVARTWHVSRATVYRHRAVGPAPMPGRRGPIGPCSDGELVEHIRQQILVSRFHGEGYRKIWARLQHAGIRTSPRRVRRLMGAHGLLAPHRVGRPRTRAHDGTIVTETVNVMWGTDMTETITAAEGVARVFIAVDHANSEVVGIHASKSGNRFEALEPVRQGVLRHFGAIGPGVAAGLKLRHDHGSNYMSGDFQAEIKCLGITSSPSFVREPEGNGVAERFIRTLKENFLWVHTFNTIEELRRALVEFARHYNETWLVARHGHRTPAQVRAEQLRVDRPSVAELPLAA
>NZ_CP012407.1|WP_144428461.1|12996_13290_+|helix-turn-helix-domain-containing-protein
MAPGDVARSVAARARARRVALGLTQQEVADRSGVNIWTLRRFEASGKLAFDALIRVAVVLDAIEEFGTLFPEPEFRSLDEVIERPKRQRGKRRTVVR
>NZ_CP012407.1|WP_045585398.1|13286_14543_+|type-II-toxin-antitoxin-system-HipA-family-toxin
MKHVSTLAVSLRWGEGDEEPVGRLATRDGKTYVEFDDAFLASGRLLSWFLRTPRPGVLQGPDAPFSGLHGVFDDSLPDGWGRLLIHRRAAASKINPLSLTPLDMLACMGEWAMGALVYRPESEEPVETGAIDLDQIATQSRQVLTGAPEALFPTLLRVGGSPGGARPKAVVCRDDQSGALIHGALVAPEGWSHWLVKFRGKDDPADIGPIEQAYAGMARAAGLTLPPTRLLPSGSPKTPAYFAAQRFDRVGPAGRLHLHSACGHLHADFRQPSLDYKTLMILTFQLTKDHRQVVEMFRRAAFNLFAHNRDDHGRQFAYLMDRTGSWSLAPAYDLTYADGPGGEHSTAILGEGRDPGERHLRAMATEFSIPPADVTGIIDQVRGAVDRWRDFAEDNGVGRTSRSRIGAVIAPRRAGKKP
>NZ_CP012407.1|WP_144428445.1|16350_16575_-|hypothetical-protein
MSVTLRFREEGAAFERAKRVADALGLSMEEYLFACVAEGHKVLRARCAAARSELEEPAFIRRGYPVAPPWTGME
>NZ_CP012407.1|WP_045585401.1|16663_17026_-|hypothetical-protein
MAKNGTYSPDIIATLRAALDAAAPPLLTKQEVVRELRNNVRAARGRGCPDQQILDIFAAQGITMTPSTLRSYLADKPARVKPPRKASALAAAQELKAAVPSEDAIRTAVPADTVSLEAVE
>NZ_CP012407.1|WP_158511116.1|17251_20917_+|relaxase-domain-containing-protein
MEAQAEYYLGGTEPTGVWWNLPGHFGYRNGAAVDPFAFKALHAGFSPRDDRPLVQNAGADKRRGGYDLTFSADKSISALWAVAPAAMRAEIEAAQEEAVRAALVLMQERAAETRRGRNGTIRELVALFGALFQHGDTRAGDPDLHTHAVILNVAQRQDGSWGSVANEKLYQWKMAAGALYRAALAEQLQKRLGVGIEHHGNRLEFIRIQGVPDALCQAWSKRRRAITAEAAALGFSTDSDAARAAGLAVATRGKKGYAEGREARWLAEAAAQGWGGEQAHAVTGQAQGNPADRRNQAWERLKARVRETVEQDSVFTEQKLWQVAAEAAAGAFPARDIGGLVTRLQAEGVVVRLPGEDERGRVVYSTREAVEDEVAVRALARQAAQGSGLAVIDGMARWLIQRSDIPLSNEQAEAAHHAMSATGGLVLVEGAPGVGKSTLLKPVVTGYRMSGATQILACAVAWRQARSLGEGIAADESLAAAALLSRWRTGALAVDARTVLVVDELGQWSARQARTLMELQRATGCRVVGVGDRRQLQPIGAGPGMRLLTREVEPVIVDTIIRQSDAAARAAVRAVLEGDAAAAVAAHRQRGHIVETSGPDAAVAAVADRLMQARAERRSTIAIAETWHDVRAISAAVRAQLRANGALGQDALTITASGSRPGQSVMLSLAVGDELRFRHRDDRLGVVNGDTGRVLAIAGTVVTVETAGRRIAVDTTQYLDKDGLCPLAHAYASTLAAAQGVTVEAPILLSTDRLTKQAATVALSRGVGWTTVVVDRTALEEEIRAGRVDEAARIPVTAGDIDAHLARAWSRDVEKVSALDYLDSATVEDWVAGWTGTLPTTALSPSGQPVAEVVDLAHLRAHRQHAENRQRLAAAGARLAGQAQALANHLGERVWSMASRLVPLGARLEAQGQRLRAEQSAEAEALTVLTQRVQAGAAFHIGPDQRRTIDGLSDADVATLRQGWTERVANEFDRIAADQARAIVERQTALEAVRVLTRELFETKREGHWGRAGEIEFGYLPSAMARLAALDPAAAAAEEQAAAEAWRRELEEMERQSQSSRMARESAATAGRFAVPLQTHGPSRTAPAPAAAAPTPPIRDLSLEARNARANDLVQRTKAPEAWQNPLAIYLDAHTQYYDNDAACRVEDLSGAIEEANHSERLMQILAKLCGAAAQQVLHVPAAREAARIAGRLAEIEEIVGVLGSSPTPDQEAEDWDGPGM

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP012407_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012407_2

59854-59971

Orphan

Consensus_repeat	Method
CCACGATGCTGGTGAGCCTGCTTGAGACGATCACCGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012407_2

>merge|NZ_CP012407|2|59854-59971|CRISPRCasFinder
CCACGATGCTGGTGAGCCTGCTTGAGACGATCACCGGCGGTGTCGGCACCGACGTCATCACGGTCGGCACGGCCGGCGCCACGATGCTGGTGAGCCTGCTTGAGACGATCGCCGGCGG

>NZ_CP012407|2|2|59854-59971|CRISPRCasFinder
CCACGATGCTGGTGAGCCTGCTTGAGACGATCACCGGCGG	TGTCGGCACCGACGTCATCACGGTCGGCACGGCCGGCG
CCACGATGCTGGTGAGCCTGCTTGAGACGATCGCCGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012407.1\|WP_052710390.1\|53767_56782_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP012407.1\|WP_045582059.1\|68937_70284_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379252
NZ_CP012407.1\|WP_082109328.1\|79836_81360_+\|DUF4407-domain-containing-protein	unknown	unknown	gnl\|CDD\|379583
NZ_CP012407.1\|WP_052710420.1\|48801_52254_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|379238
NZ_CP012407.1\|WP_144428452.1\|67792_68859_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP012407.1\|WP_045585420.1\|71574_72588_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NZ_CP012407.1\|WP_045585414.1\|46579_47722_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NZ_CP012407.1\|WP_045585422.1\|74056_76006_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP012407.1\|WP_045585423.1\|76061_76820_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP012407.1\|WP_052710391.1\|76812_77748_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP012407.1\|WP_063840398.1\|56828_58979_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP012407.1\|WP_082109325.1\|47735_48770_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187566
NZ_CP012407.1\|WP_045585419.1\|70788_71220_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012407.1\|WP_082109327.1\|77883_79722_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP012407.1\|WP_158511118.1\|45615_46356_-\|methyltransferase,-TIGR04325-family	unknown	unknown	gnl\|CDD\|275128
NZ_CP012407.1\|WP_082109326.1\|52764_53760_+\|TIGR00180-family-glycosyltransferase	unknown	unknown	gnl\|CDD\|275233
NZ_CP012407.1\|WP_045585421.1\|72720_73776_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NZ_CP012407.1\|WP_144428451.1\|52257_52617_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012407.1\|WP_144428450.1\|43692_45024_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012407.1\|WP_158511117.1\|45159_45321_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP012407.1\|WP_052710390.1\|53767_56782_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	4.81794e-21
NZ_CP012407.1\|WP_082109328.1\|79836_81360_+\|DUF4407-domain-containing-protein	gnl\|CDD\|379583	pfam14362, DUF4407, Domain of unknown function (DUF4407). This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important.	4.6109e-11
NZ_CP012407.1\|WP_052710420.1\|48801_52254_-\|glycosyltransferase	gnl\|CDD\|379238	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1.	2.72349e-22
NZ_CP012407.1\|WP_144428452.1\|67792_68859_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	6.77218e-21
NZ_CP012407.1\|WP_045585420.1\|71574_72588_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	4.34268e-141
NZ_CP012407.1\|WP_045585414.1\|46579_47722_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	1.38862e-139
NZ_CP012407.1\|WP_045585422.1\|74056_76006_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.46017e-17
NZ_CP012407.1\|WP_045585423.1\|76061_76820_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.98648e-20
NZ_CP012407.1\|WP_052710391.1\|76812_77748_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.81159e-19
NZ_CP012407.1\|WP_045582059.1\|68937_70284_-\|hypothetical-protein	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.2715e-22
NZ_CP012407.1\|WP_082109325.1\|47735_48770_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187566	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs. This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.52615e-75
NZ_CP012407.1\|WP_082109327.1\|77883_79722_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.1051e-14
NZ_CP012407.1\|WP_158511118.1\|45615_46356_-\|methyltransferase,-TIGR04325-family	gnl\|CDD\|275128	TIGR04325, conserved_hypothetical_protein, putative methyltransferase, LIC12133 family. Members of this family tend to occur next to glycosyltransferases and other characteristic enzymes of O-antigen biosynthetic regions. The founding member is LIC12133 from Leptospira interrogans serovar Copenhageni. PSI-BLAST reveals distant homology to known SAM-dependent methyltransferases, as in pfam13489.	6.11341e-18
NZ_CP012407.1\|WP_082109326.1\|52764_53760_+\|TIGR00180-family-glycosyltransferase	gnl\|CDD\|275233	TIGR04440, hypothetical_protein, glycosyltransferase domain. This model describes a putative glycotransferase domain, related to the group 2 family glycosyltransferases of pfam00535.	2.78953e-52
NZ_CP012407.1\|WP_045585421.1\|72720_73776_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP012407.1\|WP_063840398.1\|56828_58979_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.92734e-14

>NZ_CP012407.1|WP_063840398.1|56828_58979_-|tetratricopeptide-repeat-protein
MQHHQSGRLAVAARVYRRILEITPDQTDALHLLGLVARRTGQLHAALRLLARSLRISPDMAEPRLNLGNILRDHGHGTASTAYRSAIALRPDLTAAYENLGGLYRAQGRSAEAEHAYRLAVRTDPMAAEGHNGLANVLQEREDLNGAVAAYRRGLAVDPTHIAACNNMGIALRGLDRQGVAMACHRHAVTLDPYFAAGHTSLGLALQEQGHLEAAARAHARAVAVDPGFAGGHANHGNARLNQNRVDEAIAGFRRAIAIEPASPDARRNLGMALLVAGRFEEGWCEYEWRLRCKDAPTHAAMPKPRWTGEPLDGRRILMHGEQGLGDALQFCRYVPLVAARGGRVILGLPAALERVMAGLPGVERFVSGQFPTDAVDLHLSMLSLGEVFGTQMDTIPHRVPYLTAEPDLAARWGERLKALEKDGGGLKVGIVWAGSPTHGNDRNRSIGLAPFARLASIPGVSLVSIQKGPTEGQAANPPGGFPLLNLSPDIHDFADTAAIMAGLDLVVCVDTSVAHLAGALGVPVWVMVPFAPDWRWMLDRDDSPWYPTMRLFRQERPGSWDGAIHRLERALRERAASSRHLRTGPSDMPILAPVSWGELLDKITILDIKAERIADADKLANVRREREALVAVAAQADTARAEVAALIDELRAVNTTLWEVEDEIRDCERAKDFGPRFVELARQVYHTNDRRAALKRELNALLGSELVEEKSYQAY
>NZ_CP012407.1|WP_052710390.1|53767_56782_-|methyltransferase-domain-containing-protein
MTAETATGTASKPTDRSAPEHRGPQHHALEQRPSQVLELCRSGRPEEAEGPYRELCGNPPADAAGLLSLAEAARILGRPAETVAWAEAAVRAQADRAEGWSVLALAFVAAGRLDDGYAAAAEALRRVGNGAASEAAAIQAAVQAHRAQALARLRLGHLAEAAAACDAALRLVDGVAQPPQSLRQAQAETLGTLALVRMLEGRTEEAEALFRRALSHRPVLPEILGNHASLLARLGRDEEALEQAEQAVALRPRLAGTLHLIGTLHHRAGQPESAIAAFHRVLAVDPGHSDARLRLADSLRVAGHWQEAATVCRDGLARIANPDDPGRTPLLANLGTALQSGGDAAGALEAYREALRLAPDLPEVHNNLARLHQETGNPDAAIEELRRATAGRPANQPLPLPLRRALLSLLVAAGRTAEAEAEAFGIARTAPEDAELCFGIAALFLQGGWRDQALPYVRKAIRLAPDVPRNWIAFAEALRDAALPELDEGLRADLLAALGRPEVEGSGLSRAIAGTLMTSPILARLAALPEDSGPALDDASRTLLADGSLAGLAEDALLLVHLRAAPVCDPALERALTRLRRVLLLALTGPGLPDRPAWRALCAAIAGQCFLNEYVFAETDGEFQVLAVLIRAAEAALTGGEQPPAVLVALLGAYRPLYRWERAGALQALSWPEEIALLLNRQVAEPLAEAAIQADLPALTQISHPVSVGVRAQYEENPYPRWMTTGLLPEPVTLPRFLHALFPHAALPASPAWDAPGWEAPEVLVAGCGTGREAVWAASTLKNAKVLAVDLSRRSLAYATRQSRRLGLTGIEFAQADLLELGTLGRRFDVVHSVGVLHHMEDPIAGLRVLRRLLRPHGVMEVGFYSAAARRPILAARQFIAERGHPPTLDGIRRVRSDILGLPADHPARAVVRSPDFYGTSACRDLLMHVHELHVTLPWLAGALETLGLEFLGFRLADPAVAALYRKRFPEDPAMTSLARWDRLEAEHPMIFGGLYQAWVRARG
>NZ_CP012407.1|WP_082109326.1|52764_53760_+|TIGR00180-family-glycosyltransferase
MTPITIIIPTMNRSIYLERSLNYYKNSGFDGCIIIGDSSEGKEADLASDLVERFKNCRFSLRFTRYPRSVSLIDVWRKLIATVDTKYITYAGDDDLQIPSGMNAAVAFLEHNSEYIAAKCEMIEVEIGEIAPYGDIIKVSRKPFPNYDIDSAVQRFSTYAQMAISVQYGVYRTEAWRFAYEVAPAPYLPYFGEEFIPCSVCVVLGKLKSLSNLGTIQQVDGSGGVWKKRTMFDLIRTPEWPVVSRLFQARLAELLTRIDRIVPADAERVTEQILWWHVNMFMNHQYKTKHEKQPEQERQSSPGLLAELDRSQEFALVRDVFRRKREIHFQA
>NZ_CP012407.1|WP_144428451.1|52257_52617_+|hypothetical-protein
MFAQPRSLRGAVIGDDKMGIVADRLQVRGDVVKSTETVPKQCIGLFTETGGFQLGVFGIKAFQIGSIKGFNLDDPQILALCAHGRCHLSSHDGGRQVKPCSAPRPLAADHSDCQKGRQR
>NZ_CP012407.1|WP_052710420.1|48801_52254_-|glycosyltransferase
MTIPGHGNVIQDILRRQIDLLAPDILYFSDCTSFDSRFVRSLTRRPPLVIGWQAAPVPTGTDWSEFDVLLSGLSAMRDMALRLGAKAAEHFMPGFPAWIGDAIGPSEERHDLLFAGSYTPHQHARRNRLLTLLGEKALSGAFDCAFHLTTPPEALPPALARWAQPPVFGLPMHRVLRSGRIVFDSRSDMNAVAPDGTVFDVAGNETANMRLFETTGSGAFLLTEHHDNLSRYFEIGREIETFRSEGELLEKIHHYLANPEERRAIARRGQERCLRDHSMARRIHDFDTIVRRHLAAAAGNADRGKRMPERVSTTVEETPAGASRPIRHFCTYFDGNYAARGLVMMESIRRFLPDARFHVLCLNDTAHRIVTEQQPAATAIRLSELEDFDPDLAACRADRTKVEYYFTCTPCLPRMILALNPDIGHITYLDSDLYFYRSPEEVFTAIGDRSVAITPHRFSPACADRLVYGRFNVAWVSWRNDREGRRCLEDYRSDCLAWCHDRLEDDRFADQKYLDRWPDRYPNLRILDGKGINLALWNVDNHRLHRRDDGTVMVDDEPLVFVHFHGIKHIGTGTYDLRLRDYQVRANMPFLVDELYKPYLASIEAAFGKLAPLYRLAIPGDPRFGQTRNTKMDDVAGAAGAAASAAAGASSAGYAVIDRQTAVRLSGSDWSGSAWEQDDVAERQEAAYRDLLTGMRQGQARIDLAVAATAVAACGLEAPTLLEVGCASGYYKEVFDHLLGGRVRYAGIDRSATLIGLARRQRPGTPFEIADATRLPVADAGVDIVFNGVALMHIVDYEAAIAESRRAAKRFVIFHTVPVLHNRPTTYLTKLAYGQPTVEVILNEGELRVLFARNGLAVRRVWGSIPYDLSAVLGESTPTRSFLCEVVEPVVPLRPALLNIGCGSHFHGDWVNLDVAPRDSAVMPHDVTRHPLPFAKGTFDAVYHSHVLEHLPKSAVPAFLADCLRVLKPGGILRIAIPDLERICRLYLEFLNRADSGDKEAADRYDWMMLELLDQMVRNESGGEMLRALRRVPLPAEDFIVERIGWEAKGMIAQIRAEAAAAPQAAKPSHPATLSAEAIGRFRQSGEVHQWMYDRFSLRRLLTDTGFIEAAVTAASDSRIAGFAAYGLDVEANGRVRKPDSLFVEARKPI
>NZ_CP012407.1|WP_082109325.1|47735_48770_-|NAD-dependent-epimerase/dehydratase-family-protein
MNDISPACSPSAAFDDPTRWRDRRVLITGGMGFIGSTLARRLAGLGADVVVVDSLVPDYGGNPFNMDGCGGPGGRVQVNISDIRDPHSLRWLARDREMIFNLAGQTSHMDSMTDPFTDLAINGTAQLSLLEICRQHNQGARIVFASTRQIYGRPRYLPVDEKHPLDPVDVNGINKIAGESYHLLYSKVYGLPTAVLRLTNTYGPRMRIKDARQTFLGVWVRAVVEGRPFEVWGGDQLRDYTYVDDAVDAMMLAMLTPELEGKAFNLGGDRVVSLRETAEILARHSDGTFSTREFPSDRKRIDIGDYYADDTAFRTATGWSPRVSLEEGLRRTVDYYRQHLAHYL
>NZ_CP012407.1|WP_045585414.1|46579_47722_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MHAPIAQTNPGAWCQAHRDEIEDAVRRVIDSGWYILGREVTAFEAEFAAFAGEAGTGGLHAVGVANGTDALVLALESVGIGPGAAVVTVSHTAVATVAAIEMAGATPILVDVDEAHGLDPAALEAALAAPPPGTPPIRAIVPVHLYGQPVDLDAVMAIADRHGLTVVEDMAQAHGALWRSRPVGSFGAAASYSFYPTKNLGALGDGGALVTRDAAIAERTRSLRQYGWRERYISDMVGRNSRLDELQAAILRVGLRHLPGWNERRRAIAAAYDRGLAGLPVTLPVRRPGATHVFHQYVVELDDRDAVADRLRGHGIGTGVHYPAPVHLQPAYRNRIPLGAGSLARTERLAGRVLSLPMHPFLTDDEVERVIQAMAMALNA
>NZ_CP012407.1|WP_158511118.1|45615_46356_-|methyltransferase,-TIGR04325-family
MKIVSVRFEEHVSFEDAKNATSGYNDNLLIESMPNYKHSACINHGSSQDENTSNISGMAAFLSAASYYENNEFDVVDIGGSTGGHYALFKQLYRGSAKFRWHIVETSVQVNYGKKFIADPDLFFYEDISEINTGKINILHFGGVLGYLPDPIGYMDNPQVRKSDFIIFNRTSLVNGNSNKNFAQFVNYDKGVVSYAGRAFGMNLLHEIIERTHKVEINWTNHHEVFRLGSETLCIGSGMLCRRKGL
>NZ_CP012407.1|WP_158511117.1|45159_45321_-|hypothetical-protein
METPPRHSLSDAKKGTLLLEQAVLIERLAARITELEDDEVERAIQAMIVALSS
>NZ_CP012407.1|WP_144428450.1|43692_45024_+|hypothetical-protein
MAEVMNIDIREIYDAIHRGDLRFAMWVMRHLSPELENLFRDSDDPAVRLCYLRAKAMTYRALEIYRPCPILGPAGPTLRPRQRAMIETILTNHWMSWQRGNTPEPVCRNVFKRSEGEEELRGDDAKVAIVFGRHIHSNPLYIESDFYVHFNKSCKDYGCDVYAYNADDITYSQEIKNKNNICINKSLDELSNFLEKVRPDIVVTDGNFSPSKDTINSKYWMEKKELLKFKLAICVGDSYDDSCNIQEWLDCSDVVITMNETSLQTYGKRNVMTIPSIPLSESLLKESDSKDIPISCIGSANRNRDAWLRPFQALGVKIFASLHDRTKENAPNSEKYRDIMGRSKIIFNNGVVSPLVHIQTGRFYEAIMSKAVVLEEVGSPAYKYFSEYVHYIPVANIDQAISFSQFLLENEDWRSMIANSAKDYWNKYYATTLFWESLIRRLK
>NZ_CP012407.1|WP_144428452.1|67792_68859_-|IS630-family-transposase
MPAALPIREDLSASELRALARQENKGRVAARMFAIAHALDGVSRAEAARLAGMDRQALRDAVVRYNAEGISGLCDRPLPGRPEWLSEGEQATLKAIILAGPDPRQHGCVEWTLPILCEVIAERFAKTLHPASLSRIVRRLNLSKQKTRPRHPQSDAKAQAAFKKGLREALKAAAAAHPERRLQLWFQDEARIGQKGRTAHRWWERGQRPAGLCDKRFTSAYLYAAVCPASGADFALVMPTVSTTAMSLFLDGFSRSLEPDVQAVLVLDQAGWHGSRALVVPDNVTLVPLPPYSPELNPVELIWLYLRERFLSHRLLDDYDAVVQACCDAWNALTATPERLRSLTSYPWLPCVNA
>NZ_CP012407.1|WP_045582059.1|68937_70284_-|hypothetical-protein
MSPVPDSIERWMAPFAALFTRPTWRHVLVLVAGALLTPGRRTVTAVLSIMGQRETGSFANFHRVLNRNRWSSLAVARHLFTLLIAAFVPQGPVVIGIDETIERRWGPKIKARGIYRDPVRSSHGHFVKASGLRWMVVMLLVPIPWAGRVWALPFLSALAPSERFAQDTRRRHKKLTDWARQLLLQVRRWAPGRPLIVVADSSYAAIELLSDLRAHLTVVTRLRLDARLFEPAPPRIPGTKGRPRVSGTRLPSLVQRLKDTGTSWCRVRVNGWYGGGERQLEISTGTAIWYHPGKQVPIRWVLVRDVQGAFEPQGFLCTDLQADPLDVLRWFVRRWAVEVTFAEVRRHLGVETQRQWSDQAIARTTPALLGLFSLVTLWANDISAGAAITPRAAPWYRKDEPTFSDAIAAVRLQLWREMTFPVSAHHAEIAKPPDPILNRLIQAVCFPA
>NZ_CP012407.1|WP_045585419.1|70788_71220_-|hypothetical-protein
MAVASKLVINIEVDDRSVLFPDGKFLSHITLHEDKTLEGGEAVRMEGVFHFNESRLGPEIASLEIEDAHELARSILDAVFQGRTQHVLSQTTKVAVVFNPNGFVLRFGEGSALRELFIGSPAIIRLAQGILRMTDRLSAMLAH
>NZ_CP012407.1|WP_045585420.1|71574_72588_-|GDP-mannose-4,6-dehydratase
MTIGTTTRSEPKTALIFGVSGQDGAYLAQLLLGKGYTVHGTSRDREMSSFSNLRQLGIFGRVVLHSAVLTDFRSVVEVISRVRPAEIYNLASQASVGLSFDQPVETLNSTINSTINILEAIRFLKLDTRFYNASSSECFGNTGSPADESTPFHPRSPYGVGKAAAYWAVANYREAYGLFACSGILFNHESPLRPVRYVTQKIVRGAADIAERKTDGLELGTLSIARDWGWAPEYVDAMARMLAHDQPEDFVIATGEAHRLEDFVEQAFSYFGLDWRRHVHGNAALLRPSDIAFSVGNPAKAEQLLGWRAERRMAEVVAGLAEAEMTRRAQRTDGHAQ
>NZ_CP012407.1|WP_045585421.1|72720_73776_-|GDP-mannose-4,6-dehydratase
MRKVALITGATGQDGAYLAELLLGKGYVVHGVKRRSSSFNTGRVEHLYRDPHEEDVRFFMHYGDLTDSTNLIRLVQQIQPTEIYNLAAQSHVHVSFETPEYTANADGIGTLRLLEAIRILGMEKTARFYQASTSELYGKVQETPQRETTPFYPRSPYAAAKLYAYWITVNYREAYGMHASNGILFNHEGPTRGETFVTRKITRAVAAIEHGRQDCLYLGNLDAKRDWGHARDYVEGMWRILQQDEADDYVLATGETHSVREFVELAFGHVGRGIEWRGEGVDEEGVCQKTGKVVVRIDPRYFRPTEVDLLLGDPSKARAKLGWTHTTAFRDLVREMVEADMRLAANGDDHR
>NZ_CP012407.1|WP_045585422.1|74056_76006_+|tetratricopeptide-repeat-protein
MTTVAEALQIAVGYHRADRFDEARALYLRILAVDPRNAHAMHLLGLAERRLGRPDKALEMIRSALDIQPGMADACYNLGSILAELRRIDEAVAAHRRALVLAPELEDAYNALAALLCDRGGPRDWGIAILTFRRVLRLNPHRIAAYHDLGIALRQTGALEEAQTSQRLALSLQPNFGGACANLGNIRIEMGDPDGAMACFHRSLLLEPEQGGVLYNQGNAQHAAGLVEAAVESYARAARAGITLALPRLGYALMELGRPAEAEQILRVALLSPGGDVPGAIDLLSTLLIRQGRLEETRRFFAEYRYPHATTPDAFRIDCLTAIAESWVAAGDCERAAAMLDDVQWHGSRFFTVKSIACLGRTLARQGRRLERRENPDPSQPRICSSTLATHGRFAHNVLEYVLLRLYAETFGYRLETPDWVGGCYFDLDDPKPSGGLKPLSFGRHMLNDLVTGRRDDPRPDVDILSPLFLFEHREEWRERVQSWLRPRPEWLTHVDPVMQALKARGNTVVALHIRRGDFVWFRYTITETSWYVDWLKALWPTLDRPVLYIATDDPATIADFAEFGPVSLDHLVKDGLAKDGAVQPWTGLEFLQDFHVLMNADVLGVSAQSGYSQLAALLNRNARLFVEPDAAARRIRPYSPWTSPSGTP
>NZ_CP012407.1|WP_045585423.1|76061_76820_+|class-I-SAM-dependent-methyltransferase
MDLATKEFYDDFWPRFVPIYDETKKYMLETLTERQISRALDAGCGHGICSVILSEMAETVVSVDVSSDSLATARQQAQRFGRDNIEFHHQDLQELDTNLGPFDLVWCWGVAMMAPDPMKVMRNLMAVTKPGGTVYLGLYLKTWLSPVHEGVRHFCRAYMDTPARRKLVGGFFTGLTKVACALKGQEINRRADNVSIQAQVEDWYYPPYKTFYSIEEIVALFERNGFKAECIQDRLGRMKSATIFVIRATKNA
>NZ_CP012407.1|WP_052710391.1|76812_77748_+|class-I-SAM-dependent-methyltransferase
MPEAAAGQEGRTVPPDREKPDWEELGRLLSRGYIDSGFIGGVTRVPVEDVVRDMLSEARADEQVAELRRTAAAAGVDADRARILEVGSGCGMTVVRGRTAHGLDIHGIEPSMGEYSSTLDVCRRLIGHYGLPADAVRDATGEAIPFPDASFDIVYSSNVLEHVGDPAAVLDEALRVLKPGGLLLIVVPNYGSWWEGHYGILWLPRMPAGLAKLYVRLFGRDPAYVDTLNLIDRPWFDRWLGRHPGQLEVLDWGWSVFEQRLRTLGFGDWAALSVAKRIVTFVHRSGLLEPAIWLARRLHWETPIIFAARKR
>NZ_CP012407.1|WP_082109327.1|77883_79722_+|tetratricopeptide-repeat-protein
MDISTMGQDTARAIEQYRAGRRDDALALAEQALRGNPADSGALNLAGAILYELGRLDEAEGMLARLVALDPLFMQARINLAVVLQTKGAGMEAAAQFRIVAALIPDQMEAHERLGSLLHGLGDHAGATRHLRHTVRLAPEDPNRRVLLSVSLMSSGAYAEAAEILSGVLARHPGHGDARSHLAGAWLSLGRPDLAEEALSEVGADAAAMAGGATEILGRARLYRRIADEARRPQVPDGMLVRAPFSVLSGYGDFAQHFVRSLMERGQTLRLAGLKGEESWRPSFSDPILQAAARRLGEPLRPRLALSMLTPPLVEPIPGVPTVNYTMFEGPRIPDGWAACNRAHDLVVVPTESSRLAWIAAGHPEDRIRVCPPGIAPNPADASARPMALMGPRGRAVMDYRVRVLNISDFVARKNLDGLLRVWLRATRADDDAILILKVGKGGASLAGEVRRLVEQGMRATGRRLDEAAPIALLTDRYDEQGIAALYAMATHYFSLSHGEGWDLPITRAGCLGAGLIAPRHSAYTAYLNDRVAHLIPCTTGPALMPYSSAYYPAFHGLDWWHPDEDAAAGILSRVVRDPEGERRDAARHLMDSFTWDAAAHRLLDALDGVGR
>NZ_CP012407.1|WP_082109328.1|79836_81360_+|DUF4407-domain-containing-protein
MLAVVLIKMNTAIAKPFYEGGGALGDPFGMKFVSELFRELRLLVEQITTLQGGSVSGILAGLLLMVIALALLTVVIAFLRLLFTKIGLKARFKHHDPFEGISFPYAVKGSPLMRAILLLSGTRYEIYLMSPTGDRTRRLLLSIALLFAFLYMFFSYFAFLSVSIQGELFKDGNFLEALPFLIAALFIAMVMVLIDASIIVGSNPDGVQNGQAGAVVPLKAAFLRVAFAMAMGYFASSIVVVYVFRAEAVAAALDNDSRLQRFDNDANRFKSTLDTKAAELAAINGRIKTLEDDERCLSQVLDVERTGFLNGKRAVKGQVICGGYAFTGSPGVGSKYRSMEADRNTVRASIAGEKISRDKIIKSIDETEKLIKPSLDQKNGYISSVKSNFMMLHNALIKRAQQDPLGIGSYFAFMTLLFMMIEMAPLIMKFHVKSRDYDELCKVNETQYRDFFEAKSHLNQPRQEAPSTGGKVSLPDLLGTVFHKLVELFGVASELFQKLLGMAKRLF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012407_2	2.1\|59894\|38\|NZ_CP012407\|CRISPRCasFinder	59894-59931	38	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	284780-284817	0	1.0
NZ_CP012407_2	2.1\|59894\|38\|NZ_CP012407\|CRISPRCasFinder	59894-59931	38	NZ_CP039640	Azospirillum sp. TSH100 plasmid p1, complete sequence	224718-224755	6	0.842
NZ_CP012407_2	2.1\|59894\|38\|NZ_CP012407\|CRISPRCasFinder	59894-59931	38	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	291494-291531	7	0.816

1. spacer 2.1|59894|38|NZ_CP012407|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcggcaccgacgtcatcacggtcggcacggccggcg	CRISPR spacer
tgtcggcaccgacgtcatcacggtcggcacggccggcg	Protospacer
**************************************

2. spacer 2.1|59894|38|NZ_CP012407|CRISPRCasFinder matches to NZ_CP039640 (Azospirillum sp. TSH100 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.842

tgtcggcaccgacgtcatcacggtcggcacggccggcg	CRISPR spacer
cgctgccaccgacgtcatcacgatcggcaccgccggcg	Protospacer
.*..* ****************.******* *******

3. spacer 2.1|59894|38|NZ_CP012407|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 7, identity: 0.816

tgtcggcaccgacgtcatcacggtcgg---cacggccggcg	CRISPR spacer
cgtcggcaccgacgtgatcacgctcggcgacacggcca---	Protospacer
.************** ****** ****   *******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11555 : 68859

Yellowstone_lake_phycodnavirus(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144428444.1\|11555_11951_+\|transposase	transposase	NA	NA	NA	NA
WP_045585396.1\|11947_12859_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_144428461.1\|12996_13290_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_045585398.1\|13286_14543_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_144428445.1\|16350_16575_-	hypothetical protein	NA	NA	NA	NA
WP_045585401.1\|16663_17026_-	hypothetical protein	NA	NA	NA	NA
WP_158511116.1\|17251_20917_+	relaxase domain-containing protein	NA	NA	NA	NA
WP_144428446.1\|20940_21363_+	hypothetical protein	NA	NA	NA	NA
WP_144428447.1\|21733_22249_+	hypothetical protein	NA	NA	NA	NA
WP_144428448.1\|22900_24131_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	8.7e-105	67.0
WP_144428449.1\|24497_25206_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	5.2e-09	33.0
WP_045585403.1\|25371_26448_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_045585404.1\|26645_28571_+	asparagine synthase (glutamine-hydrolyzing)	A0A2P1ELF7	Moumouvirus	2.6e-23	24.7
WP_045585405.1\|28567_30511_+	hypothetical protein	NA	NA	NA	NA
WP_045585406.1\|30600_31623_-	glycosyltransferase family 2 protein	B9UDL7	Salmonella_phage	1.4e-28	30.1
WP_045585407.1\|31728_32712_-	flippase-like domain-containing protein	NA	NA	NA	NA
WP_045585408.1\|32850_33627_-	class I SAM-dependent methyltransferase	M4R110	Tetraselmis_viridis_virus	4.0e-07	36.7
WP_052710387.1\|33623_34508_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_045585409.1\|34557_35742_-	glycosyltransferase	NA	NA	NA	NA
WP_045585410.1\|35927_37505_+	glycosyltransferase family protein	NA	NA	NA	NA
WP_052710388.1\|37489_38290_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_045585411.1\|38760_40152_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_052710389.1\|40180_41476_-	hypothetical protein	A0A0P0YM34	Yellowstone_lake_phycodnavirus	1.4e-23	32.4
WP_045585412.1\|41472_42036_-	hypothetical protein	NA	NA	NA	NA
WP_045585413.1\|42161_43469_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_144428450.1\|43692_45024_+	hypothetical protein	NA	NA	NA	NA
WP_158511117.1\|45159_45321_-	hypothetical protein	NA	NA	NA	NA
WP_158511118.1\|45615_46356_-	methyltransferase, TIGR04325 family	NA	NA	NA	NA
WP_045585414.1\|46579_47722_-	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	5.7e-34	29.7
WP_082109325.1\|47735_48770_-	NAD-dependent epimerase/dehydratase family protein	A0A0P0YMS6	Yellowstone_lake_phycodnavirus	1.2e-22	26.2
WP_052710420.1\|48801_52254_-	glycosyltransferase	NA	NA	NA	NA
WP_144428451.1\|52257_52617_+	hypothetical protein	NA	NA	NA	NA
WP_082109326.1\|52764_53760_+	TIGR00180 family glycosyltransferase	NA	NA	NA	NA
WP_052710390.1\|53767_56782_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_063840398.1\|56828_58979_-	tetratricopeptide repeat protein	A0A1C9C5K8	Heterosigma_akashiwo_virus	6.8e-12	32.5
WP_045585417.1\|59591_67544_+	calcium-binding protein	NA	NA	NA	NA
WP_144428452.1\|67792_68859_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

109458 : 186473

uncultured_marine_virus(15.38%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585440.1\|109458_110205_+\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_045585441.1\|110272_111337_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_082109354.1\|111411_112497_+	hypothetical protein	NA	NA	NA	NA
WP_014189879.1\|112612_112945_+	hypothetical protein	NA	NA	NA	NA
WP_045585443.1\|112941_113859_+	hypothetical protein	A0A0F7L8L8	uncultured_marine_virus	1.9e-08	31.1
WP_045585444.1\|113852_114071_+	hypothetical protein	NA	NA	NA	NA
WP_144428453.1\|114419_115271_-	hypothetical protein	NA	NA	NA	NA
WP_045585446.1\|115468_116560_-	S-methyl-5-thioribose-1-phosphate isomerase	NA	NA	NA	NA
WP_045585447.1\|116846_117734_+	S-methyl-5'-thioadenosine phosphorylase	NA	NA	NA	NA
WP_045585448.1\|117807_118977_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A218MN59	uncultured_virus	4.9e-41	30.8
WP_045585449.1\|119130_120201_-	acetoin dehydrogenase	NA	NA	NA	NA
WP_045585450.1\|120187_121144_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
WP_045585548.1\|121497_122433_-	NAD(P)-dependent oxidoreductase	A0A0F7LC08	uncultured_marine_virus	3.9e-73	45.3
WP_082109335.1\|122800_124090_+	HAD-IIIA family hydrolase	NA	NA	NA	NA
WP_052710395.1\|124121_126161_-	glycosyltransferase family 41 protein	NA	NA	NA	NA
WP_052710396.1\|126157_127729_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045585452.1\|127800_128625_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_052710397.1\|128794_129484_+	hypothetical protein	A0A2H4UUJ1	Bodo_saltans_virus	2.9e-09	25.1
WP_014189898.1\|129509_130154_+	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	4.5e-36	41.1
WP_045585453.1\|130150_131674_+	NTP transferase domain-containing protein	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	6.9e-51	46.1
WP_045585454.1\|131670_132369_+	hypothetical protein	M1I080	Acanthocystis_turfacea_Chlorella_virus	1.9e-11	25.9
WP_045585455.1\|132365_133490_+	hypothetical protein	NA	NA	NA	NA
WP_052710398.1\|133511_135263_-	glycosyltransferase family 41 protein	NA	NA	NA	NA
WP_052710399.1\|135262_135862_-	SIS domain-containing protein	NA	NA	NA	NA
WP_082109336.1\|136122_136647_+	hypothetical protein	NA	NA	NA	NA
WP_052710400.1\|136666_137980_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_052710401.1\|138283_139888_+	hypothetical protein	NA	NA	NA	NA
WP_082109355.1\|139899_142938_+	glycosyltransferase	NA	NA	NA	NA
WP_052710402.1\|143099_146243_+	hypothetical protein	NA	NA	NA	NA
WP_052710403.1\|146270_148505_-	peptidase	NA	NA	NA	NA
WP_144428454.1\|148581_149109_-	hypothetical protein	NA	NA	NA	NA
WP_052710404.1\|149193_150672_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_045585558.1\|150668_151466_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_045585559.1\|151513_153634_-	TolC family protein	NA	NA	NA	NA
WP_045585459.1\|153764_168470_-	DUF4347 domain-containing protein	A0A2D1GMQ7	Marinobacter_phage	4.2e-12	25.6
WP_082109356.1\|169475_170147_+	hypothetical protein	A0A0U4JXW2	Arthrobacter_phage	1.5e-10	43.9
WP_045585460.1\|170143_170470_+	hypothetical protein	NA	NA	NA	NA
WP_045585461.1\|170547_171150_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_052710407.1\|171186_173061_+	hypothetical protein	NA	NA	NA	NA
WP_045585462.1\|173071_174433_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_045585463.1\|174464_174917_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	2.6e-38	61.4
WP_045585464.1\|174956_176189_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1B0VCD8	Salmonella_phage	5.5e-83	43.4
WP_045585465.1\|176207_176969_+	hypothetical protein	NA	NA	NA	NA
WP_045585466.1\|177064_177556_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_144428251.1\|178809_179968_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.4e-19	27.4
WP_045585468.1\|180195_180531_-	hypothetical protein	NA	NA	NA	NA
WP_144428455.1\|180545_181073_+	hypothetical protein	NA	NA	NA	NA
WP_052710409.1\|182245_184606_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.7e-53	26.6
WP_144428456.1\|184488_184875_-	DUF4158 domain-containing protein	NA	NA	NA	NA
WP_045585470.1\|185162_186473_+\|transposase	IS701 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

266498 : 281764

Tupanvirus(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052710377.1\|266498_267527_-	glycosyltransferase	B9UDL7	Salmonella_phage	7.5e-09	25.0
WP_082109348.1\|267528_268905_-	hypothetical protein	NA	NA	NA	NA
WP_045585356.1\|269412_270372_-	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	2.7e-85	48.4
WP_045585514.1\|270420_271764_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.8e-80	39.5
WP_052710418.1\|272201_273197_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	5.0e-42	33.8
WP_082109318.1\|273198_274080_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	9.3e-101	62.2
WP_045585515.1\|274076_274967_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	9.3e-40	39.5
WP_045585359.1\|274975_276043_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.9e-96	52.0
WP_045585360.1\|276116_276668_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	7.2e-35	44.6
WP_082109319.1\|276671_280244_-	glycosyltransferase	A0A0N7G7L1	Chrysochromulina_ericina_virus	2.0e-08	24.8
WP_045585361.1\|280378_281764_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.5e-07	25.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP012401

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012401_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012401_1

95083-95187

Orphan

Consensus_repeat	Method
GCTTGCGGCGGAAGCCGGACGCAAGGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012401_1

>merge|NZ_CP012401|1|95083-95187|CRISPRCasFinder
GCTTGCGGCGGAAGCCGGACGCAAGGGCGGGCGCAGCGTGCCCGCATCCTCGCGCAGCTTCTCCAAGAATCCCTCGCTTGCGGCGGAAGCCGGGCGCAAGGGCGG

>NZ_CP012401|1|1|95083-95187|CRISPRCasFinder
GCTTGCGGCGGAAGCCGGACGCAAGGGCGG	GCGCAGCGTGCCCGCATCCTCGCGCAGCTTCTCCAAGAATCCCTC
GCTTGCGGCGGAAGCCGGGCGCAAGGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012401.1\|WP_045581977.1\|95322_96438_-\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP012401.1\|WP_045581973.1\|102039_102876_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP012401.1\|WP_045582642.1\|97302_98469_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340913
NZ_CP012401.1\|WP_045581981.1\|90353_91214_-\|pyridoxal-kinase-PdxY	unknown	unknown	gnl\|CDD\|235592
NZ_CP012401.1\|WP_045581978.1\|93807_94206_-\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NZ_CP012401.1\|WP_045581971.1\|105527_107039_+\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NZ_CP012401.1\|WP_045581986.1\|82395_83313_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP012401.1\|WP_045581984.1\|84020_85718_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP012401.1\|WP_045581983.1\|86647_87820_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NZ_CP012401.1\|WP_045581976.1\|96508_97120_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP012401.1\|WP_045582643.1\|81289_82396_+\|2,3-butanediol-dehydrogenase	unknown	unknown	gnl\|CDD\|176195
NZ_CP012401.1\|WP_045581980.1\|91446_92316_+\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NZ_CP012401.1\|WP_045581979.1\|92329_93784_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012401.1\|WP_045581975.1\|98736_100377_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012401.1\|WP_045581982.1\|88061_90311_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274362
NZ_CP012401.1\|WP_045581985.1\|83356_83821_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012401.1\|WP_045581972.1\|102872_104144_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
NZ_CP012401.1\|WP_144428221.1\|101528_101948_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP012401.1\|WP_045582641.1\|100530_101508_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|275035
NZ_CP012401.1\|WP_082108922.1\|104166_105429_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686

Protein	Function_ID	Function_description	E-value
NZ_CP012401.1\|WP_045581977.1\|95322_96438_-\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP012401.1\|WP_045581981.1\|90353_91214_-\|pyridoxal-kinase-PdxY	gnl\|CDD\|235592	PRK05756, PRK05756, pyridoxal kinase PdxY.	2.49891e-162
NZ_CP012401.1\|WP_045581984.1\|84020_85718_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.67157e-37
NZ_CP012401.1\|WP_045581978.1\|93807_94206_-\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	1.64672e-28
NZ_CP012401.1\|WP_045581986.1\|82395_83313_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP012401.1\|WP_045582642.1\|97302_98469_-\|MFS-transporter	gnl\|CDD\|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.77841e-35
NZ_CP012401.1\|WP_045581983.1\|86647_87820_-\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	4.40825e-154
NZ_CP012401.1\|WP_045581976.1\|96508_97120_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	8.80318e-140
NZ_CP012401.1\|WP_045582643.1\|81289_82396_+\|2,3-butanediol-dehydrogenase	gnl\|CDD\|176195	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.	0
NZ_CP012401.1\|WP_045581980.1\|91446_92316_+\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	7.65524e-82
NZ_CP012401.1\|WP_045582641.1\|100530_101508_+\|glycosyltransferase	gnl\|CDD\|275035	TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family. Members of this family are glycosyltransferases restricted to the archaea. All but two members are from species with the PGF-CTERM/archaeosortase A system, a proposed maturation system for exported, glycosylated proteins as are found often in S-layers.	9.6686e-63
NZ_CP012401.1\|WP_082108922.1\|104166_105429_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	5.61387e-179
NZ_CP012401.1\|WP_045581982.1\|88061_90311_+\|PAS-domain-S-box-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	3.10962e-53
NZ_CP012401.1\|WP_045581971.1\|105527_107039_+\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NZ_CP012401.1\|WP_045581972.1\|102872_104144_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	4.60536e-174
NZ_CP012401.1\|WP_045581973.1\|102039_102876_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	5.5915e-136
NZ_CP012401.1\|WP_144428221.1\|101528_101948_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	2.05371e-15

>NZ_CP012401.1|WP_045581978.1|93807_94206_-|response-regulator
MPTVLVVDDDPALRLTLRRLLEKAGVEVEEAADGDEAMRLFRARRPDLVICDVVMPYVDGLRTIMTMRRLAPAAKIIAISGGGRSKAMDLLAAARQMGADHALVKPIEKSQIALIVDFCGRDPGPSPSPRLP
>NZ_CP012401.1|WP_045581979.1|92329_93784_-|hypothetical-protein
MSIKSIRRRLRQWFRQVEATGGPRPPAVASPSTENGRPSAAGQELRGLEQRLWRLLMQPAVASAGRVHLLDLGMMRECLGPNWPDLRWRVFSAADALIERSLTRNDIRFRTSSDDYIIVFASLERHAAALVCARIAQELLQLFLGDDRTADIRVSTAVGVVDGHIQFDHAFAKALLADALPQAERRTGGGPVLSTSGTAIGGAVDGSTAMSGALSHADEATGKAQVALRQLRLSPDDAGQFGIRYRPVWDIGQMVISTYMGTPVRIFPDGSFLEGAAALTSVTDAMEILRLDAEALVGSVEILNGLFRSKSRLLMSVPVCFETLAARRTRQPFLEICQSIPDYLRRFLIFELLRFPPGVPTGRLNELLHEVRPYCRWSFMQVDFKPQSFSGIAGTGLSGVTMTMPADRSAEARLMEEMNSIVLSAERAGLMICVTGLSTTSMVVAARAAGVRLVAGNRIGPPRDRPRAMNRFDWPDLYREEDEG
>NZ_CP012401.1|WP_045581980.1|91446_92316_+|CoA-ester-lyase
MATTVRPRRSVLYMPGSNARALEKGRSLPADGLILDLEDAVAPDAKAAARDTIASALAAGGYGRRELIVRTNGLNTPWGYDDLRMAAASGADAVLLPKVESADAVRQAEAVLRQAGAPARQSVWCMMETPLGILNAKEIAGASPAVGALVLGTSDLAKDLHAAHTAQRLPMITSLGLCLLAARAYGLAVLDGVHLDLNDDEGFAASCRQGRELGFDGKTLIHPKTIAACNDAFAPDAEEIAQAHRIIAAHAEAAAAGRGVVLVDGKLVETLHVENARRLVALADAIAAV
>NZ_CP012401.1|WP_045581981.1|90353_91214_-|pyridoxal-kinase-PdxY
MKTVLTIQSHVAYGYVGNRAAVFPLQRLGIDATAVNTVQFSNHTGYGAWTGQVFTAEHIADIVDGIAARGVLPAQDAVLSGYMGDVSLGQVIVETAARVKAANPKAVYCCDPVMGDVGRGFFVRPGLPEFIRDHAVPAADLMTPNQFELEYLTDRRVATLDDALAATAALRARGPRLVLVTSLTRSDADPDCIEMLVDGTDGAWLVATPRLTFDPPPNGSGDAVAALFLAHYLSVFDPADALEKAAAAIFAIFEATKRMGTRELQLIAAQDEFVNPSRRFSATRLR
>NZ_CP012401.1|WP_045581982.1|88061_90311_+|PAS-domain-S-box-protein
MAVPGSDSLPSQHLAGLARALRGRLGSIRFLITASGLAFILVVDALIGYGLIQGRHEALDAGERATRDLARMLESQTMRTAFAVDQLLRDLTFALDTLPDGGRRGDPLIHDHLRQRRTAFAEVSGLLVVGRDGFALHHSADTPLPPVALSDRSYFTEPRDQPDRQLFVGAPIASRVAPGTRVIPFSRRWESGKEEIGKNGGDGFRGVVVAMVDTTRLAATLESQGIDRKGSVILALEDGTLLLERPQDRHRIAQLADWPAVWRMLAERDEATIRTAAPGSPTNAAGTPTGVDSLISVRRVQGYPFVIVATLPVAAVLADWQRDAAAWTAIGTVMTIAIALLTAFVVRQHARREEDQARLGRASRRIRGILDSMLDAVVTFDTAGRIVTFNRAAESMFGIPEREMVGQPIEALIPDARGGANDRDLTALRRDGLAFPVGFTVSDLRLDGSPGAPAVRPASFGTLEPDEPRIYVGVIRDMTRRKQQEAELIASKTQAELANRAKSEFLANMSHELRTPLNAIIGFAEVLDSEFFGPMNDRQKSCVADVHDSGQHLLDIVNAVLDMSKLEAGRFELCEEAVEAHEAVAQCLMMVRDRAASGGVALNNGITAVVAMLWVDRRAFKQVILNLLSNAVKFTPAGGSVTLAADFEGDGGFRLEVTDTGIGIPPDFMADLFQPFRQAENSANRRFEGTGLGLSISKNFVDLHGGTLTCRSTTGAGTTMTVRLPASRVIDHPARTGSQVAGHAAGGAA
>NZ_CP012401.1|WP_045581983.1|86647_87820_-|cell-division-protein-ZapE
MTDGPLSLYRARRGSGTLRPDPDQELAAEKFQSLYQALKGYQPQPSGDGRPSGGSWLERFGLGRRRAAPPPPDIAATAPQGLYIYGSVGRGKSMLMDLFYETAPVEKKRRVHFHEFMLEIHQRIHDHRQSGRGKGDGPDEALPELARALADEAWLLCFDEFHVTNIVDAMILGRLFTNLFDLGVVVVATSNWPPDMLYKDGLQRELFLPFIALLKDKLDVLSLDGPTDYRLDRLKGVPIYHHPLGATSTAALATAFSDLTGGAAGEPTSLTVQGRRVEIARAAKCVAWVDFWDLCGKPLGAADYLGIATHFHTVLIDRVPTMKDELRNEAKRFMTLIDALYEHKVNVVIAAEGPPERLYPEGTHAFEFERTVSRLMEMQSEDYLQRQHLT
>NZ_CP012401.1|WP_045581984.1|84020_85718_-|methyl-accepting-chemotaxis-protein
MLGWFSNQKMIVKILTPVFLLLMIMGVIATVSLQRLALLQEVADTALTVEASRRVTILEIGRHMNAATIAEKNAILEKDEGEMRRFIATFNEEMALVDKEISSLALTATTDIRRGTGERIKQLVEAYRRNAAKVLDLTLQAKDDEAFALSAGEGAKTRVAASKLIEERVEVNRQGMETAIRETRTVAEETHRVVLLLTAAGVALGLSLSLAIVIYLIVRPLRAVTDTMNRVSQGDLDVEVAGAERRDEVGLLARTLDIFKTNAREARRLTAEQEEQKARAAAALKDEMRKLADRFEGSVSAIVQHVASSAQQMRGAAGSLSASATQASAQSVAVAAASEQSSANVQTVAAATEELAASIQEIGRQVTNQTAISATAVQEADRTNATMQILVETASQIGAVVDLINSIAGQTNLLALNATIEAARAGEAGKGFAVVASEVKSLATQTARATEGIQAKVKEIQSATAEAQGAVSGIAGIIGRMSEISSAIAAAIEEQNAATAEISANVAQAARGSEQVSTNIVGVTQAANETGSAANQVLSTADGLASEAERLKTEVTGFIATVRAA
>NZ_CP012401.1|WP_045581985.1|83356_83821_-|hypothetical-protein
MMTRFIVLGCLLAAGMAGCTPRPYFETTTTYVPPASEAGRLCVAQCRQAQSICESAKELAIQTCRAESLTRAHADYQAYLKSLPKDFNRKKMKSIGDFDRGSSCSSNLYCSYDYKECFKSCGGRIEQQTYCVKDCKLMKPPQPDGAAVGPKTAL
>NZ_CP012401.1|WP_045581986.1|82395_83313_+|lipoyl-synthase
MALPALHVKAARPEHRADRPDWLRARAPAGAAFEDTQSLVRRHRLNTVCEEAACPNIGECWSKRHATVMILGSVCTRACAFCNVATGRPDALDPHEPDRLAEAVGELGLAHVVITSVDRDDLPDGGAAHFARCIRRLRDTAPTTTVEVLTPDFRNKPGAVETVADARPDVYNHNLETVPRLYADVRPGARYYGSLRLLDRAKERDPSIFTKSGLMVGLGEEPAEVLQAMDDLRAAGVDFLTIGQYLRPTPRHHPVARHVTPDEFERYATVARAKGFLMVSATPLTRSSHHAGRDFAELRRAAAKG
>NZ_CP012401.1|WP_045582643.1|81289_82396_+|2,3-butanediol-dehydrogenase
MKAAVWHGRKDIRVEDVPLPGAPPAGWVQIKVHWCGICGSDLHEYVAGPVFIPVDKPHPLTGLKGQCILGHEFSGEIAALGDGVTGFTVGDRVAADACQHCGECYYCKHGMYNICERLAFTGLMNNGAFASLVNVPAELLYRLPDGFPTEAGALIEPLAVGMHAVKKAGSIVGETVVVVGAGTIGLCTIMCAKAAGAGRIIVLEMSAARKAKAMEVGATVVLDPKECDAVAEVKALTGGYGADVSFECIGHRDTAKLAIDVIRKAGKAVLVGIFEEPSSFNFFEIVATEKQVIGSLAYNGEFADVIRFIADGRIDVQPLITGRIALDDIVSGGFEELVAHKDRNVKIIVQPGQPGRVAALAAEPELVH
>NZ_CP012401.1|WP_045581977.1|95322_96438_-|3-isopropylmalate-dehydrogenase
MAANKKLLFLPGDGIGPEVMRQVRRVVDWMDRKRKITFDVSEGLVGGAAIDAHGVPLSDATLAEALAVDAVMLGAVGGPKWDNPTDYTKRPEAGLLALRKELGLFANLRPAVVFDALVDASTLKADVIRGLDILIVRELTGGVYFGEPRGITDIGNGERRGVNTQVYTTSEIRRVARVAFELARKRGNKLCSMEKANVMESGLLWRQEVTKLHQEEFQDVELSHMYADNGAMQLLKNPRQFDVIVTDNLFGDILSDEAAMMTGSLGMLPSASLGAPDADGNRKALYEPVHGSAPDIAGRDLANPCATLLSFAMCLRYSFNLDEDAKLIERSIQNVLGGGMRTADIMAPGMARCSTTVMGDSILRELDKLAS
>NZ_CP012401.1|WP_045581976.1|96508_97120_-|3-isopropylmalate-dehydratase-small-subunit
MDKFTVLTGVAAPLPMINVDTDMIIPKQFLKTIKRTGLGKHLFDEMRYTPEGQEIPDFVLNKAAYRKASILVSGDNFGCGSSREHAPWALADFGIRCIIAPSFADIFYNNCFKNGILPIKLPKEQVDLLLDDASRGSNAVITVDLEKQTITGPDGGSISFELDPFRKHCLLNGLDDIGLTLQQSAHIDGYEGKQRAGQPWMWG
>NZ_CP012401.1|WP_045582642.1|97302_98469_-|MFS-transporter
MSQLVCWGVSYYVIGLFGETMAADLGQGLPTIHGGFTVALVVMGLVSPGVGRAIDRHGGRPVMVTGSLLMAAGCLGLSLAHGLAAYYGAWVLLGLAMRMALYDAAFAALARIGGRAARTPISQITLLGGLASTVLWPVGQGLADVLGWRGALGVYAVLALATVPLHLLIPPDRHVPDRQVSEGRAPENGAESAPPMPVPPSLLASVLYALIVALTGMLNSGLSAHMIGMLAGLGMAPALAVWVSTLRGVGQSAARLAEIRFGRRLSAFGLGILATGLILPCFPLPAAFGAAPAAGIAFALLFGAGNGLVTIVRGALPLALFDPARYGQTVGRLITPGFFVSALAPLLFALVIERFGDAAALWLSFLLAVAAFVASLVLALRFGPRRRA
>NZ_CP012401.1|WP_045581975.1|98736_100377_+|hypothetical-protein
MPPFDDDRRARLTGRIFLLLAPAAYGLLTLAFGMDANWDLRNYHWYNGYALLTGRIGRDLLAAQMPTFYTPFLDAPFYWLATHLPARAAGFLWGTLQGVNLSLLFLLASSCMRNIPVRQRTMAAMALAVMGGLGGGTLGLIGTSFQDNVVSLGVLGALAVVAHGLPGILDGRPLPSFARVAAAGLLAGAAMGLKNPTVIYAVGLCLAFLALPARPWRRLWLAFFFGIGVLTGLALGGGLWMAHLWHDYGNPVFPHMNHIFKSPFAAISDYVNVAFFPPNLWERLFFPVVFTFSPLTVGEVPWFDLRVLALFVLVPAGFAGMLAGRSMRKRNDWLTDKPATRFLLVALSITYALWVAMFCIYRYLVPLEMLAPLALVMAVGLLPLARRLRIGLAVALLALVQLTVQPADWGRIPWPAGADQRWVQADVPPIDDPDDTMVLMAGYWAISHVIPSFPSRVTFVRIQSNFLQPDSVGNGYLAIMKDKLSAHRGPFLMLSTIPDTAGAAKAAALVGLRLDPQRCRIVANNLGEPLNLCAVDRMAGNRETME
>NZ_CP012401.1|WP_045582641.1|100530_101508_+|glycosyltransferase
MTAAETGPAPTIAVLIPCYNEEAAIGSVVRDFRAALPDAIVYVYDNNSKDRTVEVARAAGAVVRSEPLQGKGNVMRRMFADIEADVYVLVDGDDTYHAASAPLLVKRLWDEQLDMVNGARVTEIVAAYRPGHRFGNLVLTGMVARIFGSRIGDMLSGYRVFSRRFVKSFPALASGFETETELTVHALELRMPIAEVKTPYKDRPPGSHSKLNTIRDGIRILRAIVMLVKEERPLPFFSALFGLLALLSMVLGVPVIATYFETGLVPRFPTALLATGLMLLGFLSLTCGLILDTVTHGRREAKRMHYLSQRAPGNHPPLAQPGTRR
>NZ_CP012401.1|WP_144428221.1|101528_101948_+|GtrA-family-protein
MAGVLDSRLGRLGVQFAKFGAVGIVGLAVDTAVLYAGLALGLEFFAARIPSFFAAATATWALNRAFTFRGAAVEPLHRQWAKFIAANAIGGVINYGVSVGLESGVQLIAEHPFLAVAAGSIAGMFFNFAASKHLVFKGA
>NZ_CP012401.1|WP_045581973.1|102039_102876_+|diaminopimelate-epimerase
MTREFLKMHGLGNDFVVIDARSEPYRPSGAEVRAIADRKTGVGCDQFIILEHTDAPGADAFMRIHNADGSEVGACGNASRCVGWLLMTESGRDRTSFQTEAGLLHASRADNGRITVDMGAPRLDWAAIPLATPTDTLRVETVEHGGFAAPVAVSMGNPHAVFFVDDAEAVPLTEVGPVFENHPAFPERANIEFAQVLSPTAIRMRVWERGAGITQACGTGACATLVAAARRGLTGRKADILLDGGTLTIEWTGEDRVLMTGPVALSFSGRLSAELASA
>NZ_CP012401.1|WP_045581972.1|102872_104144_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MSDGTDSTTQAGPEIVTFGCRLNSYESEVMRNHVRSAGLDDVVIVNTCAVTSEAERQARQTIRKLRRERPDARIVVTGCAAQIDPQRFAAMPEVDQVLGNQEKLQPESWGLPPTEKVLVNDIMSVKETAGHLIGGFEDRARAFVQVQQGCDHRCTFCIIPYGRGPSRSVPIGGIVEQVQALVKAGYNEVVLSGVDITSYGPDLPGAPSLGQMVRRLLACVPELPRLRLSSLDCIEMDDDLWRLIETEPRLMPHLHLSLQAGDDMVLKRMKRRHGRADAIAFCERVRRIRPDVVFGADFIAGFPTETEEMFQNTLRLVEECGLTWLHVFPYSPRPGTPAARMPQVDGAVRKERAARLRAAGETAEAGKLASLVGRNATVLVEKDDLGRTEHFAAIRLGRIFPPGSLVPAAITGVENGVLTGAPL
>NZ_CP012401.1|WP_082108922.1|104166_105429_+|signal-recognition-particle-docking-protein-FtsY
MIFRWFGRKKPEETAPKDEAAQDESAGLESATPAPEVEPQPEVEPVPPRVETPAPAPAPAVPVVPVPPTVPAAPVLPAAPPAPEPEPVPELPPAPAPAAVQVPAPAAEEVPPSKKGWFAKLKEGLSKSSSKLTDGITSIFTKRKLDDEALEELEELLITADLGPATAAKVTAELARTRFGKEVSPEEVKSTLAAEVAKIVGPVARPLLLDPALKPHVILVVGVNGTGKTTTIGKLARQFKAEGKSVMLAAGDTFRAAAVSQLKIWGERTGCPVVARDTGADAAGLAYEALERARAEKVDVLLIDTAGRLQNKTGLMEELRKIVRVIKKLDETAPHTTLLTLDATTGQNAHSQVEIFRDMVNVNGLILTKLDGSARGGVLVSLAEKFKIPVHAIGVGEGVYDLRPFDADAFAKSLMGLNAE
>NZ_CP012401.1|WP_045581971.1|105527_107039_+|AMP-nucleosidase
MTEKAPLQPGSAGRFTDAKAALACVRDIYERNTVFLRDRFAAYTQGEEEGGRNRACYPYVRLTAISGAAADTRLSYGFVEGVGVHSTTVTRPDLFERYLLEQFTLLLRNHDVPLEVGVSEEPIPIHFAFPQGMYVEGDLPPDRLTKLPDLFDLPDLARMDDTIVNGTCDTGLDAVKPLALFTAPRVDFSLHRLRHYTATAPEHFQNFVLFTNYQFYVDEFIRLSREIMEPTGDAELAAYRAQYDSFVEPGDIVTANLNLGGAAADVASVKLTRMPQMPAYHLKRPDGNGITLVNIGVGPSNAKTITDHIAVLRPHAWLMLGHCAGLRHTQRLGDYVLAHGYVREDHVLDADLPLWVPVPALAEVQRALETAVERVTGLSGFDLKGIMRTGTVATIDNRNWELRDHREPLMRFSQSRAIALDMESATIAANGFRFRVPYGTLLCVSDKPMHGQLKLPGMADRFYRERVDQHLKIGVLAMELLREHGMETLHSRKLRSLAEVAFQ

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Crispr_ID: NZ_CP012401_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012401_2

2084769-2084893

Orphan

Consensus_repeat	Method
CGCCTCGCCGCCGATGCCGACGCGCAATCCACCGCGGCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012401_2

>merge|NZ_CP012401|2|2084769-2084893|CRISPRCasFinder
CGCCTCGCCGCCGATGCCGACGCGCAATCCACCGCGGCGGATCGGCAAGCGGTCGCCATCGACAAGGCCGCCGTCCATGCCGACCGCCTCTCCGCCGATGCCGACGCGCAATCCACCGCGGCGGA

>NZ_CP012401|2|2|2084769-2084893|CRISPRCasFinder
CGCCTCGCCGCCGATGCCGACGCGCAATCCACCGCGGCGGA	TCGGCAAGCGGTCGCCATCGACAAGGCCGCCGTCCATGCCGAC
CGCCTCTCCGCCGATGCCGACGCGCAATCCACCGCGGCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012401.1\|WP_045580499.1\|2089283_2089739_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP012401.1\|WP_045580506.1\|2074616_2074991_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012401.1\|WP_045580511.1\|2071871_2072897_+\|major-capsid-protein	unknown	unknown	gnl\|CDD\|377147
NZ_CP012401.1\|WP_045580509.1\|2073236_2073539_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012401.1\|WP_045582338.1\|2093015_2094260_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP012401.1\|WP_158511055.1\|2086442_2086820_+\|DUF4376-domain-containing-protein	unknown	unknown	gnl\|CDD\|373004
NZ_CP012401.1\|WP_045580503.1\|2081919_2083494_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012401.1\|WP_045580507.1\|2074053_2074533_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012401.1\|WP_045580500.1\|2088709_2089129_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP012401.1\|WP_045580510.1\|2072900_2073230_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012401.1\|WP_045580508.1\|2073538_2073967_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012401.1\|WP_052709879.1\|2086891_2087653_+\|lysozyme	unknown	unknown	gnl\|CDD\|381599
NZ_CP012401.1\|WP_158511056.1\|2087821_2088028_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012401.1\|WP_045580504.1\|2075275_2081923_+\|tape-measure-protein	unknown	unknown	gnl\|CDD\|131723
NZ_CP012401.1\|WP_052709877.1\|2090384_2091380_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP012401.1\|WP_045580498.1\|2089786_2090377_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP012401.1\|WP_045580496.1\|2092456_2092798_-\|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl\|CDD\|239332
NZ_CP012401.1\|WP_045580505.1\|2075014_2075245_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012401.1\|WP_167543368.1\|2091477_2092503_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_CP012401.1\|WP_045580502.1\|2083497_2084409_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP012401.1\|WP_045580499.1\|2089283_2089739_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.16594e-21
NZ_CP012401.1\|WP_045582338.1\|2093015_2094260_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP012401.1\|WP_045580511.1\|2071871_2072897_+\|major-capsid-protein	gnl\|CDD\|377147	pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.	1.37223e-72
NZ_CP012401.1\|WP_045580496.1\|2092456_2092798_-\|arsenate-reductase-(glutaredoxin)	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	2.09255e-46
NZ_CP012401.1\|WP_052709877.1\|2090384_2091380_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.40217e-27
NZ_CP012401.1\|WP_045580498.1\|2089786_2090377_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	4.66266e-12
NZ_CP012401.1\|WP_158511055.1\|2086442_2086820_+\|DUF4376-domain-containing-protein	gnl\|CDD\|373004	pfam14301, DUF4376, Domain of unknown function (DUF4376). This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.	1.31054e-20
NZ_CP012401.1\|WP_045580504.1\|2075275_2081923_+\|tape-measure-protein	gnl\|CDD\|131723	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.	7.81462e-15
NZ_CP012401.1\|WP_167543368.1\|2091477_2092503_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	9.89217e-175
NZ_CP012401.1\|WP_045580500.1\|2088709_2089129_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.49967e-72
NZ_CP012401.1\|WP_052709879.1\|2086891_2087653_+\|lysozyme	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	2.43547e-62

>NZ_CP012401.1|WP_045580502.1|2083497_2084409_+|hypothetical-protein
MATGLLAHINELSEQDCAISGTPADWAATAPLDALKTLPLVDAAVSTRIGSRDEPLVLEWEWPRPIDLTYAGLYRTNLWKTGRVRLEAFKTSARTSLAFSTQSAGGIDRLVLPGLYDPKTLRFGGENTVLGQLGAREFLRYPTNIHVVMPLCSAQVLRWTIYGPAYRVTGSHYSTTEQAYRIGFGWAGDSLAIDRHVGASADGYRRGGKVTELAGGGVAVEPGRGRRTATLDRTVNEAGDRDRLFDLVTFLDADRPAVWLPDTDSAFDCYRYGGLFQVIEDFSQKYLNDLHSAATISLGEVTT
>NZ_CP012401.1|WP_045580503.1|2081919_2083494_+|hypothetical-protein
MTTVRLVDLTLFHRPSGHRHRLPLASFPGYQSGPADDPPNVTWLPLVTAGADAAVSIGSLGAADGQAELRIGDLVLRNEASRNPAQRFASLQDLDTGQWLRVALDDRPLDLLLAGDYVIQSVAEREIEDGAPLADAVTIWTARAGQPKPKRSEIALPIYDARLDFDTPIQTERYQGTGGYEGPAELKDTLKELPLGHCPMARPTYLGIVEGYHRWSVGGGRPVQDVPRGWSSGVAVARQAASVPSDNAHFTADLATGILTTTVRYADFRVEVLGRTFNGTYRRYVGELIAALATGAGLASTVDVAGMDASPRTVGLFLAAGDGTTHAAAYARFVGSVPRGGWYIGTAGQLVVTRVPHPNAAASIRAYSSAAGTTAGLQYVEGRHNPPAKQVVLRCAHNPSPSTAATDATAADATRWTQEWLEVPSTVDAAIAVAWGNAAKVATIETALTFSADAAAELPAWVAELSAPPTLYELPVPDGAPGVWIGDTVTVEDDIAGFAAGAPVVVYGRTIADRSGGATLSVAR
>NZ_CP012401.1|WP_045580504.1|2075275_2081923_+|tape-measure-protein
MADFPGMMVPVGADDSGLRRVLSQAEARVDQFAGRVDGSVRKAAGSFDALGTAAGRVAGVVAGIGLAQGAGEAIKAADAWSLSASKIALYAGAGEKAVAVQEQLFQAAQRARSALEPTVGLYTSLADAALTMGKSQGEVIRLTETISKTFRISGTEAGTAAGALVQLSQAMGSGVLRGDEFNSVMEASPRLAKALADGLGVPRAALKSLAEQGALTADKVVNALLRQSTAIDTEFGRMATTVSDSLIVLANAAQRQIGQLNQATGTTAALSRGLLAVADNFDTLAAGALTAATALGAVYAARGLAPAIGAGAQFVASQVALRKELVSNTGHLLQKEAALRAGAAASVEAAAADVAAAQAAQAKARADLAARATQYEAALALDGAIGRTARLVQAEEALIVARNARAAADLRVTETTAALTMATGAQASAIAGTGVAATVAARGMALLSGAMALVGGPAGAALLAGAAAVAIFATRTTVAEQAASSFEHAQRAAQDAVKDAAGDVERLAREYGRLSDAMRAVTRIKLDEALAEQAKAIAAQRAAASAAVYGADSLARPVSGSWTVSTDSASSARVYETMGLAADQVDRLRTAFAAFHSAAADDPDAIATLVRVLDEVGRTAGAAGKPLQELAQRLADPATKAEAASRTAKELAARLALLADPANEAARAVLAAGQTADGAASRFAGLGSAVGGVASKLAELQGKSWTLSLPAGLERRVGEMVGPPPEQKTPVVTGLQDRGRSDDDTAYQAWDTQRSVARTVLRNRVIPAESAEAVRLLTLEADASEKLAKARTSGNPATIKAAEVEVEVARRLRDGLDPAREADTRAQLLRKARAELAGEVGAQVTQLNQDVAAQQRLAAAAGKGEAAQRAAASANRVAAAGLKGYGDAAASAEAQLEALTVQLLRKDADQPIQDRIRAATALVEAYEQGPKAVKAAELAEQAHTLALKEGEDGTQAYSEAKAHYIGLLTRAQQLESAAAAGPLLQRQRDQLELGQQQLALMGASAEQRALELARTQALIDLREHNIDAASREGQAYLANAEALAWQTSALERTSAAYQELERFGDRSFDAILQKLSAAGKSTMSWADAIATVSVELQQLALKMAVINPVKNAVLGTNLPTLFDLGGGTGGQTGQGGGLAGNLTDTALSKGAGWAADKLGLTSGLDSIMNTPLWGSAVSMSSVGGGATVIGTANPIIGASTGAIQAGSLNAANGVVNAGNTAALNASYSGTASGAAGTAGGTLGGVLGAAGAGAFGGGLVGGALGTATNSKAVGGLSGAVAGAGSAYLASIMGISSLGGPIGLAIGAVVGAIMGMVGTQKASVGPNASGNVVIDGKGGFRTDTALADNGADAGQMQQVTDAVATAMNTVVAGVGGKLTGGDGLNTGLLQFFAKDNKWYVTPQQGENAGKRASFGSQDEAIQYYMRESLKGLIGTGQLIGLDDDTRTALTTSKATTAEGLATDLGFAAGFRQQLDLMNASLDPTNNQIKAFTEAAKAIGDQVRTNITDWRDKAAELGLATETELTAAARKGIEAMMGLGPATKPLVGMAAATKQAEIEFEQFRPALLSLGYTTGEVAELAARYTKKLQDSYADAVATVQRQGAVAIEALIDPTARTGALDRLQGLGLDRTDSAIEGLAGVIDGIERAASAGALTIEAERAALGRLNTALYDGTLSGDQYTAMVGMLTQAWQDSADTAQAAAEKAKALASYRADVTGRMQAAVGNSRGAGLISLDAQQATALAAATAAGYDTTQLRLVQAAERAAQAFQLAQQDVLEAYDREIAARQEVVSAIQSGALALLQAARQFQDARAALREGDDSPLAPRRKIEEATGRFDAAYAVLKDSGSTDADRETARQTLLQLGPTLVALEKAASGGTASSLFDKVDAVFAELGDTGGLSLDTATRDLQVAQDQLSELQKARTEAAALGQRQLGSLSGLRDVLDQSNAVWQAALTPLLQLTGTADSRPRYAAPAAVQTAWDGLSAEQQHGIARAMGWGGDIDEAFNLWLASSTQRAATFGADVTAIADGARYGASESVQRAWDALTEAQRLAAVRGAGYDGGLDAGLNAWVQLGHRAAFEANVLAQAHGAGIPGFATGGISYGPQLAWVSEGAHSAEAHVPLPDGRRIPVALDLRLPGSDLMPPAPIVSFRRPELDAGVAGMAALLAAVEGLRDEVRALGRDALTQRARIGADAAALLARVEAATGDLPRKLANTRRAA
>NZ_CP012401.1|WP_045580505.1|2075014_2075245_+|hypothetical-protein
MFAYATGWLGWSRSEALDAPFPDIQLALDGKVDFLAATTPGARRRTRRKPKDVAELKERARAVFGLKRAEQGMGAG
>NZ_CP012401.1|WP_045580506.1|2074616_2074991_+|hypothetical-protein
MTASSTAPRFAHGVMTIHLDGDDVELFANVRASRTICRLYGGLNQAFTNTNAFDFDTLVNVVNAAAGRVGKAAEATAEAIFAEGVITVAPQVLLYLNFLAGGGKAPKSESVKADSEAAPSGEAG
>NZ_CP012401.1|WP_045580507.1|2074053_2074533_+|hypothetical-protein
MSGNAVQSAGTRLFLSTTALCTTEAQYKALAWTEVEEIEDIGAFGETFEKVTYKTLGDGAVHKKKGTVDYGSGTLKLARVPAGAGQTAIRAAARNRKAAYNIKIEFDDAPDGGTPTTIYLRAYVMSYTTEIGSNDKVIETSVGLEIDAEPIEVAADDGQ
>NZ_CP012401.1|WP_045580508.1|2073538_2073967_+|hypothetical-protein
MHQRTTIRAAIAAALGAVAPVTANRDDPLPADALPCIGLFTPDETAQELTMGSRRQLRRLELYVDGYVRADGTAGDLDDRLDAMALRIEQAMAAGRRFGGLVDRIELLRTVTDRLTSGELKAGVTRLQFAVTYQTGFGQPDA
>NZ_CP012401.1|WP_045580509.1|2073236_2073539_+|hypothetical-protein
MLFDDLNTACAGAFGEPAVIRRPGRPDVTVTGIFDRRHYQQDTDGGPVSTLVTSLAVVDADVGGPVPAGAAIELRGLTFTVSEPRPDGQGMTVLLLRESR
>NZ_CP012401.1|WP_045580510.1|2072900_2073230_+|hypothetical-protein
MARLRLLATVKVDRETSLRPGAVIEVKDPDDADAASLVARGFARWLKAGDEAGEEGLPPDRIIAAIGRLDPANPRHFKAGKPELKALGELLGVDVTADQRDRAWAALQG
>NZ_CP012401.1|WP_045580511.1|2071871_2072897_+|major-capsid-protein
MDIYSTLAMLGVLRSLRAKAPRFLLDMFFPLASFSDTGKILFDVEVDDVEVAPFVSPLSAGRVGSDSGYETRMFAPAYVKPLHDIKPDEPLRRLAGEPLGGALSAGAREQAILGAKLQRQLTQILRRKEVMAAEVLRTGKCVVKGPDYPEVLVDFQRAGELSLLLSAAARWGEAGVSPFADLSEWIDLVGRKSGAAVNVVVMDAKAWALFEADPKLEKVLDRTLGQAAIVQMGFQPGVPGTPVFKGRIGMVELYTYNDTYTDGGTTRALLPDHTVLLGATGAMEGTQAHGAILDPRAGYQALEVFPKSWIEENPGRRLLLSQSAPLVYPRRPNACMAVTVR
>NZ_CP012401.1|WP_158511055.1|2086442_2086820_+|DUF4376-domain-containing-protein
MQLVEPIPLAEMKAVRKASATELRWQQETRGIVIAGVPVATDDRSKTLILGKRAQAQADPAMIFRWKAASGEWVDLTGAQIIAVADAVADHVQACFDREGELHDAIDAAETAEAVLTVDIAAGWP
>NZ_CP012401.1|WP_052709879.1|2086891_2087653_+|lysozyme
MRAIPQAAVDLVKEAEGLRLTAYPDPATGGAPWTIGYGHTGPDVRPGLRISEAQAEQQLQADLDAAAAVVDRAVTAELTDAQRGALVSFVFNVGAGRRAKGKDAGKDGFVTLKTGQPSTMLRKLNLGDAAGAAAEFAKWTRGAGKVMPGLVKRRAAEAALFLADEAHPVSRGAELAPAMKPMARSVSAVSGGGALGLAGVAVLLDQARDVSTAIKGLLQALPSGAMGWAVAALLGLAVAVMLYRRWDDQRKAA
>NZ_CP012401.1|WP_158511056.1|2087821_2088028_+|hypothetical-protein
MGLRMICAGILLALLSGCATSGAGTEGGCAAFRPIYTSRADMLTDGTAEQLLAHNLTGARLCRWAPVR
>NZ_CP012401.1|WP_045580500.1|2088709_2089129_+|organic-hydroperoxide-resistance-protein
MKTLYSTKVTATGGRDGKAVSEDGLLSVALAAPKELGGQGGATNPEQLFAAGYSACFIGAIKFVGNRDKIAVPADLTVNAKVGIGARDDGEGFGLTVDFVVSLPGMDSAVAEDLLARAHKVCPYSHATKGNIPVTTTVA
>NZ_CP012401.1|WP_045580499.1|2089283_2089739_+|MarR-family-transcriptional-regulator
MTADKDDPLLLSNQACFALYSANLAMTRVYRPLLESLGLTYPQYLMMLLLWEEDDQSMKVLGERLGLDSGTLTPLLKRLEGQGLVSRARDPQDERLVRVRLTAEGTALRGKAECLPARITAAAGCSAPELGPLRDALLRLRDDLNRAADRG
>NZ_CP012401.1|WP_045580498.1|2089786_2090377_+|GNAT-family-N-acetyltransferase
MTEDRLRIRPADADDAPDLARLIDIAGGGVYAFLLDGLMPGMSAAEMLMPGLAGRSGSLSHRQSGVAELDGRVIGIAHGYPTDWIRTEDYSGLPPDRVAHMATFSETLDWGSYFLSALTVDPAWRRQGIAGRLLGWFYERARTGGFNRVTLHVWADNAPARRLYAGEGFEEIGQADIPWHPRLPHHGGSILMRRHL
>NZ_CP012401.1|WP_052709877.1|2090384_2091380_-|alpha/beta-hydrolase
MTRRTHDIRHSGAVKAFGIAALALGGLAAVNTLVARRDERRHPPEGRFLTVDGVRLHYLEAGSGPPVVLLHGNASTLDDFLASGLFDRLARSHRVIAFDRPGMGYSKRPRGCDWTPEDQADLLARAFVVLGIEQAVVVGHSYATLVALALALDHPDSARGLVLLAGYYFPTTRVDALMVAPVATPVLGDLLRHTLSPPFSKAMMPLMLKAMFSPQPVPDGLTGTFPAALITRPGQLRANAQDGVTMAPAADRLQHRYAGLSLPVVVVAGHDDRVVTQEEQSSRLHHVLPNSTLHWVPGAGHMVHYADPDLVADCVDRLSVENAPAEPLIAE
>NZ_CP012401.1|WP_167543368.1|2091477_2092503_-|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MPASAARRSRCWKSCKPAIIRRPHPHRSLPPVTTKHTAAAAAAELKTIRDFLRYGVSRFNEADLDYGHGTTTAFDEAVFLVLETLHLPVDQLEPYLESRLTAAEREAVAGILHARIDTRKPAPYLLNKAYIQGIPFYVDERVIVPRSYIGELLFSDLFGGDDFTLVEDPTSVERVLDLCTGSGCLAILAARIFPEAQVDAVDLSPDALEVAKRNVADSGFEDRITLHQGDLFAPLKTRKYDVIITNPPYVDAEAMEALPPEFRAEPALALAGGDDGLDIVRRILKEAPKHLTPDGGLLCEFGTGREILEAEYPHLDFLWLQTANSFGEVFWLTREQLKAGK
>NZ_CP012401.1|WP_045580496.1|2092456_2092798_-|arsenate-reductase-(glutaredoxin)
MSDVTIYHNPRCSKSRETLELLRSRGVEPVVIEYLKTPPTADELTAILAKLGKKPRAVTRAKEAAEAGIARELDGAALVAALSAHPAAIERPIVVRGDHARIGRPPESVLEIL
>NZ_CP012401.1|WP_045582338.1|2093015_2094260_+|phosphoglycerate-dehydrogenase
MTKLSLSKDKINILLLEGVHDNAIDELARGGYASVERLPRALDEAELLERIGSVHILGIRSRTHLTAKVFEAASKLITVGCFCIGTNQVDLKAARRHGVPVFNAPYSNTRSVAELVIGEIIMLMRGIFEKSQLVHGGGWMKSAKDSYEIRGKTLGIVGYGHIGTQVSILAEAMGMQVRFYDTVRKLALGNARACDSLEELLSVSDVVTLHVPDTPQTRDMIGERELAAMKKGSHLINAARGQVVQIEALAAAMKSGHVLGAAIDVFPVEPGSDKDEFQSALRGIKTAILTPHIGGSTMEAQANIGTEVAQKLIEYSDNGSTVGAVNFPQVALPVQAGCTRFLHVHENRPGMLRKVNEVFSGRDLNIAAQYLQTDPELGYVVVDVNGDVDELEVTNDLRTIEGTLKARFLFPSHR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

451529 : 501454

Pseudomonas_phage(33.33%)

integrase,portal,capsid,protease,tRNA,terminase

attL 451436:451457|attR 467123:467144

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
451436:451457	attL	NA	NA	NA	NA
WP_045581715.1\|451529_452777_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VP19	Pseudomonas_phage	3.3e-11	28.3
WP_045581714.1\|452976_453417_-	hypothetical protein	NA	NA	NA	NA
WP_045581713.1\|453587_453896_+	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_045581712.1\|453911_454346_+	transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	4.8e-26	48.8
WP_144428107.1\|454551_454980_-	hypothetical protein	NA	NA	NA	NA
WP_144428108.1\|455091_455484_+	hypothetical protein	NA	NA	NA	NA
WP_144428109.1\|455775_456255_+	hypothetical protein	NA	NA	NA	NA
WP_052710038.1\|456352_456580_+	hypothetical protein	NA	NA	NA	NA
WP_045581710.1\|456579_457473_+	hypothetical protein	NA	NA	NA	NA
WP_052709972.1\|457465_459160_+	hypothetical protein	NA	NA	NA	NA
WP_167543363.1\|459295_459463_+	hypothetical protein	NA	NA	NA	NA
WP_045581708.1\|459459_460059_+	hypothetical protein	NA	NA	NA	NA
WP_082108904.1\|460243_461479_+\|portal	phage portal protein	Q8W629	Enterobacteria_phage	3.0e-57	34.4
WP_052709971.1\|461471_463055_+\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	1.3e-23	29.4
WP_045581706.1\|463068_463494_+	hypothetical protein	B0VK34	Azospirillum_phage	2.9e-39	60.3
WP_158511029.1\|463514_463664_+	hypothetical protein	NA	NA	NA	NA
WP_052709970.1\|463666_464299_+	hypothetical protein	NA	NA	NA	NA
WP_045581705.1\|464295_464655_+	hypothetical protein	B0VK38	Azospirillum_phage	1.2e-27	60.7
WP_158511030.1\|464857_464992_+	hypothetical protein	NA	NA	NA	NA
WP_045581703.1\|465093_465495_+\|terminase	phage terminase small subunit P27 family	A0A1B3AYP2	Gordonia_phage	2.8e-12	39.3
WP_045581702.1\|465491_467087_+\|terminase	terminase large subunit	B5WZR8	Pseudomonas_phage	4.5e-53	31.3
WP_045581701.1\|467547_467727_+	hypothetical protein	NA	NA	NA	NA
467123:467144	attR	NA	NA	NA	NA
WP_045581700.1\|467750_467996_-	hypothetical protein	NA	NA	NA	NA
WP_045582580.1\|468133_468919_-	competence/damage-inducible protein A	NA	NA	NA	NA
WP_045581699.1\|468986_469724_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA
WP_045581698.1\|469773_470583_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_045581697.1\|470865_471252_+	hypothetical protein	NA	NA	NA	NA
WP_045581696.1\|471359_471551_-	hypothetical protein	NA	NA	NA	NA
WP_144428110.1\|471551_472205_-	hypothetical protein	NA	NA	NA	NA
WP_158511031.1\|472292_472448_+	hypothetical protein	NA	NA	NA	NA
WP_052710037.1\|472909_474829_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	5.0e-83	36.7
WP_045581695.1\|475073_475517_-	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_045581694.1\|475523_476762_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA
WP_045581693.1\|476958_477912_-	hypothetical protein	NA	NA	NA	NA
WP_045581692.1\|478328_481052_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_045581691.1\|481795_482290_-	GAF domain-containing protein	NA	NA	NA	NA
WP_082108976.1\|482599_485329_+	EAL domain-containing protein	NA	NA	NA	NA
WP_045581690.1\|485353_485833_-	SRPBCC family protein	NA	NA	NA	NA
WP_045581689.1\|485829_486168_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_045582576.1\|486225_486549_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_045581688.1\|486750_488319_+\|tRNA	lysine--tRNA ligase	NA	NA	NA	NA
WP_045581687.1\|488804_489701_+	hypothetical protein	NA	NA	NA	NA
WP_082108901.1\|489947_491135_+	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_045581685.1\|491266_491761_-	hypothetical protein	NA	NA	NA	NA
WP_045581684.1\|492031_493000_+	malate dehydrogenase	NA	NA	NA	NA
WP_045581683.1\|493130_494327_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_045581682.1\|494328_495204_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_045581681.1\|495509_498461_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_045581680.1\|498503_499763_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_045581679.1\|499999_500725_+	hypothetical protein	NA	NA	NA	NA
WP_045581678.1\|500782_501454_-\|protease	YopT-type cysteine protease domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_2

1402677 : 1412484

Lymantria_dispar_multicapsid_nuclear_polyhedrosis_virus(16.67%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045582442.1\|1402677_1403229_-	superoxide dismutase family protein	Q9YMI3	Lymantria_dispar_multicapsid_nuclear_polyhedrosis_virus	6.0e-13	39.3
WP_045581023.1\|1403382_1403805_+	transcriptional repressor	NA	NA	NA	NA
WP_045581022.1\|1403801_1404026_+	hypothetical protein	NA	NA	NA	NA
WP_045581021.1\|1404335_1405154_+	hypothetical protein	A0A1B1IVM8	uncultured_Mediterranean_phage	6.2e-75	51.8
WP_045581020.1\|1405302_1405575_+	hypothetical protein	NA	NA	NA	NA
WP_045581019.1\|1405610_1406180_+	hypothetical protein	Q6J1R6	Burkholderia_virus	3.6e-13	34.4
WP_045581018.1\|1406193_1408089_+	hypothetical protein	A0A0F7L404	uncultured_marine_virus	8.5e-83	32.3
WP_045581017.1\|1408109_1408907_+	hypothetical protein	NA	NA	NA	NA
WP_045581016.1\|1408933_1410964_+	hypothetical protein	E5AGC7	Erwinia_phage	9.9e-13	43.2
WP_045581015.1\|1410960_1412484_+\|terminase	phage terminase large subunit	A0A172JGB2	Citrobacter_phage	2.0e-26	33.7

DBSCAN-SWA_3

2024814 : 2066549

Erwinia_phage(16.67%)

integrase,transposase

attL 2037416:2037435|attR 2068723:2068742

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082108958.1\|2024814_2026140_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_045580546.1\|2026136_2026502_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158511050.1\|2026498_2026822_-	hypothetical protein	NA	NA	NA	NA
WP_045580544.1\|2026993_2027380_-	hypothetical protein	NA	NA	NA	NA
WP_045580543.1\|2028011_2028356_-	hypothetical protein	NA	NA	NA	NA
WP_082108957.1\|2028485_2028752_+	hypothetical protein	NA	NA	NA	NA
WP_045580541.1\|2029020_2029281_-	BrnA antitoxin family protein	NA	NA	NA	NA
WP_045580540.1\|2029377_2029623_+	hypothetical protein	NA	NA	NA	NA
WP_045580539.1\|2030285_2031335_+	hypothetical protein	NA	NA	NA	NA
WP_045580538.1\|2031338_2031617_+	hypothetical protein	NA	NA	NA	NA
WP_158511051.1\|2031616_2031784_+	hypothetical protein	NA	NA	NA	NA
WP_152646953.1\|2031798_2032083_-	hypothetical protein	NA	NA	NA	NA
WP_144428184.1\|2032125_2032689_-	hypothetical protein	NA	NA	NA	NA
WP_158511052.1\|2032836_2033007_+	hypothetical protein	NA	NA	NA	NA
WP_045580537.1\|2033021_2033309_-	HigA family addiction module antidote protein	A0A191ZBZ4	Erwinia_phage	8.2e-06	39.3
WP_082108956.1\|2033333_2033456_-	hypothetical protein	NA	NA	NA	NA
WP_045580536.1\|2033606_2034650_+	hypothetical protein	NA	NA	NA	NA
WP_045580535.1\|2034649_2035213_+	hypothetical protein	NA	NA	NA	NA
WP_082108811.1\|2035266_2036262_+	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_045580534.1\|2036651_2037470_+	hypothetical protein	NA	NA	NA	NA
2037416:2037435	attL	NA	NA	NA	NA
WP_045580533.1\|2037466_2038087_+	AAA family ATPase	NA	NA	NA	NA
WP_052709890.1\|2038091_2038802_+	DUF3102 domain-containing protein	NA	NA	NA	NA
WP_158511053.1\|2038962_2043741_+	hypothetical protein	NA	NA	NA	NA
WP_045580532.1\|2043851_2044103_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_045580531.1\|2044244_2044523_+	hypothetical protein	NA	NA	NA	NA
WP_045580530.1\|2044538_2045306_+	hypothetical protein	NA	NA	NA	NA
WP_045580529.1\|2045408_2045663_+	hypothetical protein	NA	NA	NA	NA
WP_045580528.1\|2045675_2045858_+	hypothetical protein	NA	NA	NA	NA
WP_052709888.1\|2045854_2046853_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_045580527.1\|2046854_2047370_+	hypothetical protein	G8GWC4	Rhodobacter_phage	9.2e-08	31.3
WP_045580526.1\|2047443_2048235_+	DNA methyltransferase	Q775B4	Bordetella_phage	2.0e-25	34.9
WP_045580525.1\|2048231_2048486_+	hypothetical protein	NA	NA	NA	NA
WP_144428185.1\|2048500_2048749_-	hypothetical protein	NA	NA	NA	NA
WP_052709887.1\|2048845_2049592_+	hypothetical protein	NA	NA	NA	NA
WP_052709886.1\|2049712_2050243_+	helix-turn-helix domain-containing protein	V5YUM0	Pseudomonas_phage	9.2e-11	35.1
WP_045580522.1\|2051107_2052052_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_144428186.1\|2052087_2052348_-	hypothetical protein	NA	NA	NA	NA
WP_144428187.1\|2052670_2053141_-	hypothetical protein	NA	NA	NA	NA
WP_144428188.1\|2053449_2053791_+	hypothetical protein	NA	NA	NA	NA
WP_045580521.1\|2053893_2054970_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_045582059.1\|2055426_2056773_+	hypothetical protein	NA	NA	NA	NA
WP_045580519.1\|2056847_2057366_+	hypothetical protein	NA	NA	NA	NA
WP_144428189.1\|2057659_2057896_+	hypothetical protein	NA	NA	NA	NA
WP_045580517.1\|2058025_2058427_+	hypothetical protein	NA	NA	NA	NA
WP_144428190.1\|2059368_2060406_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_144428191.1\|2060424_2061027_-	hypothetical protein	NA	NA	NA	NA
WP_082108808.1\|2061039_2061279_-	transcriptional regulator	NA	NA	NA	NA
WP_082108807.1\|2061425_2062022_+	DUF1376 domain-containing protein	A9YWY6	Burkholderia_phage	7.4e-17	39.0
WP_045580516.1\|2062100_2063099_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_052709885.1\|2063086_2063548_-	hypothetical protein	NA	NA	NA	NA
WP_045580515.1\|2064008_2065034_+	hypothetical protein	NA	NA	NA	NA
WP_045580514.1\|2065026_2065227_+	hypothetical protein	NA	NA	NA	NA
WP_158511054.1\|2065313_2066549_+\|integrase	tyrosine-type recombinase/integrase	E3W8I1	Leuconostoc_phage	5.3e-17	26.1
2068723:2068742	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP012405

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012405_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012405_1

336483-336669

Orphan

Consensus_repeat	Method
TCGGAGCCCATGCCGCCGGTCAGCGTCTCGATGCCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP012405_1

>merge|NZ_CP012405|1|336483-336669|PILER-CR
GCCCGTGCCGCCGATCAACGTCTCGATGCCGATCGCAAGGATGGTGCCGCCGACCGTGCCGATGGTCACCACATCGGTGCCCACGCCACCCGTCAGCGTCTCGATGCCAGACACCAGCAGGGTGTTGCCCGCAGTGCCCAGCGTGACGATGTCGGAAGCGATGCCGCCGGTCAGCGTCTCGATGCCG

>NZ_CP012405|1|1|336483-336669|PILER-CR
GCCCGTGCCGCCGATCAACGTCTCGATGCCGATCGC	AAGGATGGTGCCGCCGACCGTGCCGATGGTCACCACATCGGT
GCCCACGCCACCCGTCAGCGTCTCGATGCCAGACAC	CAGCAGGGTGTTGCCCGCAGTGCCCAGCGTGACGATGTCGGA
AGCGATGCCGCCGGTCAGCGTCTCGATGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012405.1\|WP_045585609.1\|348751_349603_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP012405.1\|WP_052710429.1\|326404_327229_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012405.1\|WP_045585938.1\|346408_347602_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012405.1\|WP_045585613.1\|357204_357918_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP012405.1\|WP_045585605.1\|324604_325843_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340845
NZ_CP012405.1\|WP_045585606.1\|325847_326405_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226975
NZ_CP012405.1\|WP_052710430.1\|327225_330348_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340850
NZ_CP012405.1\|WP_045585610.1\|349847_350606_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187628
NZ_CP012405.1\|WP_082109363.1\|323273_324566_+\|alginate-lyase-family-protein	unknown	unknown	gnl\|CDD\|377511
NZ_CP012405.1\|WP_045585942.1\|354863_356018_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377253
NZ_CP012405.1\|WP_052710432.1\|331676_333635_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|132997
NZ_CP012405.1\|WP_144428393.1\|334056_334740_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP012405.1\|WP_052710427.1\|322185_323268_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP012405.1\|WP_045585940.1\|353343_353679_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP012405.1\|WP_045585612.1\|351990_353202_+\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180775
NZ_CP012405.1\|WP_167543415.1\|356041_357193_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012405.1\|WP_052710434.1\|353744_354365_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP012405.1\|WP_144428392.1\|330372_331584_-\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP012405.1\|WP_045585611.1\|350763_351732_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP012405.1\|WP_052710426.1\|320257_322189_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137

Protein	Function_ID	Function_description	E-value
NZ_CP012405.1\|WP_045585610.1\|349847_350606_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187628	cd05370, SDR_c2, classical (c) SDR, subgroup 2. Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.78318e-81
NZ_CP012405.1\|WP_045585609.1\|348751_349603_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.74545e-36
NZ_CP012405.1\|WP_045585613.1\|357204_357918_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	3.88616e-40
NZ_CP012405.1\|WP_045585605.1\|324604_325843_-\|glycosyltransferase	gnl\|CDD\|340845	cd03818, GT4_ExpC-like, Rhizobium meliloti ExpC and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).	6.84155e-177
NZ_CP012405.1\|WP_052710427.1\|322185_323268_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	8.67469e-19
NZ_CP012405.1\|WP_052710430.1\|327225_330348_-\|glycosyltransferase	gnl\|CDD\|340850	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).	7.07947e-30
NZ_CP012405.1\|WP_082109363.1\|323273_324566_+\|alginate-lyase-family-protein	gnl\|CDD\|377511	pfam05426, Alginate_lyase, Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.	2.66853e-60
NZ_CP012405.1\|WP_045585942.1\|354863_356018_+\|hypothetical-protein	gnl\|CDD\|377253	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase. Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.	2.19074e-05
NZ_CP012405.1\|WP_052710432.1\|331676_333635_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	5.69977e-30
NZ_CP012405.1\|WP_144428393.1\|334056_334740_+\|IS5-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	9.00376e-12
NZ_CP012405.1\|WP_045585606.1\|325847_326405_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|226975	COG4627, COG4627, Uncharacterized protein conserved in bacteria [Function unknown].	1.16628e-10
NZ_CP012405.1\|WP_045585940.1\|353343_353679_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	2.84624e-18
NZ_CP012405.1\|WP_045585612.1\|351990_353202_+\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180775	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase.	0
NZ_CP012405.1\|WP_052710434.1\|353744_354365_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.01182e-25
NZ_CP012405.1\|WP_144428392.1\|330372_331584_-\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.50507e-14
NZ_CP012405.1\|WP_045585611.1\|350763_351732_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.18492e-100
NZ_CP012405.1\|WP_052710426.1\|320257_322189_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	2.13689e-31

>NZ_CP012405.1|WP_144428393.1|334056_334740_+|IS5-family-transposase
MAIWCVGFCGMQWRAIGQLTDIPFGTLYTLFARWTRLGLWRRLLDRLRRTWRLACGDTAEPSAVVIDSRTCPAAPSCFARGVDGGKKIRGVKVHIAVEKYGIPLAIDAAPANVHDTRGIVPVLRQFAGCGFQGPAIGDLGYRGERLAKAAETFGITVRPIARGRKGVFIPTEIAWVVERSFSWIRRYRRLNTIVERTKEHLVAFVQIAFISILARRLKRLVPQEVSA
>NZ_CP012405.1|WP_052710432.1|331676_333635_-|glycosyltransferase-family-2-protein
MIREAVLFLRQHVRNQNRPLPERDALVRGLFDAALCPASTESRSRDAGDVAVPPTIRHALLSALPLTDGAREAGQAQDGLHAMVSVVFADKLFRGALREDAARNGLLKDANRTILAAGNLGEALASPDPSFRVSPGGLAGWWDRMLSVKGRHGTYLCRIGDLAKGLQAGDNPGKSREMMRALGKSDFRLVLVLLHRACERGDWTVAGPLRPYLMIEAARVLASLNANRSAFAIGTRILDDAAYLEVVAETDRLELMGLTARWALRSGNQAVGTRLCRDAFHEVPTRGDLLVRYLSAVFDSDRQTALTLAGVALFNNPLMDKNEALMVAEFLRADGRPVEATAMFSRAAGLSGLQGEHLPGFANLALDRGDREGWFSLLRMYGAMHGLEIDSHDRSIIPAPFAFHRAARDRSGEFPKVSVMMSCFNSAATVERAAGSVLAQDIGDLELIIIDDASTDGSQAVIARLARRDPRVTVILNDANRGTYASKNRGIEQAKGAFLAFHDSDDWMHPAHLRRQLDAMDDRVACSTSNWLRMTGDGHIVFRRGGGYGHLNPASTLFRRELVEAVGLFEEVRTGADSEFLTRIRMRYGWGAVRSLPDCLAIGLHHENSLTQSGSAAFDEHRYSPVRLDYTEAWVERALLGAESCYNQSNLL
>NZ_CP012405.1|WP_144428392.1|330372_331584_-|calcium-binding-protein
MAIDTISGGINGASVTNVMSTLSTTVVRTETVSSTGTTPTTTVPSSAITSILSNPSIVNTSVWNGSGTEVEVVTVSGVDTVAAVSRDNSVLVVTDTERAVSVAGGAGENRLLVGNDVSGTQINTGTGSGTVVGGDGGSVIGTAAEAKATDRFNIVAGRGDDVVITTNGNNTISAGAGNNTVGLFGGNNLVYANGNDTVFAGTGNDTIIAGGGNSILVGGGGNSVLQAGAGNSTLFGGAGNSTLLGGTGQGLLVGGSGNTAMFAGEGASTVSGASTVTLMGGTGNTDMTGSSRGDLLVGGSGNSTLRGGGGDDTVIGGTGNSTLLGGADNNLFVFSTVFGGGHSMIGDFGASSGNKLAVQGYGVSAASLVENAVVQGGNTIIALADGTQITLVGFTGLNTSHFA
>NZ_CP012405.1|WP_052710430.1|327225_330348_-|glycosyltransferase
MPINASDDPAERLDALLDQGRFSEAEELARILLGVPDCHRIALAALARAAAATGDRATALRYAGRARRVAPDDASLAALLGALLIAAGRADEAIPHLDASLAMGAGTEAEMALASARFLTGEAAAAAALVESLLGRLPVRRTPILAGLADQAVHSGTVPGWMALDEIAPNTMRIIGAMRVCSGPGLSLRIAGVADGTLFPNGQLPAAFLERFGIGAGCPDVLLAGFALPMPPGWRGEPVALFLGEVAFLGAPVGTASSEGTGRRAIEGEVSLTGSRLTGWVRRPGGPGRDMTVTVIDERARERIVTAVGGAFHLDLGDSGLTPGRLWVAAAGIPLEGSPVGWTDWPAVARVLGTPKDGEAWRRVLAAGLPPIPMPVDEPPPRQAQARMAAGVDVVIPVYCGRTETMACIAAVLDTTATMPGTVVVIDDASPDAGLTEELRALAASGRIHLVRNPSNLGFPASANRGLAVHADRDAILLNADTLPAGDWWRRLRAAAYSSPGVGSATALSNDASILSYPSGGGPIPDRDGVAARDALAAAANAGLRVEIPTGVGFCWYLRRDCLDEVGALSETRFGRGYGEENDFCLRARRMGWRHVAAADVFVGHVGSRSFGSEKSRLLARNLAALNALHPGYDGLIRRFAAADPLAAARRRLDEARFVAAGADGNVLLLVTFDLGGGVARHVEERCRQREADGLRTLILRPHPPAAGRPARCRVEVYDQPDLKDLVFTPATEAEALCEFLLRAGVAAIEIHHLLNHDPMVDELAGRLGVLLDVVLHDYGPICPRITMIDGSGRFCGGPDEGEDGGRCTRCVALNGSRFGRGLSVAGYRARHATLLRNARTVLAPSRDAADRIRRHVPGAAVTVRSWDDVRPPIPRRPAGRPGGTDAKPWRICVIGAVGAHKGYHVLHDCARDAATRALPLEFILVGHSQDDVGLFATGQVFVTGPYREGEAAGLIAETGADLVFLPSVWPETWCYALSEAWAAGLPVLAFDLGAMAERIRDLGGGWLLPLDSGAGAVNDALLAACRGTVPCLPPPDRSP
>NZ_CP012405.1|WP_052710429.1|326404_327229_-|hypothetical-protein
MMSLPLPAAPPPAGGLCAAASRLSLEPGLYALKVTGGPAAAPGGTMPFILFAEAPGNPAKVAMMGAAPGSAGALVRVGDALAVQVSGGIGRFILTSYTEEGDSERLALEISRLAGAPTTLEGGAAQRPVLAVTATVDLVAHVRNRGDQAATGEGWAGCPEERLWIEAFAAMPRGAVAADAMEYRCITGAGWESPWIEAGTLCGTRGLGIPLMGFAIRLRGAAATAFECMAEGLFLSGARVGPLAGGALCRSDAISDPLIGMNIRLVARPVGGGR
>NZ_CP012405.1|WP_045585606.1|325847_326405_-|methyltransferase-domain-containing-protein
MTRSVFNIGCGPGADARLREHFPAPGWREVRVDADPSCRPDLLAALPQLDGIADGAADALWLSHTLEHLETHEVPAALSALCRVLRPGGVLMLATPDLQAVAALIANDLAEEVLYVAASGPVRPIDMVFGFSPLLAAGRTLMAHRTGFTRKRLARLLAEAGFTGTTVLRRTAEYELFAIAHRSLD
>NZ_CP012405.1|WP_045585605.1|324604_325843_-|glycosyltransferase
MRYLFIHQNSPGQYRHVVRHLASRPGNRVVFVTQNAAQPLPGVEMLTYQPFRQTTPGLHHYLLDLEAGVIAGQMVHELCLRLKREGFTPDLVIGHNGWGETLYIKDVWPDVPLLAYFEFFYRSRQADVGFDPAAPLRPNDGPRLRTKNVINLLGADAADWGQTPTAWQWSLYPPDIGRRISVIHEGVDTRTVTPDPQARLRLPCGRSLTAADEVVTYVARNLEPYRGFPEFMRALPGILRRRPAAQVVVIGGDEVSYGPPLAGAPCHRERLLAELGGRLDTGRVHFLGQVPYGTFLSALRVSSAHVYLTYPFVLSWSMLEAMAAGCTVVGSATPPVAEVVRDGENGRLVDFFDTAALTDAVVGVLGNADARAAFSAAARRTVVERYDLTTVTLPRYLDLLDTLRDGRVPPAP
>NZ_CP012405.1|WP_082109363.1|323273_324566_+|alginate-lyase-family-protein
MSNIPPDASSPSPSGHLAVEGSPAFLSGLGFYDPALAKRLKDAAGRSDAGARAVLAALIDSADRALGTPLRTVLQKTECAPSGDPRDYHSLAPYWWPDPDTKDGIPYQRRDGERLPEADLRAPESLKFDVSRFQGVFDDVTVLAWAHHFTGRADYAEKALAVVRAWFLDEQTGMNPNLDYAQVRRVHRRNRGRPSGVMEAKAIAFLLDAVSLLSAAGAFPDEDRAALTDWCRRYAGWLESSDSGRKECAAQNNHGTCFEMQALSLAAFLKDADAVQKAVERCRGRLADQFTPDGRQPQEETRSIPLHYRLYNLQAWCVVIHLARRSGCDPAPPGSPAHRILAGAVRDVIHDVGVWRRDGSSMEAGDWNIGRRLGRGKLGLLVRAGATLFDIPEPAGMRADPHPTRDPICWELAFGWLPPSESSPPDPVSP
>NZ_CP012405.1|WP_052710427.1|322185_323268_+|glycosyltransferase-family-4-protein
MIGRILYILPAAGYTGGANSVVQEAAGLLRMGLDVSIAVDRRNHAEFAGAYAGLPAVTAAPVLATYDDPAGLAGLLATSKVAICTVATSVPAVIGAWEHLPEADRPRLFYYIQDYEPLFFDPGTEDWTAACRSYEFGGILQGMAKTDWLRDTVEARHSIRVSRVKASIDHGVYFPYLAARGGDQLVLAAMLRPHTPRRAPRRTCRLLNRLAAELGSRVRLVVFGCGPEEMREHGLMLDPAIERHGRIIREQVARILRRTDLFLDLSDYQAFGRTGLEAMACGAAALLPVHGGAGEYVVHGENGYLADTRDEDGLFHTVEAYAAQAPSTRRAMAVAAMATAADYNVEKACISVLGVLLGTR
>NZ_CP012405.1|WP_052710426.1|320257_322189_+|glycosyltransferase-family-2-protein
MTHPTKPRNTTADQGYLDGFDGKTLSGWAWDGGDGFHMVDILLDGRRIGKAVADQYRADLKAAGIADGCRAFRFDLPDGLLTGQRQTLSARLSESGRELNGSPLEIMGFDDDATAPSPDTDLTCNPALAGAAEGETVLRGGLHEAAPGLWLEAVGETPAEVRAARAIIDGLGGTTAGMRFEMPDPPPAHASPAVRLIHAWRPFPYVLAGPLTLTFTLAGSEAGRRSGLSVGIGMVRDGALILFWTTAVRRIPPGTQQVAVAVDAPVLNAAAGRCRAEGGRAVAVVEFRGTGTVTLSPPGLRLGRQHPDAAPTGLRDFEDPAIRAQWTALQRPVAPARPTAITADGSWICADILNVPEIIVPIFNAPQAVAGCLAAIRAATPRPHLLTLVDDGSLEETARLLDSAAAGNPWVRVMRSGRNEGYTRAVNRAVTSSAGHVVVILNSDALVTHGWLDGLLECLETGGDGEAATMIAGPMSNAASWQSVPWTRNAEGWAVHALGPEETPEDRARLLRTVSRRIFPAVPILNGFCLAIRRRLFEDIGLFDEHAFPDGYGEENDFCLRAADAGFAMRVADHVYVHHLKSQSFGTDRRNALTARANTILTVRYGRARLHGIEETMAAQPDLAAVRHAFEVAFARSGGRDDR
>NZ_CP012405.1|WP_045585938.1|346408_347602_+|hypothetical-protein
MSGNRHAARLLCLGHESVLALPDISQDVIDRRIDALFVLNLFEIPRPTVEILCAYIAGFGARPSVIHICLKHPLEEIGARTAEEIRETDRWMVEKRISMWCMCQGSAEQSARLGLTRVFHEPLGLHRWIYTSPAQDGSVDLYKRWMSHDTPGLRRHPYAAMKGQSDAKDAEAAVRNRFLYLGQGWPDHIESGREPVAPAVQRDADAVSAAMMEQPRLHRLEAMDLCGLADRAAGPAWTLDFNRAFTFAFAVENRRRFAAARRNGFGEVFALWGNGWERFGIDAGPMSPLPRNAYHAAKACLDFGSLAYDTAIFPRTLEILKRDGLLVSWQHTDTARLFGAQEDDLTFTDEADAVRLLSELAGDQDRRARVRSAQLDWAFDSLALTAIPPAVTATAQA
>NZ_CP012405.1|WP_045585609.1|348751_349603_+|alpha/beta-hydrolase
MTNGKTEDGFVTAKDGASIYYKDWGPRDAQTVMFHHGWPLTADDWDAQMLFFLNHGYRVVAHDRRGHGRSTQTATGNEMNSYADDVLAVVAGLDLKNVFHVGHSTGGGEVARYLGRHGTARAGKAALLGAVPPIMVKTEASPGGLPIEVFDGFRAALAANRAQFFRDIPSGPFYGFNRDGAKVSQGVIDNWWRQGMMGGTKAHYDCIKAFSETDFTEDLKRIDIPVLVMHGDDDQIVPIADSALLSSKLLPKGTLKVYKGFPHGMATTHAETINADLLAFFKA
>NZ_CP012405.1|WP_045585610.1|349847_350606_-|SDR-family-NAD(P)-dependent-oxidoreductase
MQLTGNTIFITGATSGIGRGLAEAFHKLGNQVIIAGRRKALLDEVTAANPGMKGIELDITDPVSIQAAAERLIAGNPTLNVLINNAGIMPFDDASGVIDDAQAQSIITTNLLGPIRMTSALVEHLKAQPRSVIVNNTSVLAYTPLATTAVYSATKAALHSYTLSQRFMLRDTSVTVQEIAPPWVNTDLIKKGDDPRAMPLDAFIEQTMAALGTGAEEAIVESARSMRDNAGPKEHALVMGFNSYIAENPIPV
>NZ_CP012405.1|WP_045585611.1|350763_351732_-|GlxA-family-transcriptional-regulator
MLTIGFVVFEDFQVMGMAALSAFEMANLVLGRPAYQVHVLSEQGGPVRNSLGFAIETQPFGDGVFDTTVTIGSLRVKPSSSGLLGYLRDAAGTSRRVAGICTGAYVLAEAGLLDGRRATTHWSHARTLQRLYPKVRVEEDRIFSVDGNVWTSAGMTAGLDLAMALVEDDFGAEVAKAVARKLVVYLRRPGGQSQFSALLDLEPRSDRVRRALVHAKENLTNELSVEELAEAANLSPRQFSRLFRQETGQTPAKAVEHLRLEAARVMMEEGRHSMDIVARETGFADRERMRRAFLRAYGQPPQVIRRSVESNRMSMPESTAST
>NZ_CP012405.1|WP_045585612.1|351990_353202_+|acetyl-CoA-C-acyltransferase
MPNSPTQDRIHDPVVIVSAVRSPLGRFQGELAALPAPVLGARVIAAAVERAGLSPAGIDEVLMGCVLPAGQGQAPARQAARGAGLPDAVGATTINKVCGSGMKATMLAHDLIRAGSADIVVAGGMESMTNAPYLLARARGGYRIGHDRLLDHMMLDGLEDAYEGGRAMGDFGEATAQAYGVSRADQDAYAVETLSRARAAVESGAFAAEIVPVAVPVKGGERLVEQDENPLKVSPDRIPTLKPAFRRDGTITAASSSANADGAAALVLTRRSVAEASGLPILAEIRGHATHSQDPAWFTTAPIPAIRKLLDKVGWSVADVDLFEINEAFAVVAMAAQRDLGIAPDRLNANGGACALGHPIGATGARLIVTLLHALAARGLTRGVASLCIGGGEATAIALERVS
>NZ_CP012405.1|WP_045585940.1|353343_353679_+|carboxymuconolactone-decarboxylase-family-protein
MLNWNEYRQQVLTGVGEMGKLSPETVKGYVGLSAADQKKDLLGAKTRELIALAVAVTVRCDGCIAVHTEAAIKNGATREEIAEALGVAVALNAGAALVYSTRVMDAYAAHG
>NZ_CP012405.1|WP_052710434.1|353744_354365_-|helix-turn-helix-transcriptional-regulator
MDPAVFETLRIVPALSAPASLRRAPDDGDRLTVAADWLLRVASDLLAPDRQSVQDCLSLALTRLQRASSEPGTSNQADQGTGHKTGLAAWQVRRVTAHIDAHLAGSIRNRDLAAAAKLNCGYFCQAFKDSFGSPPHAYIVHRRVERAKSLLEGTDMALSQIALDCGFSDQSHFSRIFRRIAGENPRLWRHKRRLDGPAPDTLPEDR
>NZ_CP012405.1|WP_045585942.1|354863_356018_+|hypothetical-protein
MRVAVLWKTPNLGLYSNAPFDDLYNGIGHNNGNLAFVHSICSHLANPVKHFSWGSSAETLRTNADIIVIPCANQLGRHTDYGQMAENLEKSGLPIVAIGLGAQANSYDHDIELSPGTLRWAQVIAASNRSSASSNIYTRGAYTSAQLDKLGITGSLPGGCPSHFLNQAPGLGRKIHANWTEHDLPRSITVAGGHQAWVKTREIEHQLIGLMMDPLAPGQYIVQSMGEMIRASRGLFDGIDPNALKEIHKHTVPHYSFEEFKAWCRNYMRSYYDVPAWMDTLRQQDLTVGCRYHGVALAIQAERMGLTVTIDSRTRELCENTGVPYADAADLTAPLTRKRLKSLIAFDPDAYDRHRADSAGRYLDFLVANRLQPAPFLKSIADGT
>NZ_CP012405.1|WP_167543415.1|356041_357193_+|hypothetical-protein
MTHRIIATALSLGLTVPSAQALTVRTAGEPETVTSWQRDACARSDAPDTPARAFRDAGGTVHLVASHSIARALTGPSLDAVRPNCAIIFQGHGQDDPRLHDDRGWISSFYTADGKTVHALVSNEFHAQKRPALCPSGEYMRCWRNSITAAVSTDGGASFQLSAAPPGHTVATLPYPYSGDAGQRTGYFAPSNIIRHGDHWYAFFWAERFRAQKRGACLLRTDDIADPQAWRGWDGKSFSVRFVRDGQEGDAPETHTCAPVAPGMLQGTVRSVVRHRTSGLFIATLAMSRDGVSGIWTTTSRDLLSWSKPDLLWAAPLLFRYGCGDAAAFDYPALLDPASQSRNFEDAGKTAYVYMTRLNLDKCKITWNRDLIRLPVEIITDKP
>NZ_CP012405.1|WP_045585613.1|357204_357918_-|histidine-phosphatase-family-protein
MSLFPPLAGTVARRRLYLLRHGHVTYYDADGKPLNPKLAALTGRGREEAQAAAALLAGVPLDRVLCSGLARTRQTAEPIAERHGLAVEHHPAFLEIRAGRLSGIPKESREAAYVYGFETATEGGLFAGGDGFAAVRDRAVSAIEALVRQPGWTHLALVAHDGVNRMLLAWACGAGLSALSTFEQDYGCINIVDIDVKEGRILRRMIRAVNVTPANPVKIGLHRSSLEEAFGPLLDLD

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012405_1	1.2\|336597\|42\|NZ_CP012405\|PILER-CR	336597-336638	42	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	94458-94499	2	0.952
NZ_CP012405_1	1.2\|336597\|42\|NZ_CP012405\|PILER-CR	336597-336638	42	NZ_CP039640	Azospirillum sp. TSH100 plasmid p1, complete sequence	227903-227944	4	0.905
NZ_CP012405_1	1.2\|336597\|42\|NZ_CP012405\|PILER-CR	336597-336638	42	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	94692-94733	5	0.881
NZ_CP012405_1	1.2\|336597\|42\|NZ_CP012405\|PILER-CR	336597-336638	42	NZ_CP039640	Azospirillum sp. TSH100 plasmid p1, complete sequence	228293-228334	6	0.857

1. spacer 1.2|336597|42|NZ_CP012405|PILER-CR matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.952

gacaccagcagggtgttgcccgcagtgcccagcgtgacgatg	CRISPR spacer
gaaaccagcagggtgttgcccgcggtgcccagcgtgacgatg	Protospacer
** ********************.******************

2. spacer 1.2|336597|42|NZ_CP012405|PILER-CR matches to NZ_CP039640 (Azospirillum sp. TSH100 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.905

gacaccagcagggtgttgcccgcagtgcccagcgtgacgatg	CRISPR spacer
gtgaccagcagggtgttgcccgcggtgcccagcgtgacgacg	Protospacer
*  ********************.****************.*

3. spacer 1.2|336597|42|NZ_CP012405|PILER-CR matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.881

gacaccagcagggtgttgcccgcagtgcccagcgtgacgatg	CRISPR spacer
acgacctgcagggtgttgcccgcggtgcccagcgtgacgatg	Protospacer
.  *** ****************.******************

4. spacer 1.2|336597|42|NZ_CP012405|PILER-CR matches to NZ_CP039640 (Azospirillum sp. TSH100 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.857

gacaccagcagggtgttgcccgcagtgcccagcgtgacgatg	CRISPR spacer
acgatctgcagggtgttgcccgcggtgcccagcgtgacgatg	Protospacer
.  *.* ****************.******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 14192

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585718.1\|1101_2691_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_082109376.1\|2687_3236_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA
WP_045585720.1\|3644_4595_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_045585721.1\|4621_5515_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_045585722.1\|5635_6592_-	transcriptional regulator GcvA	NA	NA	NA	NA
WP_045585723.1\|6788_7538_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_045585724.1\|7563_8421_+	transketolase	NA	NA	NA	NA
WP_082109378.1\|8375_9437_+	transketolase family protein	NA	NA	NA	NA
WP_045585726.1\|9496_10477_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_144428396.1\|10551_11037_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_045585728.1\|11033_12293_+	TRAP transporter large permease	NA	NA	NA	NA
WP_045585976.1\|12336_13233_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.4e-37	42.5
WP_045585729.1\|13232_14192_+	D-2-hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	5.9e-24	31.1

DBSCAN-SWA_2

19324 : 20440

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585733.1\|19324_20440_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.4e-29	39.2

DBSCAN-SWA_3

30783 : 31863

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585742.1\|30783_31863_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.1e-18	24.5

DBSCAN-SWA_4

35081 : 35831

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585745.1\|35081_35831_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-40	39.0

DBSCAN-SWA_5

38962 : 40121

Bacillus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144428251.1\|38962_40121_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.4e-19	27.4

DBSCAN-SWA_6

56291 : 59757

Enterococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585759.1\|56291_57296_-	AAA family ATPase	F0PIG8	Enterococcus_phage	7.1e-12	26.1
WP_045585760.1\|57400_58060_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_045585761.1\|58156_58807_+	hypothetical protein	NA	NA	NA	NA
WP_045585762.1\|58962_59757_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.9e-18	30.7

DBSCAN-SWA_7

78267 : 82553

Phage_TP(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585990.1\|78267_79254_+	U32 family peptidase	Q6DW11	Phage_TP	4.5e-19	32.1
WP_045585775.1\|79299_80205_+	U32 family peptidase	NA	NA	NA	NA
WP_052710452.1\|80380_81067_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_045585776.1\|81263_82553_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.1e-101	48.1

DBSCAN-SWA_8

87866 : 89492

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167543410.1\|87866_88778_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.0e-10	25.0
WP_045583517.1\|88781_89492_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	6.3e-07	25.1

DBSCAN-SWA_9

92745 : 93804

Mycoplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585992.1\|92745_93804_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	6.7e-21	33.0

DBSCAN-SWA_10

99469 : 100105

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052710454.1\|99469_100105_+	ParA family protein	J9Q7R7	Salmonella_phage	8.2e-06	33.1

DBSCAN-SWA_11

122676 : 130213

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585998.1\|122676_124848_+	formate dehydrogenase subunit alpha	A0A077SK27	Escherichia_phage	6.6e-31	23.2
WP_052710457.1\|125054_125297_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_045585804.1\|125631_126531_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_045585805.1\|126696_127116_+	hypothetical protein	NA	NA	NA	NA
WP_045585806.1\|127237_127780_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	S4TRQ0	Salmonella_phage	4.4e-08	42.7
WP_045585807.1\|127844_128231_-	hypothetical protein	NA	NA	NA	NA
WP_082109389.1\|128490_129339_+	cell wall hydrolase	NA	NA	NA	NA
WP_045585809.1\|129511_130213_+	CBS domain-containing protein	A0A2I6B2H4	Macacine_betaherpesvirus	4.8e-07	26.2

DBSCAN-SWA_12

134422 : 135193

Trichoplusia_ni_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585813.1\|134422_135193_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.6e-11	30.9

DBSCAN-SWA_13

140317 : 141109

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585818.1\|140317_141109_-	taurine ABC transporter ATP-binding subunit	G3M9Y6	Bacillus_virus	1.4e-34	37.4

DBSCAN-SWA_14

154894 : 163329

Klosneuvirus(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082109390.1\|154894_155824_+	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	1.3e-31	32.0
WP_045585829.1\|155810_156872_-	ornithine cyclodeaminase	A0A1V0SL93	Klosneuvirus	1.4e-90	48.8
WP_045585830.1\|156887_157850_-	arginase	A0A1V0SJM8	Klosneuvirus	1.0e-20	32.8
WP_045585831.1\|157985_158432_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_045585832.1\|158530_160036_-	AMP-binding protein	Q75ZG1	Hepacivirus	1.2e-26	30.6
WP_045585833.1\|160032_161199_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_045585834.1\|161380_162202_+	phytanoyl-CoA dioxygenase	NA	NA	NA	NA
WP_045585835.1\|162216_163329_+	alcohol dehydrogenase catalytic domain-containing protein	A0A0K0KVL7	Prochlorococcus_phage	1.6e-28	28.4

DBSCAN-SWA_15

167409 : 168423

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585838.1\|167409_168423_+	hypothetical protein	M1NSB9	Streptococcus_phage	1.4e-12	34.4

DBSCAN-SWA_16

179394 : 180615

Roseobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585846.1\|179394_180615_-	AAA family ATPase	A0A1B0UY03	Roseobacter_phage	2.9e-44	32.1

DBSCAN-SWA_17

191885 : 193526

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585855.1\|191885_193526_+	molecular chaperone GroEL	A0A219YK78	uncultured_virus	2.0e-104	41.6

DBSCAN-SWA_18

202727 : 203270

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082109393.1\|202727_203270_-	cytochrome c protein	A0A218MKF6	uncultured_virus	2.4e-22	43.6

DBSCAN-SWA_19

206407 : 207193

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045586014.1\|206407_207193_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.1e-23	32.0

DBSCAN-SWA_20

224261 : 226705

uncultured_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585876.1\|224261_225095_+	quinoprotein dehydrogenase-associated SoxYZ-like carrier	A0A218MKF3	uncultured_virus	7.1e-18	33.2
WP_045585877.1\|225113_225473_-	hypothetical protein	NA	NA	NA	NA
WP_045585878.1\|225619_226705_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	3.0e-16	28.7

DBSCAN-SWA_21

232885 : 237389

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585884.1\|232885_234388_-	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-10	28.9
WP_045585885.1\|234478_235525_-	autoinducer 2 ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_162492069.1\|235704_236382_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_082109410.1\|236621_237389_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.0e-14	26.4

DBSCAN-SWA_22

240664 : 241864

Corynebacterium_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045582226.1\|240664_241864_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.2e-93	46.5

DBSCAN-SWA_23

245914 : 247192

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585893.1\|245914_247192_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	5.8e-144	61.2

DBSCAN-SWA_24

269226 : 270009

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585577.1\|269226_270009_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.3e-31	39.8

DBSCAN-SWA_25

276624 : 277698

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585582.1\|276624_277698_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-27	33.8

DBSCAN-SWA_26

290613 : 297140

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585592.1\|290613_291381_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-30	37.8
WP_045585593.1\|291418_292144_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_045585921.1\|292303_292717_-	response regulator	NA	NA	NA	NA
WP_045585922.1\|292840_293560_-	response regulator transcription factor	NA	NA	NA	NA
WP_045585923.1\|293567_295037_-	PAS domain-containing sensor histidine kinase	A0A1V0SL97	Klosneuvirus	2.2e-38	36.3
WP_045585594.1\|295442_297140_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.8e-10	33.3

DBSCAN-SWA_27

305686 : 306424

Trichoplusia_ni_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585599.1\|305686_306424_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	5.5e-14	30.6

DBSCAN-SWA_28

315506 : 317678

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585603.1\|315506_317678_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	2.9e-34	26.9

DBSCAN-SWA_29

331676 : 333635

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052710432.1\|331676_333635_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	1.6e-15	30.4

DBSCAN-SWA_30

348751 : 349603

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585609.1\|348751_349603_+	alpha/beta hydrolase	A0A249XU20	Mycobacterium_phage	3.8e-06	23.3

DBSCAN-SWA_31

360613 : 363867

Trichoplusia_ni_ascovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585617.1\|360613_361381_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	7.5e-14	31.5
WP_082109401.1\|361567_362278_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_045585618.1\|362259_363867_-	acyl--CoA ligase	A0A1V0SBX8	Catovirus	2.4e-17	24.5

DBSCAN-SWA_32

375445 : 376952

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585628.1\|375445_376252_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.9e-13	25.4
WP_045585629.1\|376244_376952_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-12	25.9

DBSCAN-SWA_33

381505 : 383182

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585633.1\|381505_383182_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.4e-12	55.0

DBSCAN-SWA_34

402926 : 404573

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052710435.1\|402926_404573_-	PAS domain-containing sensor histidine kinase	A0A1V0SGX0	Hokovirus	9.5e-06	29.8

DBSCAN-SWA_35

407978 : 413012

Bordetella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052710469.1\|407978_408935_-	helix-turn-helix transcriptional regulator	A0A291LAM3	Bordetella_phage	7.9e-13	34.5
WP_045585649.1\|409188_409995_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_052710436.1\|410093_411098_-	alpha/beta hydrolase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	5.0e-26	29.2
WP_082109370.1\|411116_411794_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_045585650.1\|412001_413012_+	C-terminal binding protein	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	3.0e-18	29.5

DBSCAN-SWA_36

421727 : 424517

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585658.1\|421727_422246_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	9.5e-29	45.2
WP_045585659.1\|422242_422677_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.2e-53	74.3
WP_144428401.1\|422731_423763_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_045585661.1\|423755_424517_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	4.6e-88	70.3

DBSCAN-SWA_37

431463 : 433182

Ectocarpus_siliculosus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144428402.1\|431463_433182_+	PhnD/SsuA/transferrin family substrate-binding protein	Q8QKV7	Ectocarpus_siliculosus_virus	9.9e-06	28.7

DBSCAN-SWA_38

442179 : 445497

Stx2-converting_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585676.1\|442179_443208_+	MBL fold metallo-hydrolase	A0A1V0SGC6	Hokovirus	6.6e-05	37.3
WP_082109373.1\|443179_443509_+	hypothetical protein	NA	NA	NA	NA
WP_045580671.1\|443426_445070_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.1e-98	47.0
WP_045580672.1\|445149_445497_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.8e-31	54.2

DBSCAN-SWA_39

456228 : 461681

Trichoplusia_ni_ascovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585962.1\|456228_456975_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	3.3e-14	30.4
WP_045585680.1\|457562_461681_+	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	5.2e-61	29.9

DBSCAN-SWA_40

465055 : 476793

Bacillus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052710440.1\|465055_466504_+	histidine kinase	W8CYF6	Bacillus_phage	4.4e-15	26.4
WP_045585965.1\|466640_467339_+	pirin family protein	NA	NA	NA	NA
WP_045585966.1\|467466_468003_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	4.6e-26	39.5
WP_052710441.1\|468729_469053_+	STAS domain-containing protein	NA	NA	NA	NA
WP_045585684.1\|469057_469426_+	response regulator	W8CYM9	Bacillus_phage	7.5e-12	35.3
WP_045585685.1\|469422_471429_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_045585686.1\|471460_471913_+	hypothetical protein	NA	NA	NA	NA
WP_045585687.1\|471967_474202_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.4e-06	30.8
WP_045585688.1\|474298_474793_+	hypothetical protein	NA	NA	NA	NA
WP_045585689.1\|474789_475674_+	chemotaxis protein CheR	NA	NA	NA	NA
WP_045585690.1\|475677_476793_+	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	9.3e-05	30.7

DBSCAN-SWA_41

481979 : 485794

Bacillus_thuringiensis_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585968.1\|481979_482369_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	7.2e-05	26.5
WP_045585969.1\|482731_483370_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_045585695.1\|483516_484758_-	AMP-binding protein	NA	NA	NA	NA
WP_045585970.1\|484981_485794_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.8e-13	29.4

DBSCAN-SWA_42

489503 : 492286

Hepacivirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082109375.1\|489503_491471_-	long-chain fatty acid--CoA ligase	Q75ZG1	Hepacivirus	2.9e-17	25.4
WP_045585972.1\|491470_492286_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.8e-13	23.1

DBSCAN-SWA_43

496446 : 499413

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045585703.1\|496446_499413_-	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	3.0e-34	50.7

DBSCAN-SWA_44

504944 : 510287

Klosneuvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167543411.1\|504944_505850_-	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	3.5e-42	36.3
WP_045585974.1\|505846_507850_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA
WP_045585710.1\|507870_508668_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_045585711.1\|508679_510287_-	methylcrotonoyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	6.6e-20	68.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP012406

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012406_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012406_1

460663-460813

Orphan

Consensus_repeat	Method
CCGGCGTCACCAAAGTTCA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP012406_1

>merge|NZ_CP012406|1|460663-460813|PILER-CR
CCGGCGTCACCAAAGTTCATGAGTCCCGCCGAGTCGATGCTGCTGAGGGGCCGCTTGGGAGTGGCTGGGGAGCCGCTGGGGGCGTCACCAAAGTTCAAACCAGTGGCTCTGCCCTGCCCCTGCCGCCCCTTCCCGGCGTCACCAAGGTTCA

>NZ_CP012406|1|1|460663-460813|PILER-CR
CCGGCGTCACCAAAGTTCA	TGAGTCCCGCCGAGTCGATGCTGCTGAGGGGCCGCTTGGGAGTGGCTGGGGAGCCGCTG
GGGGCGTCACCAAAGTTCA	AACCAGTGGCTCTGCCCTGCCCCTGCCGCCCCTTC
CCGGCGTCACCAAGGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012406.1\|WP_045585184.1\|454041_454980_+\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240633
NZ_CP012406.1\|WP_045585185.1\|454992_456057_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380512
NZ_CP012406.1\|WP_045585190.1\|461522_462536_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP012406.1\|WP_045585189.1\|460944_461433_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP012406.1\|WP_045585181.1\|450991_451666_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP012406.1\|WP_045585182.1\|452379_453204_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270233
NZ_CP012406.1\|WP_045585193.1\|467706_468525_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NZ_CP012406.1\|WP_045585188.1\|459115_460045_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309782
NZ_CP012406.1\|WP_045585187.1\|456850_457306_-\|redox-sensitive-transcriptional-activator-SoxR	unknown	unknown	gnl\|CDD\|133385
NZ_CP012406.1\|WP_045585183.1\|453265_454009_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP012406.1\|WP_082109296.1\|457451_458654_+\|HPP-family-protein	unknown	unknown	gnl\|CDD\|225979
NZ_CP012406.1\|WP_082109311.1\|465923_467456_+\|malonyl-CoA-synthase	unknown	unknown	gnl\|CDD\|181011
NZ_CP012406.1\|WP_045585186.1\|456053_456791_+\|2-keto-4-pentenoate-hydratase	unknown	unknown	gnl\|CDD\|226480
NZ_CP012406.1\|WP_052710367.1\|462525_463461_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP012406.1\|WP_045585191.1\|463457_464879_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143456
NZ_CP012406.1\|WP_045585192.1\|464985_465891_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
NZ_CP012406.1\|WP_045585195.1\|470409_471132_+\|two-component-system-response-regulator-BtsR	unknown	unknown	gnl\|CDD\|236956
NZ_CP012406.1\|WP_045585194.1\|468671_470369_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP012406.1\|WP_045585334.1\|451682_452333_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP012406.1\|WP_082109313.1\|471152_471938_-\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|224707

Protein	Function_ID	Function_description	E-value
NZ_CP012406.1\|WP_045585184.1\|454041_454980_+\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240633	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase. Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.40357e-172
NZ_CP012406.1\|WP_045585185.1\|454992_456057_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380512	cd06289, PBP1_MalI-like, ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.30828e-125
NZ_CP012406.1\|WP_045585190.1\|461522_462536_+\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	5.38504e-64
NZ_CP012406.1\|WP_045585189.1\|460944_461433_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	3.8663e-15
NZ_CP012406.1\|WP_045585181.1\|450991_451666_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.22471e-75
NZ_CP012406.1\|WP_045585182.1\|452379_453204_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270233	cd01072, PBP2_SMa0082_like, The substrate-binding domain of putatuve amino acid transporter; the type 2 periplasmic binding protein fold. This group includes the periplamic-binding protein component of a putative amino acid ABC transporter from Sinorhizobium meliloti and its related proteins. The putative SMa0082-like domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.81049e-117
NZ_CP012406.1\|WP_045585193.1\|467706_468525_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	4.3073e-63
NZ_CP012406.1\|WP_045585188.1\|459115_460045_-\|hypothetical-protein	gnl\|CDD\|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	8.49179e-48
NZ_CP012406.1\|WP_045585187.1\|456850_457306_-\|redox-sensitive-transcriptional-activator-SoxR	gnl\|CDD\|133385	cd01110, HTH_SoxR, Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.	1.63913e-85
NZ_CP012406.1\|WP_045585183.1\|453265_454009_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.72557e-161
NZ_CP012406.1\|WP_082109296.1\|457451_458654_+\|HPP-family-protein	gnl\|CDD\|225979	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms].	1.05525e-121
NZ_CP012406.1\|WP_082109311.1\|465923_467456_+\|malonyl-CoA-synthase	gnl\|CDD\|181011	PRK07514, PRK07514, malonyl-CoA synthase; Validated.	0
NZ_CP012406.1\|WP_045585186.1\|456053_456791_+\|2-keto-4-pentenoate-hydratase	gnl\|CDD\|226480	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism].	4.25447e-33
NZ_CP012406.1\|WP_052710367.1\|462525_463461_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	3.47177e-35
NZ_CP012406.1\|WP_045585191.1\|463457_464879_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143456	cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.	0
NZ_CP012406.1\|WP_045585192.1\|464985_465891_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.2124e-104
NZ_CP012406.1\|WP_045585195.1\|470409_471132_+\|two-component-system-response-regulator-BtsR	gnl\|CDD\|236956	PRK11697, PRK11697, two-component system response regulator BtsR.	2.44132e-158
NZ_CP012406.1\|WP_045585194.1\|468671_470369_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NZ_CP012406.1\|WP_045585334.1\|451682_452333_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.72876e-82
NZ_CP012406.1\|WP_082109313.1\|471152_471938_-\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	1.30034e-117

>NZ_CP012406.1|WP_045585188.1|459115_460045_-|hypothetical-protein
MGSIHRLIETHGRDGALALVSDEERPLIDIAAAVQAAENSKLGITYAGFCQTALPHRQLPDDQHWERPGHKVKLVIQPGVIEDRNGVTRRIGVPYGSRARMILLYLQTRAIQTGNPEVELGGSMHDWLKRMDIPICGKAYRDVEDQAARLSACHLTFFTDADGGRRQSKESIVADAIQLRRPDDRQGTLFTDTVRLSDSFFKALREHPVPVAEEALKAISGKSMALDVYIWLAYRLHSLDKPTPITWAALHGQFGAGYALVRQFKTKFIPNLKYALAAYPDARVEESGEGLILHPSRPPINERVMARIA
>NZ_CP012406.1|WP_082109296.1|457451_458654_+|HPP-family-protein
MILGKLAALRRNTAERAKRWGESLFRPILPGATLRDRMIACCGALLGIAATGLLCRNMLTYMSSAPVLVAPMGASAVLLFAVPASPLAQPWSIVGGNTLSAVVGVLVASIIPDPMLAGAAAVALAIATMSLTRCLHPPGGAAALTAVLGGPAVTEMGIKFAFFPVAVNSVLLLTAGLMFHRLSGHRYPHKAVNTHRTGDPPPQLRPGITQGDVDDALRTLAETLDVSREDLGALLVNAELHALERLHADITCRDVMSRDVVTVTPDTHPQVARARLIEHGFRTLPVVDRENAVAGIVGHEQLSHGDLGRNTARVAAVMVPATVEGPDTPVFRLLGRLSDGHTHDVVIVDQNRRLLGVVTQTDLLVVLARAALALAVQDGGPGKDGGLPRAYLRDVSVGRA
>NZ_CP012406.1|WP_045585187.1|456850_457306_-|redox-sensitive-transcriptional-activator-SoxR
MLSPEEYDKELTVGEVARRSGVAVSTIHFYEAQGLIRSWRNPGNQRRFSRDVLRRVAVVKVAQRLGISLASIADALAALPEDRSPTTADWQRMSERWRAELDDRITKLAKLRDNLDGCIGCGCLSIRDCPLRNPWDELGDGGAGPRLLDPA
>NZ_CP012406.1|WP_045585186.1|456053_456791_+|2-keto-4-pentenoate-hydratase
MTDTVESLIAARETRQWLTGLTTPPADKAEAYAVQDAVARRLGPVTAWKVGAPAPDAEPFRAPINAATVFDGADRLPAKLFQVIGVEAEIAYRFDRDLPAREQPYTREEVLDAVASVHPAWEIVDTRFTGFGSQDGLSHMADQFNHGALVVGPAIADWRSLDPLKESVTLEVNGETKVETVGGNSAGDPVRLLVWMANVGARSFDGLHAGDVVTTGSCTGTVFVEPGSRSVARYGTMGTIELTVD
>NZ_CP012406.1|WP_045585185.1|454992_456057_+|LacI-family-transcriptional-regulator
MALRSDISSAGSGRITLTEVAEHAGVSRSTVSLVLRGSPLVAADTRERVQAAMAALGYIYNRGAATLRAARTQTVGLLVCELNNPFYAELTAGMDDVLDTEGYVAFIANTAEQPDRQDRFLQRMREHNVDGVILCPAAGTPPDLPDRLDRWRLPCVQALRFVSAEGHDYAGVDYGVGMETVIDHLVALGHRRIALVGGTLDHSAYAGRHAGFTAALRRHGLPEGPVLRCPLTRRAGADAAEALLDRPQPPTAALCYNDVVALGLMLGLEARGLRAGRDLAVTGFDDVPEAALSRPGLTTVATSARQIGQEAARLLLRRIADPQGPPERIILPSRLVVRESCGALTPSLHHRELS
>NZ_CP012406.1|WP_045585184.1|454041_454980_+|2-hydroxyacid-dehydrogenase
MKPEILLVDPMMPAIEQALDATYTVHRLSAAPDRDRLIAEVAPRVRAVVTGGGTGVKPAVVDALPNLGIVAINGVGTDAVDLEHARGRGVRVTNTPGVLTDDVADLAMGLVIAASRRMAAGDRFVRAGQWPKGKLSLARKVTGKRMGILGLGRIGEAIAKRAEAFGMGIAYTNRNPRSDVAYRFIASPEDLARESDILVVAASAGPASRNMVGRAMLDALGPDGILVNVARGSVVDEPELLAALTEGRLGGAGLDVFADEPNVPEGFFALDNVVLQPHQASATVETRTAMGQLVLDNLEAFFAGRPLPTAVV
>NZ_CP012406.1|WP_045585183.1|453265_454009_+|amino-acid-ABC-transporter-ATP-binding-protein
MSTDVVIRMEGVQKWYDQFQVLKDIDLEVRRGERIVICGPSGSGKSTLIRCINQLERHQKGRITVNGVELGPHHRQLDAVRREVGMVFQSFNLFPHLTVLENCMLAPLKVRGVGKDEAKATALKYLERVRIPEQADKYPGQLSGGQQQRVAIARSLCMNPKVMLFDEPTSALDPEMVKEVLDTMIGLAEDGMTMLCVTHEMGFAKSVAHRVIFMDRGEIVEQNTPEEFFTAPKSERTRSFLGQILSH
>NZ_CP012406.1|WP_045585182.1|452379_453204_+|transporter-substrate-binding-domain-containing-protein
MAFTATRRLIVAGALTTAAAIAAFGGLAATAHAQSVEDIKGKGKLTVGMLVDFPPFGITSADGKPDGYDADVAKLMAKHMGVPVEIVPVTGPNRIPYLLTGKVDVLVASLGITPERAKQVAFSDPYAAIEIGLLAPQKSPVAKAEDLSGKSAGVARASTQDQSLSAVAPKDARIMRFDDDASAVQALLSGQVDALGVSNVVAQQIKAMAPQANYEMKFVLKSQVQGVAMRQGQDKLLAWVNGFLDTVKKNGELNTIHQKWLGTDLPAAVTAGKS
>NZ_CP012406.1|WP_045585334.1|451682_452333_+|amino-acid-ABC-transporter-permease
MRVFGYNEFLFLLSAVQWTLLLSAIAFVGGGIVGLFVALGRTADVKPARWLATGYIQIFQGTPLLMQLFLVFFGATVLGIDMSPWVAAALGLTLNTSAFLGEIWRGCIQSVPKGQWEAASALGLRYPGLMRYVILPQAVKVAVPPTVGYLVQVIKGTSLAAIIGFVELTRAGQIVNNATFQPFLVFGVVAAMYFALCWPLSLLSARLEARYAAPSR
>NZ_CP012406.1|WP_045585181.1|450991_451666_+|amino-acid-ABC-transporter-permease
MTYDFQFDAVFASWDYLLDGAWLTVKLSLSAMVIGLAVAILCALGKTSGPKPVRWLINAYIEIIRNTPFLVQIFLIFFGLPTVGLRLSPDVAALIAMVVNVGAYATEIIRAGIESIHKGQVEAGLALGLRPLQVFRYIVLKPALRTVYPALTSQFILLMLSSSVVSAISADELTSVANNIQSQTFRSFEIYIVVTFIYLVLSMLFSALFAGIYRLAFAYTVDRR
>NZ_CP012406.1|WP_045585189.1|460944_461433_+|cation-transporter
MGVVAIAANLAITVTRFGAAPFTGSASMLSEAVHSLVDTGNEASMLAGLKRSKRLQDERHPFGYARELNFWTFRVALVIAATFLAYETKSLLIDESALPDLVRGVRALLLDEPAVDRVNEVLTIHLGPVAVIVTISPDVRDDATAGASEPAQDARCIGQAAR
>NZ_CP012406.1|WP_045585190.1|461522_462536_+|AAA-family-ATPase
MLSIVGDDMRQLRERRGENQTQFADWLNAQLGRSYTKARISRWESGAERIPQQLVDFLMRQRTDEKPRSATFLAIANQKGGVGKTATAVNLAYALTDGGARVLLIDCDSQSNATVHVGVGNAAIVALEQQRKTLYYVLRSEEPLTSVIMPTTESGLDLVPAGLSLADADVELAADSTGGLILREKLEEVRHAYDFVVMDCAPNLGLVTANALSAAELVVVPVQTEALALLGVKRLVDTIGRIRRRVNPGLRIAGIIPTMYNDRLTQDRATLQELHESYAGQVPVFPPIPRATVYGKAAAAGMITLAGDPKAPGAETFHEVARQIRDYAQRRETAHVA
>NZ_CP012406.1|WP_052710367.1|462525_463461_+|ParB/RepB/Spo0J-family-partition-protein
MSRKFERKTRELLGTAPAADGGMAGGLSGGLTVGSDRLFGTSAGFPHVVELDLDRVHRNPDQPRRHFDEAELRSLASSIERHGLQNPILVRPLPQGEYLLIGGERRVRAHEMLGRRTVFAILTSGDPDEIGLIDNVQRVDLNAVEYAMALGRLIDKHGYTHDELAAVVGRDRTDVTKLLAILTLPDEIRDEYAAGFAHVSRSVMIEIAAAPAELHAGLWQRAKEGASVKAVRQAKRDHAQGGPRETVADDGEEDTAPQEAARALRASVKRILRDVAVVREQRRHLDPDNREQLLRLRAEIDAILAGVDADV
>NZ_CP012406.1|WP_045585191.1|463457_464879_-|aldehyde-dehydrogenase-family-protein
MRIIDTIYIDGRFVTPHGTELFDLHNPATGAVTGQVRLADAEDARAAIAAAKRAFPAFSRTGRAERIAMLHRLRDAVAARRADLLDAVIDEYGAPVSRAGFMVDHPVSLFSDTAELLADYPFVRRMGTSHVSMEPLGIAGLITPWNSNAGFICGKLAAAIAAGCTAVIKPSEMSARQTQIVTEALHAADLPPGLFNIVTGRGDPVGAEIASHPDVAKISFTGSTATGKAILRAAADTLKRVTLELGGKSPTIILDDADLAQAIPLAVNAAFMNSGQACIAGTRLLAPRSRLAEIEALARTAVEAVRAGDPRDPATDVGPMVSRTQWERVQRYIRIGIEEGAELLAGGEGRPDGTTGWFVRPTLFSGVRNDMTIARDEIFGPVLSIIAYGDEEEAVAIANDTIYGLQAYVLSGDTARARRMAERIVAGRVLVNSLAHDPKAPFGGFKHSGIGREYGSFGLEAFLEPKAMLGADA
>NZ_CP012406.1|WP_045585192.1|464985_465891_+|LysR-family-transcriptional-regulator
METTGLSELEAVHAVARHRGFRAAAVELGVSRSALSHAVAALEARLGVRLFHRTTRSVAPTQAGERFVADTAPALRDIRAALDRLAGQRATPSGTLRINSSAGAARMIMQPVVLEFLRRYPEMTVDIVTEGRLVDIVLEGFDAGVRLAELVPQDMIAVPLGPELRFAVVGSPGYFADSFIPTTPADLARHRCIRSRMPGGSLYRWEFERHGEAVAIDGAGPLILDDSLLMLDAARAGIGLAYVTEWQVAEDLAAGRLVRVLEEWTPPFPGLCLYYSGRRHLPTGLRALVDLVREIGAKAGI
>NZ_CP012406.1|WP_082109311.1|465923_467456_+|malonyl-CoA-synthase
MTENFFDILAARFPADADAPFIELESGRSYSYRDLLDISGRYARLLAGLGVVKGDRVAVQVEKSAEAVFLYLACLRAGAAYLPLNTAYTRAEVGYFLGDAEPRVFVCAPATAAALAGTAASAGVGTMLTLGAGGDGSLADRAAGLDPDFDSVPCASDDLAAILYTSGTTGRSKGAMMSHRNLSSNAATLHEYWGFRPGDVLLHALPIFHTHGLFVATNCVLMNGGAMLFLAKFDADAVFRLLPRATVMMGVPTFYTRLLADARLTREAAAHMRLFVSGSAPLLADTHREFEARTGHAILERYGMTETGMITSNPLDGERIPGTVGFPLPGVSLRVADGETGGPVPDGEVGVLEVKGPNVFSGYWRMPEKTAQEFRPGGWFITGDVGRIDGRGYVHIIGRAKDLVITGGFNVYPKEVETVIDAIDGVVESAVIGVPHPDFGEAVAAVVRRPDAGAGGTVLDEAAVIRACKEQLANFKVPKLVVFVDELPRNAMGKVQKALLREAHKGAFGG
>NZ_CP012406.1|WP_045585193.1|467706_468525_+|polysaccharide-deacetylase-family-protein
MISLFRRAVLPLGLAASLLALPCPLLSASALAGQRSYAATHGAAPFETRHLIPGSDLALGDVDLRRPETHVVALTIDDGPDDNDARILDILREHGAKATFFYIGAKIPAHRDVARLVAASGNEVGSHTQTHPMTTDLPPAQREWNLAQAEAALASVGVRAAWFRPPYGDVDDALAALARHHGMATVLWTADSQDWKDTGTDIIRRRVTERLAPGAVVLMHSTKAASVAALPAILEEGGRRGYRFVTMSEWDAAMRQAVSPSLALLHHPAPRR
>NZ_CP012406.1|WP_045585194.1|468671_470369_+|sensor-histidine-kinase
MPVEPITLILSLLQQMCVYLVIAYLLSRTPLFLPLTHVTVRWPHKLACYVIFSIFCIMGTYFGLHIDDSIANTRAIGAVLGGIFGGPSVGLAVGLTGGMHRYSLGGMSALACAISTMAEGLIGGLVHRHMVRQGRIEPLFNPLRVGAVTFVAEVVQMLIILAVARPFEAAVHLVEVVAAPMIVANTLGAALFMRILLERRVLDEKQSSAFSAKALKIAARCDGVLRGGFNSANSTRVARIIYEETGVGAVAITDREKLLAFIGIGDDHHLPGTPISSRQTHQAIANNQVIYADGNEVAYRCSISPTCRLGAALVIPLVGEDGGVIGTIKLYEPKTKIFSTINRTLGEGVARLLSNQILAGRYEQQKALLAQSEIKLLHAQVNPHFLFNALNTISAVIRNDPERARQLVQNLSTFFRKNLKRPSETATLNDEIEHVSAYLQIELARFTGRLKVEIDVPDELRHARLPAFSLQPLVENAIKHGTAQLLGDGEVRIAARREGGDLLLSVEDNAGLYEAKPGGDGLGMTIVDRRIRNRYGEAFGVTVACDPDRSTRVTLRLPLEETVPA
>NZ_CP012406.1|WP_045585195.1|470409_471132_+|two-component-system-response-regulator-BtsR
MMTVLIVDDEPLAREELRRMLEESADIRIAGECANAIEAIGAINRQAPDVVFLDIQMPRVSGLEMLGMLDPERMPRIVFLTAHDEYAVQAFEEHAFDYLLKPADPARLEKTLQRLRRQQAPQQDVRVLPGAAELRHIPCTGVNRITLMKLADVEYVVSRPAGVYVVGEDGQERFTELTLHTLQEKSPLFRCHRQHLVNPDRIREIRFADGGLAEILTTGGHGVPVSRRFLGALKERLGMG
>NZ_CP012406.1|WP_082109313.1|471152_471938_-|aspartate/glutamate-racemase-family-protein
MKQWNGTPDTVSPGFKRSIQPRTGAQPVSQKVIGLIGGMSWESSAEYYRIVNEQVRDRLGGLRSARCMMWSFDFAEIEALQHAGRWDDATALMVDAARRLERGGADFLLICTNTMHRMAADVQAAVGIPLLHIADPTADRIRAAGLRRVGLLGTAFTMEQDFYKGRLADRHGLEVLIPEEADRATVHRIIYDELVQGRVEPASRQAYREVIARLVERGAEAVILGCTEIMLLVGAEDSAAPLFDTTAIHAEAAVELATAGM

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

188793 : 197850

Bacillus_virus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045584987.1\|188793_189774_+	ABC transporter substrate-binding protein	G3M9Z0	Bacillus_virus	5.6e-14	33.0
WP_045584988.1\|189792_190587_+	ABC transporter permease	G3M9Y4	Bacillus_virus	2.8e-27	32.6
WP_045584989.1\|190597_191377_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.4e-37	41.2
WP_045584990.1\|191403_194247_-	EAL domain-containing protein	G3MA91	Bacillus_virus	7.1e-25	36.5
WP_045585281.1\|194246_194753_-	hypothetical protein	NA	NA	NA	NA
WP_082109307.1\|194931_196698_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.4e-07	34.4
WP_045584993.1\|196911_197850_-	ribose-phosphate diphosphokinase	A0A0S1RV70	Klebsiella_phage	8.9e-09	24.0

DBSCAN-SWA_2

204285 : 226301

Pseudomonas_phage(23.08%)

capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082109268.1\|204285_210612_-	tape measure protein	B0VK47	Azospirillum_phage	1.6e-08	26.7
WP_045585000.1\|210666_211017_-	hypothetical protein	NA	NA	NA	NA
WP_045585001.1\|211070_211574_-	hypothetical protein	NA	NA	NA	NA
WP_045585002.1\|211597_212899_-	hypothetical protein	NA	NA	NA	NA
WP_045585003.1\|212905_213112_-	hypothetical protein	NA	NA	NA	NA
WP_045585004.1\|213108_213579_-	hypothetical protein	NA	NA	NA	NA
WP_052710335.1\|213575_214175_-	phage virion morphogenesis protein	J9SU29	Pseudomonas_phage	4.5e-14	32.6
WP_045585005.1\|214174_214600_-	DUF1320 domain-containing protein	A0A1B0T6F3	Thiobacimonas_phage	4.6e-21	41.1
WP_045585006.1\|214671_214914_-	hypothetical protein	NA	NA	NA	NA
WP_045585007.1\|214929_215823_-\|head	phage head protein	M4SRT6	Rhodobacter_phage	1.9e-93	54.5
WP_045585008.1\|215834_216248_-	hypothetical protein	A0A1B0T6E4	Thiobacimonas_phage	8.7e-25	51.8
WP_045585009.1\|216251_217445_-	hypothetical protein	A0A219VH76	Ochrobactrum_phage	7.1e-27	31.9
WP_063840388.1\|217797_219099_-\|capsid	minor capsid protein	A0A219VH74	Ochrobactrum_phage	1.9e-57	36.0
WP_045585010.1\|219101_220682_-	DUF935 domain-containing protein	M4SPR8	Rhodobacter_phage	2.4e-107	42.5
WP_063840389.1\|220690_222298_-	hypothetical protein	A4JWJ4	Burkholderia_virus	1.3e-127	50.9
WP_045585011.1\|222294_222846_-	DUF3486 family protein	J9SH37	Pseudomonas_phage	3.9e-12	37.2
WP_052710336.1\|222845_223172_-	hypothetical protein	J9SNG3	Pseudomonas_phage	4.9e-07	44.0
WP_045585012.1\|223183_223495_-	hypothetical protein	A0A0C4UR00	Shigella_phage	1.4e-11	45.6
WP_045585013.1\|223491_223917_-	DUF2730 family protein	NA	NA	NA	NA
WP_082109308.1\|223916_224039_-	hypothetical protein	NA	NA	NA	NA
WP_045585015.1\|224126_224615_-	hypothetical protein	NA	NA	NA	NA
WP_045585016.1\|224626_225163_-	hypothetical protein	NA	NA	NA	NA
WP_045585017.1\|225285_225852_-	hypothetical protein	NA	NA	NA	NA
WP_045585018.1\|225848_226301_-	regulatory protein GemA	Q6QIE7	Burkholderia_phage	1.1e-17	39.4

DBSCAN-SWA_3

339876 : 366570

uncultured_marine_virus(10.53%)

integrase,head,capsid,terminase,portal

attL 326188:326204|attR 368153:368169

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
326188:326204	attL	NA	NA	NA	NA
WP_052710352.1\|339876_340266_-	DUF3168 domain-containing protein	A0A0F7L5H8	uncultured_marine_virus	9.7e-10	39.8
WP_144428417.1\|340262_340766_-	hypothetical protein	NA	NA	NA	NA
WP_052710353.1\|340810_341137_-\|head	phage head closure protein	A0A0C5AE87	Paenibacillus_phage	2.4e-14	37.8
WP_045585104.1\|341133_341658_-	hypothetical protein	A0A0F7L6W0	uncultured_marine_virus	1.5e-10	32.6
WP_045585105.1\|341654_342230_-	hypothetical protein	I3UM02	Rhodobacter_phage	1.7e-18	37.0
WP_045585106.1\|342280_342739_-	hypothetical protein	NA	NA	NA	NA
WP_045585107.1\|342767_344111_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_052710354.1\|344195_345152_-	S49 family peptidase	A0A0A0RQ86	Citrobacter_phage	1.2e-32	36.0
WP_158511107.1\|345162_346431_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	5.7e-59	39.0
WP_082109283.1\|346436_348137_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	4.0e-124	47.2
WP_082109284.1\|348108_348669_-\|terminase	P27 family phage terminase small subunit	A0A0R6PI76	Moraxella_phage	2.9e-07	25.3
WP_063934296.1\|348758_349175_-	HNH endonuclease	A0A286N2R3	Klebsiella_phage	1.1e-14	45.6
WP_144428418.1\|349278_349842_-	hypothetical protein	NA	NA	NA	NA
WP_045585109.1\|350152_351799_-	hypothetical protein	R9TSC7	Rhizobium_phage	6.0e-77	32.5
WP_082109286.1\|351883_352594_-	hypothetical protein	M4SPS7	Rhodobacter_phage	6.0e-42	42.8
WP_144428419.1\|352590_352920_-	hypothetical protein	NA	NA	NA	NA
WP_045585111.1\|352919_353189_-	hypothetical protein	NA	NA	NA	NA
WP_052710357.1\|353181_354897_-	bifunctional DNA primase/polymerase	Q854C1	Mycobacterium_phage	4.0e-15	35.2
WP_045585112.1\|354893_355289_-	hypothetical protein	NA	NA	NA	NA
WP_045585113.1\|355285_355726_-	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	1.1e-25	51.1
WP_158511108.1\|355722_356190_-	DUF5131 family protein	A0A1B3B211	Gordonia_phage	3.6e-19	47.5
WP_052710359.1\|356229_356868_-	DUF5131 family protein	G8DH75	Emiliania_huxleyi_virus	4.0e-37	43.6
WP_045585114.1\|356872_357466_-	hypothetical protein	NA	NA	NA	NA
WP_045585115.1\|357469_357817_-	hypothetical protein	NA	NA	NA	NA
WP_045585116.1\|357819_358062_-	hypothetical protein	NA	NA	NA	NA
WP_045585117.1\|358058_358553_-	hypothetical protein	NA	NA	NA	NA
WP_045585118.1\|358724_358964_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_158511109.1\|358981_359410_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158511110.1\|359804_360749_-	WYL domain-containing protein	NA	NA	NA	NA
WP_158511111.1\|360845_361055_+	hypothetical protein	NA	NA	NA	NA
WP_144428420.1\|361069_361483_+	hypothetical protein	NA	NA	NA	NA
WP_045585121.1\|361932_362370_+	hypothetical protein	NA	NA	NA	NA
WP_045585122.1\|362456_362732_+	hypothetical protein	A0A1V0EEP7	Caulobacter_phage	6.2e-11	41.6
WP_158511112.1\|362737_362914_+	hypothetical protein	NA	NA	NA	NA
WP_045585123.1\|362914_363097_+	hypothetical protein	NA	NA	NA	NA
WP_045585124.1\|363086_364007_+	hypothetical protein	A0A0K0PWN4	Roseobacter_phage	3.6e-79	48.8
WP_045585125.1\|364003_365212_+	phosphoadenosine phosphosulfate reductase family protein	R9TRT5	Rhizobium_phage	3.3e-165	70.6
WP_045585126.1\|365216_365480_+	hypothetical protein	NA	NA	NA	NA
WP_052710360.1\|365496_366570_+\|integrase	tyrosine-type recombinase/integrase	A0A0U4JIT5	Pseudomonas_phage	2.5e-63	40.1
368153:368169	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_CP012404

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012404_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012404_1

481998-482211

Orphan

Consensus_repeat	Method
TGGCTGATGGTCCCGGTGTTGTGGCCGACCAGACCGCCGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP012404_1

>merge|NZ_CP012404|1|481998-482211|CRISPRCasFinder
TGGCTGATGGTCCCGGTGTTGTGGCCGACCAGACCGCCGATGTTGCTACCAGATCCCGTCACAGCCACCGTGGCATAGGACTGGCCGATGGTCCCGGTGTTGTGGCCGACCAGACCGCCGACTTTGCCGGCGGCCCCGGTCACGCTCCCGGTCACGCTCCCGGTGACGTGGGTTCGGGTGACGGTGCCGGCGTTGCTGCCGGCCAGAACGCCGA

>NZ_CP012404|1|1|481998-482211|CRISPRCasFinder
TGGCTGATGGTCCCGGTGTTGTGGCCGACCAGACCGCCGA	TGTTGCTACCAGATCCCGTCACAGCCACCGTGGCATAGGAC
TGGCCGATGGTCCCGGTGTTGTGGCCGACCAGACCGCCGA	CTTTGCCGGCGGCCCCGGTCACGCTCCCGGTCACGCTCCCGGTGACGTGGGTT
CGGGTGACGGTGCCGGCGTTGCTGCCGGCCAGAACGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012404.1\|WP_045583455.1\|470119_473062_-\|Tn3-family-transposase	unknown	unknown	gnl\|CDD\|376561
NZ_CP012404.1\|WP_045582226.1\|488522_489722_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP012404.1\|WP_045583456.1\|469749_470223_+\|DUF2254-domain-containing-protein	unknown	unknown	gnl\|CDD\|378351
NZ_CP012404.1\|WP_144428373.1\|488269_488464_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012404.1\|WP_045583930.1\|462693_464070_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP012404.1\|WP_045580661.1\|490161_491361_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP012404.1\|WP_045583925.1\|485411_487304_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP012404.1\|WP_045583924.1\|487866_488043_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_CP012404.1\|WP_045583461.1\|464071_464989_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183277
NZ_CP012404.1\|WP_045583463.1\|460727_462074_-\|beta-glucosidase	unknown	unknown	gnl\|CDD\|274539
NZ_CP012404.1\|WP_063840372.1\|487531_487792_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377943
NZ_CP012404.1\|WP_045583919.1\|497318_500465_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379882
NZ_CP012404.1\|WP_045583459.1\|465941_466628_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378924
NZ_CP012404.1\|WP_162492065.1\|495446_496775_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|379267
NZ_CP012404.1\|WP_045583460.1\|465189_465945_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP012404.1\|WP_045583462.1\|462075_462414_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012404.1\|WP_045584046.1\|484717_485407_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP012404.1\|WP_045583922.1\|491450_495176_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|223515
NZ_CP012404.1\|WP_045583929.1\|473227_473839_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP012404.1\|WP_052710150.1\|474241_476149_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387

Protein	Function_ID	Function_description	E-value
NZ_CP012404.1\|WP_045583455.1\|470119_473062_-\|Tn3-family-transposase	gnl\|CDD\|376561	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain. This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.	2.08722e-146
NZ_CP012404.1\|WP_045582226.1\|488522_489722_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.46507e-142
NZ_CP012404.1\|WP_045583456.1\|469749_470223_+\|DUF2254-domain-containing-protein	gnl\|CDD\|378351	pfam10011, DUF2254, Predicted membrane protein (DUF2254). Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.	3.55704e-31
NZ_CP012404.1\|WP_045583930.1\|462693_464070_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	0
NZ_CP012404.1\|WP_045580661.1\|490161_491361_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	9.97929e-143
NZ_CP012404.1\|WP_045583925.1\|485411_487304_+\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.04918e-31
NZ_CP012404.1\|WP_045583924.1\|487866_488043_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	3.05056e-06
NZ_CP012404.1\|WP_045583461.1\|464071_464989_-\|EamA-family-transporter	gnl\|CDD\|183277	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG.	4.95949e-22
NZ_CP012404.1\|WP_045583463.1\|460727_462074_-\|beta-glucosidase	gnl\|CDD\|274539	TIGR03356, BGL, beta-galactosidase.	0
NZ_CP012404.1\|WP_063840372.1\|487531_487792_+\|hypothetical-protein	gnl\|CDD\|377943	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein. Members of this family are similar to the protein product of ORF-3 found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumorigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process. Other proteins found in this family are annotated as being putative TnpR resolvases, but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor and in fact carries a LexA DNA binding domain (pfam01726), but no references were found to expand on this.	2.49505e-23
NZ_CP012404.1\|WP_045583919.1\|497318_500465_+\|hypothetical-protein	gnl\|CDD\|379882	pfam16841, CBM60, Ca-dependent carbohydrate-binding module xylan-binding. CBM60 is a family of xylan-binding modules found in conjunction with xylanase enzymes in many bacterial species that attack plant cell walls. Xylan is the major hemicellulose component of most plant cell walls, and is one of the most complex carbohydrates targeted by CBMs. CBM60 modules are evolutionarily related to CBM36 domains as both show circular permutation in the beta-barrel folds. CBM60 targets xylan but is also able to bind cellulose and galactan and thus contribute towards breakdown of the plant cell wall. Recognition of the ligand is conferred primarily through the polar interactions of O2 (oxygen) and O3 of a single sugar with a protein-bound calcium ion.	4.63978e-30
NZ_CP012404.1\|WP_045583459.1\|465941_466628_-\|alpha/beta-hydrolase	gnl\|CDD\|378924	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family contains alpha/beta hydrolase enzymes of diverse specificity.	3.59105e-16
NZ_CP012404.1\|WP_162492065.1\|495446_496775_+\|ISNCY-family-transposase	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	2.31384e-09
NZ_CP012404.1\|WP_045583460.1\|465189_465945_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.62901e-22
NZ_CP012404.1\|WP_045584046.1\|484717_485407_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.82097e-53
NZ_CP012404.1\|WP_045583922.1\|491450_495176_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|223515	COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane].	3.41147e-12
NZ_CP012404.1\|WP_045583929.1\|473227_473839_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	5.08658e-53
NZ_CP012404.1\|WP_052710150.1\|474241_476149_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	1.19228e-33

>NZ_CP012404.1|WP_052710150.1|474241_476149_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MIVSRSTATRPISRRAAAALARLAGPSRWLAAPATLLVLLQALSPDAAVAQAPVPVERNLPPAVAGAGGGLRTGGDPAADADDTPLGVDLKGIRLIGLTDPVMPDPPAGITSSGVEGLDRQRIVDALGPLLGQPLSRRRLAEAQAALAKAYRETGRPFVSITAPPQEITAGVLQLRVLPFRTGKVRVLEADGTAAGDGLAATIRAPVGGLIEAERISEDLDWLNRFPYRQLNGVFEPGSDPGSSDLTLEITRRRPWQAFAGVSNTGSLRSRSLDRVFIGFAAGIETLNDLTLSYQLTGSRDTVSAPGLLALSGNSRPSYASHAGRIIIPTFARQALSLTPSFVGTSQDSDDGLLTIRNTTVELPVLYRSAISNIDGNLAGWGDLYGGVTPKWLSRKVLSQGSRLASGSAGVFDLTAGWGGSWSQAGGGSTAIDLRAVVNRAGMVPGNSRAAWNSFSNGRVEDADYAYLYGVFSRTTPLTGVPWLGDVSWNTEITGQMVDKALPETEQLAIGGLYATRGYTLNDGSVDTGFVLRNEVRVPPFSALGHLGDTGIGPLEDAVSPFAFLDVGHGHNYNVGTLRSIGERADTTLVGLGAGVDYTLGQTLQAGMNVGMALTDGPETSRGTLTAQARILVSF
>NZ_CP012404.1|WP_045583929.1|473227_473839_+|recombinase-family-protein
MAAIGYARVSTREDRQVLDRQRDALQAIPCARIFEDRMSGFHAERPGLAACLDYLRPGDVLVVLDLDRLGRRARDLIGLIEDLEKKGIAFRALNTPMDTTSPAGRAFLQIQAAFAEMERNLIRQRVQEGLIAARARGRQGGRPRIMTVERLRYAQHLMADRTRSIPQICREMGGIPTSTLYHYLHADGTLKEPGCRLLESPMP
>NZ_CP012404.1|WP_045583455.1|470119_473062_-|Tn3-family-transposase
MPLVSDTAYPRLELNPPAMEVARFTPMPAEIAFVRRRARQDGARLALLVLLKSFQRLGYFVPFEDIPFVIVEHVADTFPGLTGAAAVLADYQTSTYRSRLTSLVREYAGVAAFGRLARTVAQAAAAEAARMRDDVADIINAVIEELVRRRFELPAFGTLAKIATAARAAANRDCHRHIANTLPTEARRRLNELLTLPPGQARTAWDRVKAEPKRPRPHHMRDFLHHLDWLRAQGAGTAVFASLPAAKVRSFAAEARTLTANVLAEMVEAKRLTLMAALLQSQIARTLDDLADMFVRQMQRTHARAKDALAAEHLQRFEHAETLIALLRDTVMACRSEGPPEQRLANVEALPLPDADGILERCAAHASTTEHGHLPFLARFARGQRRLFLRFLAAVPLASTSQDRSLEEAIAFVLKHHDQRQPTLRVAGIDLSFVPPSWWPLVAGQKARDPAPATVDRQIFELCVFTRAMIELKSGDLCIPGSDIHGDYRDQLVPWEICRRDMAAYTEQAGLPATPAAIVAALRDQLSATAKAVDASFPANEHVAIVNSKPVLKRLRAQPELAGAAALERRLKERLAPIDLIDALADTEHWLNWTRHFGPASGFDAKIDRPRERYLATAFCYGCKLGPSQAARAMKTLDRRQISFLNQRHVTEEAFDAAITTVIDAYAGFRLPQYHIRYGGYGGIGYYLVSDTYIALYSRFMACGAWEGNAILDIVSDNRSAIQPDTLHADTQGQSAPIFGLAYLLGIQLMPRIRNWQDLHFYRPDKDLHYPHIDSLFTATVDWTLIEAMLPDMLRVAVSIKAGRVRPSTILSRLSTYSRKNKLYFAFRELGRVVRTIFLLKFLSSLELRHLIQAATNKSELFNKYVQWVAFGESGLITEGVRDEQRKLIKYNHLVANLLIFHTLVSMTRSLDQLAAEGVAVEEEALAGLSPYQTEHINRFGNYTLDFTRVPAPLPADGQAAAPGSGPAQKQLPGVLSGHV
>NZ_CP012404.1|WP_045583456.1|469749_470223_+|DUF2254-domain-containing-protein
MNDRLRHYLEIVRTSLWLIPVLMGCAAFGLAIVLLSWGRGIINDASDYWLLYAGDTENARELLSALLTGMISMTALVVSITMVVLTLAAGQIGPRLIRTFIQDRVTQFVLGLILSHGNDSFHEFTHGRIALREAAFGPGPNPAPQPVRRRAGAPGRG
>NZ_CP012404.1|WP_045583459.1|465941_466628_-|alpha/beta-hydrolase
MGTNATVILVHGAFADGSSWSRVIPRLQAEGLAAVAVQNPLVSLDDDVTHVQRAIDRSKGPLVLVGHSWGGAVITQIGDQDRVTALVYVAAFAPDIGQSPNDTLKPFPPSAGLSGVSVDKGRFLTLTPEGMARNFAQDLPAEEAVLLAATQGPVAASCFATKVSAAAWKAKPSWYVVATKDRMLPPDFLRATASRIGARSVEVDSGHAPHLSRPEAVAAVIVEAARTA
>NZ_CP012404.1|WP_045583460.1|465189_465945_+|helix-turn-helix-transcriptional-regulator
MASPHRPTVSTRSYDGHERRHAHEHHQIVLPVAGGLDMEVGGACGRVGAGCGVLVADGAPHSFRSGGANRFVVLDLPAGGPLPEAAIRGTGAFFAIDDALDGLVRYLAAEAADRPLDPVLAHHAAGLLLRALEARHRETGLQAAAVPDDPIERALALMAERCEEAPTVSELAAAVGLAPSRFHELFRIRTGTTPARRLADLRLDRAEALLRAGILPLAEVALAVGFSDQSALTRSLRRQRGTTPGAIRNGG
>NZ_CP012404.1|WP_045583461.1|464071_464989_-|EamA-family-transporter
MTVSSPACPRRSVNRATAVGFTAILMWATLAPLATLASMVPPFQLVATSFLLAFLVGSGWTALRGDNPLRYFRQPPAAWALGVGGLFGFHFLYFMALQAAPPVEANLINYLWPLLIVLFSALLPGERLRAWHVGGALAGLAGTVLLIARGGSGGLSVDPAHLPGYAAALGSAVTWAGYSVLRRRLGQLGEAPTDAVSAFCLVTALLSLLCHLALERTVWPSTAGGWGAMLLLGLGPVGAAFFVWDHGVRHGDIRALGALSYLAPLLSTLLLVLFGLAPNQGIIWVACALIAGGSLLASKDLLRRK
>NZ_CP012404.1|WP_045583930.1|462693_464070_+|purine-permease
MTSATPATSGAESHPVDELLPPWRLLALGLQHVLVMYAGAIAVPLIVGGALKLPKDQIAMLINADLFACGVVTLIQAVGVWRFGIRLPIMMGVTFAAVGPMVAMAGNPSLGLLGIYGAVIGSGIFAMLAAPLVGRLLPLFPPVVTGSVIAIIGISLMRVGVGWAGGGVGNPRFGDPAFLGVAAFVLLAILALMKHGRGFVRNVAVLLGLVAGMLLAMALGMVSFAGLAEAPWVALVRPFQFGMPVFDPVAILTMSLVMIVVMIESTGMFLAVGDMVGRPVSREDLVRGLRTDGLGTLIGGVFNTFPYTSFSQNVGLVGVTGVRSRWVCAAGGLILLLLGLLPKLAHVVASVPAFVLGGAGLVMFGMVAATGVRILSQVDYTNRRENLIVVAVSIGVGLIPLVSDKFFSQMPAFLSPLLHSGILLGTLTAVALNWYFNGLQGGERARRDVAASAHGAEA
>NZ_CP012404.1|WP_045583462.1|462075_462414_-|hypothetical-protein
MSKSIEGVSNWMHMFRWIVKLIRDEYGVDEALLTRNATLETDIQLSIDQVEQVLEYISESFGVRFPEGTLDELVKLEELCLLASWIKGYYKRPEFISDAFEARCRSINQIAA
>NZ_CP012404.1|WP_045583463.1|460727_462074_-|beta-glucosidase
MTVPSSPYPPGFTWGVSTSAYQIEGAAAEDGRGPSIWDVRCRTLGGVVNGDSGDVACDHYHRMPEDVALMRGLGVDAYRFSVSWPRVMPRGKGAVNQPGLDFYDRLIDRLLEAGIEPWLCLYHWDLPQALQDLGGWAGRDCAGWYADYAALCARRYGDRVKRWITFNEFSVFTLFGYAIPWAAPGIVDRPQHLRAIHHVNLAHGAGVDVLRDLVPGASIGAIHNRQVVIPETDTPENRAAAALLDEHWNLVFCDPQILGYYPPQTAAAIEPYVQAGDMARIARPVDWFGLNHYGPIFAKADPSRAWGYGWGDAPPDSPTHGVGWAIFPDAFRDELLTIQHRYRLPIVVTENGCGGSDSVGPDGAVLDPHRIAYLTIYNAAMREAMARGADVRGYFVWSLLDNFEWGSGYGQRFGIVHVDFQTLARTPKDSARWYADLIRAAKSDVPAA
>NZ_CP012404.1|WP_045584046.1|484717_485407_+|response-regulator-transcription-factor
MSSRPDDRPLSGSHQLTVVLVEDDPPTRDHLAETLTACDGIALLATADTLEVARAACERFLPTVLITDLQLPDGHGTDLIREVRDRYPATEIMVISVLGDEDSVVTAIRAGASGYILKDSEPVDMVEAVHGLIEGRSPISASIARYIIRRVQDGSFKDRKPAPLLTPRETDILWGIAKGFTYNDIADRLGLSRQTVPSYIKNIYRKLEVNSRSEAVYEAIGRKLIRLGE
>NZ_CP012404.1|WP_045583925.1|485411_487304_+|histidine-kinase
MATHLVAAPEGRGWLRLLRRPFIGLFYLTVLAVGIGTPLFTLSPPEGGIEFDRAMFRPLEAIDRPADVTEAAVSLPHSFRVPGGGRFGGGLYRLEFDHSPNGPEQWSVLIPNYSGRILVRVNGALLYDSDWTHSGRIVTLIWPDIIAIPAPVLKAGTNTVEISAVMLFGRKSYLSAIHAGPDSLLRPVYQQHHFLLVMLPQLLFGWQFAFSVMLLIVWAVRRSEWSYILYAGILFFNSISNLVVIVPEPLVSPQVMQLSNLTFSWVTAMLVPFAFSFVNRRPPRASVLFAAFPVGVTTAFLLLPPEIFHVLNWYVAMPVAWGLTCWAIGVLSYAALRRGNNSAHMVLGATLLSLLMIFHEAPILYGSVGKRLFINPFSIPIFMLLSIISTVLMWRFAAALNAVDQFNANLRREIADAEAALRISLAREQAQERAIALEAERSRLTRDLHDGIAGQLVSMVALSRRTDAGVRDFGIAARKALVDLRLVIASMAEVGDDPGMMLANFRDHIQPQLRTLGIALDWQMHALPEGAGWSSSTALELFRLLQEATMNAARHSGADRVTIEIRPTDDGVRVMVADEGRGGASDRPGGYGLANMRRRALAIGARLAIVSGPDGTRIILDLPRPTARGR
>NZ_CP012404.1|WP_063840372.1|487531_487792_+|hypothetical-protein
MARPPHRKWNPDPELPILQLKVRLLDVSPMVWRRLLIPAVMTLRELHGVLQVAMGWEGVHLYVFELRARRYGSPNLCTGNPEPPDY
>NZ_CP012404.1|WP_045583924.1|487866_488043_-|CsbD-family-protein
MDKDRAEGAMDKAKGSVKKGVGEVTGDEKMKAEGTADKAKGKAENAIGGAKDALRGDS
>NZ_CP012404.1|WP_144428373.1|488269_488464_-|hypothetical-protein
MTAPLWITGPPTPAIGGRYGGPVPHSSYTTPWGTTHAILRGIVDAAMKDDRQACRFAGHRGRGG
>NZ_CP012404.1|WP_045582226.1|488522_489722_+|IS256-family-transposase
MTDEMMALRAMLEKGADADVLREMIGFAAERLMELEVQGLTGAGHGERSAERLVQRNGYRDRDWETRAGTVELRIPKLRKGSYFPGFLEPRRMAEKALTAVIQEAYIQGISTRSVDDLVQAMGMSGISKSQVSRLCAEIDERVKTFLGRPIEGDWPYLWLDATYVKVRQNGRIVSVAVTIAVAVNTDGRREVLGMDIGPSEAETFWIEFLRKLKRRGLSGVKLVISDAHGGIKAAVTRVFQATWQRCRVHFSRTALTHAGKSGRRVVAAFIATAFAQDDAASARTQWRQVADQVRAKLPKLATLMDEAEEDVLAYMTFPREHRAKLHSTNPIERLNGEIKRRTEVVGIFPNEEAITRLIGAILLEQNDEWAVQRARYMTLETIAPLGDDPIVSLPAVAA
>NZ_CP012404.1|WP_045580661.1|490161_491361_-|IS256-family-transposase
MTDEMMALRAMLEKGADADVLREMIGFAAERLMELEVQGLTGAGHGERSAERLVQRNGYRDRDWETRAGTVELRIPKLRKGSYFPGFLEPRRMAEKALTAVIQEAYIQGISTRSVDDLVQAMGMSGISKSQVSRLCAEIDERVKTFLGRPIEGDWPYLWLDATYVKVRQNGRIVSVAVTIAVAVNTDGRREVLGMDIGPSEAETFWIEFLRKLKRRGLSGVKLVISDAHGGIKAAVTRVFQATWQRCRVHFSRTALAHAGKSGRRVVAAFIATAFAQDDAASARTQWRQVADQVRAKLPKLATLMDEAEEDVLAYMTFPREHRAKLHSTNPIERLNGEIKRRTEVVGIFPNEEAITRLIGAILLEQNDEWAVQRARYMTLETIAPLGDDPIVSLPAVAA
>NZ_CP012404.1|WP_045583922.1|491450_495176_-|tetratricopeptide-repeat-protein
MTGFSIVFIATAWGPRHGGINAFNADLCRALAKRLDGSREVVCVVKAPLEPSESDDAKRHKVRLIATSGENLDSGDVVCALRDHGIVGVGWWVGHDVVTGHIALSARETMDMGQVALIHHMAYGQYAGHKHGRGATGVSRHGEQRALFAQADRCFAVGPKLRDNADEMLTDEGRPASVMLIPGLAEGIQDRDPAKTSFRAMVFGRMDAEDDRIKQGSLAVAAMAEACRESAAQAGVAPILQKSRPEIQIVGIEEPGSQTERDLVALAEEFAAGHRLQVTARPFLENREALFRDLSSASVALMPSWHEGFGLTGWEAVAAGVPLILSQDSGLHQLLREEAPGVGPGGVSGIPVAGHTPTGPDDPNQHPFLPGDVRQVKDAILSIAADPGEYRKHARELRSLLRNKGMSWEGTANGLLTGLGLNDLPPGGATDRPPPRTPAPPAPVTPAPSPSWLADPRQTLPEERLVLDSLLLRPEYRIVPFQDMLASVADDVLAWAQDEGRARLSVALRLYTADGGSGKTRLMVEVCGRLLDRAGPGWTAAFVPDSRHTPSVIADIEALVKTAPRVFLVVDNAESRRSDVEAIIKAALCAPAGHRVRLVLLGRGNGEWWSRLCEDTTDAVARGFLRSPEAAEGPLSLPAPDTGDRTARQRLYREAQDAFRARLSPHRSLPDTPTPMPDLSAPHFRHTLLLHLAALMALLGRNLETGSDLLTVALDREQDYWRSSLSSSGLDHALLPGMKQALALLTLTGGTTTARDAREILLLVPALRDAGDAERRQVFDHLRTLYPREGGIDALRPDLLGERLVERVLADEDELLDCVFDTADRPTWITSALTVLTRIGQRGSSRLLQRALFPSRLSIPLVDRAIEVAVDIGDPLGPALAEAVRQADKKLQQKIINHVWPKRPKRSVALAPFIKEITHLMAAKTKENGWESVRSFVKFICNASDISAAYYSVSEFNLAQEWPEVAFSAIEGTKKAYQSAADSVLPYLYTSHASALAAQGKMREALKAGQRAEALWRDLAAQRPDAHRADWAGSLNNLGNRLADEGRYTEALEATRHAEEIWREMAARRPDAHRADWATSLNNLGTCLANEGRYAEALEAARHAEEIWRDLAAQRPDAHRANWASSLSNLGACLADEGCHAEALKAARHSEEIRRELAAQRPDAHRADWAGSLDNLGIRLADEGSYAEALEAARHAEEIRRELAVQRPDAHRAGWARRSCPTGWCRSCGEPARRSALRWLA
>NZ_CP012404.1|WP_162492065.1|495446_496775_+|ISNCY-family-transposase
MSERELQRVEVLGEIVNGQRSVASASSCLGLSERQVWRLLARYKSGGGGALAHRGRGRPSNRRLDSELRERALELVRTHYRDFGPTLAAEMLADRHGLTVSRETLRQWMAETGLWLSRRQRRQFHPPRLRRERLGELVQIDGSEHRWFEERGDPCTLLVFIDDATGRLMQLRFVASESAFSYFAALEGYLAAHGRPLAFYSDKHSVFRVSQSEAKGGQGMTQFGRALAELTIEILCANSSQAKGRVERVNRTLQDRLVKELRLAGITGIEAGNAFLPGFIERFNARFAVPPARPDDGHRPLTVTPDRLREILCWREQRHVGQQLTLSYERKRIMLDVTDLTEGLVGQYVDTYAFADGRLELRWKGAALSYQAFDKDQRVLHADIVENKRLSAVLAQVKEIQDSQSPPRVKSNSEKLGYRKTGAGKRGRKSFVDKHIEAKAVE
>NZ_CP012404.1|WP_045583919.1|497318_500465_+|hypothetical-protein
MATTNTDGTIQVTFAVNAWGAVAGGKWPHFQLLVDGKVIGDATVASATQSRYVFTANVPADKAHALQLVYDNDDTVNGVDRNLFVKSFEVNGKTILAIDPSVKYDTGKIDGQAVIAGQTEMYWPGALNVALPATLFSSTPVDTGTDTDTMTTTIKVKAYGVSAAGQAPHFKLVIDDQVVGDAWVSATSPTDYTFTAKVDPNEAHKIQIWYDNDATVNGVDRNLYVKSINIDGQTIASTSDMASYDKGPVDGKYVVAGQEGLFWGGALTFGVPEEYFGGAYVPPPPPPPTKGVDIVVNAYGTSAGGQAAHFKLLVDGQVIGDAKASATTSAYSFKADIDPTKAHTVQVVYDNDSTVNGVDRNLFVKSVSINGHTVAATDSIVTYDKGAVDGKDVVKGQEGLYWGGALNIKAGADLFGDTPVPQNPDPTAPTKPAFYVAANGKDSWSGKLAAPNADGTDGPFASLEKAQAAMRAGSIDTTYIREGTYHLTKTLELTSADNGHSFLNYPGETPVLSGGEVVKSFTSEGNGLYSAKLGSASNLDLIVGDVRQHLAEKYAYDAADVTSGWRFADAASGGPSGWYIRSHGSEVTAADIQPGTLIQVMDAERLGDTLTSISSFNASTRTIMLKNGASLPFAEGTTYKLLNNASYVDQAGEFAWRASDGKLLYKAASSGFASTGVEVPRLDTLIKLNGASNITIDGLTFKNTTTGGDALLLTKSSGNHISDNSFLNVGTAIKLTAASSNNDIAHNTLNHLAENGIEMDGRSNGNSIYANSISNIGEVRKAVSGIFGTGVDNNVISNNDIDHSARYGISFKDYGGTTNTVNHNNVIQYNNISYTGLETADGGAIEILGRSSANTDMIIQGNRIEHASGLATSNADGWVYGQKGFGIYLDDMAGGITVKDNFIKDADWASVQIHGGDNNVVTNNFAVIASNKEDFIRIEWQPVHGTPGDPHNNTITKNVVMGTLPLDDYIELLSANDFVIDYNLVYNVPKYGDHDVIGKPMFTNAYWGDYSLQASSPAFAMGIHDLAWAKMGVEGTAAAGLEHFWDGV

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

453707 : 491361

Corynebacterium_phage(25.0%)

bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045583467.1\|453707_454988_+\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA
WP_045583466.1\|454999_457210_+\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	1.6e-24	26.3
WP_045583465.1\|457214_460151_+\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	F2Y2R6	Organic_Lake_phycodnavirus	6.0e-19	30.5
WP_045583464.1\|460170_460713_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_045583463.1\|460727_462074_-	beta-glucosidase	A0A0B5JD41	Pandoravirus	1.6e-64	34.7
WP_045583462.1\|462075_462414_-	hypothetical protein	NA	NA	NA	NA
WP_045583930.1\|462693_464070_+	purine permease	Q9KX94	Enterobacteria_phage	1.2e-25	28.4
WP_045583461.1\|464071_464989_-	EamA family transporter	NA	NA	NA	NA
WP_045583460.1\|465189_465945_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_045583459.1\|465941_466628_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_045583456.1\|469749_470223_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_045583455.1\|470119_473062_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	4.0e-55	25.0
WP_045583929.1\|473227_473839_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.5e-36	48.6
WP_052710150.1\|474241_476149_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_082405208.1\|476170_484429_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_045584046.1\|484717_485407_+	response regulator transcription factor	NA	NA	NA	NA
WP_045583925.1\|485411_487304_+	histidine kinase	NA	NA	NA	NA
WP_063840372.1\|487531_487792_+	hypothetical protein	NA	NA	NA	NA
WP_045583924.1\|487866_488043_-	CsbD family protein	NA	NA	NA	NA
WP_144428373.1\|488269_488464_-	hypothetical protein	NA	NA	NA	NA
WP_045582226.1\|488522_489722_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.2e-93	46.5
WP_045580661.1\|490161_491361_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.5e-93	46.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_CP012402

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012402_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012402_1

1129747-1129995

Orphan

Consensus_repeat	Method
GCCCGCCTCGCCCTGGAGAAGGTCGTTGCCGGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP012402_1

>merge|NZ_CP012402|1|1129747-1129995|CRISPRCasFinder
GCCGGCGCCACCCTGAATGGTGTCGTTGCCCGCCTCGCCCTGGAGAAGGTCGTTGCCGGCCCCGCCATGGACGACATCGTCCCCGTTGCCGCCTTGAATGCTGTCGTCGCCCGCCTCGCCATGGAGAAGGTCGTTGCCGGCACCGCCATTGAGCGTATCGTTGCCATCGCCACCGGACAGCTCGTCGGTACCGTCACCACCCGACAGGGCGTCGTTGCCGGTGCCGCCATCGAGCATGTCGTTGCCGGC

>NZ_CP012402|1|1|1129747-1129995|CRISPRCasFinder
GCCGGCGCCACCCTGAATGGTGTCGTTGCCCGC	CTCGCCCTGGAGAAGGTCGTTGCCGGCCCCGCCATGGACGACATCGTCCCCGTTGCCGCCTTGAATGCTGTCGTC
GCCCGCCTCGCCATGGAGAAGGTCGTTGCCGGC	ACCGCCATTGAGCGTATCGTTGCCATCGCCACCGGACAGCTCGTCGGTACCGTCACCACCCGACAGGGCGTCGTT
GCCGGTGCCGCCATCGAGCATGTCGTTGCCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012402.1\|WP_045582825.1\|1124995_1126039_+\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225721
NZ_CP012402.1\|WP_144428284.1\|1153843_1154362_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP012402.1\|WP_082109069.1\|1126153_1126819_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP012402.1\|WP_052710075.1\|1147325_1148840_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP012402.1\|WP_045582820.1\|1151421_1153851_-\|xanthine-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|376913
NZ_CP012402.1\|WP_045582829.1\|1120135_1121074_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP012402.1\|WP_045582821.1\|1148775_1150941_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|273831
NZ_CP012402.1\|WP_045582823.1\|1127104_1127302_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012402.1\|WP_045582819.1\|1154358_1155228_-\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP012402.1\|WP_045582826.1\|1124250_1124904_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238497
NZ_CP012402.1\|WP_045582831.1\|1117593_1118223_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238497
NZ_CP012402.1\|WP_158511080.1\|1160102_1160870_-\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|226236
NZ_CP012402.1\|WP_158511079.1\|1157704_1158259_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP012402.1\|WP_082109068.1\|1155290_1156793_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP012402.1\|WP_045582828.1\|1121172_1122006_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP012402.1\|WP_045582827.1\|1123072_1124239_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236898
NZ_CP012402.1\|WP_045582830.1\|1118568_1120131_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173853
NZ_CP012402.1\|WP_052710073.1\|1158778_1160008_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP012402.1\|WP_082109070.1\|1122152_1123076_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP012402.1\|WP_045582818.1\|1156826_1157492_-\|carbon-monoxide-dehydrogenase-subunit-G	unknown	unknown	gnl\|CDD\|176853

Protein	Function_ID	Function_description	E-value
NZ_CP012402.1\|WP_045582825.1\|1124995_1126039_+\|AbrB-family-transcriptional-regulator	gnl\|CDD\|225721	COG3180, AbrB, Putative ammonia monooxygenase [General function prediction only].	7.94614e-67
NZ_CP012402.1\|WP_144428284.1\|1153843_1154362_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.68458e-60
NZ_CP012402.1\|WP_082109069.1\|1126153_1126819_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.35027e-36
NZ_CP012402.1\|WP_052710075.1\|1147325_1148840_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.83846e-111
NZ_CP012402.1\|WP_045582829.1\|1120135_1121074_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.74415e-112
NZ_CP012402.1\|WP_045582821.1\|1148775_1150941_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|273831	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP012402.1\|WP_045582820.1\|1151421_1153851_-\|xanthine-dehydrogenase-family-protein	gnl\|CDD\|376913	pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde dehydrogenase.	0
NZ_CP012402.1\|WP_045582819.1\|1154358_1155228_-\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.89021e-68
NZ_CP012402.1\|WP_045582826.1\|1124250_1124904_+\|isochorismatase-family-protein	gnl\|CDD\|238497	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.	5.63091e-70
NZ_CP012402.1\|WP_045582831.1\|1117593_1118223_-\|isochorismatase-family-protein	gnl\|CDD\|238497	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.	9.85141e-61
NZ_CP012402.1\|WP_158511080.1\|1160102_1160870_-\|MipA/OmpV-family-protein	gnl\|CDD\|226236	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane].	1.54886e-47
NZ_CP012402.1\|WP_158511079.1\|1157704_1158259_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.29568e-06
NZ_CP012402.1\|WP_082109068.1\|1155290_1156793_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP012402.1\|WP_045582828.1\|1121172_1122006_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.05445e-92
NZ_CP012402.1\|WP_045582827.1\|1123072_1124239_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	1.30814e-127
NZ_CP012402.1\|WP_045582830.1\|1118568_1120131_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	4.56583e-137
NZ_CP012402.1\|WP_052710073.1\|1158778_1160008_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.15844e-74
NZ_CP012402.1\|WP_082109070.1\|1122152_1123076_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.84623e-151
NZ_CP012402.1\|WP_045582818.1\|1156826_1157492_-\|carbon-monoxide-dehydrogenase-subunit-G	gnl\|CDD\|176853	cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	2.02865e-54

>NZ_CP012402.1|WP_045582823.1|1127104_1127302_+|hypothetical-protein
MARQRGRQDIPAVAGPASPRRTGHPSKPPAVESPQLERIERERPPTNMTGRIRPVLRSELAKLAH
>NZ_CP012402.1|WP_082109069.1|1126153_1126819_+|GntR-family-transcriptional-regulator
MIALRNQVLEGKLPPGTKLRETELAARFGVSRTPVREALVAAEREGLVTYETNRGYTVRQFTLRDLLESYEMRGLLEGHGCRIVAERGLPTDVERTLKAGLERAEALVGGEGPLEGDALDQWRQLNQRFHNGLMGLVPNGLFSRMFQLVYRVPKIDDVLEMERDCATLRTYNDEHRRILDAIVRRQGSRVEFLVREHLQGPSDLISRRMEEMDTGSLRSAG
>NZ_CP012402.1|WP_045582825.1|1124995_1126039_+|AbrB-family-transcriptional-regulator
MSTLPIPLQWSLLAVATLLFTALFSAVALPGAVLLGPMVAAVILGVRGTTIELPRRSLWLAQALTGGVVARSLDASIIQDVALHWFPMLMALASMMAGAVLVGWLLERSGRLPVGTALWGTMPGAAPAMIAMAGDFGGDPRFVAVMQYLRVIVVVVLASLACHFLLGAPAGLPVAPAVPIPVATTASSLALVAVALLGGWLGTVLRLPAGPLLGPILLGGALNMSGSVTLDAPGWLIAIAFAIIGWTTGLRFRRDLLRDLLASVPVMLLSTFGLVALSVGSAWMLSALTGKDPLTAYLATSPGGLDSVTVVALGSAADVPFILTLQTLRLFGTILLSVLLVRVLRRG
>NZ_CP012402.1|WP_045582826.1|1124250_1124904_+|isochorismatase-family-protein
MFSVTEDLKDNYSGVFQNRIGFGRKAAVLSIDFIDFYTKPGAPFFGQGVVDAVEASVPLYAAARRAGLPVIYTKVVYDKAGSEGGMFVKKIPALRAFTADNPLAGFDARVTPEPEDIVLVKHHSSAFFGTPLSTMLRVLECDTVIVTGCSTSGCVRATAVDGVSHGFRVIVPAECVGDRHPAPHEAALFDMNAKYGDVLPVAEVMAHVEAQPAAVPA
>NZ_CP012402.1|WP_045582827.1|1123072_1124239_+|ATP-binding-cassette-domain-containing-protein
MNQSRVASEAGPPPALELVETSRVFTRRGGLFRKAGTPVRAVDGVSLAIHPGETLGLVGESGSGKSTLGRLALRLVEPSSGRLLVDGRDVTEVPKAEMQAMRRDIQMVFQDPYGSLDPRVTIGRSIAEPLKVHGLWDPKDGPQKVAGVMSLVGLDPSHADRYPHQFSGGQRQRIGIARALTLDPKILVLDEPVSALDVSIQAQIINLLQRIQRERRLSYLFIAHDLAVVRHVSHRIAVMYLGKLVELASRDTLYRRPLHPYTVSLLSAVPIADLRMRKRRRAPVTMGEIGSATSVPTGCRFHPRCYRARLVASGGGVPTERSGDALLPRACLMEEPALRACGAKTDTGGADQVACHFPETPESRSEVATAVLQDIGYPPIRPLPLQSA
>NZ_CP012402.1|WP_082109070.1|1122152_1123076_+|ABC-transporter-ATP-binding-protein
MSLAVRAGGTLAVVGESGSGKSMTFLSALGLVASPGRVRRGEVRIGDAEILGRTPEQLRRLRGAVVSMIFQDPLTALNPVFTIGEQIVEVLRAHSGLGRAAARARAVELLARVQIPDPSRRIDDYPHQFSGGQRQRVLIAMAIALSPKVLIADEPTTALDVTVQAQILDLLADLQAETGMALVLITHDLGLVARYADDVAVMYAGRLVEVGSIEEVFSAPRHPYTRALFRSIPRLDGPVDEDLPAIDGQPPNVARLPPGCAFEPRCTLGRGRTDCCTKRPLPLAGDRAGHRSACFHADRLDQMEAAR
>NZ_CP012402.1|WP_045582828.1|1121172_1122006_+|ABC-transporter-permease
MRYLRHPGFLIGGILLSAMLVVAVAAPWIAPWSPLDTDLGNTLAAPSAQHLLGTDQYGRDVLSRLIWGTRISLQVAVAVMVLSLTLGMAIGAVAGFFGGWVERVTVSVIDILLAFPGFLLALALVAARGSSLESVIVAVSLAYTPRVAAVMRAVVLTIKPRPYVEASRAIGMGNMRLLFLHVVPNSLPPVIVVATIGAATAILAEAGLSFLGLGVQPPAPTWGNVIADGQSFLASNPVISLSAGLCIALMVVALNLLGDGLRDTLDPQMRRTSGKML
>NZ_CP012402.1|WP_045582829.1|1120135_1121074_+|ABC-transporter-permease
MDRLVRQLTQLAITVFGIVTVTFFLVRMIPGDPAQYMLGDYATEEALATLRVQLGLDRPVIVQYGLYALRALTGDFGASVVTGRPALEEILYSLPDSALLAFAGLAIAVVIGIPLGIVTAERQGSWSDLLIMVVALFGISFPVFWLGLASVLLFSQELKWFPALGASSGGGLIDQIHHLVLPAGVLGVSVAAYITRLTRSAMLEVLNQDYVRVARAMGVPQRRIVWRLALKNALVPILAIVGVTFAWSLGSAILIEVVFSRPGIGSMILKAVSARDYQLVQAGVLVLAVAVVLVNSLLDLAYGLVDPRLSAR
>NZ_CP012402.1|WP_045582830.1|1118568_1120131_+|ABC-transporter-substrate-binding-protein
MVGTHRQERNGVTRRQFGSLLAVGALVAGSGWPLGADAAPPVLRVRIGSDIGNLDPARIFQIENQTVATQIYNGLVKYDEATNALVPDLATSWEISDDGTVYSFALRSGVFWHKNYGPFTSDDVKFSFERVLDPQTGSSYSSQLASIKSVETPTPDRVVITLKEPNSGFLHKVSAFNQGWILSRKALGEIGEKAYALNPVGTGPFVFQVWTPGREVKLSANKEYFAGAPKVEELLFRVIKDETAAAIALENGEIDIFFGLQQPEVIQRLKGAGQVTVHDRDANHTINLILNTGIKPLGDLRVRQAISHAINRKALIDGFFKGTKTEASGFLTSSFQEFTDAVPAYPYDPQKAKALLKEAGVGPFTLDLVAPGANPYDKIVVPIASDLAAIGIDAKIKVLERGAYLQARNKGSVPTCITGVVGAPDPDSPILSMFAKSSFPPGLNTSHYEGIEDLIAAARQAKDDAARKEVYGKIQAKVMGDAPIVPLYADRLYIAHTKAVTGFVQNSLFTMSAYPVVLAG
>NZ_CP012402.1|WP_045582831.1|1117593_1118223_-|isochorismatase-family-protein
MSDLSIYDRQEFGKPLGFGRKTALLVIDFQLGFTREDAFGGFNINDAIASTAELLVHARAAGLPIAHACFIAPDAVGGIGPFGEKIPNLLKLAADAPDTAFAPAVTPLKGEYIVRKQHASAFFGTSLSSWLRANGVDTLLVTGCTTSGCVRASVIDASAHGLRPIIVEECVGDRAEEPHRANLFDMRQKYADVMSLEAVIGQIGLAKAA
>NZ_CP012402.1|WP_052710075.1|1147325_1148840_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MRRCGGCSRAAGRRRPIMASPETAGGAVAAPGEPPAPGAPPPVTPRLRPRRGHELEFLPAALEAMETPPSPLARAVSLLIVAFVVIAVAWAWIGHIDITAVTRGRIISADRNKLVQTLEPGIVRAIRVADGQRVDQGTVLLELDPTDSAADAGRAEWELAVAETEAARLRAALAGRRSFDPAPGADAALVALQRSILTNQLAARDAALDAIGSQERQRRAEMAALAAEKARLHATLPLIREQVQAKRNLSQRGYSPRFDLLELEKELAEVEYGEIAATNREAEAAAALKGLADERRRIMAEFDGKAMADLADAEKRAAALRQELTKAERRRERQLLTAPVGGVIQQLAVHTVGGVVTAAEPLMVIVPANRTLVAEVQIDNKDIGFLHPGMPVEIKIDAFPFTRYGLLPGSVAAVSHDAILPPDGAAARTGAGDAATTAAADRDGPKFSARISLDRTTIRGETGEDIALAPGMAVTAEVKTGRRRILDYLLSPVLSHVHEAMRER
>NZ_CP012402.1|WP_045582821.1|1148775_1150941_-|type-I-secretion-system-permease/ATPase
MPRLVEDSVTPDTGLSCLTFMLRFMGHGADPEQLRHDQAVRGRAMGTLEILRAAKRLGLKARSVTTRWDRLAAIPLPAIAKRRDGRYFIIAKIDGDRVLIQDPLDPRPLMLPRAVVEPAWSGELVLMARRAGLDLAQVRFGIGWFVPALLKYRRLFTEILLASFMLQVFGLISPLFFQVVVDKVLAHRSLTTLDILVIGLVVVSLFETVLGGLRSYLFSHTTSRVDVTLGARLFEHLLALPLPYFQARRVGDNVARVRELDRIRDFLTGSALTLVIDLVFTVVFLAVMWWYSPALTGIVLASLPAYAAISLVVTPVLRRRLEAKFALGAENQAFLVESISGIETLKAMAVEPEMRRHWEERLAAFVGAAFRASSLGVVAGQAVQLVSKLTMAALLYVGAQEVIDGVLTIGALVAVNMLAGRVSSPVLRMAQLWNDFQQARVSVERLADILNTTPEPAAKPGRLPLPAIRGRIRFDRVGFRYRPDASPTLQAIDLTVEAGETIGIVGSSGSGKSTLTKLVQRLFVPESGRVLIDDVDLSLVDVAWLRRQIGVVLQENVLFNRSIRDNIALADPGMPMERIVEAARLAGADRFILGLPEGYDTVIGERGASLSGGQRQRVAIARALITDPRILIFDEATSALDLESEAAIQANMRLICDNRTVLIVAHRLSTVRGCDRIVAVEEGRIAEQGTHDELIRLGGRYAALWRMQSGRGQAEADHGIA
>NZ_CP012402.1|WP_045582820.1|1151421_1153851_-|xanthine-dehydrogenase-family-protein
MNRIAPGFPSALRSSPLRPFVGQGVPRPNARRLLEGRGTYVDDVELPRMVHVAYLRSPHAHARIGRIDALAALDMPGVVAIVDGRQLSEICTPFVGTLSHFAGMQSASQHALAIDRACWQGEAVVAVVAETRARAEDAMQRIQVDWEVLPAVTRMDTALAAGTPVIHPELGSNLCFHRDIDTGGVDDAFAAADLVVEETYEFGRHTGVTMEPRSVLADFNPAERRLTVHHSHQAPHMMGDLYSRLMGIPEADVRVVCKDVGGSFGIKVHAYADDFATVALSILLGRPVKFVADRLESFVTDIHAREHRVKARLALTRDGRFLAFDIADLTGIGPYSVFPRTSAVEGNQVVNLCGGPYDHSQYRASLDVVFQNKVQTSQYRGVGHPIACAVTEGIIDLAATRLGVDPLELRRRNVMADDSFPRKGASGIVLENLSHQRCLDRLEEMVDFAALRREQAELRAKGVHRGIGIAVLIELTNPGAAFYGTGGARIASQDGATVRLDPTGIVHCASGVGEQGQGTETIFAQIVADGVGVPMDRVRVLTGDTAATPYGGGTWASRGAGIGGEAVLQASRQLRANILDFAAVYLALPVDGLDIVGGTVIDKDGACLIELAELGRLAHFRPDLLPRGFQPELVVTRHCSQRDYPFIFTNGIQVSHVEVDVETGVVTLLKHWVVEDCGRVINPLLVDEQIRGAVVQGLGGVLYEECLYDGNGLLRNGSMADYLVPMAGEMPDIEVAHVETPTRSSELGAKGAGEAGTAGAPAAVMNAINDALQPFSVRLTSHPITPEKILNAVLGEAQFRKPGEGPEHS
>NZ_CP012402.1|WP_144428284.1|1153843_1154362_-|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MTDKVLVNMTVNGMVYERWVEPRLHLGDFLREELGLKGTHLGCEHGVCGACTVVLDGDIVRSCLTLAVQADGAMVDTIEGKSESGAIRDLQDAFLERNALQCGFCTPGLLLTADALLDADPGASRADIRHHISGNYCRCTGYHAVVDAIEAVGRLRQSGCQTGPQCQGDRHE
>NZ_CP012402.1|WP_045582819.1|1154358_1155228_-|xanthine-dehydrogenase-family-protein-subunit-M
MKAPPFAYKRVDSVAAASALLREHGDEARLMAGGQTLLATLGMRLSEPSLLIDIRGIAGMQGISVDGGHLRIGALARHVDVERSPLVARHLPLLSMAAPHIAHAAIRNRGTFGGSIAFADPAAEWPACTVAADGELVLGDGRTERTVKAADFFLGLYQTALRPDELVTAIRFPLPDPARRFGFTELARRRGDYATVGLALAGNRVDGRLDDLRIVYFGVGGMPVRARSAEAALAGSGGDADAVRRAVGSLGDDLSPSGDLYADAATKLHLAGVLLRREIHGLTSEGGRR
>NZ_CP012402.1|WP_082109068.1|1155290_1156793_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MTIHDAVPHWIGGGEHRGSGDRRGKVFNPATGEVLRTVGFADATDVDAAVAAARNALPGWRATPPLRRSRILQNYLTLLRRNERELAAVASQEHGKTFDDALGSVRRGIEVLEFACGIPHLLKGEHAADVGTGVNAYSLRQPVGVCVGITPFNFPVMVPMWMFPMAIACGNSFVLKPSEKVPSCSVMLARLFAEAGLPDGVLNVVQGDKAAVDALLADPDVAAVSFVGSTPIARGIYETCARNGKRVQALGGAKNHAVVMPDADLDFTTEALIGAAFGSAGERCMAISVAVAVGDVADRLVERLADRARALKTGPGNEPGVDMGPLVTGEHRDRVRGYVDAGEREGAALVVDGRDIEVAGAGNGFYLGPTLFDHVEPSMTIHREEIFGPVLSVVRVPTLEAAIALINASPFANGTAIFTGSGAAAQLFEETVEVGMVGINVPIPVPMAFFSFGGWKNSLFGDLHVHGTESVKFYTRTKAVTSRWRFGKAAASTLVMPTLG
>NZ_CP012402.1|WP_045582818.1|1156826_1157492_-|carbon-monoxide-dehydrogenase-subunit-G
MELTGEQRIAAPRWRVWESLNDPQILKHCIPGCEDVIRHSDTEFEARVLTKVGPLRARFSGRVEMREIEAPAGCTLWFEGGAGPVGMARGQSRVTLEEAPDGTLLRYAAEAAVGGKLSQIGGRLIDASARKMADDFFRAFNDRVTRSAGDAAEAPVESPAEPSAEQSGSVLAGPGAPRKPTASAAATSAAMAGGWSGEGQRFLWLATGTVLGGIIGYLLHL
>NZ_CP012402.1|WP_158511079.1|1157704_1158259_-|TetR-family-transcriptional-regulator
MGGQMRELATQIGVSHPLVFHYFPSKKALIERVYTEVYLGRWKPEWEHWVKDRSEPFEARLTRVYSDYARTILTKEWVRILIHSALADGYINDNYLTLVGERLLRPIIGEARIELGLDDDREPTEAENELIWGLHGGIFYIGVRHWIYGHKFPENLPQVVADRVRAFVLAAREIFPREAGKAAG
>NZ_CP012402.1|WP_052710073.1|1158778_1160008_+|MFS-transporter
MTFLAYLYDSLDLQILAICMPVIITSLNISLTDAGLLSSATMIGTALGGILFGWIAENFGRKNAAVISLVEFGVFTLAVYWCNSWEELMVLRFLQGIGMGGLWGPIVALIADHWAPRYRARAAGFMLSTFALGGILASVMGRFLLSEVGWRMLFALTGTAILVGLLFWLVVPADEKHVAKQEKPRISLSQLFQPGIAKLTIGATIAAACQMGGFWGVSAWIPTYLVNVRGLSIEYMSVFSIVIFAGAFVGYFLFAALADRIGRRNALMLAFLADSIIVPLYVLIPDGIFLFWISPIMGLSFGGVFGLFGSYFAELFPLHIRAMGSGFAFNIGRGIGAVVTPVTIGAMAKSHGLGFGIGACSVVFFTGVIVLFFMPETLSAKSSPNSSPHPVPGDKAAARGGTQASAAEA
>NZ_CP012402.1|WP_158511080.1|1160102_1160870_-|MipA/OmpV-family-protein
MTVAVQMAAGSAAAQGRPPAEWSFMLGGGALYVPDYEGSNDYKVLPVPIVELSWRDRVRVTTRGGPGIYASPVMTDSLKVELGVRYDFGRDQDDNDALKGLGDIEGGAVAVARLGYEVGPVDLGLEVARDLGGDRDGLMARAEAEYAIRLLDGRARFSVTPYVTWADDNYMGSSFGITAAQAARSARRYARYDAEGGFKDAGIAVGIGYTITDSIHAMGRVGYQRLLGDAADSPLVKREGSPDQFSGLLGVSYRW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage