CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011853	Gordonia phthalatica strain QH-11 chromosome, complete genome	3 crisprs	cas3,csa3,RT,DinG,DEDDh,WYL	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011853_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011853_1

1869200-1869300

Orphan

Consensus_repeat	Method
AAGCCCGCAGCCGCGTCGGGCCCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011853_1

>merge|NZ_CP011853|1|1869200-1869300|CRISPRCasFinder
AAGCCCGCAGCCGCGTCGGGCCCGAAGCCGGGCGCCAAGCCTGGTCCGAAGCCCGCACCCAAGGCTCCGGCTCCCAAGCCCGCAGCCGCGTCCGGCCCGAA

>NZ_CP011853|1|1|1869200-1869300|CRISPRCasFinder
AAGCCCGCAGCCGCGTCGGGCCCGAA	GCCGGGCGCCAAGCCTGGTCCGAAGCCCGCACCCAAGGCTCCGGCTCCC
AAGCCCGCAGCCGCGTCCGGCCCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011853.1\|WP_062395171.1\|1862209_1863043_-\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|380141
NZ_CP011853.1\|WP_062392548.1\|1861683_1862145_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011853.1\|WP_062395173.1\|1863984_1865715_+\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP011853.1\|WP_062392560.1\|1877354_1878335_-\|phosphotriesterase	unknown	unknown	gnl\|CDD\|224649
NZ_CP011853.1\|WP_062395177.1\|1878464_1879442_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224327
NZ_CP011853.1\|WP_062392547.1\|1860461_1861682_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
NZ_CP011853.1\|WP_120298829.1\|1866141_1866642_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	unknown
NZ_CP011853.1\|WP_062392554.1\|1871674_1872139_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP011853.1\|WP_062392556.1\|1873117_1874392_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NZ_CP011853.1\|WP_062392552.1\|1867381_1868425_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP011853.1\|WP_120298708.1\|1868440_1868746_+\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP011853.1\|WP_193392976.1\|1875819_1877355_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341286
NZ_CP011853.1\|WP_062392550.1\|1865719_1866145_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|373114
NZ_CP011853.1\|WP_062392561.1\|1879438_1880113_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225524
NZ_CP011853.1\|WP_062392559.1\|1875464_1875827_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|379266
NZ_CP011853.1\|WP_062395174.1\|1866775_1867342_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP011853.1\|WP_062392557.1\|1874401_1874734_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
NZ_CP011853.1\|WP_062392549.1\|1863183_1863924_-\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NZ_CP011853.1\|WP_062392555.1\|1872135_1873104_+\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
NZ_CP011853.1\|WP_082399514.1\|1874841_1875435_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NZ_CP011853.1\|WP_062395171.1\|1862209_1863043_-\|DUF559-domain-containing-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	1.29865e-07
NZ_CP011853.1\|WP_062392547.1\|1860461_1861682_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	2.68955e-97
NZ_CP011853.1\|WP_062395173.1\|1863984_1865715_+\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP011853.1\|WP_062395177.1\|1878464_1879442_+\|metallophosphoesterase	gnl\|CDD\|224327	COG1409, Icc, Predicted phosphohydrolases [General function prediction only].	1.97881e-24
NZ_CP011853.1\|WP_062392560.1\|1877354_1878335_-\|phosphotriesterase	gnl\|CDD\|224649	COG1735, Php, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	7.73881e-107
NZ_CP011853.1\|WP_062392554.1\|1871674_1872139_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	6.57834e-43
NZ_CP011853.1\|WP_062392556.1\|1873117_1874392_+\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	3.87673e-97
NZ_CP011853.1\|WP_062392552.1\|1867381_1868425_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	0
NZ_CP011853.1\|WP_120298708.1\|1868440_1868746_+\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	1.64085e-20
NZ_CP011853.1\|WP_193392976.1\|1875819_1877355_-\|AMP-binding-protein	gnl\|CDD\|341286	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13. This family contains fatty acyl-CoA synthetases, including Mycobacterium tuberculosis acid-induced operon MymA encoding the fatty acyl-CoA synthetase FadD13 which is essential for virulence and intracellular growth of the pathogen. The fatty acyl-CoA synthetase activates lipids before entering into the metabolic pathways and is also involved in transmembrane lipid transport. However, unlike soluble fatty acyl-CoA synthetases, but like the mammalian integral-membrane very-long-chain acyl-CoA synthetases, FadD13 accepts lipid substrates up to the maximum length of C26, and this is facilitated by an extensive hydrophobic tunnel from the active site to a positively charged patch. Also included is feruloyl-CoA synthetase (Fcs) in Rhodococcus strains where it is involved in biotechnological vanillin production from eugenol and ferulic acid via a non-beta-oxidative pathway.	8.47252e-126
NZ_CP011853.1\|WP_062392550.1\|1865719_1866145_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|373114	pfam14530, DUF4439, Domain of unknown function (DUF4439). This domain has a ferritin-like fold.	7.41935e-25
NZ_CP011853.1\|WP_062392561.1\|1879438_1880113_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	3.92146e-70
NZ_CP011853.1\|WP_062392559.1\|1875464_1875827_+\|DoxX-family-protein	gnl\|CDD\|379266	pfam13564, DoxX_2, DoxX-like family. This family of uncharacterized proteins are related to DoxX pfam07681.	0.00150616
NZ_CP011853.1\|WP_062395174.1\|1866775_1867342_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	2.57173e-39
NZ_CP011853.1\|WP_062392557.1\|1874401_1874734_-\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	7.00278e-18
NZ_CP011853.1\|WP_062392549.1\|1863183_1863924_-\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	4.10183e-71
NZ_CP011853.1\|WP_062392555.1\|1872135_1873104_+\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	2.84842e-56
NZ_CP011853.1\|WP_082399514.1\|1874841_1875435_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.23988e-08

>NZ_CP011853.1|WP_120298708.1|1868440_1868746_+|YlxR-family-protein
MSAPPVRTCIGCRQRDSASAMIKIVAVRGADDTTQVVVDERGRLPGRGAWLHRDERCLSLAVRRRAFGPALRDRGVAVSPEDLAEAIGVITHEDPARGQDR
>NZ_CP011853.1|WP_062392552.1|1867381_1868425_+|transcription-termination/antitermination-protein-NusA
MHIDISALRLIEADKGVPANTVLEAIETALLTAYRHTDGFAPHARIDIDRKSGEVRVMGQELDEDRNVVHEWDDTPEGFGRIAATTARQVILQRLRDAENEKTYGELVAHEGEVVGGVVQADAKANARGMVVVQIGSDSNATEGVIPSAEQVPGESYKHGDRIKCYVVGVARGPRGPQITLSRTHPNLVRKLFSLEVPEIEDGSVEIVAVAREAGHRSKIAVHTGVSGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYATDPAVFVGNALSPAKVLSVTVIDEETKAARVIVPDYQLSLAIGKEGQNARLAARLTNWRIDIRSDAGDGGPRDTDGGTDEPADTLN
>NZ_CP011853.1|WP_062395174.1|1866775_1867342_+|ribosome-maturation-factor-RimP
MTGEALTANISELVAPVLDRLGYDLEDVAVLTPPGRRDIRIVIDRDGGASLDDLADVSRELDPVLEGANLLGETPYDLEVTTPGIGRPLTLPRHWRRNQGRKAKVEYRVDGVEKSVEVRIGASDDTQVTLVTVDKSRITSVDVAFADIVRGVVEVDFSRPGEAALRACGLSDEEIARRREPATHTTTE
>NZ_CP011853.1|WP_120298829.1|1866141_1866642_-|twin-arginine-translocation-signal-domain-containing-protein
MPSRRRDPSPDSSISRRTVLRGSAVVGVAVAAGWSLSACETGPSQRQRDAEALLPHAQAAFRDQAAAQQLAPRSTEYAKALRTVSDQRGEHLKALRDEINRLHSSIADQIESPATTPTASVEALGKQIESSATAAGKTAVGSSGYVAGLLGSVSASCQTLAKVQLA
>NZ_CP011853.1|WP_062392550.1|1865719_1866145_-|ferritin-like-domain-containing-protein
MTQTTALNDAADAENTAVFTYGVITAFTERDVRTTVAENIAAHRVRRDQLNEKLLAAGESERTPAAGYTLPVDVTDQDTAAKAATAAERDCETAYRALLEQADDSSVRRIALDGLTDCALRASYWRGVAGVTPLTVAFPGQ
>NZ_CP011853.1|WP_062395173.1|1863984_1865715_+|proline--tRNA-ligase
MSNLFLRTLRDDPADAEVPSHKLLVRAGYIRRAAPGVYEWLPLGLKVFRAVENLVREEMDAMGAQEILLPALLPREPYETTGRWTEYGDALFRVKDRKGSDMMLGPTHEEIFTQLVKSEYSSYKDLPVTLYQVQTKYRDEERPRAGLLRGREFVMKDSYSFDIDDAGLQASYDAHRATYQRIFDRLGVKYVIVAATSGAMGGSASEEFLAECEVGEDTFVRSTESGYAANVEAVVTPVPDAIPLDGLPDAVVHETGDTPTIDSLVDWANGALDGEYTAADTLKNVMVKIRKPGGEWQITAVAVPGDREVDFKRLEASVEPSEVELLVDADFEANPELVKGYIGPKAVQAAGFTYLADPRVVSGTRWITGADQPGKHYVDLVCGRDFTPDGVIEAAEVRAGDPSPDGKGVLEAAKGIEIGHIFQLGRKYTDAFAFDVLGENGKPVRVTMGSYGLGVSRMVAVLAEQMHDDKGLRWPREVAPFNVHLVIANKDEAAVAGAQQLAADLDAAGLSVLFDDRKASPGVKFKDAELLGMPVVVVVGRGWADGTIEIRDRFTGETVQAPVDGAVDAVIAAARG
>NZ_CP011853.1|WP_062392549.1|1863183_1863924_-|peroxide-stress-protein-YaaA
MLVILPPSETKSDGGKAAPLQLDSLTLPELTPIRRKLADAIVELSADLDASREALGLGASAVAEVERNADLWESPTRTAITRYTGVLYDALDYPGMTRATKAKAADRLLIGSALFGVVAATDLIPAYRLSGGSKLPGFGTLGSLWKPALSPALDALDDFVVDLRSGVYQKLGPVHGAVTATVVTEFPDGSRKVVSHFNKHYKGLMARELVRTRRNVRDINALAAVLSDAGQRVEITSPLEITVVTD
>NZ_CP011853.1|WP_062395171.1|1862209_1863043_-|DUF559-domain-containing-protein
MDTGVIRWGALRERASRAEIDRAVADGDIIKLRRDWYAMPTAHPDVVQAVAAGGVLSCASALALYGIWVPPMDKVHIRGNDATARLHPHWCRQRGRQPAERGAVDDLETALRHAAKCLPEEDFVVVCDSILNKGLVAPSTLEYWFGSAPRSITDRLQRCDGRAESGTETMARLRLQSHNLRVRTQVQIPEVGRVDMVIGESLIVEVDGYTYHADPETFENDRLRDLHAKALGYNVIRLTFKQVVYQWNVVEPLILEIVRRREHLKPLPQLARTATTF
>NZ_CP011853.1|WP_062392548.1|1861683_1862145_+|hypothetical-protein
MNARIAAGVSGAFLLAAAICAWWVHPAISAVLVSVSVIVMSVWQIYRRRRGIAPMPPSIVTTYVVPLTFGALAVIALNGWNYRIASHAGSDGGEFQMLIGLLTGVVGMSAAYGYGRLRAQKAQVDEVVEVTIADDRRTRGDVDDEQWFFPQAK
>NZ_CP011853.1|WP_062392547.1|1860461_1861682_+|uroporphyrinogen-III-C-methyltransferase
MVHPHYLAGLDLRGRRVVVVGGGSVAQRRLPNLIAAGADVHVIAVDPTPTVESEVAVTVERRAYVDGDLAGAWYAMACTDDPEVNAAVVAEAERSQIFCVRADDGKQGTAVTPASGTHRDLQFGVLASGDHRRSGAVRAAITEALADGTSLKVDEGRRHAAGVALVGGGPGDSDLITVRGRKLLAEADVVVADRLAPVGLLDELGPQVEIIDAAKVPYGRAMRQERINELLVERARAGKFVVRLKGGDPYVYGRGFEELQACVEAGVPVTVVPGISSPIAGPELAGIPVTHRGVTHEVVIVSGHVGPDHPDSLTNWPALAQMRGTIVIMMAVKRIDEFASALLAGGRAGDTPVAFIENASRADQRLLRTDLAHAGQTAREENLIAPAIAVVGPVAGFTDADRVLGF
>NZ_CP011853.1|WP_062392554.1|1871674_1872139_+|30S-ribosome-binding-factor-RbfA
MADPARAARLAKRITTIVASAIGGEIKDPRLAHVTITDCRVTGDLHDATVFYTVMGASVDSEPDVAEAAAGLAAATGALRTKVGAGTGVRFTPTLRFELDTVPDATRAMDELLARARAQDEMVARAARDAKPAGDSDPYRHDDEDPDESEESAG
>NZ_CP011853.1|WP_062392555.1|1872135_1873104_+|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MNPASSESVAAALSAADSISIISHVRPDPDTLGSALGLGLALAGLGKRVHCSFSGPETLPGPLQQLPGVHLLVEAGRLPAADVVVSVDAATAGRLGELEPLFRSATKSICIDHHVSNLGFADLDLIDAEADCTASVVLRVLDELGAPLTADIATCLYAGLVTDTGSFKWARPTSFSVAARLLEAGVDGGHWSRVLLDSHPYSWLQMVSKVLARSVLDTDAAQGRGLVYGVVDAEMMTEINWDESESVIDVVRTAREAEVAAVFKEVAPGKWAVSLRSKTDVDVMPVARAFGGGGHKRAAGYSDSGTARDVVDRLVAELRTTG
>NZ_CP011853.1|WP_062392556.1|1873117_1874392_+|MATE-family-efflux-transporter
MLRLAASALVVLIAPPLYLILDLAVVGRLGATELAALTVATLVLATISTQLTFLSYGTTARSARAFGAGERERAVDEGVQASWIAVGVGTLIVAVGYALAPWITRALVPDATVAADAADWLRIAVFGVPLILLSMAGNGWMRGVQDVRRPVYFVAGGFAVSAVLCIGLVHGVGGFPRLGLEGSAWANLVGQSLTGIAFVWRLVQESGRRLRPDWPVIRAQLSMARDLILRSLSFQICFISAAAVAARFGVAQVAAHQVVLQLWDFTSLLLDSVAIAAQQLVGAALGAKAFDAARKLSAKVTGTSVAMAAVLSVILLLGISWLPRIFTDDPAILDAMRTPWWFYIVMLPIAAVVFALDGVLLGSGDAAFLRTATLAGALGAFLPLIWLSLIFDWGLAGIWTGLLAFMCVRLFAVVWRVRSGAWVK
>NZ_CP011853.1|WP_062392557.1|1874401_1874734_-|N-acetyltransferase
MTTPVPVPPPTVTLSPAPDLRHFPDRDRYELWSGDELIGVEGYEHRPDGSVVLLHTVVTEKYGRAGFARLLVSSVLDELHDAGIEFVPVCTYVQKFLDRFPQYRAGVAQD
>NZ_CP011853.1|WP_082399514.1|1874841_1875435_+|TetR/AcrR-family-transcriptional-regulator
MFNEQVQSTRVEQRERTRMSVIAAAQTLFRREGFRGTTIRGIAAEAGVSVGTVMGVGDKDALLLACYDRWIGQVHAAGDGNRAHDDGLAVPQRIGEVIAPFVSLFGGDLELAREYGSILARGTHRTEVFTSLAVALNDAFIGVYRDAGLGERAAAAGRATYLAYLGLLMSTSATGSDMSGFREQLEDVAAALMGADS
>NZ_CP011853.1|WP_062392559.1|1875464_1875827_+|DoxX-family-protein
MFDVPSPVWPTVVLIVILFGDALMSAVPVQFIRDCMDGVRFPVDDWGWALVYVKLVAVAGLLVGIWQPGVGVAATAGVIAYFVAAAIAHLRARFLNSTFWVNCLGMLAISIGVLVYSYLI
>NZ_CP011853.1|WP_193392976.1|1875819_1877355_-|AMP-binding-protein
MNTVVPIGRSANPFARDGVTVDDAGVPHFVDLPASLIAMLARHVQTTPDAEAVVELGGARLTYRQLWDRAARVAGGLRAGGLERGHRVALRYAAGVDWTIAFWGILFAGGIVVAVNTRSTEPEVQYVLDDSGAAVDLAPGVPLPDGAPYVDESASQSDVAALFYTSGTTGRPKGVPTTHEAFLTNTENVARCFAIPADIGPAMRTLICVPLFHVTGCNSQLLVAAFYGGTAVIMPTLDLDALITAITEERITFMVTVPAIYALMLRHPGLAALDTAGVGWVAYGGAPIAPALVQSLKAAFPAARVANGYGMTESASLMTVLPHEDAVDHADSVGYAVASVDLGVVPFDDADETFGELVVRGGNITAEYWQRPDATDATIIDGWLHTGDVVRVDAAGRIRIVDRTKDIINRGGENVSSIEVEAALMTVPGVLEAAVIAVPDDVLGEKVGAVVYGGGEPIDVTGMIAAVAEQIADFKVPQYVAVIDEPLPRNPGGKIVKGRVRDAVTWGPPIR
>NZ_CP011853.1|WP_062392560.1|1877354_1878335_-|phosphotriesterase
MTVVETVKGQVDVDDLGQVLMHEHVFTIGTEIRENYPNYPDPWDEDERVADAVTKLNEVSSRGVRTIVDPTVIGLGRYIPRIQRINAQADINIIVATGIYTYHDEPVQFHFTGPGKAVDLGVDPMSALFVGDIRDGIADTGVKAGLLKCAIDEAGLTPGVERVMRAVAQAHVETGTPITVHTHVGNEGGLIAARVFDEEGCDMSKVVLGHSGDSTDLDYLKKLADTGAVLGMDRFGIDLFSPFEARVRMVAEMVAAGFVSQMVLSHDASCYSDFFPEAARQAALPNWHYTHIHDDVLPALRERGVSDEQITTMLVDNPRAYFTPAS
>NZ_CP011853.1|WP_062395177.1|1878464_1879442_+|metallophosphoesterase
MATLWAISDLHVSHRGNEPILDQIKATSHDDWLIVAGDVAERTDDIIDTLRRLKNRFHTVIWVPGNHELYTTAKDPLQIFGVARYDYLVQACRDIGVITPEDQYPLFDPGDGTPPVRVVPMFLLYDYTFRPEGTATALQALAVAREANVVATDEFLLSPEPYGTRDAWGRARIEATRKRLEAIDPAEKTILINHWPLRREPTDALFYPEFALWCGSELTDDWHTRFNALCCVYGHLHIPRTTWYDDIRFEEVSVGYPREWSRRGLPKPLLRKIAPDDGLRPEDLHEFGARFDIPEDYEERAAEFRARVERTRARRAERNRKDPIQ
>NZ_CP011853.1|WP_062392561.1|1879438_1880113_+|4'-phosphopantetheinyl-transferase-superfamily-protein
MIEDLMPAGVGSAEAFGDPDGLTVLPAEESLIAKAVAKRRREFTTARHCARQALGQIGIEPVPILRGERGMPLWPRQVVGSMTHCDGYRAAVTAYSMQVRSLGIDAEPHDALPEGVLDHTSIEAEREVLATRDGDLHWDRLLFCAKEATYKAWFPITQRWLGFEDAHITFQRDDSIGTAGEPSGTFTSTILIDGAVIDGGTPLLTLPGRWQISRGLILTTIALT

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Crispr_ID: NZ_CP011853_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011853_2

2523634-2523724

Orphan

Consensus_repeat	Method
GGCATGACCCCGCCGCCCCAGACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011853_2

>merge|NZ_CP011853|2|2523634-2523724|CRISPRCasFinder
GGCATGACCCCGCCGCCCCAGACCGGCGCACCGCACTTCGCCGGGCAGCCGTACTCCTCCCAACCGGGCATGACCCCGCCGCCGCAGACCG

>NZ_CP011853|2|2|2523634-2523724|CRISPRCasFinder
GGCATGACCCCGCCGCCCCAGACCG	GCGCACCGCACTTCGCCGGGCAGCCGTACTCCTCCCAACCG
GGCATGACCCCGCCGCCGCAGACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011853.1\|WP_082399909.1\|2528157_2528739_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP011853.1\|WP_062393082.1\|2529401_2529707_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224755
NZ_CP011853.1\|WP_062393074.1\|2526177_2526570_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|119400
NZ_CP011853.1\|WP_062393063.1\|2513206_2514388_-\|acetylornithine-transaminase	unknown	unknown	gnl\|CDD\|235112
NZ_CP011853.1\|WP_120298853.1\|2515287_2516550_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|235441
NZ_CP011853.1\|WP_062393084.1\|2529711_2532570_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP011853.1\|WP_120298721.1\|2528954_2529368_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011853.1\|WP_062393070.1\|2521406_2522459_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP011853.1\|WP_120298720.1\|2514403_2515291_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NZ_CP011853.1\|WP_062393078.1\|2527871_2528066_-\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_CP011853.1\|WP_082399638.1\|2525303_2526158_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP011853.1\|WP_062393061.1\|2512236_2513175_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234835
NZ_CP011853.1\|WP_062393075.1\|2526616_2527432_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NZ_CP011853.1\|WP_062393065.1\|2516603_2517641_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP011853.1\|WP_062393077.1\|2527454_2527835_-\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_CP011853.1\|WP_062393085.1\|2532686_2533385_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293792
NZ_CP011853.1\|WP_062393060.1\|2510119_2511574_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP011853.1\|WP_062393068.1\|2518856_2521334_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP011853.1\|WP_062393067.1\|2517717_2518860_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NZ_CP011853.1\|WP_062395324.1\|2511709_2512222_-\|arginine-repressor	unknown	unknown	gnl\|CDD\|235116

Protein	Function_ID	Function_description	E-value
NZ_CP011853.1\|WP_082399909.1\|2528157_2528739_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	3.56062e-93
NZ_CP011853.1\|WP_062393082.1\|2529401_2529707_+\|hypothetical-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	8.36393e-05
NZ_CP011853.1\|WP_062393074.1\|2526177_2526570_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|119400	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avirulence gene that can convert virulent strains of P. syringae to avirulence on Arabidopsis thaliana, soybean, and bean. The family also includes bacterial tellurite-resistance proteins (trgB); tellurium (Te) compounds are used in industrial processes and had been used as antimicrobial agents in the past. Some members have been described proteins involved in cation transport (chaC).	1.43705e-10
NZ_CP011853.1\|WP_062393063.1\|2513206_2514388_-\|acetylornithine-transaminase	gnl\|CDD\|235112	PRK03244, argD, acetylornithine transaminase.	0
NZ_CP011853.1\|WP_120298853.1\|2515287_2516550_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|235441	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ.	0
NZ_CP011853.1\|WP_062393084.1\|2529711_2532570_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP011853.1\|WP_062393085.1\|2532686_2533385_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	3.24981e-45
NZ_CP011853.1\|WP_062393070.1\|2521406_2522459_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP011853.1\|WP_120298720.1\|2514403_2515291_-\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	6.19437e-139
NZ_CP011853.1\|WP_062393078.1\|2527871_2528066_-\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	6.35241e-22
NZ_CP011853.1\|WP_082399638.1\|2525303_2526158_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.6268e-131
NZ_CP011853.1\|WP_062393061.1\|2512236_2513175_-\|ornithine-carbamoyltransferase	gnl\|CDD\|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	0
NZ_CP011853.1\|WP_062393075.1\|2526616_2527432_-\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	5.69443e-61
NZ_CP011853.1\|WP_062393065.1\|2516603_2517641_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	4.78329e-161
NZ_CP011853.1\|WP_062393077.1\|2527454_2527835_-\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	1.98985e-60
NZ_CP011853.1\|WP_062393060.1\|2510119_2511574_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP011853.1\|WP_062393068.1\|2518856_2521334_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP011853.1\|WP_062393067.1\|2517717_2518860_-\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.35243e-70
NZ_CP011853.1\|WP_062395324.1\|2511709_2512222_-\|arginine-repressor	gnl\|CDD\|235116	PRK03341, PRK03341, arginine repressor; Provisional.	1.41614e-72

>NZ_CP011853.1|WP_062393070.1|2521406_2522459_-|phenylalanine--tRNA-ligase-subunit-alpha
MADDTAVNEFPTSAELDAAVADAVSAFDAATDLESLAKAKAAYFGDRSPIALARRALGSIPKDQRSTAGKLINEVRGKVQAALDARTATLTAERDAAVLVSESIDVTLRSDRRSRGARHPITVIGEQIADVFVGMGWEIAEGPEVETEHHNFDALNFLPDHPARSMQDTFYIAPEGSRQVLRTHTSPVQVRSMLSREVPIYVACPGRTFRTDELDATHTPVFHQIEGLAVDKGLTLANLRGTLEVLAKALFGPETTTRMRASYFPFTEPSAEVDVWFPAKKGGAGWVEWGGCGMVNPNVLRSSGIDPDVYTGFAFGMGLERTLQFRNDLPDMRDMVEGDVRFTRPFGPAL
>NZ_CP011853.1|WP_062393068.1|2518856_2521334_-|phenylalanine--tRNA-ligase-subunit-beta
MRLPESWLTEVLRKGTPDWTASTAEIDAGFVRVGFEIEDVEPFPEITGPLVVGRVAAIEELTEFKKPIRFCQVEVGEDAPRDIVCGARNFGVGDLVVVALPGVVLPGDFAIATRKTYGKTSDGMICSVTELGVGNDHSGILVLAPGTAEPGADAREVLGLVDTAIDVNVTPDRGYAFSMRGLGRELASAFAVPYVDAGLPGEPLPVDVDREPWPVALDEDGKATRYTARIIDGVDATASSPWWMAKRLMVAGIRPISAIVDITNYVMIELGQPLHAFDADKVTGTVRVRAAKSGETLETLDGVTRTLDPEDIVIADDSGAIALAGVMGGAATEVTDSTSTILLESANFDQVRVFRTGKRHKLTSEAAKRFERLVDPAITAVASDRAAALIVEYAGGLVAGALADAQAPAADLPVIEIDPALPDQTAGIGYPAGTTAARLREVGCDVAGTAPLLVTPPTWRPDLRMRADLVEEVLRLEGLEDIPAVVPRAPGGTGLTAAQRRRRAIGTGLAADGYVEVLPYPFLPAGVFDTWGLPNDDPRRGTVSVLNPLESDRPELNTTLLPGLLEMAARNIARGQRDLALYAIGQVVLGGETGPTVPALDVTRRPSAEELAALDASLPKQPLHVGVVLTGLREPTGPLGKGRAADAYDAFEAARQIGKASGVELTLHADDHLPWHPGRCARLEADGVAVGYAGELHPAVLERAGLPARLCAVEIDVDALPLRENLPSPKVSPFPAVLQDVNVVVDAAVAAQDVQDALVAGAGELLESIALFDVFAGEQVGEGHKSLTFALTFRAGDRTLTEDEGSAAKMAAVAHAGEVVGARLR
>NZ_CP011853.1|WP_062393067.1|2517717_2518860_-|metallophosphoesterase
MIRLLVTAVAVALLSFWLHRRLVRLPGVRGRWAVAADIVLAVFGFTMVGAFAVGGPLDPAWARPVGVVGFTWAAVVYYLMLGTLLIAVIRLAARGVARLRGRDAGPHLGRRTTAGATALVAVVSLGTVAYGLVEASSPRIVDESVTMAHLPAEFDGVRVALVTDVHAGPARGGDFVRKVVDRVNAQRPDLVILGGDLTDGSVKHVGPDLQPLQDLRAPLGVFAVSGNHEYYVEDDGGSWLDFWETLGIRTLRNERVELHRGGGVIDLAGVYDRTAPEPYRPDYAKALGGRTADRPVLFIAHQPTQAVDAAEFGADVQLSGHTHDGQMWPNTYLVALTSPVTAGWGDVDGVQVYVTRGAGAWGPPVRVLAPPEITVITLRR
>NZ_CP011853.1|WP_062393065.1|2516603_2517641_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MTIKVAVAGASGYAGGEILRLLCGHPRTLAGELEIGALTAGSNAGTRLGDLHRNLFPLADRILEETTPEVLAGHDVVFLGLPHGQSAAIADALPPSTLIVDCGADFRLEDADEWTTYYGGEHAGTWPYGMPELPGNREIVAGATRIAVPGCYPTVSILTLLPALLAGLVEPTVTIVAMSGTSGAGRSPKVNLLAAEVLGSVRAYGVGGTHRHTPEITQALSRAADMPVAVSFTPVLVPTTRGILATCTARTSASIDEFRVAYEKAYDGEAFVNLLPQGEFPETGSVLGTNMVSIGLSVDERSGTFVAIGAVDNLTKGTGGAAVQSMNLALGWGEGEGLPIVGVAP
>NZ_CP011853.1|WP_120298853.1|2515287_2516550_-|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MTQTPASDAAESIPVPDIDLLVGSRMTRRQGVTAPLGFRAAGIAAGIKASGHPDLALVFNEGPDLGAAAVFTRNQVKAAPVLWTQQVIKSQALRAVILNSGGANACTGPEGFQDSHATAEAVASTLSNWGTDTGAGEVAVCSTGLIGERLPMDKILAGVTEIVHEMAGGIEGGTDAAHAIMTTDTKPKQVALHHTGGWNVGGMAKGAGMLAPSLATMLVVLTTDAKVSPEAVDTALRRATARTFDRLDVDGSISTNDTVLLLSSGASQIEVPQAELDAAVFAVCDDLAGQLQDDAEGVTKRIAITITGAVTEDDALVVARTVGRDSLVKTALFGSDPNWGRVIAAIGAAPVTIDPDRITVAFNGSPICRNGVGVPGAREVDLSGTRIEVVADLGLGDAEATIRTTDLSHAYVEENSAYSS
>NZ_CP011853.1|WP_120298720.1|2514403_2515291_-|acetylglutamate-kinase
MTDTIALDALQKAAVLAESLPALAALHGKRVVVKYGGNAMIDDDLKKAFAADVVLLRACGIHPIVVHGGGPQISAMLRKLDLDGEFRGGFRVTTPEVMDVVRMVLFGQVGRELVGLINAHGPFAVGITGEDARLFTAVRRTALVNGEQVDIGLVGDISSVNTSAVDDLIAAGRIPVVSTIAPDASGQVHNINADTAAGAIAGALGAEHLVMLTDVEGLYTDWPDRSSLVSRITAAEVEALLPRLDAGMVPKMEACMRAVQDGVGAAHVIDGRSPHSVVAALLTSSTSGTTVVADD
>NZ_CP011853.1|WP_062393063.1|2513206_2514388_-|acetylornithine-transaminase
MTAPLQQRWNAALMNNYGTPGIALVRGEGAVVYDADGREYLDLLGGIAVNALGHAHPAIIDAVTTQLSTLGHVSNLYISQPVVELAERLLAAFGHDGRVFLCNSGTEANEAAFKLARRTGRPQIIAAEGGFHGRSMGSLAMTGQPGKRAPFEPMPAGVDFVPFGDADALRAAVSEQTAAVILEPIQGEKGVIVPPADYLAQARAITAEHGALLMLDEVQTGIARTGWMFAHQRAGIVPDVMTLAKGLGGGLPIGAAIATGPAADLFGPGDHGTTFGGNPACAAAALAVLKYIDDNDLLAHVEHVGKALASGIEDLGHPQIAHVRGDGLLLGVVLNSPIAKAAESAARDAGYLINAPAADVLRLAPPLILTDQQAAGFVAGLPAILDAATAAQA
>NZ_CP011853.1|WP_062393061.1|2512236_2513175_-|ornithine-carbamoyltransferase
MSETTTVRHFLRDDDLTPAEQAEVLALAAEMKRDRFAFRPLEGPRAVGVIFDKNSTRTRFSFEVGISQLGGHAVVVDGANTQMGRDESFADTGRVLSRFVDAIVWRTFGQDRLEAVAEYSSVPVVNALSDSFHPCQILADLQTIIERKGKAAGLTMTYLGDAANNMAHSLMLGGVTAGMHVRISGPAAFQPDPEVVAATQRRAAETGGSVELISDPIAAATGADVLVTDTWTSMGQESDGLDRVGPFRPYQINSELLGYAADDAIVLHCLPAHRGEEITDEVIDGPASVVFDEAENRLHAQKALLAWIMERA
>NZ_CP011853.1|WP_062395324.1|2511709_2512222_-|arginine-repressor
MTASDSDRSESARLAATRAGRHARIVEILAAEQVRSQGELQQRLSELGVEATQATISRDLEELGAVKLRAADGGVGVYVVPEDGSPVRGVSGGTDKVSRLVSELLVSTDSSGDMAVLRTPPGAAGYLASALDRARLPGVVGTIAGDDTIFVLARRPLTGADLAARIEGLV
>NZ_CP011853.1|WP_062393060.1|2510119_2511574_-|argininosuccinate-lyase
MATADNTASTTPDHEGTNEGALWGGRFADGPAAAMAALSKSTHFDWALAPYDIQASKAHARVLAKAGLLTEADAATMQAGLDRLAADVADGTFQPAESDEDVHGALERGLIERVGADVGGRLRAGRSRNDQVATLFRMWLRDAMRRVGAGVLDLAEALVFQAAANPGVVMPGKTHLQAAQPVLLGHTLMAHAQPLLRDVARLVDADRRVAVSPYGAGALAGSSLGLDPEAIAADLGFDRAADNSIDATSSRDFAAEAAFVFAMTAVDMSRLGEDVILWSTPEYDYVTLADAWSTGSSIMPQKKNPDVAELARGKAGRIIGNLTGLLATLKAQPLAYNRDLQEDKEPVFDSVAQLELLLPAMAGLVSTLVFHPDRMAELAPAGFTLATDIAEWLVREGVPFRVAHEVAGACVREAEQRGVGLDELDDETMAAINPALTPKVREVLTVTGSIESRNALGGTASPQVQRQIEVATARIAELRAALDR
>NZ_CP011853.1|WP_082399638.1|2525303_2526158_-|ABC-transporter-ATP-binding-protein
MTTSAQIEESSPSTVVTPAARPRLCAERLSVGYDATTIIENLDVEIRTGQVTTIVGPNGCGKSTLLRTLSRLLTPSAGRVLLDGHDIADQKPKHVARTLGLLPQNPVAPDGLTVSDLVSRGRHPHQSWFRQWSSDDEQAVAQAMELTSTTALADRAVDSLSGGQRQRVWIAMTLAQQTDLILLDEPTTYLDLAHAVDVLDLVDELRTDHGKTVVMVLHDLNLAARYSDALVVMRAGEIVAEGAPEDVLTPELLAASFGLTSQIVSDPISGTPMVVPIGRRGRCL
>NZ_CP011853.1|WP_062393074.1|2526177_2526570_-|gamma-glutamylcyclotransferase
MNVLFSYGTLMDPVVQEGVLGRRLSTIPDALPGFRVDTVTITDPAVVALSGIDTHLILRPDPTAEPVPGARLELDDAGLAAADEYEVDDYRRVRAVLSSGVLAWVYLAAEDAAEWNRMVDTDQSGVANQN
>NZ_CP011853.1|WP_062393075.1|2526616_2527432_-|RNA-methyltransferase
MTDFRPATNVLTERSSRVVSLAKLHRSSVRRSEGRFLVEGFNSVDAALTTGRAQQLLVRDDDSERNADLVDRAVTAGVPVHWLNRRAADKLSETTTTPGVFAVCDLLTVDLDTVLADAPRLLVVAVEPREPGNLGTLTRCADAMGADAVILLGDSVDPHNGKSVRASAGSVFHVPVVRHADVDGGLVAVSAAGVATLATTMDGEVDLDDADELLAAPHAWLFGNEAHGLPDGVLAGADHRVRIPLRGRAESLNLAAASAVCLYASARVQNR
>NZ_CP011853.1|WP_062393077.1|2527454_2527835_-|50S-ribosomal-protein-L20
MARVKRAVNAQKKRRSVLEASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRKARKGDFRKLWITRINAAARANDITYNRFIQGLKLAGVEVDRKVLADIAVTDPAAFTGLVEVARKALPADVNAPVA
>NZ_CP011853.1|WP_062393078.1|2527871_2528066_-|50S-ribosomal-protein-L35
MPKSKTHKGTSKRFKVTGSGKIVRQKAGKRHLLEHKSSRVTRRLSGIEVVSENDAPRIKRLLNR
>NZ_CP011853.1|WP_082399909.1|2528157_2528739_-|translation-initiation-factor-IF-3
MENIDRGGHISTETRINERIRVPEVRLVGPGGEQVGIVRVEDALRLAYEADLDLVEVAPDARPPVCKIMDYGKFKYEAAQKKRESRRNQQMTVIKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIMFRGREQSRPELGYRLLQRLGDDVAEYGFVETSAKQDGRNMTMVLAPHKGAKTRAKAQQPHQGS
>NZ_CP011853.1|WP_120298721.1|2528954_2529368_+|hypothetical-protein
MSPNSYSPDQSASDDHSHVHVAGGASGSAPDENVRDLIDIPAVEVITRSAVMLMSSAAEKLGLAEGADPDSIDLPEARSLIHALAGLVVAALGDLGMHRQPLQDGLRALQLAFREASAYPDEPGEGPGELFTGPVKA
>NZ_CP011853.1|WP_062393082.1|2529401_2529707_+|hypothetical-protein
MTSGSHSPGDDDILDAEIVPAPDFTPSVQAPSFEEVTGYTEAGVPTFDHVRDKIEQRTATAIGGQELAESGREAAALDEAMAKRDEAAKDKLAEIRKSMGL
>NZ_CP011853.1|WP_062393084.1|2529711_2532570_-|excinuclease-ABC-subunit-UvrA
MVDRLIVRGAREHNLRGVDVDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGTAHCPVCGEKISRQTPQQIVDQVLTLDEGVRFQVLAPVVRSRKGEFVDLFADLQVQGFARAMVDGTVYQLADPPKLKKQEKHDIDVVVDRLVVKPSARQRLTDSVETALRLADGIVVLDFVDVDEDDPNRQRRFSEKMACPNSHPIAIDDLEPRSFSFNSPFGACPECDGLGVRKEVDESLVVPDPERTIRDGAIAPWSTGHNADYFLRLIEGLGDQMGFDVDTPWESLPKAARKALLNGSEHQVHVKFRNRYGRTRSYYTEFEGVMAFLSRRAEATESEQMKDRYEGYMRDVPCPACHGARLRPEILSVTLDHPIHGPKSIADVTAMSVADCADYLNGLQLGEREAAIAGRVLKEVQARITFLLDVGLEYLSLARAAGSLSGGEAQRIRLATQIGAGLAGVLYVLDEPSIGLHQRDNRRLIDTLVRLRDLGNTLIVVEHDEDTIRAADWIVDIGPRAGEQGGKVVHSGSYEDLLTSPESITGAYLSGREVLPVPAIRRPIDKKRQITVVGATENNLRGIDVSFPLGVLTAVTGVSGSGKSTLVNDILATVLANKLNGARQVPGHHKRIKGLEELDKLVQVDQSPIGRTPRSNPATYTGVFDKIRTLFAATTEAKVRGYQPGRFSFNVKGGRCEACTGEGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSISEVLDMPIDEAAEFFEPVTSIHRYLKTLVDVGLGYVRLGQPAPTLSGGEAQRVKLAAELQKRSTGRTVYILDEPTTGLHFDDIQKLLQVINGLVDKGNTVIVIEHNLDVIKTADWIIDMGPEGGSGGGTVVAQGTPEHIASVPESHTGTFVKELLPG
>NZ_CP011853.1|WP_062393085.1|2532686_2533385_+|MBL-fold-metallo-hydrolase
MSIQVELTDDYTGDVSPDPERHGAHAQRRVLDNATVVKISVGPMDNNVYVITDLATQKSLLIDAANDPETILALLDNLPGTVTQILTSHGHFDHWQGLEEVHRVLQVPTVVGAADADELPLDPDRTLVGGETIEVGDLSLEVIAIPGHTAGSVTLVLTENSGRVHLFTGDTLFPGGVGKTWQPGDFEILLDGVITKLFDRFGDDTAVYPGHGKDTDLGTERPHLDEWRERGW

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Crispr_ID: NZ_CP011853_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011853_3

3581240-3581328

Orphan

Consensus_repeat	Method
CTCGCGCCCGCGCGCGCGTGGAGCAGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011853_3

>merge|NZ_CP011853|3|3581240-3581328|CRISPRCasFinder
CTCGCGCCCGCGCGCGCGTGGAGCAGACCAGAAACTTCATAAGGCTCTGATCGGCGTCCCACTCGCGCCCGCGCGCGCGTGGAGCAGAC

>NZ_CP011853|3|3|3581240-3581328|CRISPRCasFinder
CTCGCGCCCGCGCGCGCGTGGAGCAGAC	CAGAAACTTCATAAGGCTCTGATCGGCGTCCCA
CTCGCGCCCGCGCGCGCGTGGAGCAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011853.1\|WP_062393937.1\|3583134_3584172_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340837
NZ_CP011853.1\|WP_062393929.1\|3576994_3577369_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379158
NZ_CP011853.1\|WP_062393927.1\|3576151_3576364_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011853.1\|WP_120298756.1\|3576593_3576998_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP011853.1\|WP_082399748.1\|3587767_3588817_-\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP011853.1\|WP_062393926.1\|3575138_3576152_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|316042
NZ_CP011853.1\|WP_062393925.1\|3574815_3575142_+\|DUF2742-domain-containing-protein	unknown	unknown	gnl\|CDD\|371285
NZ_CP011853.1\|WP_062393928.1\|3576360_3576597_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011853.1\|WP_062393934.1\|3581450_3582296_+\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NZ_CP011853.1\|WP_062393942.1\|3589399_3590389_+\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NZ_CP011853.1\|WP_062393933.1\|3580689_3581127_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011853.1\|WP_062393936.1\|3582609_3582948_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011853.1\|WP_062393938.1\|3584171_3585341_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367570
NZ_CP011853.1\|WP_062393935.1\|3582295_3582613_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011853.1\|WP_062393939.1\|3585337_3586609_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|224423
NZ_CP011853.1\|WP_157851083.1\|3586605_3587730_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226453
NZ_CP011853.1\|WP_157851084.1\|3588809_3589196_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367147
NZ_CP011853.1\|WP_062393930.1\|3577368_3578835_+\|terminase	unknown	unknown	gnl\|CDD\|226974
NZ_CP011853.1\|WP_157851082.1\|3580216_3580693_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011853.1\|WP_062393931.1\|3578831_3580112_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377466

Protein	Function_ID	Function_description	E-value
NZ_CP011853.1\|WP_062393929.1\|3576994_3577369_+\|HNH-endonuclease	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	8.63906e-13
NZ_CP011853.1\|WP_120298756.1\|3576593_3576998_+\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	0.000310145
NZ_CP011853.1\|WP_082399748.1\|3587767_3588817_-\|ISAs1-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.2351e-13
NZ_CP011853.1\|WP_062393926.1\|3575138_3576152_+\|AAA-family-ATPase	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	1.42643e-08
NZ_CP011853.1\|WP_062393925.1\|3574815_3575142_+\|DUF2742-domain-containing-protein	gnl\|CDD\|371285	pfam10888, DUF2742, Protein of unknown function (DUF2742). Members in this family of phage proteins are the product of the gene phiRv1, however no function is known.	4.13855e-07
NZ_CP011853.1\|WP_062393934.1\|3581450_3582296_+\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	8.13549e-33
NZ_CP011853.1\|WP_062393942.1\|3589399_3590389_+\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	3.57051e-165
NZ_CP011853.1\|WP_062393938.1\|3584171_3585341_-\|hypothetical-protein	gnl\|CDD\|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	1.97447e-09
NZ_CP011853.1\|WP_062393939.1\|3585337_3586609_-\|alpha/beta-hydrolase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.70941e-07
NZ_CP011853.1\|WP_062393930.1\|3577368_3578835_+\|terminase	gnl\|CDD\|226974	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only].	3.08137e-32
NZ_CP011853.1\|WP_157851084.1\|3588809_3589196_-\|hypothetical-protein	gnl\|CDD\|367147	pfam02706, Wzz, Chain length determinant protein. This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.	1.86716e-09
NZ_CP011853.1\|WP_157851083.1\|3586605_3587730_-\|hypothetical-protein	gnl\|CDD\|226453	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].	1.54423e-28
NZ_CP011853.1\|WP_062393937.1\|3583134_3584172_-\|glycosyltransferase	gnl\|CDD\|340837	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.	5.83654e-31
NZ_CP011853.1\|WP_062393931.1\|3578831_3580112_+\|phage-portal-protein	gnl\|CDD\|377466	pfam05133, Phage_prot_Gp6, Phage portal protein, SPP1 Gp6-like. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. During SPP1 morphogenesis, Gp6 participates in the procapsid assembly reaction. This family also includes the old Pfam family Phage_min_cap (PF05126).	1.68875e-33

>NZ_CP011853.1|WP_062393933.1|3580689_3581127_+|hypothetical-protein
MNDPQDQTVDEVPDLESENLEEVSDTESPTSSDLESEQDDTFSREYVEKLRQENGKYRQRAQRADDLAHRLHRALVAADGRLQDPTDLDFSDDHLTEDGVSLTEAIDDLLKRKPHLAARRPIGDVGQGATTTPGEVNLLGILGGR
>NZ_CP011853.1|WP_157851082.1|3580216_3580693_+|hypothetical-protein
MRIIAQLIAEANGRARNLADMAMAAQMMIELGEPLPVQGVDHPDEIPRLMKAANTTLTVAETSEVSEAIVARLARSEPLEAAANAAQDAMVRSGLTKGWIRQKSADACQLCEWWWREGRVWPAEHPFQHHKGCTCSPKPVLREGIKETMKTARAKGIR
>NZ_CP011853.1|WP_062393931.1|3578831_3580112_+|phage-portal-protein
MTDTLTTLLQRLDEPAARYSELEHYYSGTQPLAFLAPESRTALGDRFGRMASNIPRLAITSLTERLRVTGFSGVDVWDAWLRNDLDQTSTIAHREALLLGASYAIVWADHLGRPKVTIESAKQVTMLTDPGTRQPVAALKRWETATTTEAVLYGPAEIVRLRAEQPGATTQGFKVIETLTNPLGVVPVVRLTNSDRLLDDGVSEIEDLKPLVDALNKTLTDMLTTSEYVGRPRRWATGIELEEDEQGDAVNPIPEGNRAMISENPDAKFGQLDSANLGGYEAAVRIILGQIMAVSALPSHYIGQLTATPPSADALRAAEASLTARAQARQQVFGRAWEQVARLIVAVRDGADPHRVEPRIVWADPATRSIGQEADAIVKLYSSGLLPADYALQRLGYGDDEITAIRKARQTAALDNAAVDLSKLVS
>NZ_CP011853.1|WP_062393930.1|3577368_3578835_+|terminase
MRAGPKAAVSAEPLPFRPRSEVESERFLAFADKFLRVPKGTNSRGKLHLRDWQVEIAEDVLDSGARTVGLMLPRGSGKTTLNAAIGLYAFFCWGDGANVVVFAVDERQAGLAFSAARRMVELSPELAERAQVFKDRLYIPATDSSFAVYPASPAAAEGLDYVLAIVDEAGVVNRDLFEVVQLAQGKREKSVLVAIGTPGPNVDDQVLLSLRDYALAHPDDETMRWREHSAVGFEDHPVDCEHCWKLANPALDDFLHRDALVALLPPKTREATFRRARLCQFATDVDGAFLPPGVWDSLANGEPVPDGMDVVVALDGSFSDDTTALLVGTVSTEPHVDKIKVWERPPGDDSWRVPVAEVEDEIRAACRRWNVLEIVADPFRWTRTLQVLESERLPILEFPHSPSRLTAATGDLYSAALNGRLSHSGDSTLAAHVGAAVIVEDARGIRLAKQSRSRKARKIDLAACLVMAHSRATWRATRKTRRKTRSFK
>NZ_CP011853.1|WP_062393929.1|3576994_3577369_+|HNH-endonuclease
MNCSWEGCDRAIHSRGYCGSHYNRAIKEGILLRRRDMPFWEVDGSGCWIWNRKIRPDGYGRKSLGKYVQVPAHRWVYEQCVGPIPDGLELDHLCNVRACVNPDHLEPVTHTENMLRQWRRKRAA
>NZ_CP011853.1|WP_120298756.1|3576593_3576998_+|HNH-endonuclease
MIARPCRTCGDPIPTGTYCSECKPNDKANRPRHDAHLNRTRWKKLSKRLRAMQAFCSACGATEDLTVDHIQPLHLRPDLAYTLTNLDVLCRSCNGAKDADLGRRTKSPGQPPHVKAQKALHFGLSPEKDGGEAA
>NZ_CP011853.1|WP_062393928.1|3576360_3576597_+|hypothetical-protein
MIDHDDNLIRLSPTGHINLAVFDANTSIGPIECPVLSFTDQRLGDFALLLDPILEQAQHLHALLGAYLQGHYDRQEEG
>NZ_CP011853.1|WP_062393927.1|3576151_3576364_+|hypothetical-protein
MTRKRRSHNCLGCQRPTKSVTRYCSDCRPAAAHPYVQKVDGLITFAGQTYTTDQARHLADAIHDCIEETP
>NZ_CP011853.1|WP_062393926.1|3575138_3576152_+|AAA-family-ATPase
MNDTQSCNSPMGTVATLHTESVNPVATELCGYVNVAAILDGSAIEPPVPSVCLRSDGIGLFYEGQFNVVFGDPESGKTLLCDFATVEVLAAGGRVLRLDLDHNGPQSTLSRLIDFGADETTLRDVDRFLYVEPAERVQMLHIIEHMEDWQPTLVILDSIGELLPLYGSNSNSADEFTDVHTRVIKPLTRTGAAVVGIDHLAKGADSRAYGPTGTAAKRRAIGGTSIRVKVDQAFTPDAGGSAYLSIHKDRHGGLRRHSPSGDREPLAGKFCILGDTITVQAPLSTDRNPEEKAPEADIAEIAKLDPAPTSARETRERLRWSDKRARTAFKSWQKESA
>NZ_CP011853.1|WP_062393925.1|3574815_3575142_+|DUF2742-domain-containing-protein
MTHGVNWDAVHPYVRRVLGGKYGSVPILGTTEWQQLEDDDPAKVASIIVAGDRWALEEHLLEKAAQRAALKDAAVEASQELDWARVAKGIADRDAFYRQHPDLRRKTA
>NZ_CP011853.1|WP_062393934.1|3581450_3582296_+|phage-major-capsid-protein
MVESTATNSTLLAEQVSSLLVQPLEAASVVLGSGPRIFDTASELRIPKLVSSGTPAFVAEGGLIADTHDVAFDEVKLMPTERTSIKTILRYTNELVRQSVIGIDAVLKARLVHDVSDLLDDALLQGAGTSNSITGITKQTGITTGTLDVADPDSLLDAIAALNAKEITPNRWFLSGADFAALRKLKEGTSSNRYLLEPDPSKQSGSTLFGIPATVTNKLAAGTAILADMSTVAIARDTSPSVTVLNERYAEYDQVGLRVTCRYDLGLLHPEAVSVLTAVTP
>NZ_CP011853.1|WP_062393935.1|3582295_3582613_+|hypothetical-protein
MTAPTGADIAAFLGQGDDTTLVALAGQHVTIITAMARAYTRGEGFTETGPADDLAAVITTATARLVTNPEQSEDLAIGSYRTKGGFQGWTLAELFVLNRYRKKAR
>NZ_CP011853.1|WP_062393936.1|3582609_3582948_+|hypothetical-protein
MIYRDRVKLKMLVDTGEEDAHGNPVKSVIEQYVLANVWPLGTDQKVDSTRTYVRTRYQMILAPTVDIPAGIGNDLSIIWRDYLELFADGSVERHYRGSKLHHYELITKAIIG
>NZ_CP011853.1|WP_062393937.1|3583134_3584172_-|glycosyltransferase
MTLRVIHVAEAYGGGVQTAIAAYIAATPQYEHELIVRARDGQDTARIPDGVAVTRLDGALVGFLAGAARMLWDADFDIVHLHSSFAGVLRALIPSRGAIVYTPHCYATESVSGWRRRIYWAAERALSARPQTVLAVSDRESRLARALTDRAVVVTVPNAVPAGLRQAPMHAGHKGGRRVVAIGRICAQKGPTFFAAVAQLVGDRAEFIWIGDGDEGREALLAAGVEITGWRRPEVVRAWLEDADLCLHTAAWEGSPLATLEAAAAGLPVVARGIESMRSLGYVDAGSDPSQVAATVVAFFADESERLRVCEATRALRSRYSDTAMATALGAAYETAVTSGGRRHR
>NZ_CP011853.1|WP_062393938.1|3584171_3585341_-|hypothetical-protein
MTRWTKFVAAVVSVLLALTACRGAAADDREGVSLPVAGGDVVSAENFPRLDSSIRAVGATAIRVRYKSWSAITGAPTVVGGALFAPIGAPPRHGRTLVVVAHERAGADVGCAPSQSADLAGLAPIVRNYLQLGYAVAVPDYRGSGPGDGHVYLDNQTSGRTVLDIVRAARASLSDLGSVWVGFGVGEGAGALWAASESASEIPGEVLVGTAVVSPVVSVTDLVQRAAGRTLNDAQKLAYVWVLKGLEASSPGFEIDDYRRGGASQVWSSLGGCAGADDARKRALAAVSADDLVPVDDKARRRLLDIAARMDVPSRRALAPMIVYYGGRDTVADPATVHRAIRRACDSGSLIQEVSQPDRTDAEVDATPYLEWIGHRLSGDPLGRTCGSE
>NZ_CP011853.1|WP_062393939.1|3585337_3586609_-|alpha/beta-hydrolase
MTRSTKLVTVIVAVLSLVACAPGSDYRTPPGLTVVPSITAPTRADQPLPEGFPRLGGVGPGALLSLAAFGDIDPKVYETGADTWRMVYRTVDPDGRSVSATGVLSIPGGTPPKGGWPLLVYTHGNTGVDYDCGPSLRPDLAKLASTVGAWLDNGYAVVVPDYQGIGGDRSSPGLPFLNAPVLGQDVINAVRAVRRATPDVTRQFAIFGRSLGATAAWGANGAIGRTELAKDLLGVVALVPPVDLTQLPQRAAAGTLMRDETLLYYFTVAQLKRTVRPTIDLGDYFRGALISREDLARKCTGPRSAEAARLLQGVGPGEVVKPTPENAARMSEALAALRPESKLTAPMYVLYGGQDHYVDPASVARALDRACGAGSVIEWYLLPLGGHENLGGSASTNAIDWVRSRFEGVAPRDFCRRPSKAAS
>NZ_CP011853.1|WP_157851083.1|3586605_3587730_-|hypothetical-protein
MSDAYQGNLFTQQRMVSYEALATSRQVAEATVRTLGLKETADQVRSHVTAAAVPESALMDITATSSNPEQARDVANTVAAETARLIMKIETSERGGNPAASAQILDGAKLPANSSSPRPVRNLLFGLSAGLILGVVFAFLRDIFDPKVRDIREVERGLGCQVLAVCEPGTADSPALVEGFRTAERLSRGLSEERKSAVILTGVGRESDQAAVAGATDLATGLAESGRTVVLVETDRKMPGLAPHARPAQVDRFGRPSELVTVAPNIGAVQANDDVPARLLARAAAVIGRYSKGSAVVVACAPASSSADVVELAESPDVSGAIVAVRLGVSERKDLVAAASRLSQGGVTVIGAVVQRKGGLEASSSRRRFGRTRR
>NZ_CP011853.1|WP_082399748.1|3587767_3588817_-|ISAs1-family-transposase
MSDPRSRRGRRFELAPMLAAAVVATLGGARSFAALAQSVASLSPAERAMLGLGDTSPEESTWRKLFARLDTDLLDAIVGSWMFARTTIRARRRVIAIDGKTVRGARTDDDRAPHLVAGLDHHFGVVLGQVCADMKSNEIPAARTLLASIDLSGTVVTADAMHTQTATAQAILDGHADYLLTVKGNMPTLHAYLKDIDWKSVPATSSVQTGHGRRVRRTIKVVDAPKWIEFPGAAQVAQIRRTATDRKTAKRTCEVVYIITSAPFTDAKPETLAEWTCGHWSIENKLHWVRDVSFGEDASKVRTGQAPRVMASLRNTAISLLRLADVTNIAAALRHHHKHADQAMKLVLT
>NZ_CP011853.1|WP_157851084.1|3588809_3589196_-|hypothetical-protein
MDIQDYFSVVRRRILLIGAVAVLATAVAGVVTALSVPEYQATSRIFVQTAGGSSRAPECSERKGLTCKFVAVGPVCRLWREWLLGLDGNRQKTVQPRRPLPHVIFSRRKHCRQHDPPGISDLSTGRDV
>NZ_CP011853.1|WP_062393942.1|3589399_3590389_+|GDP-mannose-4,6-dehydratase
MKTALITGITGQDGLYLSEFLHSRGYRVFGLVRGQNNPKAEALARTHPYVTVLHGNLLDISSLVRAVAVAAPDEVYNLGAISYVAYSWDNALMTSDVTGRGVLNMLEAIRLYEEHAEKRVRFYQASSSEMFGKVQSVPQHEGTLLWPRSPYGVAKTFGHYITINYRESYGMHASSGILFNHESPRRGPEFVTRKVTRAVAEISLGLRSSIALGNLDAQRDWGFAGDYVEAMWLMLQQDVADDYVIATGVTHSIRDLLDVAFQEIGIADWHPYVHQDPALIRPAEVDQLIGDASKARRQLGWQPRVSFEELIRMMVRSDLDAHVSAQEAV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

58589 : 110160

Mycobacterium_phage(21.43%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101852925.1\|58589_59558_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_024476692.1\|59788_61396_-	recombinase family protein	A0A2P1JZS6	Mycobacterium_phage	6.2e-26	28.1
WP_062391172.1\|62861_64253_+\|transposase	IS1380 family transposase	A0A222ZN33	Mycobacterium_phage	1.0e-117	54.0
WP_062391173.1\|64392_64638_-	hypothetical protein	NA	NA	NA	NA
WP_062391174.1\|64948_66292_-	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_062391175.1\|66507_67449_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_162234635.1\|67638_68577_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_062391177.1\|68933_70046_+	NDMA-dependent alcohol dehydrogenase	E3SJ82	Synechococcus_phage	2.0e-31	30.2
WP_062391178.1\|70085_71537_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_062391179.1\|71606_72803_+	thiolase family protein	NA	NA	NA	NA
WP_082399278.1\|72807_73119_+	AMP-binding protein	NA	NA	NA	NA
WP_062391172.1\|73200_74592_+\|transposase	IS1380 family transposase	A0A222ZN33	Mycobacterium_phage	1.0e-117	54.0
WP_157850971.1\|74643_76101_+	SIR2 family protein	Q38324	Lactococcus_phage	1.6e-12	22.6
WP_157850972.1\|76097_76967_+	sce7726 family protein	NA	NA	NA	NA
WP_157850973.1\|76953_77892_+	sce7725 family protein	NA	NA	NA	NA
WP_157850974.1\|77992_78346_-	hypothetical protein	NA	NA	NA	NA
WP_062391184.1\|78441_79467_-	hypothetical protein	NA	NA	NA	NA
WP_157850975.1\|79908_80397_-	LppP/LprE family lipoprotein	NA	NA	NA	NA
WP_082399850.1\|80589_80973_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_062391187.1\|81057_82920_-	DUF3556 domain-containing protein	NA	NA	NA	NA
WP_062391188.1\|82929_84393_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	2.0e-39	27.9
WP_062391189.1\|84405_85176_-	glucose 1-dehydrogenase	W8CYX9	Bacillus_phage	8.9e-07	35.5
WP_193392927.1\|85390_86683_+	PucR family transcriptional regulator	NA	NA	NA	NA
WP_062391190.1\|86706_87075_-	PLDc N-terminal domain-containing protein	NA	NA	NA	NA
WP_062391191.1\|87236_88238_+	diaminopimelate dehydrogenase	NA	NA	NA	NA
WP_062394784.1\|88338_89208_+	universal stress protein	NA	NA	NA	NA
WP_062391192.1\|89315_90743_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_157850976.1\|90873_91695_-	DUF4190 domain-containing protein	NA	NA	NA	NA
WP_193392928.1\|91718_91871_-	hypothetical protein	NA	NA	NA	NA
WP_062391194.1\|91939_92470_+	peptidylprolyl isomerase	A0A1V0S9I2	Catovirus	6.8e-22	41.4
WP_082399280.1\|92471_93341_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_062391196.1\|93380_93836_-	PH domain-containing protein	NA	NA	NA	NA
WP_062391197.1\|93895_94174_-	cell division protein CrgA	NA	NA	NA	NA
WP_062391198.1\|94229_94883_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	7.0e-45	46.4
WP_062391199.1\|94895_96818_-	Stk1 family PASTA domain-containing Ser/Thr kinase	V5L5T2	Insectomime_virus	1.1e-16	31.0
WP_062391200.1\|96824_98183_-	serine/threonine protein kinase	A0A1E1EXG0	Acanthamoeba_castellanii_mimivirus	2.0e-09	23.6
WP_062391201.1\|98179_99682_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_062391202.1\|99678_101103_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_062391203.1\|101099_102530_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_062391204.1\|102526_102991_-	FHA domain-containing protein	NA	NA	NA	NA
WP_193392929.1\|103092_104514_-	DUF3662 domain-containing protein	NA	NA	NA	NA
WP_062391206.1\|106700_107453_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	6.7e-15	27.2
WP_062391207.1\|107452_109039_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	5.5e-67	35.9
WP_062391209.1\|109428_110160_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.4e-41	40.8

DBSCAN-SWA_2

3557923 : 3588817

Corynebacterium_phage(20.0%)

integrase,protease,transposase,terminase,portal,capsid

attL 3556828:3556844|attR 3583673:3583689

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3556828:3556844	attL	NA	NA	NA	NA
WP_062393909.1\|3557923_3558793_-\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_062393910.1\|3558915_3559935_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_062393911.1\|3560035_3561295_+	geranylgeranyl reductase family protein	NA	NA	NA	NA
WP_062393912.1\|3561345_3562059_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA
WP_062393913.1\|3562069_3562498_-	hypothetical protein	NA	NA	NA	NA
WP_062393914.1\|3562494_3564186_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_062393915.1\|3564251_3564869_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_062393916.1\|3564929_3566177_+	saccharopine dehydrogenase NADP-binding domain-containing protein	NA	NA	NA	NA
WP_082399932.1\|3566238_3567114_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_062395556.1\|3567262_3567919_-	PaaI family thioesterase	NA	NA	NA	NA
WP_062393918.1\|3567965_3568640_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_062393919.1\|3568644_3569421_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_062393920.1\|3569446_3570535_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_062395557.1\|3570679_3571306_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_062393921.1\|3571310_3572246_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_082399740.1\|3572242_3573430_-\|integrase	site-specific integrase	A0A1P8D5R0	Corynebacterium_phage	4.0e-22	23.9
WP_062393922.1\|3573413_3573875_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062393923.1\|3573961_3574183_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157851081.1\|3574179_3574344_+	hypothetical protein	NA	NA	NA	NA
WP_062393924.1\|3574336_3574819_+	hypothetical protein	NA	NA	NA	NA
WP_062393925.1\|3574815_3575142_+	DUF2742 domain-containing protein	NA	NA	NA	NA
WP_062393926.1\|3575138_3576152_+	AAA family ATPase	NA	NA	NA	NA
WP_062393927.1\|3576151_3576364_+	hypothetical protein	NA	NA	NA	NA
WP_062393928.1\|3576360_3576597_+	hypothetical protein	NA	NA	NA	NA
WP_120298756.1\|3576593_3576998_+	HNH endonuclease	NA	NA	NA	NA
WP_062393929.1\|3576994_3577369_+	HNH endonuclease	R4JQQ9	Mycobacterium_phage	9.3e-18	53.8
WP_062393930.1\|3577368_3578835_+\|terminase	terminase	K4I089	Streptomyces_virus	7.8e-52	37.0
WP_062393931.1\|3578831_3580112_+\|portal	phage portal protein	A0A2H4JAT8	uncultured_Caudovirales_phage	1.2e-45	32.3
WP_157851082.1\|3580216_3580693_+	hypothetical protein	NA	NA	NA	NA
WP_062393933.1\|3580689_3581127_+	hypothetical protein	NA	NA	NA	NA
WP_062393934.1\|3581450_3582296_+\|capsid	phage major capsid protein	D6PFS1	uncultured_phage	7.0e-05	23.6
WP_062393935.1\|3582295_3582613_+	hypothetical protein	NA	NA	NA	NA
WP_062393936.1\|3582609_3582948_+	hypothetical protein	NA	NA	NA	NA
WP_062393937.1\|3583134_3584172_-	glycosyltransferase	NA	NA	NA	NA
3583673:3583689	attR	NA	NA	NA	NA
WP_062393938.1\|3584171_3585341_-	hypothetical protein	NA	NA	NA	NA
WP_062393939.1\|3585337_3586609_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_157851083.1\|3586605_3587730_-	hypothetical protein	NA	NA	NA	NA
WP_082399748.1\|3587767_3588817_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

4085994 : 4111789

Staphylococcus_phage(25.0%)

transposase,integrase

attL 4105687:4105701|attR 4114210:4114224

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082399748.1\|4085994_4087044_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_062394392.1\|4087282_4087561_-	hypothetical protein	NA	NA	NA	NA
WP_193392986.1\|4087726_4088746_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.0e-26	29.9
WP_119699221.1\|4089016_4090528_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.1e-16	27.6
WP_062394395.1\|4090524_4091313_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-33	35.3
WP_075844772.1\|4091756_4092500_+	DUF4839 domain-containing protein	NA	NA	NA	NA
WP_006898340.1\|4093854_4094511_+	hypothetical protein	NA	NA	NA	NA
WP_157851102.1\|4094783_4095614_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_062394399.1\|4096919_4097288_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062394401.1\|4097291_4097864_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_062392907.1\|4098138_4099056_-	hypothetical protein	NA	NA	NA	NA
WP_006896186.1\|4100498_4100975_-	PaaI family thioesterase	NA	NA	NA	NA
WP_006896187.1\|4101089_4101716_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_006896188.1\|4101802_4104844_+	MMPL family transporter	NA	NA	NA	NA
WP_006896189.1\|4104882_4106106_-\|transposase	IS110 family transposase	NA	NA	NA	NA
4105687:4105701	attL	NA	NA	NA	NA
WP_120298844.1\|4106058_4107309_+	metallophosphoesterase	NA	NA	NA	NA
WP_120298718.1\|4107271_4108541_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	9.2e-25	31.7
WP_193392899.1\|4108612_4108783_+	hypothetical protein	NA	NA	NA	NA
WP_062395269.1\|4108794_4110255_-	hypothetical protein	NA	NA	NA	NA
WP_062392913.1\|4110275_4110641_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062392914.1\|4110637_4111789_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
4114210:4114224	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011853

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection