CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012830	Pseudomonas fluorescens strain FW300-N2E3 chromosome, complete genome	5 crisprs	RT,DEDDh,cas3,csa3,DinG,WYL	0	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012830_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012830_1

18686-18786

Orphan

Consensus_repeat	Method
AGCTCCCACAGTAGATCTATGTACATCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012830_1

>merge|NZ_CP012830|1|18686-18786|CRISPRCasFinder
AGCTCCCACAGTAGATCTATGTACATCTGCAAGAGATGGGTCGGCTGTCCGGCCGCCATCGCGGGTAAGCCTAGCTCCCACAGTAGATCTATGTACATCTG

>NZ_CP012830|1|1|18686-18786|CRISPRCasFinder
AGCTCCCACAGTAGATCTATGTACATCTG	CAAGAGATGGGTCGGCTGTCCGGCCGCCATCGCGGGTAAGCCT
AGCTCCCACAGTAGATCTATGTACATCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012830.1\|WP_054593121.1\|25692_26238_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_019689605.1\|15557_15725_-\|metallothionein	unknown	unknown	gnl\|CDD\|366903
NZ_CP012830.1\|WP_054593120.1\|24991_25696_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054593123.1\|27154_27862_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054593118.1\|23323_24007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054593114.1\|17529_18240_-\|phospholipase	unknown	unknown	gnl\|CDD\|223477
NZ_CP012830.1\|WP_054593112.1\|15962_16775_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054593117.1\|22083_23322_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379050
NZ_CP012830.1\|WP_054593122.1\|26234_27158_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054593108.1\|11190_12147_+\|nucleoside-specific-channel-forming-protein-Tsx	unknown	unknown	gnl\|CDD\|237911
NZ_CP012830.1\|WP_054593113.1\|16941_17520_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183232
NZ_CP012830.1\|WP_081013678.1\|14385_14559_-\|DUF1427-family-protein	unknown	unknown	gnl\|CDD\|369277
NZ_CP012830.1\|WP_054593115.1\|19236_19452_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054593116.1\|19510_20884_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|377306
NZ_CP012830.1\|WP_146016096.1\|21630_21984_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054593119.1\|24035_25019_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054593107.1\|9888_10923_-\|selenide,-water-dikinase-SelD	unknown	unknown	gnl\|CDD\|234870
NZ_CP012830.1\|WP_054593109.1\|12189_13224_+\|purine-nucleoside-permease	unknown	unknown	gnl\|CDD\|377669
NZ_CP012830.1\|WP_054593110.1\|13398_14355_-\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223677
NZ_CP012830.1\|WP_054593111.1\|14652_15441_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379

Protein	Function_ID	Function_description	E-value
NZ_CP012830.1\|WP_054593117.1\|22083_23322_+\|AAA-family-ATPase	gnl\|CDD\|379050	pfam13175, AAA_15, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	2.18477e-18
NZ_CP012830.1\|WP_054593113.1\|16941_17520_+\|hypothetical-protein	gnl\|CDD\|183232	PRK11615, PRK11615, hypothetical protein; Provisional.	2.76564e-07
NZ_CP012830.1\|WP_081013678.1\|14385_14559_-\|DUF1427-family-protein	gnl\|CDD\|369277	pfam07235, DUF1427, Protein of unknown function (DUF1427). This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.	1.11754e-18
NZ_CP012830.1\|WP_054593116.1\|19510_20884_+\|ATP-binding-protein	gnl\|CDD\|377306	pfam04326, AlbA_2, Putative DNA-binding domain. This family belongs to the AlbA clan of DNA-binding domains.	8.72185e-07
NZ_CP012830.1\|WP_054593114.1\|17529_18240_-\|phospholipase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	1.0814e-36
NZ_CP012830.1\|WP_054593107.1\|9888_10923_-\|selenide,-water-dikinase-SelD	gnl\|CDD\|234870	PRK00943, PRK00943, selenide, water dikinase SelD.	0
NZ_CP012830.1\|WP_019689605.1\|15557_15725_-\|metallothionein	gnl\|CDD\|366903	pfam02069, Metallothio_Pro, Prokaryotic metallothionein.	0.00449254
NZ_CP012830.1\|WP_054593109.1\|12189_13224_+\|purine-nucleoside-permease	gnl\|CDD\|377669	pfam06516, NUP, Purine nucleoside permease (NUP). This family consists of several purine nucleoside permease from both bacteria and fungi.	2.66857e-174
NZ_CP012830.1\|WP_054593110.1\|13398_14355_-\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|223677	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only].	6.78497e-62
NZ_CP012830.1\|WP_054593111.1\|14652_15441_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.52871e-35
NZ_CP012830.1\|WP_054593108.1\|11190_12147_+\|nucleoside-specific-channel-forming-protein-Tsx	gnl\|CDD\|237911	PRK15106, PRK15106, nucleoside-specific channel-forming protein Tsx; Provisional.	4.16755e-167

>NZ_CP012830.1|WP_054593114.1|17529_18240_-|phospholipase
MFRFFAVLMLMVSSVAHAALNDDLPLPYLEQSNPDSRNQPLVIFLHGSGSNEEDLFDIKDELPVQYTYLSVRAPQAVEADSYQWFRKKGEGAYDGDTDDLNSSSALIVDFVAQAAKKYHTEADKVFLVGFSQGAIMSYEVALRHPETVRGIAALSGKVLPVLRSQLKADKALEPLAIFIGHGTADLKLPYSDGSEANSLLQGIALTPEFHAYPGVGHTISAAEMQDLNAWLLRINQ
>NZ_CP012830.1|WP_054593113.1|16941_17520_+|hypothetical-protein
MSLSKKAVVLLLTAVTSFAAVSVYAAKQPAAKTAPAQKISALGGKFAFALPQGFIANPLPGGDAAKGTAGATGTMYTNQASKTVLIIAENTLPNGLNVKDNDTVFLDESVSGFATQQRDALPDFNKQSEKSLTIKGLGLRQIDSTATQGGGLTLDTSLLAGSGTRMMLIQIISRADDKAGHAALVKQILGDK
>NZ_CP012830.1|WP_054593112.1|15962_16775_+|hypothetical-protein
MLLLKLSLIPGFLLLISLAGKRWGPSVAGWLSGLPVVVGPILFFLAVEQGPVFVTQAATAALSAMFAMIAFCVVYAQAAQKFNWPAALSIALLSWATAAVVLSLIPASLVFSTLAAITALLAAPYLFPHVQPLVSGPAPKSDKLLLRMLAGALLTLAVTLLASTVGERWSGLLAVFPVLGSVMAVFSQQTRGPAFTAALLRATATGMYSFAAFCLTLALALPRWGWSAFVLGVAVSLGMLLITKRLAAPSHGNARQMPEVTIEPSDPQPR
>NZ_CP012830.1|WP_019689605.1|15557_15725_-|metallothionein
MKATTCACPNCNCKLGEHSIVRHGKHYCCEGCAKHHEHGEACTSAGCQCAKGAHG
>NZ_CP012830.1|WP_054593111.1|14652_15441_-|helix-turn-helix-transcriptional-regulator
MALAAPPDLSDTDVPVQPLARTYPRGLYIEPHEHVWGQLLYAMSGVMWVETPDEALVVPPQRAVWLPPGVVHGIRVVSDLQMRNIYLRPALAATLDSSVQVIEVGGLLRELILGLVEQGDSGPTDYYEALVGLALLELKRAKRSLLKIPMPDNAERRLINLCQAVMAAPSLDIPFEQHAENAGASVRTLARLFKDGLGMGFAEWRRQVQLAIAVAELIQGVPVSTIARELGYSPSSFSDMFRRELGVPPSQFAREGDFSSAP
>NZ_CP012830.1|WP_081013678.1|14385_14559_-|DUF1427-family-protein
MNYLISVAIGLGVGLLYGALDFRSPAPPAIALVGLLGMLAGEQLWPMGRQLVAGWIS
>NZ_CP012830.1|WP_054593110.1|13398_14355_-|zinc-binding-alcohol-dehydrogenase-family-protein
MKALQFDKTGDLAALRYVEVPTPVPGANEVLVQIKAAGLNPSDVKNVLGRFPYTTLPRIPGRDFAGVVIEGPQALIGQEVWGTGRELGFFADGSHAQYVKLPAKGVALKPTHLSFAQAASLGVPYTTAWDALERSLVTAQTRLLVIGGGAVGSAALALGKIRGAEVLAAARRPEQVKALQAQGFNTIQLETPEALGAQVNAIFTGGADVIFDTTGFWLPASVAALATFGRIAIIAAPVDGQVQLPALALYRRGGSVVGINSLLYGVEACAAMLEQFGRFFDDGLLPLPDGLLESPLAEGLERYAEVNQGGGDKVILLP
>NZ_CP012830.1|WP_054593109.1|12189_13224_+|purine-nucleoside-permease
MHTVTRLSLSASLACSALLSSSVWAAEAPITPKVMLISMFAPEAQTWIDRLELKQEIRVPGLSAEYPSIRCNTQQVCLMVTGMGQTNAAASTLALALSPKFDLRKSYFLIAGIAGINPHHGTIGTAAWAHYLVEFGTQWELDSRDAPKEWPTGYIGINTKGPNEKPPLDYKTEVFELNPKLQAKAFALSAKVVLSESQESAAWRVKYPYAPANQPPVVTQCDTLAGNTWFSGTRLSERAEVWTRLLTDNKGVYCTTQQEDNSTYEALLRASREGLVDIQRLAVVRAGSDFDRPYPGYSEVDNLLKYADQGGFVPALENLFRTGNPLVQEILKNWSAWEKGVPEA
>NZ_CP012830.1|WP_054593108.1|11190_12147_+|nucleoside-specific-channel-forming-protein-Tsx
MHATSRRTASCPTVAVSLLLSAVTGLLSCAALAQEKTVDESAQGETLSAEASPPKKGAYLSDWFNQDLTLIGSKDISFGPQPADDVYLEYEYFGRKGPFELYGYIDAPKILGIGNSHDKGAWDHGSPLFMEHEPRISIDYLAGRSLAVGPFKEWYVAFDWIYDHGSSTANRANTLYSGLGTDIDTHSRVNLSANFYGRYQWENYGASNEYSWDGYRAQLKYIVPIDRFSNGASLTYIGFTNFDFGSDLHKDNPARTANATVATNVLLYSFTHLRFTLVGRYFHNGGNWEDGSELNFGEGNFRARSDGWGYYAGVGYQF
>NZ_CP012830.1|WP_054593107.1|9888_10923_-|selenide,-water-dikinase-SelD
MSEPIRLTQYSHGAGCGCKISPQVLEVILAGSGAQNLDPKLWVGNASRDDAAVYAIDDERGVVSTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGDPLMAIAILGWPVNVLAPEIAREVIRGGRSICDEAGIPLAGGHSIDAPEPIFGLAVTGLVQKRHMKRNDTATAGCLLYLTKPLGIGILTTAEKKGKLRASDVGLARDWMCTLNKPGSRFGKLDGVTAMTDVTGFGLLGHLVEMADGSGVTARIDYDRVPRLPGVEYYLDQGCVPGGTLRNFDSYANKVGRIQELHKRVLCDPQTSGGLLVAVTPEGNEQFLAVAAELGLNLAPIGELVERQSNAVEVI
>NZ_CP012830.1|WP_054593115.1|19236_19452_+|hypothetical-protein
MASEYSLADVLERIYQNQLALEAAVMEVTLWAERQNAAEVGANVRGTLCTIGENAGYIKQGLARLKSLDAG
>NZ_CP012830.1|WP_054593116.1|19510_20884_+|ATP-binding-protein
MDLDEFLQAPRESLNIELKAWIDPSTPEGKAKIVKAAIALRNFDGGYFGIGISNEGIPLTSEAPENLDEQFHQDTIQALITKHSSEPFEVTVQFGNFQGIRFPFIVIPSGVRTPVAAKCRLQDLNSQDLVKQDTVYVRTLRANHTPSTAAALFSDWPQIMNVCFDNREADIGNFVRRHLTGLDIPSLLAHFGSQPIESRTAVIDAFMSKCRQRFLDAPKADGARDLGNGRFEVAFVINSKQEREAVRADTNFLSSFIYANPHHSGWPLWVDTSSFQQENDRPRTRANGWEALIEDYVGSFIRPRLDYWRVEPPGSFYHIRVLWEDAIAISKGDAPNLFFGMDVAIINVAEAISVAISFAKSMGFEGDKTNLEFAFRWSGLENRNMTSYDTRRYISPGKVCGDNEITSHINIPLDLAPSSIPSLVPDIVGELFSAFNGAAFSKNIIEEIASEQLQKKY
>NZ_CP012830.1|WP_146016096.1|21630_21984_-|hypothetical-protein
MLPKSSLCSEKCSGNSLIPLPPTGLASFFFANPDVVQTNLQPRRAVGLCRGSAIAQNERFFSEMQRGCTASLQAVTKVEKLEPPVSLGEKLKTVVFGGFSKTRTIFFGEDWLGTGRG
>NZ_CP012830.1|WP_054593117.1|22083_23322_+|AAA-family-ATPase
MIDTIEISNYKSIEKVKLELGRVNLFIGENGAGKSNLLEAISLMSAAASNKLDNEFLLSRGIRVTAPQLMRSQFHKNTDLLPIKIDVLIKDFEPITFEINNDNGHYSSWQSNLKKNGKNASEYTSKKFENYIREPDADLDKILQQVTQFLEQARAIKSKLESENKKSILNPFKDTDNTISKIIINYQNEFRELPKELEDFVIYSPEQTALRTFDQEGQIEPLGVKGEGLLKLLSVLSEIDNGKAFNDISERLKVLGWFESLRIAKDSSMSPVGMDISDNFTSESGKVFDHRSANEGFLFLIFYYALLSTNLTPSFFAIDNIDTSLNPKLCVELMKQLAGLARKNNKQVLLTTHNPAVLDGMNLEDDDQRLFVVSRNLTGQTRIKRIKKPKNVELKLSEMFMRGVLGGLPKGF
>NZ_CP012830.1|WP_054593118.1|23323_24007_+|hypothetical-protein
MLSFALITEGITDQIVIERLVSIILECESDFEVEINRLQPLCDENDRSKQAENSFGGFENLLAYCADPSKMADALEFNQYLIIQVDTDRCEHPGFGLALNKGGREVSTEELINDVKSSLIEKITPEFYNEHQNRIIFGVSVHSTECWLLPFFSNKRVDQDRRLSCETHLNRALNLSNTAYAKDGPGYNKLCKSLKKPSDIRRAAKLNESLNDFIATLDSFQPFNFEL
>NZ_CP012830.1|WP_054593119.1|24035_25019_-|hypothetical-protein
MEDAIRRAVERQFPELTGGYHLPRFARVVAVADAPSGAGICDDFRPRYAVDIEVLGPDGEADPQLPQLAGVPLPLPTGGEEMGIYAFPEEGTQVVVCFAYGLPNKPYIQTILPHGLSMPKVPKGDQVWQHSEAAQQRVDADGNWLRQTDGKITDKAIERDVEALDNREQFQSHTRTVDDHSTESVGGIKKIEALGALKLLSGGSASLAAVDDLHQATGRDFNLVVGNTYNATVGGDMREKIQGLRTSVAGISQCLQAPKTWVGSESINVLKVLCELLDLVAQMNGQIAGHVHASSPPPSNASEFTIAVGTAQLLSGGLKSITSLDVR
>NZ_CP012830.1|WP_054593120.1|24991_25696_-|hypothetical-protein
MKLHKVLAINGAPFTLVKEDVRLDAASPGRATFTIKSAVPVKGLVTLDIGYNDGTLQRHFIGYVERCTAANAIEQLLFCRELAAVLANPLPLNLRHVDLRAVLAQVSEQTGLRFRVPDRPYASVKAPFFYSLAAGFQAMDSLARVFSIPDFTWHQLGNGEVFAGSWADSFFGARAPLQIPTELFDGYQGNQSAMIAALPGLRPGATINHGERITSVALANDQMAIRWKTQSAAL
>NZ_CP012830.1|WP_054593121.1|25692_26238_-|hypothetical-protein
MTLLLDGHKVQGKNLKVTANLRIESGDMSGQTSNTDKAHKGFKPKTLTISLMIPFADKSQLIDLMRLAEATAGGGQLHLYRVVNDSAEAFGVRQVEFSDGISAREDDSLRAWLVQFTLSERQSNPEKVEGRRAGNAVNAQGGPGSAVGGDGKDSTTDDLALSGFEKVLGRVDKWLGGSEQK
>NZ_CP012830.1|WP_054593122.1|26234_27158_-|hypothetical-protein
MTWAPVTMRWPEQATQWMGDLSAAKDLASGELASTALRLTGLDGLAGTNPGPVGDAAKGAIAAGRAALAEQLGQAPACLVVTPFQSGIGQGSGYQRFLSAPNLLEHLAKKLEDVTDTGRPAGPQYALSILFLSTRLEQLASSLSRFNALLPIPDLVRTERRAQHLVKLETEKWEIPGAGPLPRWQALPLERCTVVKAAKQSMAGQLAVLESYAADSSPLGDLAALASRKAAQQKGRDQQLTDLKSQLAGGNPDTSMRARLIGPGNTSELRRELLAGDAPGHEWVLCAGIMLVGSKEALSFVQELVGL
>NZ_CP012830.1|WP_054593123.1|27154_27862_-|hypothetical-protein
MTEKIVYQASPQGLYIGPVLADPCPIEEGVFLVPAGCVEVAPPDAPEHKVAHWNGKKWQLLDYFEKVTVYSITTGESLVLDGMRPMPSGYTLKQPGPNQIWKGGKWVDDVEVILASLYQKKLAAIGADCSSYIQGGFSSQALGWSFRYASELEDQLNLTGLILAQIDADYPCYDEHQVKAFRPHTAEQLQEVGKDLAKFRQVALQHAESLKQELAKALEKKDIKAMQTITWAPSA

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Crispr_ID: NZ_CP012830_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012830_2

964230-964327

Orphan

Consensus_repeat	Method
GAGATTGGTCGGCTGTCAGGCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012830_2

>merge|NZ_CP012830|2|964230-964327|CRISPRCasFinder
GAGATTGGTCGGCTGTCAGGCCGCCTTCGCAGGCAAGCCAGCTCCCACAGTTTTGATTGGTGTACATCTGCGGGAGATGGGTCGGCTGTCAGGCCGCC

>NZ_CP012830|2|2|964230-964327|CRISPRCasFinder
GAGATTGGTCGGCTGTCAGGCCGCC	TTCGCAGGCAAGCCAGCTCCCACAGTTTTGATTGGTGTACATCTGCGG
GAGATGGGTCGGCTGTCAGGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012830.1\|WP_054593866.1\|962642_962942_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054593864.1\|958141_960658_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP012830.1\|WP_102667319.1\|957094_958117_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225132
NZ_CP012830.1\|WP_054593869.1\|964755_968652_-\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|235394
NZ_CP012830.1\|WP_054593868.1\|964438_964750_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225860
NZ_CP012830.1\|WP_054593876.1\|976802_977864_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|275201
NZ_CP012830.1\|WP_054593872.1\|971316_972006_-\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|234622
NZ_CP012830.1\|WP_054593867.1\|963132_963522_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054593874.1\|973971_974826_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|182787
NZ_CP012830.1\|WP_054593870.1\|968938_970399_+\|membrane-bound-lytic-murein-transglycosylase-MltF	unknown	unknown	gnl\|CDD\|236778
NZ_CP012830.1\|WP_054593860.1\|954305_954809_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|225577
NZ_CP012830.1\|WP_054593871.1\|970523_971267_-\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|235380
NZ_CP012830.1\|WP_019691997.1\|973102_973792_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP012830.1\|WP_054593873.1\|972207_973110_-\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP012830.1\|WP_054593858.1\|952966_953566_-\|CoA-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
NZ_CP012830.1\|WP_054593859.1\|953714_954266_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239948
NZ_CP012830.1\|WP_054593865.1\|960686_962402_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273920
NZ_CP012830.1\|WP_054593861.1\|955244_955976_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP012830.1\|WP_054593875.1\|974831_976631_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP012830.1\|WP_054593862.1\|956007_957114_+\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|238434

Protein	Function_ID	Function_description	E-value
NZ_CP012830.1\|WP_054593869.1\|964755_968652_-\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|235394	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional.	0
NZ_CP012830.1\|WP_054593864.1\|958141_960658_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP012830.1\|WP_102667319.1\|957094_958117_+\|SIS-domain-containing-protein	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	1.35163e-100
NZ_CP012830.1\|WP_054593868.1\|964438_964750_-\|hypothetical-protein	gnl\|CDD\|225860	COG3323, COG3323, Uncharacterized protein conserved in bacteria [Function unknown].	3.90451e-46
NZ_CP012830.1\|WP_054593876.1\|976802_977864_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	3.73918e-143
NZ_CP012830.1\|WP_054593872.1\|971316_972006_-\|DNA-repair-protein-RecO	gnl\|CDD\|234622	PRK00085, recO, DNA repair protein RecO; Reviewed.	6.2679e-62
NZ_CP012830.1\|WP_054593874.1\|973971_974826_-\|signal-peptidase-I	gnl\|CDD\|182787	PRK10861, PRK10861, signal peptidase I.	1.96176e-86
NZ_CP012830.1\|WP_054593870.1\|968938_970399_+\|membrane-bound-lytic-murein-transglycosylase-MltF	gnl\|CDD\|236778	PRK10859, PRK10859, membrane-bound lytic murein transglycosylase MltF.	0
NZ_CP012830.1\|WP_054593860.1\|954305_954809_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.94335e-36
NZ_CP012830.1\|WP_054593871.1\|970523_971267_-\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|235380	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.	6.46683e-147
NZ_CP012830.1\|WP_019691997.1\|973102_973792_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	5.13063e-117
NZ_CP012830.1\|WP_054593873.1\|972207_973110_-\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	2.75425e-175
NZ_CP012830.1\|WP_054593858.1\|952966_953566_-\|CoA-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	1.44428e-58
NZ_CP012830.1\|WP_054593859.1\|953714_954266_+\|NUDIX-hydrolase	gnl\|CDD\|239948	cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.16384e-82
NZ_CP012830.1\|WP_054593862.1\|956007_957114_+\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	1.25214e-153
NZ_CP012830.1\|WP_054593861.1\|955244_955976_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	4.15814e-73
NZ_CP012830.1\|WP_054593875.1\|974831_976631_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP012830.1\|WP_054593865.1\|960686_962402_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273920	TIGR01998, N-acetylglucosamine_and_glucose_PTS, PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.84192e-174

>NZ_CP012830.1|WP_054593867.1|963132_963522_-|hypothetical-protein
MIKETPNPPEHDDVSPYESLDSKKLHDAAHRALDHYLKPTLAKLRFSDLRSDRLFSVSPDVGLESLLANASEDLASVKVMAADLAFEIEGSRRSVALAICRMVDGALLLVDKALDDYNPSESDQFYVKE
>NZ_CP012830.1|WP_054593866.1|962642_962942_-|hypothetical-protein
MTSAVKAAPVITTVIDPKGNPISNGGTTNGNEVIVKGMSEPGKKVEVYDNNSLHLTLFADNTGRWVAQLTKLQVGAHVIKAKSDNQESAIWSFSVIAPK
>NZ_CP012830.1|WP_054593865.1|960686_962402_+|PTS-transporter-subunit-EIIC
MYQLFIEGLQRLGRALMLPIAILPIAGLLLRLGDTDLLNIAIIHDAGQVIFANLALIFAIGIAVGFARDNNGTAGLAGAIGYLVMVSTLKVLDASINMGMLAGIISGLMAGALYNRFKDIKLPEYLAFFGGRRFVPIATGFSAVGLGVIFGLIWPPIQHGINSFGQLLLESGSIGAFVFGVFNRLLIVTGLHHILNNMAWFIFGSFTDPTTGAIVTGDLARYFAGDPKGGQFMTGMFPMMIFGLPAACLAMYRNALPERRKVMGGIFLSMALTSFLTGVTEPIEFAFMFLAPLLYLLHVLLTGMAMAITNALNIHLGFTFSGGAIDMALGWGKSTNGWLVFPVGLAYAVIYYVVFDFCIRRFNLKTPGREGVVVGEKVVLSENQRAGAYIQALGGAENLITVGACTTRLRLEMVDRNKASDSELKALGAMAVVRPGKGGSLQVVVGPLADSIADEIRQAMPTAGSALVAAVVVTEEAPKAAPVETPEAQKWLNAVGGSDNVLQLDCVAMTRIRLQLADGKALSECQLKDLGCQGVSALDGGVWHLLIGDKALSLSEALEGLVNRSEVSAKV
>NZ_CP012830.1|WP_054593864.1|958141_960658_+|phosphoenolpyruvate--protein-phosphotransferase
MHNNNKDLTLSAPLSGPVLTLAKVPDPVFASGAMGDGIAIDPLNNTLHAPCAGVVVHVARTGHAVTLRADNGAELLLHLGLDTVELQGEGFSMLVKEGTRVSNGQALLRFDLDQVAQGCKSLVSLLVLTNSEDFQVLPITLKSVKVGEPLLHIVPRTTHSAQVEADSSGAEVHGHIRIIHRGGLHARPAALIRQTAHLFNSKSQLHFAGKSASCDSLIGLMGLGIGEQDEVQVSCKGADAKAALQALLNALSTAVNDDSHAAAPTPIAQRTRTAEAGVLNGVCAAPGLVGGPLFQLAAIPLPEDTGKHNAEEQLQALDRALEQVRSEIRETLSHAKKHKHTEEEQIFAAHLALLEDPALLEAAIQSIDQGSAATHAWSQSIEAQCEVLQQLGNPLLAERANDLRDLRQRVLRALLGQDWHYDVPAGAIVAAHELTPSDLLQLSQQGVAGLCMAEGGATSHVAILARGKGLPCLVALSASLLQQPQGQSVVLDADGGRLELTPDSQRLEQVAQAQREHLQRRERQQAQAHTPAHTRDGLRIEVAANVASSNEAADALKGGADGVGLLRTEFLFVDRQTAPDEQEQRQAYQAVLDAMGDKSVIIRTIDVGGDKQLDYLPLPAEANPVLGLRGIRMAQVRPELLDQQLRALLQVSPLQRCRILLPMVTEVDELLYIRQRLDALCAELALTQRLELGVMIEVPAAALLAEQLAEHADFLSIGTNDLSQYTLAMDRDHAGLAARVDALHPALLRLIAQTCIGAAKHQRWVGVCGALASDPLATPVLIGLGISELSVSPPQVGEIKERVRQLDAADCRRFSATLLNLSSATAVRHACHQHWPLS
>NZ_CP012830.1|WP_102667319.1|957094_958117_+|SIS-domain-containing-protein
MTSKMLEEALSSYKAVDAQLQQLDPLMIEIAGRLNRQPPQVAMTVARGSSDHAASYFAYLTMQHVGIPVASLPMSVVTMQQAPLKVSGQAVFAFSQSGQSPDLVNSLRLLRKRGALSISMVNAENSPLEAACEFSLPLCAGTESSVAATKSFIATLSASARLIAYWKQDPELLQAGLALPEGLRDAATQDWSLAVDVLRDCQRLMVIGRGAGFAIAQEAALKLKETSAIQAEAFSSAEVKHGPMALIDDNYPLLVFAPRGAEQAGLLSLAAEMRQRGARVLLAAPDDVSERDLTLSRAEHPALDPILAIQSFYVMAAGLAVARGMDPDQPRHLSKVTRTH
>NZ_CP012830.1|WP_054593862.1|956007_957114_+|N-acetylglucosamine-6-phosphate-deacetylase
MSEDNILTAQGWIRGRLIHEHGKIVRIEGQPCDPADNDLPYLLPGFIDLHVHGGGGKDIMEGTPAFDTITKTHVRFGTTSLLATTMTAPPEEISRVLAEVGEFCEQRPKGCARVLGVHLEGPYINPGKLGAQPNFAHTALMAEVEAYLALAPIRVITIAPEIAGHDKLIRALSDRGIRMQIGHTLGSYEEGVAALEAGASSFTHLYNAMSPLHHREPGIVGAALAHAKYAELIPDLLHVHPGAIRVALRSIPCLYCVTDSTAAAGMPDGEYKLGSHTVTKCLGGVRLPDGTLAGSTLTMDQALRNLVKIGLPLAEASQRLSQFPADYLGIQERGRLQPGAWADCVRLDRSLTLTAVMVEGEDIDFKNA
>NZ_CP012830.1|WP_054593861.1|955244_955976_+|GntR-family-transcriptional-regulator
MNHILALRPDDTQPTPLYLQLARNLEAAIHAGQWKAEQALPSERNLSEMLNISRVTARKALEVLLEQGLIRRSQGSGTFITPRLEQPLSRLSGFSEMLRLKGFVPSSQWLEREITQPTHEELIRLALSPYDKVARLKRLRKADDTVMAIEMSTLPASIIAQPQAVGDSLYEYLDGIGKPVVRALQHIQAINASDEFAALVGIAPGTAMLLMTRVGYLEDNTPIEVTDTYCRNDYYDFVAELRR
>NZ_CP012830.1|WP_054593860.1|954305_954809_+|L,D-transpeptidase-family-protein
MRWLLAAFCLSFVMVSHAATTETLDGKIIEKVLVLKSAHQLQLINDGKPLRTYRISLGKNPKGPKLMEGDRRTPEGLYWLDWRKVSDRFNLAMHISYPNISDSVRSRREGVQPGGMIMIHGTPDTEENPEELFHTLDWTDGCIGMRNVDMREVWGLVKDGTMIEIRP
>NZ_CP012830.1|WP_054593859.1|953714_954266_+|NUDIX-hydrolase
MKFCSQCGNPVTQRIPEGDSRLRYVCDQCQTIHYQNPNIVAGCLPIWGTQVLLCRRAIEPRRGYWTLPAGFMENGETIEQAAIRETAEEACARVRNLNIYTLIDVPHISQVHVFFRAELTDLDFAAGEESLEVRLFDEADIPWSELAFRTVGRTLECFFADRRVEHFPVRSESIPPLAQPAII
>NZ_CP012830.1|WP_054593858.1|952966_953566_-|CoA-pyrophosphatase
MLDELLHRVSNHTPRTLETDLRFPEAAVLVPITRSDEPELVLTLRASGLSTHGGEVAFPGGRRDPEDPDLIFTALREAEEEIGLPPGLVEVIGPLSPLISLHGIKVTPYVGVIPDFVEYRANDAEIAAVFSVPLEFFRKDPREHTHRIDYQGRSWYVPSYRFGEYKIWGLTAIMIVELINLLYDAQISLHQPPKNFINI
>NZ_CP012830.1|WP_054593868.1|964438_964750_-|hypothetical-protein
MYKLSFFVPQSHVEVVKGAVFAAGGGRIGAYDHCSWQVLGLGQFRPLDGSQPFIGQAGLVEQVEEWKVELVVSDELIGVVVAALKQSHPYETPAYEVWRLEDF
>NZ_CP012830.1|WP_054593869.1|964755_968652_-|phosphoribosylformylglycinamidine-synthase
MLILRGAPALSAFRHSKLLEQLSQKVPAVSGLYAEFAHFAEVTGVLTGDEQQVLARLLKYGPSVPVQEPTGRLFLVLPRFGTISPWSSKASDIARNCGLAKIQRLERGIAFYVTGEFTDAQAQLIADGLHDRMTQIVLENLEQAAGLFSHSEPKPLTAIDVLGGGRAALETANVELGLALAEDEIDYLVNAFIGLKRNPHDIELMMFAQANSEHCRHKIFNASWDIDGESQEKSLFGMIKNTYVMHSEGVLSAYKDNASVIVGSVAGRFFPDPETRQYGAVQEPVHILMKVETHNHPTAIAPFPGASTGSGGEIRDEGATGRGAKPKAGLTGFTVSNLQIPGFEQPWEVPYGKPERIVTALDIMIEGPLGGAAFNNEFGRPALTGYFRTFEQSITTPRGDEVRGYHKPIMLAGGMGNIREEHVKKGEILVGSKLIVLGGPAMLIGLGGGAASSMATGTSSADLDFASVQRENPEMERRCQEVIDRCWQLGERNPISFIHDVGAGGLSNAFPELVNDGDRGGRFELRNIPNDEPGMAPHEIWSNESQERYVLAVGPADFERFKAICERERCPFAVVGEATAEPQLTVTDSHFGNSPVDMPLEVLLGKAPRMHRSAVRETELGDDFDPSTLAIADCVERVLHHPAVASKSFLITIGDRTITGLVARDQMVGPWQVPVADVAVTATSFDVYTGEAMAMGERTPLALLDAPASGRMAIGETLTNIAASRIGKISDIKLSANWMSAAGHPGEDARLYDTVKAVGMELCPELGITIPVGKDSMSMATRWNDEGVDKTVTSPMSLIVTGFAPVTDIRQTLTPQLRMDKGTTDLILIDLGRGQNRMGASILAQVHGKLGKQAPDVDDAEDLKAFFAVIQGLNADGHLLAYHDRSDGGLLTSVVEMAFAGHCGLSLNLDGLAETSADIAAILFNEELGAVIQVRQDSTPDILAQFSAAGLGDCVSVIGQPMNNGEISITFNGDTVFEGQRRLLQRQWAETSYQIQRLRDNADCAEQEFDVLLEEDNPGLSVKLSYDVNQDVAAPYIKKGIRPQVAVLREQGVNGQVEMAAAFDRAGFNAIDVHMSDILAGRVDLNEFKGLVACGGFSYGDVLGAGEGWAKSALFNSRARDAFQGFFERTDSFTLGVCNGCQMMSNLHELIPGSEFWPHFVRNRSEQFEARVAMVQVQESNSIFLQGMAGSRMPIAIAHGEGHAEFASEEALLQADLSGCVAMRFVDNHGKVTERYPANPNGSPRGITGLTSRDGRVTIMMPHPERVFRAVQNSWRSEEWNEDAPWMRMFRNARVWVN
>NZ_CP012830.1|WP_054593870.1|968938_970399_+|membrane-bound-lytic-murein-transglycosylase-MltF
MFSPTALRPRFAKWLIATGLFLMLSGCVDKPNTLERVKEDGVLRVVTRNSPATYFQDRNGETGFEYELVKRFADDLGVKLKIETADNLDDLYGQLGKPGGPVLAAAGLVGSDKRKQQVRFSHSYLEVTPQIIYRNGQSRPTSAADLVGKTIMVLKGSTHADQLAALKKKYPGIEYEESDAVEVVDLLRMVDEGQIDLTLVDSNEVAMNQVYFTNARVAFDLGDASNQSWAVAAGDDNSLLNEINDFLDKAQKNGTLQRLKDRYYGHVDVLGYMGAYTFAEHLQQRLPKYEKHFKASAKEEKVDWRLLAAIGYQESLWQPAVTSKTGVRGLMMLTQNTAQAMGVSNRLDAKQSIMGGAKYLAYTKDQLDDSIQEPDRTWFALAAYNVGSGHLDDARKLAAKEGLNPDKWLDVKKILPRLSQKQWYSKTRYGYARGGEPVHFVANIRRYYDILTWVTQPQLEGDQVTQGNLHVPGIDKTKPPEENPPL
>NZ_CP012830.1|WP_054593871.1|970523_971267_-|pyridoxine-5'-phosphate-synthase
MTTSNRILLGVNIDHVATLRQARGTRYPDPVKAALDAEEAGADGITVHLREDRRHIQERDVLLLKDVLQTRMNFEMGVTEEMMAFAERIRPAHICLVPETRQELTTEGGLDVAGQEARIKAAVDRLAKIGCEVSLFIDADERQIEASKRVGAPAIELHTGRYADAETPTAVAEELKRVADGVAFGLTQGLIVNAGHGLHYHNVEAVAAIKGINELNIGHALVAHALFVGFKSAVSEMKALILAAAKA
>NZ_CP012830.1|WP_054593872.1|971316_972006_-|DNA-repair-protein-RecO
MSTTAPTGQPAYVLHSRAYRENSALVDFLTPQGRLRAVLRSARGKAGTLARPFVPLEVEFRGRGELKNVGRMESAGVSTWLNGEALFSGLYLNELLIRLLPSEDPHPAVFDHYAATLLALAEGRPLEPLLRSFEWRLLDDLGYGFALNADIHGEPIAPDGLYRLQVDAGLERVYLLQPGLFNGTELLAMADADWSAPGALSAAKRLMRQALAVHLGGRPLVSRELFRKP
>NZ_CP012830.1|WP_054593873.1|972207_973110_-|GTPase-Era
MTDSTATRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGDVQAIYVDTPGMHKGGEKALNRYMNKTASAALKDVDVVIFVVDRTKWTEEDQMVLERVQYVTGPLIVALNKTDRIEDKAELMPHLSWLQEQLPNAQIIPISAQHGHNLDALERVIAGHLPENDHFFPEDQITDRSSRFLAAELVREKIMRQMGAELPYQITVEIEEFKQQGKTLHIHALILVERDGQKKIIIGDKGERIKRIGTEARKDMELLFDSKIMLNLWVKVKGGWSDDERALRSLGYGDL
>NZ_CP012830.1|WP_019691997.1|973102_973792_-|ribonuclease-III
MSVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFDRFPLAREGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAIYLDAGMDMARERVLAWLTSEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECEITLLNEKSRGQGVSRRIAEQVAAAAALIALGVENGHD
>NZ_CP012830.1|WP_054593874.1|973971_974826_-|signal-peptidase-I
MSLNFPLLLVIAVFVCGLLGLLDLIFLAPRRRAAITSYQGSVTEPDMMVVEKLNKEPMLVEYGKSFFPVLFIVLVLRSFLVEPFQIPSGSMKPTLDVGDFILVNKFSYGIRLPVLDTKVIQVGDPQRGDVMVFRYPSDPNVNYIKRVVGLPGDQIRYTADKRLFVNGESIAEQLVGSEPGTLGSAELYKEKLGVAEHLIRKEMSRYRATPDHQWTVPAGHYFMMGDNRDNSNDSRYWDDPTIPKDLLGMVPDKNIVGKAFAVWMSWPEPKLSHLPNFSRVGLIK
>NZ_CP012830.1|WP_054593875.1|974831_976631_-|elongation-factor-4
MSDLSHIRNFSIIAHIDHGKSTLADRFIQMCGGLAEREMEAQVLDSMDLERERGITIKAHSVTLYYTARDGIKYQLNFIDTPGHVDFTYEVSRSLAACEGALLVVDAGQGVEAQSVANCYTAIEQGLEVMPVLNKIDLPQADPDRVKEEIEKIIGIDATDAVECSAKTGLGVDEVLERLVHTIPAPTGNIEDPLQALIIDSWFDNYLGVVSLVRVRHGRVKKGDKILVKSTGKIHLVDSVGVFNPKHTATVDLKAGEVGFIIAGIKDIHGAPVGDTLTLSSTPDVDVLPGFKRIQPQVYAGLFPVSSDDFEDFREALQKLTLNDSSLQYTPESSDALGFGFRCGFLGMLHMEIIQERLEREYDLDLITTAPTVIFELLLKTGETIYVDNPSKLPDLSSIEDMREPIVRANILVPQEHLGNVITLCIEKRGIQHDMLFLGSQVQVTYDLPMNEVVLDFFDRLKSTSRGYASLDYHFDRYQSANLVKLDVLINGEKVDALALIVHRDNAHYKGRALTEKMKELIPRQMFDVAIQAAIGGQIVARTTVKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKQVGNVEIPQEAFLAVLRLDS
>NZ_CP012830.1|WP_054593876.1|976802_977864_-|LPS-export-ABC-transporter-permease-LptG
MVKLDRYIGGSVFMAILAVLGIILGLATLFAFIDEMSDVTDTYTLTDVLSYVALTAPRRVYDMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLAGVLVGEYVAPAAENVAQANRSLAQGIGDAQSAKHGMWHRQGDEFIHINSVQPDGILYGVTRYRFDRERHMLTSSFSKRAQFETDHWQLNDVTTTVFHDGSTEVVTAPQERWEVPLSPQLLNTVIMAPESLSISGLWGYIHYLADQGLNNGRYWLAFWVKVLQPLVTVALVLMAISFIFGPLRSVTLGQRVFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPAGICGVAGLWMLRRAG

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Crispr_ID: NZ_CP012830_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012830_3

3306356-3306465

Orphan

Consensus_repeat	Method
GGAGCCGGGCTTGCCCGCGATGGCGGCCTGACAGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012830_3

>merge|NZ_CP012830|3|3306356-3306465|CRISPRCasFinder
GGAGCCGGGCTTGCCCGCGATGGCGGCCTGACAGCCGGCCTATCTCTAAGCAGGTGTACACCAATCCATTGTGGGAGCCGGGCTTGCCCGCGATGGCGGCCTGACAGCCG

>NZ_CP012830|3|3|3306356-3306465|CRISPRCasFinder
GGAGCCGGGCTTGCCCGCGATGGCGGCCTGACAGCCG	GCCTATCTCTAAGCAGGTGTACACCAATCCATTGTG
GGAGCCGGGCTTGCCCGCGATGGCGGCCTGACAGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012830.1\|WP_054595657.1\|3309062_3309323_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378182
NZ_CP012830.1\|WP_054595650.1\|3302660_3302948_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054595659.1\|3310118_3312260_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP012830.1\|WP_054595652.1\|3305277_3305502_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054595654.1\|3306823_3307030_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_081013733.1\|3308867_3309050_+\|CPXCG-motif-containing-cysteine-rich-protein	unknown	unknown	gnl\|CDD\|379524
NZ_CP012830.1\|WP_054595647.1\|3299647_3300763_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|334462
NZ_CP012830.1\|WP_102667281.1\|3297374_3298034_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP012830.1\|WP_054595648.1\|3300759_3301695_-\|4-hydroxyproline-epimerase	unknown	unknown	gnl\|CDD\|172473
NZ_CP012830.1\|WP_054595651.1\|3303017_3304526_-\|malate-dehydrogenase-(quinone)	unknown	unknown	gnl\|CDD\|183983
NZ_CP012830.1\|WP_054595655.1\|3307209_3307500_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054595646.1\|3299414_3299651_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|379229
NZ_CP012830.1\|WP_054595656.1\|3307560_3308727_-\|glycerol-acyltransferase	unknown	unknown	gnl\|CDD\|153255
NZ_CP012830.1\|WP_054595653.1\|3305684_3306269_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367729
NZ_CP012830.1\|WP_054595660.1\|3312533_3313352_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320690
NZ_CP012830.1\|WP_054595662.1\|3314413_3315412_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP012830.1\|WP_054595645.1\|3298149_3299418_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223523
NZ_CP012830.1\|WP_054595661.1\|3313577_3314162_-\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_CP012830.1\|WP_054595658.1\|3309359_3309980_+\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NZ_CP012830.1\|WP_054595649.1\|3301801_3302482_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715

Protein	Function_ID	Function_description	E-value
NZ_CP012830.1\|WP_054595653.1\|3305684_3306269_+\|hypothetical-protein	gnl\|CDD\|367729	pfam03923, Lipoprotein_16, Uncharacterized lipoprotein. The function of this presumed lipoprotein is unknown. The family includes E. coli YajG.	1.25915e-08
NZ_CP012830.1\|WP_054595645.1\|3298149_3299418_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223523	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].	5.22183e-27
NZ_CP012830.1\|WP_054595659.1\|3310118_3312260_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	8.86786e-79
NZ_CP012830.1\|WP_102667281.1\|3297374_3298034_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.32413e-27
NZ_CP012830.1\|WP_081013733.1\|3308867_3309050_+\|CPXCG-motif-containing-cysteine-rich-protein	gnl\|CDD\|379524	pfam14255, Cys_rich_CPXG, Cysteine-rich CPXCG. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. There are 5 conserved cysteines which occur in a CPXCG motif and a DCXXCCXP motif.	2.42334e-19
NZ_CP012830.1\|WP_054595647.1\|3299647_3300763_-\|FAD-binding-oxidoreductase	gnl\|CDD\|334462	pfam01266, DAO, FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.	2.00299e-55
NZ_CP012830.1\|WP_054595648.1\|3300759_3301695_-\|4-hydroxyproline-epimerase	gnl\|CDD\|172473	PRK13970, PRK13970, 4-hydroxyproline epimerase.	2.2946e-176
NZ_CP012830.1\|WP_054595651.1\|3303017_3304526_-\|malate-dehydrogenase-(quinone)	gnl\|CDD\|183983	PRK13339, PRK13339, malate:quinone oxidoreductase; Reviewed.	0
NZ_CP012830.1\|WP_054595646.1\|3299414_3299651_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|379229	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain. The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This cluster appears within sarcosine oxidase proteins.	5.77176e-19
NZ_CP012830.1\|WP_054595656.1\|3307560_3308727_-\|glycerol-acyltransferase	gnl\|CDD\|153255	cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.	2.06369e-07
NZ_CP012830.1\|WP_054595657.1\|3309062_3309323_+\|hypothetical-protein	gnl\|CDD\|378182	pfam09413, DUF2007, Putative prokaryotic signal transducing protein. This is a family of putative prokaryotic signal transducing proteins of Pii-type.	0.000192599
NZ_CP012830.1\|WP_054595660.1\|3312533_3313352_+\|M48-family-metallopeptidase	gnl\|CDD\|320690	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	5.33135e-82
NZ_CP012830.1\|WP_054595662.1\|3314413_3315412_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	1.97506e-88
NZ_CP012830.1\|WP_054595649.1\|3301801_3302482_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	9.33625e-57
NZ_CP012830.1\|WP_054595661.1\|3313577_3314162_-\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	3.56859e-60
NZ_CP012830.1\|WP_054595658.1\|3309359_3309980_+\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	1.03202e-57

>NZ_CP012830.1|WP_054595653.1|3305684_3306269_+|hypothetical-protein
MLQRLLFGLITVTSLTLVGCANSPQQLAPEPKLTTQLAPVGHGQPVVVRVVDGRPSPTLGTRGGLYPETSAITVQGAQILPKLQAQAEAAVRLLGFTPTPNAYNVPQLTVTLAELTYQSPKEGMYVTEATIGAAFRSDVQNANHRYSGRYAASLNQRFGMAPNQETNTKLVSDVLSDALTRLFKDPTVGQMLAQ
>NZ_CP012830.1|WP_054595652.1|3305277_3305502_-|hypothetical-protein
MQFLWLLFASRRKYRYFAQLDSNQCCLAFKHCRVPPEGDGWVEIEEIRLNWLHQPLPASARLSPRNAHARLHAV
>NZ_CP012830.1|WP_054595651.1|3303017_3304526_-|malate-dehydrogenase-(quinone)
MAHNEAVDVVLVGAGIMSATLAVLLKELDPAIKLEVVELMDSGAAESSNPWNNAGTGHAGLCELNYTPQAADGSVDIKKAVHINTQFEVSKQFWSYLTRKGTFGSSKSFISPVPHLSFVQGDAGVSFLKERFKVLSKHHAFSEMEYTEDKAKMAEWMPLMMPGRPADEVIAATRVINGTDVNFGALTNQLLKHLTSAPDAQVKYCKRVTGLKRNGNGWTVSIKDVNSGNSREVDAKFVFLGAGGAALPLLQASGIEESKGFGGFPISGQWLRCDNPEVVKHHQAKVYSQAAVGSPPMSVPHLDTRVVDGQKSLLFGPYAGFTTKFLKHGSFMDLPMSVRLGNIGPMLAVAKNNMDLTKYLVSEVMQSMEQRLESLRRFYPQAKAEDWRLEVAGQRVQIIKKDPKKGGILQFGTELVAAKDGSLAALLGASPGASVTVSIMLELIEKCFPNKAKGEWAAKLAEIFPAREKVLETDAALYRKINAQNNIALELVEESSETPSFA
>NZ_CP012830.1|WP_054595650.1|3302660_3302948_+|hypothetical-protein
MRKDKKQVIGDEIGDAQIKLFLDFEPVDATSPSLHKLIKAYRGLRIDDFERFLAFFVEAGYDLDGKDEHGKDFVALIQDQRNAADYIELIQKARG
>NZ_CP012830.1|WP_054595649.1|3301801_3302482_-|GntR-family-transcriptional-regulator
MPLPSFNAPNLGIVPSASEVIVKHLREAIIGGHFAEDEPIRQDDIARLFNVSKIPVREALKRLEAEGLVQFQRNKGAVVTKISEPELAQIFEVRVLLEVQAIRLAVPNMTEATFARAESICAEFLDENNIGRWAELNWALHACLYEPAQRPFLLNLIRSIHDKVERYLRMQMSFSEGKDRADHEHREIIAACRAGDADKAAELIEQHIIGVCRTLYEHLPNAPARI
>NZ_CP012830.1|WP_054595648.1|3300759_3301695_-|4-hydroxyproline-epimerase
MKRIHVLDSHTGGEPTRLVIAGFPELGSGSMAERKRRLAEEHDHWRTATVLEPRGSDVLVGALLCEPQDPEACAGVIFFNNSGYLGMCGHGTIGLVASLAYLERIEPGVHRIETPVGTVEATLHEDRSVSVRNVPAYRYRKAVPLTLPGYGTASGDIAWGGNWFFLIADHGQRIASDNLEALTAYTWAVREALENQGIRGEDGGEIDHIELFADDPVADSRNFVLCPGKAYDRSPCGTGTSAKLACLAADGKLQPGEVWRQASVIGSQFEASYERLDEQRIIPTIRGRAHMSGESHLLLEEDDPFVWGIGS
>NZ_CP012830.1|WP_054595647.1|3299647_3300763_-|FAD-binding-oxidoreductase
MNADVIVIGAGIVGSACAFELAQRGLDVLVLDSQRGGATAVGMGHLVAMDDNPAELALSQYSIELWRQWKPRLDPDCAYRNCGTLWLAANDEEMAGAEHKRQTLKARGIACEMLDPRALYEAEPMLRPGLSGALKVSGDGILYAPNAAHWLLKQSAGRITRRTVEVTQVDGNQLRLSSGERLRAEAVVLANGIHATELCPDLPIRPKKGHLLITDRYPGKIHHQLVELGYVTSAHASEGTSVAFNAQPRPTGQLFLGSSRQFDTTDLSVEPAVLARMLRRAIDYLPELARMNAIRSWTGLRAATPDGLPLLGEHPQQAGLWLAAGHEGLGVTTAPGSAQLLAAQLCNSTPAIDPTPYLPGRFLSTAQGLRA
>NZ_CP012830.1|WP_054595646.1|3299414_3299651_-|(2Fe-2S)-binding-protein
MIEVSLDGRSVTVDAGTTVAALLYLAGDGCSRTSVSGQRRAPFCGMGVCQECRVNIDGQRRLACQTTCRTGMRVETRP
>NZ_CP012830.1|WP_054595645.1|3298149_3299418_-|NAD(P)/FAD-dependent-oxidoreductase
MNVELLIIGAGPAGMAAALAAAPSGARIAIIDDNPAPGGQIWRDGVNAHLPASAQAHRQKLAAASNVQVFNSTRVVALAGPKKLLLEDPEHGWIIEYEQLILCTGARELLLPFPGWTLPGVTGAGGLQALIKGGMPVAGERLVIAGSGPLLLASAATAKKAGAQVLQIAEQAPLSAVARFALQLRKWPAKGLQAVQLFDRHYRCDSHVLEAYGDSHLQGVRLNRQGRIVDIPCERLACGFGLIPNTQLAQALGCELKDDAIAVDTSQLSSLNGHYAAGECTGFGGSELALVEGAIAGLMAVGEVQQARALWPQRQHWQAFADQLRRSFALRDELKQLARPDTLICRCEDVALSALKTCTGWNQAKLHTRCGMGACQGRVCGAATRYLFDWPQPAPRPPFSPTRIDTLLQLAELPNGASVTVE
>NZ_CP012830.1|WP_102667281.1|3297374_3298034_-|AraC-family-transcriptional-regulator
MPGVVFFIKDTAARYVLINQTLAQRCGAKEPNALLGKTAEQVFPSHFGPHYTEQDRRVLSDGSPLSDQLELHLYPGREPGWCLTHKLALRDTQGRIIGMAGISYDLLAPQSSHPAYEKLAAVDGHIREHYAQHIALGELTALSGFSVAQLERLCKRIFQLTPRQMIHKARLGAATQLLSGELPITEIALRCGYTDHSAFSRQFKALTGVSPSQYRDNHR
>NZ_CP012830.1|WP_054595654.1|3306823_3307030_-|hypothetical-protein
MLHAEIQDRLYLITQSDEQQNLVGSLAFNVQDRHWLVYCALGGHPHADLPETDLLTGVSMLDFYVEAA
>NZ_CP012830.1|WP_054595655.1|3307209_3307500_+|hypothetical-protein
MMSLHMSWSAVSAHPGSLMNLFALLIALPGAWLLHVTRRRERLALKNLEAQSAVRAIDEPLLFPESATLRLNRFCYRFGFACLALALLLSWISRHF
>NZ_CP012830.1|WP_054595656.1|3307560_3308727_-|glycerol-acyltransferase
MMGEFDAIRPYDDSEVPAVLARLLGDKAFLDILTHFRFPRFAGAFGWMLKPLIAYRLRREFAGVRSVATLQDKVEFYVDHTIERATDGVTYTGVEQFKSGRAYLFLANHRDIVMDPAFVNYAIYHAGLPTPRIAIGDNLLQKPFVSDLMRLNKSFIVHRSISGRREKMAAYQLLSAYINHSILNDCQSIWIAQAEGRAKDGDDRTESAILKMFHMSRKDEPFGEVIQSLNLTPVSISYEYDPCDQAKARELYIRATTGSYTKVPGEDDASIAKGITGYKGRVHVNFAAPISELFEDTKQLAIEMDRQILGGYRLFPVHYLAYAQWSNADPQLQVPSAATLFPAEELAKAQQEWQSRLDACPEEHRPFLVLQYATPVRNQYRVKAGLPL
>NZ_CP012830.1|WP_081013733.1|3308867_3309050_+|CPXCG-motif-containing-cysteine-rich-protein
MLETERYECPYCGEESEAVLDLSGGDQTYIEDCPVCCRPITFTLQTDGHEWMLEVHSENE
>NZ_CP012830.1|WP_054595657.1|3309062_3309323_+|hypothetical-protein
MQRIYEPENLMEGELLQGMLASEGVEAHLVGRDLLGGAGELPVFGLLGLAVDNDQAQYARELIAAYNAALPMPGDEPDSFPDVLVC
>NZ_CP012830.1|WP_054595658.1|3309359_3309980_+|SOS-response-associated-peptidase
MCGRFALFRWNPAFAALPGFPADQQAQWNISPNDSVLILRAEAGQRTLARARWGLTPPWLTDLSKTPAHARAETVAEQPMFREAFRQRRCLLPANGFYEWRGTTRKRPYWLTPGEGSALFFAAIWEAYPVQEQVWLSTAVVTQAASNQRRPLILDAAGQEAWLNPETPLHTLQALLASEPAALRERVLANLVNDPKLNAPECLTPG
>NZ_CP012830.1|WP_054595659.1|3310118_3312260_-|methyl-accepting-chemotaxis-protein
MKFKSIQFSVAALAGAIVLSVVAALVLYALFSGARTQEMVQQRTQAQFEQVIEQRLRGLAQTQVSQIQRELEAPLLIAGGLVRVNALIGSQDADGKPALTLSREQLISLIKENVAKNPKILGTYIGWEPNALDHNDAAYIGSKTVGIDATTGRFLPWWFRNDNGTLGVDKLADVNDRTVLSTGVRSSEYYLCSQESKKSCVIDPAPYKVGDKIVMLASFIEPIMLNGTFQGIVGADLSVNFIQEMLLAANQKLYNGAGEMALIGGNQRLVAYTKDPSKFGEKVSDILDATQVANLGKLNRGEVTYNVDKANGRIELYLPFGIGQTDARWTLLLQLPLNAVMADLQQLQGDLNTQRKADTFGMAMVGLVIAGLGLLVIWLVGHGIARPLKQMVAMLDDIAQGEGDLTRRLSSDRADELGSIAKGFNTFLAKLQAMITQVVTSVQSVSDSSEHTADIAIRTNLGVHKQMAEIDQVATAVQEMTATAQDVARNATQAAQAASHADQAAAQGMQIVRDTSTSIGVLAVEIGKAVGVVQTLAKDSENINAILIAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQQATEEIQSMIQQLQQGTRDVVRVMEDSQNKTDESVQHAAKAAQALETITQAVSVINDMNTQIASAAEEQSAVADDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQRRLINQFKV
>NZ_CP012830.1|WP_054595660.1|3312533_3313352_+|M48-family-metallopeptidase
MSKALVLCALGASLLLSGCQSVNTTNGGAVGVERKQYMFSMLSTDEVNQMYAQSYQKTVGEASNKGVLDKNSSEAKRVQAIANRLIAQAPVFRPDSAQWTWEVNLIKSDELNANCGPGGKIIFYTGLIDSLKLTDDEIAAVMGHEIAHALREHGREAMSKAYGIEMAKQGAGALLGLGQDTLALADTVANYGMTLPNSRANENEADLIGLELAARAGYNPNAAITLWDKMSKASEGSPPEFMSTHPASSSRVASLQAAIPKVMPLYLKAKKS
>NZ_CP012830.1|WP_054595661.1|3313577_3314162_-|TMEM165/GDT1-family-protein
MLDSLLVPTAVVALAEIGDKTQLLALILAARFRKPWPIIAGIVAATLANHAAAGAVGAWFGSFFSDATLHWILAASFTATALWTLVPDKMDEDEASTARKFGPFLTTLIAFFLAEIGDKTQIATVMLAAQYPELWLVVIGTTLGMLIANVPVVLAGNFAADKLPLTLIRRLAASAFFILAIVAVYKAMQSSGWV
>NZ_CP012830.1|WP_054595662.1|3314413_3315412_-|class-I-SAM-dependent-methyltransferase
MDPRSEVLLRQAELFQGELLLAGLPADDLLGKLPNAHGWCWHAGDQAALDARFAERSHFGVNAPSREFETAVVFLPKSKDLTDYILNALASRLAGRELYLVGEKRSGIEGAAKQLSPFGKPRKLDSARHCQLWQVTVANAPEAKSLESLAQEYELPLAEGPLKVISLPGVFSHGRLDRGSALLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNTVTLLDVDAFAAASSRLTLAANGLEAEVLTGDGIDAAPMGLSAILSNPPFHVGVHTDYHATENLLRKAAKHLKNGGELRLVANSFLKYQPLIEEHLGVCAIKAEGQGFRIYRAKRG

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Crispr_ID: NZ_CP012830_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012830_4

3545557-3545661

Orphan

Consensus_repeat	Method
GGAGCCGAGCTTGCTCGCGATGGCGGCCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012830_4

>merge|NZ_CP012830|4|3545557-3545661|CRISPRCasFinder
GGAGCCGAGCTTGCTCGCGATGGCGGCCTGACACCCCCGGCCTATCTCTTGCGGATGTACACCAATCCAATGTGGGAGCCGAGCTTGCTCGCGATGGCGGTCTGA

>NZ_CP012830|4|4|3545557-3545661|CRISPRCasFinder
GGAGCCGAGCTTGCTCGCGATGGCGGCCTGA	CACCCCCGGCCTATCTCTTGCGGATGTACACCAATCCAATGTG
GGAGCCGAGCTTGCTCGCGATGGCGGTCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012830.1\|WP_054595835.1\|3547016_3549428_-\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|274418
NZ_CP012830.1\|WP_054595837.1\|3554951_3555737_-\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NZ_CP012830.1\|WP_054595827.1\|3537791_3539168_+\|multicopper-oxidase-family-protein	unknown	unknown	gnl\|CDD\|225043
NZ_CP012830.1\|WP_054595828.1\|3539167_3539665_+\|tRNA-adenosine(34)-deaminase-TadA	unknown	unknown	gnl\|CDD\|223663
NZ_CP012830.1\|WP_081013742.1\|3551480_3552161_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054595832.1\|3542428_3542821_-\|protease-inhibitor-I42-family-protein	unknown	unknown	gnl\|CDD\|378179
NZ_CP012830.1\|WP_054595838.1\|3555733_3556312_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP012830.1\|WP_019693422.1\|3551240_3551471_+\|DUF2132-domain-containing-protein	unknown	unknown	gnl\|CDD\|378300
NZ_CP012830.1\|WP_054595836.1\|3549513_3550896_-\|porin	unknown	unknown	gnl\|CDD\|226185
NZ_CP012830.1\|WP_054598250.1\|3557418_3559941_+\|pilus-assembly-protein-PapC	unknown	unknown	gnl\|CDD\|374266
NZ_CP012830.1\|WP_054595833.1\|3543023_3545444_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP012830.1\|WP_054595839.1\|3556823_3557309_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367947
NZ_CP012830.1\|WP_054595834.1\|3546095_3546467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054595829.1\|3539840_3540797_-\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	unknown	unknown	gnl\|CDD\|237898
NZ_CP012830.1\|WP_054595826.1\|3537240_3537531_+\|PTS-transporter-subunit-EIIB	unknown	unknown	gnl\|CDD\|273920
NZ_CP012830.1\|WP_054595830.1\|3540793_3541537_-\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	unknown	unknown	gnl\|CDD\|273244
NZ_CP012830.1\|WP_054595840.1\|3559975_3561241_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012830.1\|WP_054595831.1\|3541790_3542426_-\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|377946
NZ_CP012830.1\|WP_054595824.1\|3533418_3534642_+\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|367007
NZ_CP012830.1\|WP_054595825.1\|3534703_3537238_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006

Protein	Function_ID	Function_description	E-value
NZ_CP012830.1\|WP_054595835.1\|3547016_3549428_-\|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NZ_CP012830.1\|WP_054595837.1\|3554951_3555737_-\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	1.48439e-87
NZ_CP012830.1\|WP_054595827.1\|3537791_3539168_+\|multicopper-oxidase-family-protein	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.52997e-94
NZ_CP012830.1\|WP_054595828.1\|3539167_3539665_+\|tRNA-adenosine(34)-deaminase-TadA	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	6.97985e-64
NZ_CP012830.1\|WP_054595839.1\|3556823_3557309_+\|hypothetical-protein	gnl\|CDD\|367947	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit. Fimbriae, also known as pili, form filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometres. They enable the cell to colonise host epithelia. This family constitutes the major subunits of CS1 like pili, including CS2 and CFA1 from Escherichia coli, and also the Cable type II pilin major subunit from Burkholderia cepacia. The major subunit of CS1 pili is called CooA. Periplasmic CooA is mostly complexed with the assembly protein CooB. In addition, a small pool of CooA multimers, and CooA-CooD complexes exists, but the functional significance is unknown. A member of this family has also been identified in Salmonella typhi and Salmonella enterica.	0.000546102
NZ_CP012830.1\|WP_054595832.1\|3542428_3542821_-\|protease-inhibitor-I42-family-protein	gnl\|CDD\|378179	pfam09394, Inhibitor_I42, Chagasin family peptidase inhibitor I42. Chagasin is a cysteine peptidase inhibitor which forms a beta barrel structure.	1.02636e-29
NZ_CP012830.1\|WP_054595838.1\|3555733_3556312_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.31724e-15
NZ_CP012830.1\|WP_019693422.1\|3551240_3551471_+\|DUF2132-domain-containing-protein	gnl\|CDD\|378300	pfam09905, VF530, DNA-binding protein VF530. VF530 contains a unique four-helix motif that shows some similarity to the C-terminal double-stranded DNA (dsDNA) binding domain of RecA, as well as other nucleic acid binding domains.	3.90582e-42
NZ_CP012830.1\|WP_054595836.1\|3549513_3550896_-\|porin	gnl\|CDD\|226185	COG3659, OprB, Carbohydrate-selective porin [Cell envelope biogenesis, outer membrane].	3.02837e-150
NZ_CP012830.1\|WP_054595833.1\|3543023_3545444_-\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP012830.1\|WP_054598250.1\|3557418_3559941_+\|pilus-assembly-protein-PapC	gnl\|CDD\|374266	pfam15976, CooC_C, CS1-pili formation C-terminal. CooC_C is a highly conserved C-terminal domain on fimbrial outer membrane usher proteins like TcfC. The protein is required for CS1 pilus formation.	1.19134e-24
NZ_CP012830.1\|WP_054595829.1\|3539840_3540797_-\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	gnl\|CDD\|237898	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB.	0
NZ_CP012830.1\|WP_054595826.1\|3537240_3537531_+\|PTS-transporter-subunit-EIIB	gnl\|CDD\|273920	TIGR01998, N-acetylglucosamine_and_glucose_PTS, PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.62962e-08
NZ_CP012830.1\|WP_054595830.1\|3540793_3541537_-\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	gnl\|CDD\|273244	TIGR00740, tRNA_cmo5U34-methyltransferase, tRNA (cmo5U34)-methyltransferase. This tRNA methyltransferase is involved, together with cmoB, in preparing the uridine-5-oxyacetic acid (cmo5U) at position 34. [Unknown function, Enzymes of unknown specificity].	2.32602e-101
NZ_CP012830.1\|WP_054595831.1\|3541790_3542426_-\|lysoplasmalogenase	gnl\|CDD\|377946	pfam07947, YhhN, YhhN family. The members of this family are similar to the hypothetical protein yhhN expressed by E. coli. Many are annotated as possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. A human member of this family, formerly known as TMEM86B, is a lysoplasmalogenase that catalyzes the hydrolysis of the vinyl ether bond of lysoplasmalogen. Putative conserved active site residues have been proposed for the YhhN family.	9.7865e-32
NZ_CP012830.1\|WP_054595824.1\|3533418_3534642_+\|carbohydrate-porin	gnl\|CDD\|367007	pfam02264, LamB, LamB porin. Maltoporin (LamB protein) forms a trimeric structure which facilitates the diffusion of maltodextrins across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an antiparallel beta-barrel.	1.66623e-153
NZ_CP012830.1\|WP_054595825.1\|3534703_3537238_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0

>NZ_CP012830.1|WP_054595833.1|3543023_3545444_-|endopeptidase-La
MSDQQEFPENPSDYADPENAEHHTSSGKGLALPGQNLPDKVYIIPIHNRPFFPAQVLPVIVNEEPWAETLDLVAKSEHHSLALFFMDTPQEDPRHFDTSALPLYGTLVKIHHASRENGKLQFVAQGLTRVRLKTWLKHHRPPYLVEVEYPHQPSEPTDEVKAYGMALINAIKELLPLNPLYSEELKNYLNRFSPNDPSPLTDFAAALTSATGSELQEVLDCVPMLKRMEKVLPMLRKEVEVARLQKEISAEVNRKIGEHQREFFLKEQLKVIQQELGLTKDDRSADVEQFEQRLVGKVLPPQAQKRIEEEMNKLSILETGSPEYAVTRNYLEWATAVPWGVYGEDKLDLKHARKVLDQHHAGLDDIKDRILEFLAVGAYKGEIAGSIVLLVGPPGVGKTSVGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGALPGKLVQALKDVEVMNPVIMLDEIDKMGQSFQGDPASALLETLDPEQNVEFLDHYLDLRLDLSKVLFVCTANTLDSIPGPLLDRMEVIRLSGYITEEKVAIAKRHLWPKQLEKAGVSKTSLSISDSALKALIDGYAREAGVRQLEKQLGKLVRKAVVKLLDEPKAVIKIGPKDLEASLGMPVFRNEQVLSGTGVITGLAWTSMGGATLPIEATRIHTLNRGFKLTGQLGDVMKESAEIAYSYVSSHLKQFGGDAKFFDEAFIHLHVPEGATPKDGPSAGVTMASALLSLARNQPPKKGVAMTGELTLTGHVLPIGGVREKVIAARRQKIFELILPEPNRGSFEELPDYLKEGITVHFAKRFADVAKVLF
>NZ_CP012830.1|WP_054595832.1|3542428_3542821_-|protease-inhibitor-I42-family-protein
MSPTRLLLPLSLALLAACATQPKHNVTVEKQSECPVQLNNGQHLILTLPSNPTTGYRWAIQDSAGGVLRAISPEVYSNPENTGLVGSGGQSTWRFQAFAAGNGRLRLTYQQPWEPEVEPAQTFDCAISVN
>NZ_CP012830.1|WP_054595831.1|3541790_3542426_-|lysoplasmalogenase
MGWLILALMGAVTFLYGVSAHAALLCLLVKPLPVLALLGWLHDAPPSDYRRWISLGLMFSVLGDVLLAWPGDLFVFGLGAFLVAHLVYLKAYLSDCRRLALAPLIFALGVGAVLLGILISHGLGPLLVPVIVYGVAISAMLWRALARLGSDVPKRSALLAAAGALAFVFSDSVIGISRFVVPFEAAPYVIILSYWLGQWGITASAFHQKPR
>NZ_CP012830.1|WP_054595830.1|3540793_3541537_-|carboxy-S-adenosyl-L-methionine-synthase-CmoA
MSKESDRLFAQPLAQVPDFAFNEDVVRVFPDMIKRSVPGYPTIVENLGVLAAQFAQPGSVLYDLGSSLGAVTQALRRHVRTDGCRVIAVDNSAAMVERCREYLNGQDSMFQELLPVEVIEGDILALEFKPASVVALNFTLQFIAPDQRLALLARIRQSLLPGGALILSEKLRFEDAEEHALLTDLHIAFKRANGYSELEIAQKRSAIENVMKPDSLQEHRERLLAAGFSKVVPWFQCLNFASLIALP
>NZ_CP012830.1|WP_054595829.1|3539840_3540797_-|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB
MIDLSPLARRLAGTPLADWANTLQAQLDVKMEKGHGDLERWQSALDALPKIQPSEVDLLNGLTLDTDCDDETRAQMRTALMGLSPWRKGPFDLFGVHVDTEWRSDWKWSRVAPHLDLKGKRILDVGCGNGYYMWRMLGAGADSVIGVDPNWLFFCQFQAVQRYLSEPNAWHLPFPFEDLPPNLEGFDTVFSMGVFYHRRSPIEHLLALKDCLVKGGELVLETLVIEGDEQQVLVPEDRYAQMRNVWFLPSVPALMLWLRRAGFSDVRCVDVSVTTVEEQRGTEWMKYQSLSDFLDPEDHSKTIEGLPAPMRAVIVAKK
>NZ_CP012830.1|WP_054595828.1|3539167_3539665_+|tRNA-adenosine(34)-deaminase-TadA
MRQIRPAKIIDRSRDQDFMREALALAAQGAALGEVPVGAVLVQDGEIIGRGFNCPISGSDPSAHAEMVAIRAAAQAVSNYRLPGSTLYVTLEPCSMCAGLIVHSRIARVVYGALEPKAGIVQSQGQFFTQGFLNHRVLVEGGVLAEECGTVLSEFFKARRAKPTD
>NZ_CP012830.1|WP_054595827.1|3537791_3539168_+|multicopper-oxidase-family-protein
MSFTRRQILGGLAGLAVVGVGAGGASRYWLGKMADANAGHDYELIAAPLDVELVPGHKTEAWAFGPSAPGTELRVRQGEWLRVRFINHLPVPTTIHWHGIRLPLEMDGVPYVSQLPVLPGEYFDYKFRVPDAGSYWYHPHVNSSEELGRGLVGPLIIEEREPTGFKYEKTLSLKSWHVDEEGAFVPFSVPREAARGGTAGRLATINGVPLPVIELPAGQITRVRLLNLDNTLTYRLNIPGVEAQIYALDGNPIEPRPLGKEYWLGPGMRICLAIKAPAAGEELSLRNGPVRIGTLRSVVNNDAPTQWPPALPANPISEPDLANAEKLNFNFEWVGSVSVNVDNGKPPSLWQINGKAWDITDKTCADRPIATLKKGKSYIFELKNMTQYQHPVHLHGMSFKVIASNRKKIIPYFTDTYLLGKNERAQVALVADNPGVWMFHCHVIDHMETGLMAAIEVA
>NZ_CP012830.1|WP_054595826.1|3537240_3537531_+|PTS-transporter-subunit-EIIB
MFEKMQRAFWKALTPDLVVDEPKVAAHPVSGLAANIVAALGGANNLKSQQRVALTRVRVELKDAALLDATALRAAGVPGVMTLAGGVVHLITGLDA
>NZ_CP012830.1|WP_054595825.1|3534703_3537238_+|phosphoenolpyruvate--protein-phosphotransferase
MTLTQPLQLLAPLSGVLMPLDHVPDPVFASRVIGDGLCIDPTSQVLCAPLAGVVSNLQHSGHAISITDDSGVQVLLHIGLDTVNLKGQGFSALVEQGQRVEAGQPLIEFDADYVALHARSLLTLMLVVSGEPFSLLTPDSGLVACAQPVLRLSLGDPRTVVAQEEGEALFSKPVHLPNPNGLHARPAAVFAQAAKGFAASICLHKQQDSANAKSLVAIMALQTVHGDALQVSAVGEDAELAISTLAQLLADGCGEAVTPVAVVAPVVEAQEVSTKLLRGVCASAGSAFGYVVQVAERTLEMPEFAADQQLERESLERALMHATQALQRLRDNAAGEAQADIFKAHQELLEDPSLLEQAQALIAEGKSAAFAWNSATEATATLFKSLGSTLLAERALDLMDVGQRVLKLILGVPDGVWELPDQAILIAEQLTPSQTAALDTGKVLGFATVGGGATSHVAILARALGLPAVCGLPLQVLSLASGTRVLLDADKGELHLDPAVSVIEQLHAKRQQQRQRHQHELENAARAAVTRDGHHFEVTANVASLAETEQAMSLGAEGIGLLRSEFLYQQRSVAPSHDEQAGTYSAIARALGPQRNLVVRTLDVGGDKPLAYVPMDSEANPFLGMRGIRLCLERPQLLREQFRAILSSAGLARLHIMLPMVSQLSELRLARLMLEEEALALGLRELPKLGIMIEVPAAALMADLFAPEVDFFSIGTNDLTQYTLAMDRDHPRLASQADSFHPSVLRLIASTVKAAHAHGKWVGVCGALASETLAVPLLLGLGVDELSVSVPLIPAIKAAIREVELSDCQAIAHQVLGLESAEQVREALSVQQQAMVETSQVLES
>NZ_CP012830.1|WP_054595824.1|3533418_3534642_+|carbohydrate-porin
MKTTINRSLAASCVCLVLPFSAHALEFAGYLRSGVGSTVNGGSQSCFKLPGAESKYRLGNECEQYAELELRQNLLTLDDGSVLSVDGMASLYNQYDRNLTFQGDNGSVRMPQMYAQWSNLPSLNGGSLWAGRRYYKRNDIHISDFYYWNQSATGGGIEDVKIGDLKYSYAFSRKDNLYQKDYVTRHDFNVSGFDTNPGGELEFGLSYIDKPDRRDAHAGWAITAQHVQKDFFGGKNKLALQYGEGPGTGLGYTGDVGLDDRNKSYRLVEFFDWQLTPRFGGQVEAVYQKDIRPDGNGQNWISLGVRPAYAITDQFKLVTELGHDQVEAPGGTRKLSKFTFAPTWSPKGPGFWERPEVRLYYTYASWNEAAKRAANELAQGSALSDTGAFGTALHGANVGLQVEYWWK
>NZ_CP012830.1|WP_054595834.1|3546095_3546467_-|hypothetical-protein
MHKVTPNPPETPSTSPYASTDSKKLHDAAERALDHYLKPPFDKGNLPDKRPSNIFAVIPDLDNETLLAHASETLASVNVLASDLAFELEGTRRHVALAIQQMVSLGELLVNRALDSFDQPEAP
>NZ_CP012830.1|WP_054595835.1|3547016_3549428_-|glucose/quinate/shikimate-family-membrane-bound-PQQ-dependent-dehydrogenase
MSTDGALSRSRLLPSLLGIVLLLMGLALLAGGIKLSMLGGSLYYLLAGIGLVLTGILLLAARRAALGLYAVVLFASTVWALWEIGLDWWQLVPRLSLWFALGVVLLLPWFRRPLLRDGAAPLGTAALSVAVVLAGATAVASQFTHPGEIMGELGRDTADMTSTAPAMPEGEWQAYGRTEFGDRYSPLKQITPANVGKLQEAWRIRTGDLPTADDPVELTNENTPLKVNGMLYACTAHSKVLALDPDTGKELWRFDPQIKSPVGFKGFAHMTCRGVSYYDENAYAKADNASSAVISEAGKAVAQACPRRLYLPTADARLIALNADTGKVCEGFGDHGVVDLTQGIGPFTPGGYYATSPAAITRDLVIMGGHVTDNESTNEPSGVIRAFDIRDGHLVWNWDSGNPEATEPLAPGKTYTRNSPNMWSLASVDEKLGMVYLPLGNQMPDQWGADRTPGAEKFSAGMVALDLATGKVRWNFQFTHHDLWDMDVGSQPTLLDMKTADGIKPALIAPTKQGSLYVLDRRNGTPIVPIREVPAPQGAVTGDHTAPTQARSDLNLLAPDLTEKAMWGASPFDQMLCRIQFKQLRYEGQYTPPSLQGSLIYPGNVGVFNWGSVSLDPVRQMLFTSPNYMAFVSKLIPQAEVAAGSKRESETSGVQPNTGAPYAVTMHPFMSPFGVPCQAPAWGYVAGIDLTTSKVVWKRKNGTSRDSSPLPIGLPIGVPSMGGSIVTAGGVGFLSGTLDQYLRAYDVNNGKELWKSRLPAGGQATPMTYTGKDGKQYVLLVVGGHGSLGTKMGDYVIAYKLSE
>NZ_CP012830.1|WP_054595836.1|3549513_3550896_-|porin
MPDIQTLRDSAVRPTFAARKAISLIGGLSALGLATCTQAAPAFDSDSPWMLGDWNGTRTELAEKGYDFKLDYTGEMGSNLHGGYDHDRTARYSDQFGLGTHLDLQKILGWHDAEFQLTITERNGNNISNDRVNDPRVGGFTSAQEVWGRGQTTRLTQMWYQQKFFDQKLDIKAGRFGEGEDFNSFPCDFQNLAFCGSQVGNWAGGIWYNWPVSQWALRVKYHLTPELYAQIGAYEQNPSNLDRDNGFKLSGSGTQGTVLPVELVWTPKLNGLPGEYRAGYYYSSAKATDVYKDSNGQPAALSGQPYRSASSKHGVWLGVQQQLTSRASDNSRGLSVFANGTMHDKKTNAVDNYVQAGVVYKGLFDARSKDDIGFAMARVHVNPAFRKNAEAINQAHAVFDFNDPSYLPPQDTEYSAELYYGVHVTNWLTVRPNLQYIRHPGGVNEVDDALIGGIKVQSSF
>NZ_CP012830.1|WP_019693422.1|3551240_3551471_+|DUF2132-domain-containing-protein
MTEQNTNPLHGVTLEQILNTLVQHYEWSGLAERIDIRCFKSDPSIKSSLTFLRKTPWAREKVEKLYVKLMRTKRPL
>NZ_CP012830.1|WP_081013742.1|3551480_3552161_+|hypothetical-protein
MPAEPTRLSPVMSRFTHSAAVLGWLGLSIQLYLVFYGRWSVSASQLGGLVSYFSYFTVLTNTLVATVLTCAVTARESKGRTFFLQPWVSSGIAVSITLVGLAYSLLLRHLWHPQGWQFIADELLHDIMPLLFLFYWWRCVPKGTLRLGHIGLWAIYPVLYFAFTLLRGHSLGLYPYPFIDVEKLGYPQVFINASGILLGFVLIALLVVGLDRWRGTGAGRVGIDSK
>NZ_CP012830.1|WP_054595837.1|3554951_3555737_-|siderophore-interacting-protein
MTEVIVQTIHRVSHELKRRRLEVLRVVDLTPRMRRITLGGAELAGFVSLGTDDHVKLFFPQTAAEHAALETLVLGAGKDNGPLPAMRDYTPRRYDLDTLELDIDFVLHGDGPAATWAAQATPGQFLHIGGPRGSMVVPDVFDSYLLIGDETALPAIARRLEGLTANRRALVVVEIENGAEQQVLESQAEVKVIWVLREAGQNHLLSTVQQLPMPSGELYAWIATESKASRQIRRVLLDEKGLSQDQVKAVGYWKLDDSDEE
>NZ_CP012830.1|WP_054595838.1|3555733_3556312_-|PadR-family-transcriptional-regulator
MRDHHSHRDHSDSRDGFEKRPGPGRERGGRGPRVFAPGDLKLLLLALIAEQPCHGYDLIRQIESMFDGAYSPSPGVIYPTLTFLEESEMILGDAEAGKKRYSITDAGRLSLSEQAIALDGVRMRIEVSKRSLRGQDRPAEIHEAVHNLRHALQMHHGRWSPEEILRVRDLLNNTAKAIVDGPVVQSVQEKDE
>NZ_CP012830.1|WP_054595839.1|3556823_3557309_+|hypothetical-protein
MFKKFAVAVPMTLLALSSSMAFAAEEIRSSINISANIPTYDFYAQPVNPDFGKDEKMAWNVITESLAPLRAAYDIRNTLGSVHAYVEGGPQHLNNGHTAIQLTYAFNGVTLTGMPKEVVSDAASNGGMRADLVITAALPGNNQVGFYTANPVVIFDAVPRI
>NZ_CP012830.1|WP_054598250.1|3557418_3559941_+|pilus-assembly-protein-PapC
MFPMTPIATALALCFCATALAAPADNGHTPRSLLAQAKGLPSEFEEHFFDVPLAVRVELDQQFLGEAMVVLTRDDRITLVDFNDVGDSTIQPSERDIWANHLKQGVTLGACQANCPEQLLAVHYSLENSLVSILTENAERDDQVQQYYNLPEGGSTGLIVRNQLNLNGGQNQDLGGRYGLEASSSLGNWTQAVNMQLSRLGGVDNQTYHAVHELFTQRELQGNFLRLGYFTPTSEGLTRQPRTFGASPDTALGVMYGSSDSLAINNPKPAVYPIYVTANRLGSVEIYRDGLLINTQAVPAGLQTLDTRPLPGGIYEVEVRLIEDGQITSSTLELVYKPSNWRNHDERWRYNLFAGRESKLLSNWEQQAAGDMTAGAAFNFLWHPRVILGLTGRQVRDSLQYGTSVDWTIVNNASLFANVYRTEDYGTGLDVQGLYSYGSGSLVASHNRSWLDTTRLYDTLPDGTRVRQRNVFIGQTSNSSLSLNHRLSRKSSVNARVSHSEGNTKGVGLDLGWTQRTQLFGSDANWRLSLFDRPGSFSSGNDRNRGLDLSVNIALGGPGEQWSGSIGTRTDRDGGRDNNASLTYRKDLQDHLLQSVSATAITDTYGIGLNAMASMQSDLANGDGFIQRSSFNNDLTGGLNLDSTVAVGGQKMVMTSQYHRSGAGMIIDVESDIDGITLRADDLSGGSAVLKPGRNFVPITAYKSSSVSFDFEGTDVPAATIQPARSSYHLNKGGVGYRQIRVMQTLTVLGRLIDPQGNPLKGHHIINHASRGVSEVDGFFSMEMNAGSPTLEVRHGNQLLCQFRLDPSQGRTENNVLMIGDLRCTPDTLADVGDAVQSAG
>NZ_CP012830.1|WP_054595840.1|3559975_3561241_+|hypothetical-protein
MNVSTVFPWRSVVALFIGACLVVSSLQAVAVVLPITATFNPDPSNPQKNEFKNTTRNVGFCWSYPAICKSYGIFSLRSHVNVGVQGAIQPNQEDVRKGAMIKTPAAWRALTVLNRETGELATVEVRIAGMGGVYRLSDSAMELTGEPEYVGAHTALWGSDWRTAPGPCVAIGTTTYYGPTGFQFFWLTPEETVCGKQAKFLIPGFGYESLDFTYELRTPDPLKMSTGVYQGTQVYSIGPGGDFDLGDVVAPSDNIIQLDFTLTVEHTLKVEIPPGGNRIELVPQGGWQAWLQQGRKPTRLFRDQTFNISASSRFKMNLECEYTQDGKTCSLREPVTGHAVPLNVSVSLPPGLTDAGGQSVSRQQLLRDGSTTKMFQPGVYVDRKPGTLHFEIPSSEVAEMIRPGSQRQYSGSVTVIWDSEV

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Crispr_ID: NZ_CP012830_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012830_5

4125647-4125751

Orphan

Consensus_repeat	Method
GGCTTGCCTGCGATGGCGGCCTGACAGCCGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012830_5

>merge|NZ_CP012830|5|4125647-4125751|CRISPRCasFinder
GGCTTGCCTGCGATGGCGGCCTGACAGCCGACCCGTCTCTTTCAGATATACCCCCATCCCCTGTGGGAGCCGGGCTTGCCCGCGATGGCGGCCTGACAGCCGACC

>NZ_CP012830|5|5|4125647-4125751|CRISPRCasFinder
GGCTTGCCTGCGATGGCGGCCTGACAGCCGACC	CGTCTCTTTCAGATATACCCCCATCCCCTGTGGGAGCCG
GGCTTGCCCGCGATGGCGGCCTGACAGCCGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012830.1\|WP_054596296.1\|4123689_4124472_+\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP012830.1\|WP_054596290.1\|4118591_4120001_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|225686
NZ_CP012830.1\|WP_008006721.1\|4132150_4132522_+\|response-regulator	unknown	unknown	gnl\|CDD\|381150
NZ_CP012830.1\|WP_054598271.1\|4121749_4122211_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|168189
NZ_CP012830.1\|WP_007894214.1\|4131243_4131984_+\|RNA-polymerase-sigma-factor-FliA	unknown	unknown	gnl\|CDD\|235901
NZ_CP012830.1\|WP_054596289.1\|4118141_4118486_+\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|366732
NZ_CP012830.1\|WP_054596293.1\|4122211_4122643_+\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|225731
NZ_CP012830.1\|WP_054596297.1\|4124475_4125615_+\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|235569
NZ_CP012830.1\|WP_054596299.1\|4126829_4128959_+\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NZ_CP012830.1\|WP_054596301.1\|4132553_4133342_+\|protein-phosphatase-CheZ	unknown	unknown	gnl\|CDD\|377318
NZ_CP012830.1\|WP_054596302.1\|4133380_4135624_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP012830.1\|WP_054596300.1\|4128970_4130302_+\|flagellar-biosynthesis-protein-FlhF	unknown	unknown	gnl\|CDD\|235570
NZ_CP012830.1\|WP_054596291.1\|4120201_4120702_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|180207
NZ_CP012830.1\|WP_054596292.1\|4120711_4121680_+\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP012830.1\|WP_054596294.1\|4122642_4123392_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP012830.1\|WP_019692370.1\|4130416_4131247_+\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|349758
NZ_CP012830.1\|WP_054596303.1\|4135673_4136801_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NZ_CP012830.1\|WP_054596298.1\|4126169_4126409_-\|DUF3077-domain-containing-protein	unknown	unknown	gnl\|CDD\|371447
NZ_CP012830.1\|WP_054596304.1\|4136800_4137541_+\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NZ_CP012830.1\|WP_054596295.1\|4123416_4123686_+\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567

Protein	Function_ID	Function_description	E-value
NZ_CP012830.1\|WP_054596296.1\|4123689_4124472_+\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	1.24926e-76
NZ_CP012830.1\|WP_054596290.1\|4118591_4120001_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|225686	COG3144, FliK, Flagellar hook-length control protein [Cell motility and secretion].	2.88426e-20
NZ_CP012830.1\|WP_008006721.1\|4132150_4132522_+\|response-regulator	gnl\|CDD\|381150	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY3, Escherichia coli CheY, and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.02085e-70
NZ_CP012830.1\|WP_054598271.1\|4121749_4122211_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|168189	PRK05698, fliN, flagellar motor switch protein FliN.	5.82594e-97
NZ_CP012830.1\|WP_007894214.1\|4131243_4131984_+\|RNA-polymerase-sigma-factor-FliA	gnl\|CDD\|235901	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated.	4.03874e-128
NZ_CP012830.1\|WP_054596289.1\|4118141_4118486_+\|Hpt-domain-containing-protein	gnl\|CDD\|366732	pfam01627, Hpt, Hpt domain. The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072).	4.19126e-12
NZ_CP012830.1\|WP_054596293.1\|4122211_4122643_+\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|225731	COG3190, FliO, Flagellar biogenesis protein [Cell motility and secretion].	7.66562e-28
NZ_CP012830.1\|WP_054596297.1\|4124475_4125615_+\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	0
NZ_CP012830.1\|WP_054596299.1\|4126829_4128959_+\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NZ_CP012830.1\|WP_054596301.1\|4132553_4133342_+\|protein-phosphatase-CheZ	gnl\|CDD\|377318	pfam04344, CheZ, Chemotaxis phosphatase, CheZ. This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterized by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site.	3.09617e-94
NZ_CP012830.1\|WP_054596302.1\|4133380_4135624_+\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP012830.1\|WP_054596300.1\|4128970_4130302_+\|flagellar-biosynthesis-protein-FlhF	gnl\|CDD\|235570	PRK05703, flhF, flagellar biosynthesis protein FlhF.	0
NZ_CP012830.1\|WP_054596291.1\|4120201_4120702_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|180207	PRK05696, fliL, flagellar basal body-associated protein FliL; Reviewed.	9.32589e-81
NZ_CP012830.1\|WP_054596292.1\|4120711_4121680_+\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	2.99948e-171
NZ_CP012830.1\|WP_054596294.1\|4122642_4123392_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	1.67054e-125
NZ_CP012830.1\|WP_019692370.1\|4130416_4131247_+\|MinD/ParA-family-protein	gnl\|CDD\|349758	cd02038, FlhG-like, MinD-like ATPase FlhG. FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.	5.58259e-119
NZ_CP012830.1\|WP_054596303.1\|4135673_4136801_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NZ_CP012830.1\|WP_054596298.1\|4126169_4126409_-\|DUF3077-domain-containing-protein	gnl\|CDD\|371447	pfam11275, DUF3077, Protein of unknown function (DUF3077). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	1.79768e-26
NZ_CP012830.1\|WP_054596304.1\|4136800_4137541_+\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	1.63434e-161
NZ_CP012830.1\|WP_054596295.1\|4123416_4123686_+\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	1.81651e-31

>NZ_CP012830.1|WP_054596297.1|4124475_4125615_+|flagellar-biosynthesis-protein-FlhB
MAESESGQDKTEDPTDKRKKDSREKGEIARSKELNTLAVMLAGAGGLLIYGGGLALDLLEIMRLNFSLPREVVLTPDAMGLYLLKSGKIAIIAVQPVLLTLLLAAIIGPISLGGWLFAGSSLAPKFSRMNPANGLKRMFSSTALIELLKALAKFLLVLFVALSVLRSDIDDLLRIAHEPLEQAIIHSVQLVGWSTLWMACGLILIAAVDVPVQLYQSHKKLLMTKQEVRDEHKDQEGRPEVKQRIRQLQREMSQRRMMAAIPEADVVITNPTHYAVALKYDPEKGGAPMLVAKGSDFLALKIREIAVANEVLLLESPALARSIYYSTELDQEIPGGLYLAVAQVLAYVYQIRQYRAGKGKRPDPLKDELPIPPDLRRDS
>NZ_CP012830.1|WP_054596296.1|4123689_4124472_+|flagellar-type-III-secretion-system-protein-FliR
MSLLALTDAQISTWVASFMLPLFRVGAVLTTMPVFGTTLVPKRIRLYFALAITVVITPGLPPMPQVNPLDLSGLLLIAEQILIGALLGFSLQLFFQAFVVAGQIVSIQMGMGFASMVDPTNGVSAAVIGQFLTMLVTLLFLGMNGHLVVFEVLTESFTTLPVGSGMLVNHFWEMAGKMGWVLGAAMLLVLPAITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGLVIFWVSLGDILNQYQPLATEALQLLRDMAQAR
>NZ_CP012830.1|WP_054596295.1|4123416_4123686_+|flagellar-biosynthesis-protein-FliQ
MTPEVAVDLFREALWLTTMMVAILVVPSLLVGLLVAMFQAATQINEQTLSFLPRLLVMLITLIVAGPWLIQTFMEYILRLYTSIPQLIG
>NZ_CP012830.1|WP_054596294.1|4122642_4123392_+|flagellar-type-III-secretion-system-pore-protein-FliP
MPLRILLTLVLMLAAPLAFAADPLSIPAITLGTNANGAQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDLELFMRLSKRTDIATPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLASSFGGV
>NZ_CP012830.1|WP_054596293.1|4122211_4122643_+|flagellar-biosynthetic-protein-FliO
MKAFLGVLLALPLSAWAAEPVAAAATPAVGSGVAGQLTQLVLGLLMVLGLIFFLAWLLRRVQQAGPAGKGQVIELIGSRALGPRDRLVLVQVGNEQILLGLTPGTITPLHVLKEPVQVPSTEQATPEFAQRLMELLGKDKDKK
>NZ_CP012830.1|WP_054598271.1|4121749_4122211_+|flagellar-motor-switch-protein-FliN
MADEMNTQDDQALADEWAAALEETGDAGQDDIDALLAADAASSSSSSRLAMEEFGSVPKNHEPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
>NZ_CP012830.1|WP_054596292.1|4120711_4121680_+|flagellar-motor-switch-protein-FliM
MAVQDLLSQDEIDALLHGVDDGLVQTDNAAEPGSVKSYDLTSQDRIVRGRMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEVNFEYINSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVNALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDVIPVDMPEEMIMRANGVPAFKVKMGSHKGNLALQVIEPIERR
>NZ_CP012830.1|WP_054596291.1|4120201_4120702_+|flagellar-basal-body-associated-protein-FliL
MAKSEAAVKDPAGKGKLKLILVIVLAVLLAIGLSVGATWYFMHSAQSKPAPAAETASNAKPAAIYEPMAPAFVANYNQNGRQRYMQVSITLQARNQADLDALKVHMPVIRNNLVMLFSAQSFDTLATPVGQEMLRQKATASVQEVAQKEVGKVVIDQLLFTNFVLQ
>NZ_CP012830.1|WP_054596290.1|4118591_4120001_+|flagellar-hook-length-control-protein-FliK
MPLAPNSLLQAASQAKTQSVSASVPVNAPAAPAEPRDKAASFSQVYAKQAQATPASSADGAGKNVRDKVADSTGKKVAPDDKSAAPQATVADNGKSLPADKPADTSDKATSDVSGASDSAAAKDAPVADSTPLDPTLDPALAQAVQPMPTLVPVPVPDPQTPPVVAQVQVQTQPQVDPAFTATVTPAPAQPLVATDPSFDPASDPLDAMPAVRLALEQSGHVSASSQPPTKATPDQADSEPTVAQNFANGMASMLDVQTSKDSTSQGGEKSFSGLIDDGLKDLKSATSDTRVDDFANRLAALTQAATPKTANALPVNQPIAMHQSGWTEEVVNRVMYLSSANLKAADIQLQPAELGRLDIRVNMVPDQQTQVTFMSAHVGVREALDSQMHRLRDMFTQQGMGQVDVNVSDQSRGWQGQGQQQAQQGQGAGATASGGRLGSADEELPANVAEAAASTTSVIGSSAVDYYA
>NZ_CP012830.1|WP_054596289.1|4118141_4118486_+|Hpt-domain-containing-protein
MTDIHLDHDVLSALQEVMEDEYPILLDTFLQDSETRLTQLRETQDPDQLLSAAHSFKGSSSNMGATRLAELCNELEQRAKQKSLAGIEELVGEIDGEFAIVRRLYSEERQRFHC
>NZ_CP012830.1|WP_054596298.1|4126169_4126409_-|DUF3077-domain-containing-protein
MHNDQASFRVNSGVSIHEALPHVSDLLHLSKMLAEDAAMERKTDRCAWASHYLQEMSKAVIDNAVKVIAASNNHQKAEH
>NZ_CP012830.1|WP_054596299.1|4126829_4128959_+|flagellar-biosynthesis-protein-FlhA
MDRSQLINSARSNLADLSRGNLGVPLLLLVMLAMMMLPVPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFAVFPTILLVATLLRLALNVASTRVVMLHGQDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQPAAKLRRMEVAQEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGMAVGIFQHGMSFGDAGKVYALLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEDMGKQINRQMFASPKALAVAAGLMAVMGLVPGMPHFSFLSMAAVAAGGAYLFWKKHNIVKVQALEEVKRQQDLLPSPARAMETKELGWDDVTPIDMIGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDLAPSAYRLTLMGVILAEAEIYPDRELAINPGQVYGTLNGITAKDPAFGLEAVWIEISQRPQAQSLGYTVVDASTVVATHLNQILYKHSSELIGHEEVQQLMQLLAKSSPKLAEELVPGVVSLSQLLKVLQALLAEQVPVRDIRSIAEAIANNAAKSQDTAALVAAVRVGVSRAIVQSIVGTESELPVITLEPRLEQILLNSLQKAGQGSEEGVLLEPSMAEKLQRSLIDAAQRQEMQGQPVILLVAGPVRAMLSRFGRLAVPGLHVLAYQEIPDNKQVTIVATVGPNG
>NZ_CP012830.1|WP_054596300.1|4128970_4130302_+|flagellar-biosynthesis-protein-FlhF
MQVKRFFAADMRQAMKLVRDELGADAAIIGNRRIAGGVELTAALDYKLSALAPRVSNIELEDELRKTQSRIVTAQAELSLRGDGEGDASASTNRQLFAGLPLTAAEPLIEPTFAERPRPAPAPVHSAGVDPRAFDSMRFELNGLRELLEVQLGSLAWNQLQGSRPQQANLWRRLQRIGLSGPLSRDLLELITEIEEPRQAWRMLLAHLARMIVTPEIEPLEEGGVIAMVGPAGMGKTTTLAKLAARYVLKYGAQNIALVSMDSFRIGAQEQLKTLGRILNVSVTHVDPGQSLAQALDPLLRKRVVLIDTAGLQASDPALRMQLESLAGRGIKSKNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPDDLHLPRRHQLVSRAVSVQMQEEPSEEAMADMFADLYHSPAKRVG
>NZ_CP012830.1|WP_019692370.1|4130416_4131247_+|MinD/ParA-family-protein
MGSMHPVQVIAVTGGKGGVGKTNVSVNLSLALAELGRRVMLLDADLGLANVDVLLGLTPKRTLADVIEGRCELRDVLLQGPGGIRIVPAASGTQSMVHLSPAQHAGLIQAFSDIGDNLDVLVIDTAAGIGESVVSFVRAAQEVLLVVCDEPTSITDAYALIKLLNRDYGMNRFRVLANMAQSPQEGRNLFAKLTKVTDRFLDVALQYVGAVPYDECVRKAVQKQRAVYEAFPRSKCALAFKAIAQKVDTWPLPANPRGHLEFFVERLVQQTAGPVL
>NZ_CP012830.1|WP_007894214.1|4131243_4131984_+|RNA-polymerase-sigma-factor-FliA
MTASGYNLYKKSARDAQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRSIEAKTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASAHLEPSRDLEDERFQAALADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGEWRAR
>NZ_CP012830.1|WP_008006721.1|4132150_4132522_+|response-regulator
MKILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGITAIPVLNSGSIDFLVTDWNMPGMTGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKIFERIG
>NZ_CP012830.1|WP_054596301.1|4132553_4133342_+|protein-phosphatase-CheZ
MEQRESSQGDFESTLKKHAHELVESLEKGRFGDAVQLIHELNQTRDRGLYQEVGKLTRELHSAIVNFQIDPNMPQAEEVSQITDATERLSYVVKLTEAAANRTMDLVENSTPLVNGLSTDAQALSADWGRFMRREVGAEEFRELARRVDGFLTRSVEESQVVSGNLNDILLAQDYQDLTGQVIKRVTQLVTEVESNLLKLVLMASQVDRFAGIEHDHEAMLAEKDPQKHLSQGEGPQIHADKREDVVSGQDDVDDLLSSLGF
>NZ_CP012830.1|WP_054596302.1|4133380_4135624_+|chemotaxis-protein-CheA
MSFGADEEILQDFLVEAGEILEQLSEQLVELESRPDDADLLNAIFRGFHTVKGGAGFLQLNELVECCHIAENVFDILRKGERRVDSELMDVVLEALDAVNSMFSEVRERAPITAATPELLAALARLAEPQTADVAQPVAEVVEAPAAESESGDITDNEFELLLDSLNAVKAQAESGAPVAPAPEAAAGSDEITDAEFESLLDQLHGKGQFAPDAVAAAPAAPAAPKAAGDSSDITDDEFEALLDQLHGKGNFAVDALESAIAAVPAPAAPVAAAVGSDLISDHEFESLLDELHGKGKFTEVGTGSAASVAAPVAKAAAPAPVAKAPEPKAETPKPAAAAAPAPARAAASPPPEKPASEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGLNSGDEAMSKAVSNLDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGEETDLDKNLVEALADPLVHLVRNSVDHGIEEPADREAMGKPRSGKVILSAEQEGDHILLSISDDGKGMDADVLRGIAVKKGLMDKDAADRLSESDCFNLIFAPGFSTKTEISDVSGRGVGMDVVKTKIAQLNGTINIYSTKGKGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLDLSRTNVVDGQEVVIVRDKALPLFYLKRWLVSSAAHEEQREGHVVILSVGTQRIGFVVDQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDVPSMLKRYAARRI
>NZ_CP012830.1|WP_054596303.1|4135673_4136801_+|chemotaxis-response-regulator-protein-glutamate-methylesterase
MAVKVLVVDDSGFFRRRVSEILSADPSIQVVGTATNGKEAIDQALALKPDVITMDYEMPMMDGITAVRHIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVDFLPKNFEDISRNPEKVKQLLCEKVHSISRSNRRFSAYSAPAPAAAPAPAPAPSSFGSSAPAPVRPAPTPIPARAPVASASSPAPKRKAYKLVAIGTSTGGPVALQRVLTQLPANFPAPIVLIQHMPAAFTKAFAERLDKLCRISVKEAEDGDILRPGLALLAPGGKQMMIDGRGAVKILPGDERLNYKPCVDITFGSAAKSYGDKVLAVVLTGMGADGREGARLLKQGGSAVWAQDEASCVIYGMPMAIVKADLADAIYGLDDIGKHLAEACI
>NZ_CP012830.1|WP_054596304.1|4136800_4137541_+|flagellar-motor-protein
MDVLSLIGIIMAFIAIIGGNYLEGGHLGALANGPAALIVLGGTIGAALLQSPMSAFKRAMQILRWILFPPRVDLAGGIDRVVNWSLTARKEGLLGLEGVADSEPDSYSRKGLQLLVDGAEPESIRSILEVDFYTQESRDIEAAKVFESMGGYAPTIGIIGAVMGLIHVMGNLGDPSQLGSGIAVAFVATIYGVASANLVLLPIASKLKSIALRQSRYREMLLEGILSIAEGENPRSIELKLQGFMD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8791 : 51872

Pseudomonas_phage(65.62%)

portal,capsid,tail,terminase,head,integrase,lysis,tRNA

attL 13224:13249|attR 58124:58149

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054593106.1\|8791_9889_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_054593107.1\|9888_10923_-	selenide, water dikinase SelD	NA	NA	NA	NA
WP_054593108.1\|11190_12147_+	nucleoside-specific channel-forming protein Tsx	NA	NA	NA	NA
WP_054593109.1\|12189_13224_+	purine nucleoside permease	NA	NA	NA	NA
13224:13249	attL	NA	NA	NA	NA
WP_054593110.1\|13398_14355_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_081013678.1\|14385_14559_-	DUF1427 family protein	NA	NA	NA	NA
WP_054593111.1\|14652_15441_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019689605.1\|15557_15725_-	metallothionein	NA	NA	NA	NA
WP_054593112.1\|15962_16775_+	hypothetical protein	NA	NA	NA	NA
WP_054593113.1\|16941_17520_+	hypothetical protein	NA	NA	NA	NA
WP_054593114.1\|17529_18240_-	phospholipase	NA	NA	NA	NA
WP_054593115.1\|19236_19452_+	hypothetical protein	A0A2H4J177	uncultured_Caudovirales_phage	9.7e-20	77.9
WP_054593116.1\|19510_20884_+	ATP-binding protein	Q6JIF3	Burkholderia_virus	6.3e-88	37.5
WP_146016096.1\|21630_21984_-	hypothetical protein	NA	NA	NA	NA
WP_054593117.1\|22083_23322_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	3.5e-05	48.1
WP_054593118.1\|23323_24007_+	hypothetical protein	NA	NA	NA	NA
WP_054593119.1\|24035_25019_-	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	3.4e-120	65.9
WP_054593120.1\|24991_25696_-	hypothetical protein	A0A1D9CA29	Salinivibrio_phage	3.1e-38	38.3
WP_054593121.1\|25692_26238_-	hypothetical protein	A0A0U4J942	Pseudomonas_phage	3.0e-57	65.0
WP_054593122.1\|26234_27158_-	hypothetical protein	NA	NA	NA	NA
WP_054593123.1\|27154_27862_-	hypothetical protein	A0A0U4JEJ6	Pseudomonas_phage	1.1e-59	48.5
WP_054593124.1\|27870_29544_-\|tail	phage tail protein	A0A0U4K5K2	Pseudomonas_phage	8.5e-119	46.0
WP_054593125.1\|29554_30079_-\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	1.2e-74	74.7
WP_054593126.1\|30075_31251_-	hypothetical protein	A0A0U4JJ14	Pseudomonas_phage	2.8e-153	70.6
WP_054593127.1\|31247_31565_-	DUF2590 family protein	A0A0U4B0N5	Pseudomonas_phage	4.0e-38	78.4
WP_054593128.1\|31561_33547_-\|tail	phage tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	3.8e-134	42.6
WP_054593129.1\|33716_34007_-	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	1.2e-25	68.2
WP_054593130.1\|34059_34527_-\|lysis	lysis protein	A0A0U4JXC2	Pseudomonas_phage	1.8e-26	47.9
WP_054593131.1\|34523_35051_-	hypothetical protein	NA	NA	NA	NA
WP_081013679.1\|35047_35371_-	hypothetical protein	NA	NA	NA	NA
WP_054593133.1\|35370_35580_-	hypothetical protein	A0A0U4IIN4	Pseudomonas_phage	3.5e-14	53.6
WP_054593134.1\|35579_36032_-	DUF2597 family protein	A0A0U3TH58	Pseudomonas_phage	1.6e-59	74.0
WP_054593135.1\|36038_37154_-	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	3.4e-140	67.4
WP_054593136.1\|37165_37849_-	hypothetical protein	A0A0U4ISN1	Pseudomonas_phage	2.3e-62	61.1
WP_054593137.1\|37835_38288_-\|tail	phage tail protein	A0A0U4IBS7	Pseudomonas_phage	1.1e-52	69.6
WP_054593138.1\|38284_38746_-\|head	head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	2.1e-48	62.1
WP_054593139.1\|38843_39566_-\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	8.2e-79	67.0
WP_054593140.1\|39562_40582_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	1.2e-123	67.6
WP_054593141.1\|40583_41498_-	hypothetical protein	A0A0U4JVV6	Pseudomonas_phage	8.8e-62	57.0
WP_054593142.1\|41661_43713_+\|terminase	terminase	A0A0U4JIZ9	Pseudomonas_phage	6.2e-265	73.1
WP_081013680.1\|43552_44503_+\|portal	phage portal protein	A0A0U4B0L9	Pseudomonas_phage	1.3e-103	79.7
WP_054593144.1\|44568_44826_+	ogr/Delta-like zinc finger family protein	A5X9H0	Aeromonas_virus	5.1e-15	48.2
WP_081013681.1\|44901_45087_-	hypothetical protein	NA	NA	NA	NA
WP_081013682.1\|45189_45555_-	helix-turn-helix domain-containing protein	A0A2H4JFL3	uncultured_Caudovirales_phage	5.5e-15	40.6
WP_054593146.1\|45629_45830_+	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	1.0e-10	52.3
WP_054593147.1\|45859_46339_+	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	4.6e-46	56.8
WP_054593148.1\|46335_46701_+	hypothetical protein	NA	NA	NA	NA
WP_054593149.1\|46773_47007_+	hypothetical protein	NA	NA	NA	NA
WP_054593150.1\|47009_49703_+	toprim domain protein	A0A2H4J936	uncultured_Caudovirales_phage	3.1e-304	56.1
WP_054593151.1\|49734_50130_+	hypothetical protein	NA	NA	NA	NA
WP_054593152.1\|50207_50474_+	hypothetical protein	NA	NA	NA	NA
WP_054593153.1\|50470_50746_+	Pyocin activator protein PrtN	I6NSR8	Burkholderia_phage	3.5e-22	59.8
WP_054593154.1\|50747_51872_-\|integrase	site-specific integrase	L7TP61	Pseudomonas_virus	2.0e-140	66.0
58124:58149	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1674726 : 1723945

Tupanvirus(20.0%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054594360.1\|1674726_1675230_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_054594361.1\|1675392_1676322_+	acyltransferase	NA	NA	NA	NA
WP_054594362.1\|1676280_1676844_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_054594363.1\|1677056_1677620_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_054594364.1\|1677844_1678438_+	fasciclin domain-containing protein	NA	NA	NA	NA
WP_054594365.1\|1678492_1679125_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_054594366.1\|1679121_1679796_+	anti-sigma factor	NA	NA	NA	NA
WP_019580688.1\|1680013_1681213_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	7.1e-11	27.9
WP_054594367.1\|1681431_1682289_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_054594368.1\|1682438_1683071_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_054594369.1\|1683123_1686141_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_054594370.1\|1686137_1686467_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_019693993.1\|1686481_1687732_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_054594371.1\|1687755_1689009_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.8e-101	53.2
WP_054594372.1\|1689437_1690478_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_054594373.1\|1690705_1691806_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_054594374.1\|1692088_1693384_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_054594376.1\|1694235_1694802_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_054594377.1\|1694823_1695594_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_054594378.1\|1695609_1696830_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_054594379.1\|1696829_1698779_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_054594380.1\|1698989_1701050_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_008033249.1\|1701065_1701596_-	hypothetical protein	NA	NA	NA	NA
WP_007907542.1\|1701675_1702653_-	membrane dipeptidase	NA	NA	NA	NA
WP_054594381.1\|1702888_1703290_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_054594382.1\|1703338_1703755_+	DUF3010 family protein	NA	NA	NA	NA
WP_054594383.1\|1703876_1704827_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_054594384.1\|1705020_1705965_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019694008.1\|1706051_1706939_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_054594385.1\|1707154_1708120_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_054594386.1\|1708299_1708776_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_054594387.1\|1708797_1709961_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_019694012.1\|1710349_1710613_+	hypothetical protein	NA	NA	NA	NA
WP_054594388.1\|1710765_1711869_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_054594389.1\|1712315_1713692_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_019694015.1\|1714123_1715074_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_054594390.1\|1715140_1715986_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_054594391.1\|1715982_1717161_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-25	37.1
WP_054594392.1\|1717428_1719426_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	7.0e-19	27.1
WP_054594393.1\|1719852_1720458_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_054594394.1\|1720554_1722027_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_054594395.1\|1722241_1723945_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	7.7e-51	30.4

DBSCAN-SWA_3

2046682 : 2098783

Pseudomonas_phage(16.67%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054594662.1\|2046682_2048113_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_054594664.1\|2048660_2049050_+	hypothetical protein	B5TK57	Pseudomonas_phage	1.3e-17	47.8
WP_054594665.1\|2049162_2049675_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_054594666.1\|2049789_2052402_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_102667306.1\|2052386_2052884_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_081013713.1\|2053015_2053549_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_054594667.1\|2053608_2054415_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_054594668.1\|2054426_2056508_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.6e-42	29.1
WP_054594669.1\|2056529_2057537_-	serine/threonine protein kinase	L7RCF3	Acanthamoeba_polyphaga_moumouvirus	1.4e-12	28.7
WP_054594670.1\|2057533_2058262_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_054594671.1\|2058261_2061795_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_054594672.1\|2061809_2062685_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_054594673.1\|2062690_2064022_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_054594674.1\|2064024_2064525_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_054594675.1\|2064530_2065730_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_008030659.1\|2065747_2065888_-	hypothetical protein	NA	NA	NA	NA
WP_054594676.1\|2066188_2067706_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_054594677.1\|2067716_2070371_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	5.9e-90	29.7
WP_054594678.1\|2070384_2071392_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_054594679.1\|2071355_2073143_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_081013714.1\|2073277_2073661_-	hypothetical protein	NA	NA	NA	NA
WP_102667449.1\|2073657_2074632_-	hypothetical protein	NA	NA	NA	NA
WP_054594681.1\|2074639_2075164_-	hypothetical protein	NA	NA	NA	NA
WP_054594682.1\|2075174_2075582_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_054594683.1\|2075595_2077071_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_054594684.1\|2077099_2077603_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_054594685.1\|2077635_2079192_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_102667305.1\|2079738_2080158_-	hypothetical protein	NA	NA	NA	NA
WP_054594687.1\|2080154_2080580_-	hypothetical protein	NA	NA	NA	NA
WP_054594688.1\|2080576_2080795_-	hypothetical protein	NA	NA	NA	NA
WP_054598201.1\|2080885_2081269_-	hypothetical protein	NA	NA	NA	NA
WP_054594690.1\|2081585_2082017_-	hypothetical protein	NA	NA	NA	NA
WP_054594691.1\|2082016_2082403_-	hypothetical protein	NA	NA	NA	NA
WP_054594692.1\|2082402_2082816_-	hypothetical protein	NA	NA	NA	NA
WP_054594693.1\|2082968_2083355_-	hypothetical protein	NA	NA	NA	NA
WP_054594694.1\|2083562_2084492_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_054594695.1\|2084576_2086319_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_054594696.1\|2086311_2087508_-	ABC transporter permease	NA	NA	NA	NA
WP_054594697.1\|2087507_2088224_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-16	32.8
WP_054594698.1\|2088223_2091268_-	protein kinase	S4VR00	Pandoravirus	5.3e-18	27.9
WP_102667304.1\|2091264_2091942_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_054594700.1\|2091996_2092650_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_054594701.1\|2092646_2096147_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_054594702.1\|2096143_2097442_-	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_054594703.1\|2097448_2098783_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_4

3646284 : 3745675

100

Pseudomonas_phage(36.73%)

protease,holin,tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162491271.1\|3646284_3647097_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	1.2e-12	30.6
WP_054595903.1\|3647222_3647627_-	SufE family protein	NA	NA	NA	NA
WP_054595904.1\|3647623_3648829_-	cysteine desulfurase	Q2XUY6	environmental_halophage	1.8e-70	37.4
WP_054595905.1\|3648966_3650001_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_054595906.1\|3650034_3650397_-	ArsC family reductase	NA	NA	NA	NA
WP_054595907.1\|3650621_3651821_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_054595908.1\|3651865_3654568_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_054595909.1\|3654611_3655394_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_003219330.1\|3655764_3656502_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_054595910.1\|3656706_3657570_+	elongation factor Ts	NA	NA	NA	NA
WP_011059526.1\|3657779_3658523_+	UMP kinase	NA	NA	NA	NA
WP_019692087.1\|3658519_3659077_+	ribosome recycling factor	NA	NA	NA	NA
WP_054595911.1\|3659094_3659850_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.1e-17	38.1
WP_054595912.1\|3659849_3660656_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_054595913.1\|3660652_3661843_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_054595914.1\|3661897_3663250_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_054595915.1\|3663324_3665724_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_019692093.1\|3665769_3666273_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_054595916.1\|3666276_3667332_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_007978374.1\|3667440_3667881_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_054595917.1\|3667877_3668654_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_054595918.1\|3668656_3669790_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_081013746.1\|3669801_3670428_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	2.0e-28	40.2
WP_054595920.1\|3670504_3674026_+	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	6.0e-199	36.7
WP_019692099.1\|3674179_3675127_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_054598254.1\|3675329_3676643_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_054595921.1\|3676917_3678549_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	7.6e-157	52.9
WP_054595922.1\|3678554_3679400_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.8e-48	42.4
WP_019692103.1\|3679563_3680853_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.8e-138	59.7
WP_019692104.1\|3681186_3681465_+	cell division protein FtsB	NA	NA	NA	NA
WP_162491284.1\|3681464_3682169_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_054595924.1\|3682790_3683687_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_054595925.1\|3683793_3684906_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	9.5e-34	29.3
WP_019692108.1\|3684914_3685760_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_054595926.1\|3685802_3686276_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_054595927.1\|3686272_3687331_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_054595928.1\|3687318_3688068_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.0e-68	53.0
WP_054595929.1\|3688067_3688745_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.4e-43	53.7
WP_054595930.1\|3688956_3689814_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	8.4e-06	33.3
WP_054595931.1\|3689919_3690924_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.6e-34	35.8
WP_019692115.1\|3691437_3691761_-	ferredoxin family protein	NA	NA	NA	NA
WP_054595932.1\|3691903_3694483_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.4e-27	22.0
WP_054598255.1\|3694683_3695418_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	3.3e-128	93.9
WP_054595933.1\|3695918_3696266_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	2.0e-46	80.9
WP_054595934.1\|3696442_3697024_+	DUF642 domain-containing protein	NA	NA	NA	NA
WP_054595935.1\|3697160_3697685_+	hypothetical protein	A0A2H4JEV5	uncultured_Caudovirales_phage	7.4e-29	42.1
WP_054595936.1\|3697706_3698318_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	3.1e-47	51.3
WP_054595937.1\|3698328_3698661_+	hypothetical protein	A0A2H4JI46	uncultured_Caudovirales_phage	2.1e-37	69.1
WP_054595938.1\|3698657_3699653_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	9.2e-113	65.0
WP_054595939.1\|3699649_3700309_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	2.2e-38	51.4
WP_054595940.1\|3700367_3700898_+	hypothetical protein	B0ZSG1	Halomonas_phage	2.5e-48	56.3
WP_158246523.1\|3700905_3701076_+	hypothetical protein	NA	NA	NA	NA
WP_054598256.1\|3701078_3701861_+	hypothetical protein	NA	NA	NA	NA
WP_054595941.1\|3701863_3702166_+	hypothetical protein	Q8H9M8	Vibrio_phage	4.7e-12	45.9
WP_054595942.1\|3702254_3702455_+	hypothetical protein	NA	NA	NA	NA
WP_054595943.1\|3702457_3703624_+	hypothetical protein	B0ZSG8	Halomonas_phage	6.1e-124	56.4
WP_054595944.1\|3703623_3704130_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	5.8e-23	35.7
WP_054595945.1\|3704221_3704809_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	1.5e-25	37.8
WP_054595946.1\|3704937_3707139_+\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	6.3e-13	25.3
WP_054595947.1\|3707138_3707522_+\|tail	phage tail protein	A2I2Y2	Vibrio_virus	9.2e-37	60.0
WP_054595948.1\|3707514_3707727_+\|tail	phage tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	5.3e-18	62.9
WP_054595949.1\|3707736_3708765_+\|tail	phage tail protein	A0A2H4JH05	uncultured_Caudovirales_phage	3.4e-102	56.7
WP_054595950.1\|3708889_3709474_+	hypothetical protein	B5TK65	Pseudomonas_phage	4.1e-89	83.3
WP_054595951.1\|3709470_3709653_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	4.5e-18	76.7
WP_054595952.1\|3709652_3711149_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	2.6e-260	92.0
WP_054595953.1\|3711215_3711563_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	6.8e-55	87.8
WP_054595954.1\|3711559_3711856_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	8.1e-41	90.8
WP_054595955.1\|3711986_3713750_+	hypothetical protein	B5TK70	Pseudomonas_phage	1.2e-83	63.0
WP_054595956.1\|3713736_3714975_+	hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	4.7e-183	78.2
WP_054595957.1\|3714978_3716019_+\|plate	baseplate protein	B5TK72	Pseudomonas_phage	1.3e-165	85.0
WP_054595958.1\|3716125_3716635_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	6.8e-80	90.5
WP_054595959.1\|3716634_3717033_+	hypothetical protein	B5TK74	Pseudomonas_phage	6.3e-65	90.9
WP_054595960.1\|3717022_3718063_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	2.5e-169	88.4
WP_054595961.1\|3718050_3718650_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	1.3e-101	88.4
WP_146016071.1\|3718661_3719810_+	hypothetical protein	B5TK79	Pseudomonas_phage	1.5e-29	35.0
WP_054595963.1\|3719828_3720392_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	3.1e-89	84.9
WP_054595964.1\|3720373_3720910_+	lysozyme	B5TK84	Pseudomonas_phage	1.5e-56	66.3
WP_054595965.1\|3720992_3721493_+	CinA family protein	B5TK85	Pseudomonas_phage	8.8e-72	83.1
WP_054595966.1\|3721576_3722629_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.2e-110	60.3
WP_054595967.1\|3722637_3723105_+	recombination regulator RecX	NA	NA	NA	NA
WP_054595968.1\|3723147_3724269_-	LOG family protein	NA	NA	NA	NA
WP_054595969.1\|3724773_3724968_+	hypothetical protein	NA	NA	NA	NA
WP_019692124.1\|3724976_3725402_-	hypothetical protein	NA	NA	NA	NA
WP_054595970.1\|3725592_3726351_+	DTW domain-containing protein	NA	NA	NA	NA
WP_054595971.1\|3726576_3727227_+	response regulator transcription factor	NA	NA	NA	NA
WP_054595972.1\|3727302_3727665_+	diacylglycerol kinase	NA	NA	NA	NA
WP_054595973.1\|3727661_3728588_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003189055.1\|3728724_3729504_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_054595974.1\|3729615_3730314_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_019692130.1\|3730562_3731030_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	2.3e-37	50.7
WP_054595975.1\|3731097_3731808_-	RNA-binding protein	NA	NA	NA	NA
WP_054595976.1\|3731891_3732365_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_054595977.1\|3732480_3733815_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_054595978.1\|3734137_3736042_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	2.3e-72	33.3
WP_054595979.1\|3736101_3736428_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_054595980.1\|3736969_3738265_-	virulence factor family protein	NA	NA	NA	NA
WP_054595981.1\|3738264_3740907_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_054595982.1\|3741860_3742922_+	DNA polymerase IV	NA	NA	NA	NA
WP_054595983.1\|3742988_3743942_-	hypothetical protein	NA	NA	NA	NA
WP_054595984.1\|3743959_3745675_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_5

4389957 : 4458404

Moraxella_phage(20.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054596505.1\|4389957_4390551_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_054596506.1\|4390938_4393254_-	DUF1343 domain-containing protein	NA	NA	NA	NA
WP_054596507.1\|4393277_4394552_-	putative glycoside hydrolase	NA	NA	NA	NA
WP_054596508.1\|4394548_4395367_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_054596509.1\|4395471_4396032_+	nitroreductase	NA	NA	NA	NA
WP_054596510.1\|4396050_4397016_-	ribose-phosphate pyrophosphokinase	NA	NA	NA	NA
WP_054596511.1\|4397042_4397609_-	phosphoribosyltransferase	NA	NA	NA	NA
WP_054596512.1\|4397896_4398604_+	phosphoribosyltransferase	NA	NA	NA	NA
WP_054596513.1\|4398596_4399274_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_054596514.1\|4399280_4400648_-	erythromycin esterase family protein	NA	NA	NA	NA
WP_081013770.1\|4400953_4402372_+	cytochrome C	NA	NA	NA	NA
WP_081013872.1\|4402517_4403057_+	c-type cytochrome	NA	NA	NA	NA
WP_081013771.1\|4403196_4404999_+	DNA polymerase/3'-5' exonuclease PolX	A0A2K9L4J5	Tupanvirus	8.8e-13	24.0
WP_054596516.1\|4405056_4407765_+	cation-transporting P-type ATPase	M1HJQ2	Paramecium_bursaria_Chlorella_virus	1.1e-62	29.3
WP_081013772.1\|4407857_4408244_-	hypothetical protein	NA	NA	NA	NA
WP_054596517.1\|4408275_4408860_-	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA
WP_054596518.1\|4409066_4409612_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_054596519.1\|4409706_4411200_-	arginine-ornithine antiporter	NA	NA	NA	NA
WP_081013773.1\|4411443_4413624_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.2e-80	36.4
WP_054596521.1\|4413627_4413882_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_054596522.1\|4413986_4414379_-	hypothetical protein	NA	NA	NA	NA
WP_054596523.1\|4414627_4415329_-	VIT family protein	NA	NA	NA	NA
WP_054596524.1\|4415408_4416374_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_054596525.1\|4416363_4418586_-	nitric oxide synthase	NA	NA	NA	NA
WP_054596526.1\|4418611_4419082_-	DUF2271 domain-containing protein	NA	NA	NA	NA
WP_054596527.1\|4419215_4419875_+	response regulator transcription factor	NA	NA	NA	NA
WP_054596528.1\|4419871_4421203_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_054596529.1\|4421325_4421835_+	DUF1993 domain-containing protein	NA	NA	NA	NA
WP_054596530.1\|4421922_4423155_-	serine/threonine transporter SstT	NA	NA	NA	NA
WP_054596531.1\|4423480_4424635_+	MFS transporter	NA	NA	NA	NA
WP_054596532.1\|4424639_4425539_-	transcriptional activator NhaR	NA	NA	NA	NA
WP_054596533.1\|4425674_4425926_+	hypothetical protein	NA	NA	NA	NA
WP_054596534.1\|4425955_4426705_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	2.8e-37	37.9
WP_054596535.1\|4427172_4427850_+	peptidase C39 family protein	NA	NA	NA	NA
WP_054596536.1\|4427931_4428873_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_054596537.1\|4429784_4430177_+	hypothetical protein	NA	NA	NA	NA
WP_054596538.1\|4430304_4431159_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.4e-29	33.9
WP_054596539.1\|4432315_4433626_+	trigger factor	NA	NA	NA	NA
WP_054596540.1\|4433718_4434360_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.4e-58	59.6
WP_054596541.1\|4434466_4435750_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.8e-138	59.5
WP_054596542.1\|4435948_4438345_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	4.2e-220	51.6
WP_002552737.1\|4438492_4438765_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	1.4e-18	58.4
WP_054596543.1\|4438996_4440856_+	hypothetical protein	NA	NA	NA	NA
WP_054596544.1\|4441128_4442013_+	DUF2242 domain-containing protein	NA	NA	NA	NA
WP_054596545.1\|4442366_4443407_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_054596546.1\|4443410_4444541_-	carbon-nitrogen hydrolase	NA	NA	NA	NA
WP_054596547.1\|4444751_4446791_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_054596548.1\|4446946_4447879_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_054596549.1\|4447865_4448423_-	cytochrome b	A0A0U2QLA7	Escherichia_phage	3.7e-18	42.5
WP_054596550.1\|4448624_4449452_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
WP_054596551.1\|4449549_4450659_-	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_054596552.1\|4450770_4451637_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_081013774.1\|4451686_4453480_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_054596553.1\|4453699_4454404_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_054598284.1\|4454540_4455866_-	protein kinase	NA	NA	NA	NA
WP_054596554.1\|4456192_4456693_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_054596555.1\|4456799_4457336_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_054596556.1\|4457356_4457899_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_054596557.1\|4457903_4458404_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_6

5720789 : 5783796

Pseudomonas_phage(60.53%)

tail,head,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054597542.1\|5720789_5721269_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_054597543.1\|5721283_5721589_+	NIPSNAP family protein	NA	NA	NA	NA
WP_081013826.1\|5721604_5722630_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA
WP_054597544.1\|5722876_5723212_+	DUF2834 domain-containing protein	NA	NA	NA	NA
WP_054597545.1\|5723223_5724264_-	asparaginase	NA	NA	NA	NA
WP_054597546.1\|5724366_5725953_-	RimK family protein	NA	NA	NA	NA
WP_054597548.1\|5726542_5726920_-	hypothetical protein	NA	NA	NA	NA
WP_054597549.1\|5727092_5727992_-	lipid A hydroxylase LpxO	H8ZJK8	Ostreococcus_tauri_virus	7.7e-34	36.3
WP_054597550.1\|5728598_5730029_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	5.3e-21	35.3
WP_054597551.1\|5730337_5730973_+	LysE family translocator	NA	NA	NA	NA
WP_054597552.1\|5731059_5731437_+	hypothetical protein	NA	NA	NA	NA
WP_054597553.1\|5731660_5731864_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_054598340.1\|5732736_5732994_+	hypothetical protein	NA	NA	NA	NA
WP_054597554.1\|5733128_5733389_+	hypothetical protein	NA	NA	NA	NA
WP_054597555.1\|5733478_5733694_-	hypothetical protein	NA	NA	NA	NA
WP_054597556.1\|5733847_5734468_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_054597557.1\|5734560_5735208_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_081013883.1\|5735290_5735464_-	DUF1737 domain-containing protein	NA	NA	NA	NA
WP_054597558.1\|5735835_5736165_+	hypothetical protein	NA	NA	NA	NA
WP_054597559.1\|5736345_5736705_-	hypothetical protein	NA	NA	NA	NA
WP_081013884.1\|5736864_5737056_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_054597561.1\|5738321_5739788_-	chitinase	NA	NA	NA	NA
WP_081013827.1\|5739835_5740471_-	lytic polysaccharide monooxygenase	A0A0K1Y848	Apis_mellifera_filamentous_virus	3.1e-05	26.9
WP_054597563.1\|5741023_5742712_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_054597564.1\|5742850_5743060_+	hypothetical protein	A0A1B0VP78	Pseudomonas_phage	3.6e-11	58.7
WP_054597565.1\|5743180_5744263_+	hypothetical protein	NA	NA	NA	NA
WP_054597566.1\|5744836_5745052_-	hypothetical protein	NA	NA	NA	NA
WP_146016094.1\|5745667_5746471_+	hypothetical protein	NA	NA	NA	NA
WP_054597568.1\|5746481_5747009_-	lysozyme	B5TK84	Pseudomonas_phage	2.1e-52	69.8
WP_054597569.1\|5747005_5747455_-	structural protein P5	A0A2H4J6R1	uncultured_Caudovirales_phage	1.5e-43	58.8
WP_054597570.1\|5747513_5747870_-	hypothetical protein	NA	NA	NA	NA
WP_054597571.1\|5748685_5749366_-	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	5.2e-43	40.9
WP_054597572.1\|5749365_5749677_-	hypothetical protein	NA	NA	NA	NA
WP_054597573.1\|5749685_5753243_-\|tail	phage tail protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	61.0
WP_054597574.1\|5753447_5754056_-\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	5.3e-63	66.3
WP_054597575.1\|5754098_5754521_-	hypothetical protein	A0A1B0VMK5	Pseudomonas_phage	1.5e-35	59.0
WP_054598341.1\|5754614_5754959_-	NIPSNAP family containing protein	NA	NA	NA	NA
WP_054597576.1\|5755467_5756481_+	hypothetical protein	NA	NA	NA	NA
WP_054597577.1\|5756607_5756877_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_054597578.1\|5756963_5757305_-	hypothetical protein	NA	NA	NA	NA
WP_158246528.1\|5758107_5758272_-	hypothetical protein	NA	NA	NA	NA
WP_054597580.1\|5758297_5759062_-	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	2.2e-130	81.3
WP_054597581.1\|5759064_5759814_-\|tail	phage minor tail protein L	A0A2H4J4Q5	uncultured_Caudovirales_phage	4.0e-129	84.7
WP_054597582.1\|5759823_5760162_-\|tail	phage tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	8.3e-50	78.6
WP_054597583.1\|5760161_5763419_-\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	7.1e-154	45.9
WP_054597584.1\|5763415_5763673_-	DUF1799 domain-containing protein	A0A2H4J4F7	uncultured_Caudovirales_phage	4.4e-19	54.9
WP_054597585.1\|5763732_5764113_-	hypothetical protein	A0A2H4IYQ5	uncultured_Caudovirales_phage	4.1e-29	54.3
WP_054597586.1\|5764116_5764770_-\|tail	phage tail protein	A0A1B0VMG2	Pseudomonas_phage	1.5e-103	88.5
WP_054597587.1\|5764872_5765535_-	DUF2625 domain-containing protein	NA	NA	NA	NA
WP_054597588.1\|5765616_5766036_-	DUF4128 domain-containing protein	A0A1B0VMI0	Pseudomonas_phage	5.5e-43	61.3
WP_054597589.1\|5766032_5766686_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	2.6e-100	83.3
WP_054597590.1\|5766682_5767054_-	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	6.8e-45	77.2
WP_054597591.1\|5767070_5767574_-	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	1.7e-70	80.2
WP_054597592.1\|5767577_5767895_-	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	1.2e-13	66.7
WP_054597593.1\|5767941_5768907_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	4.8e-159	87.7
WP_054598342.1\|5768919_5769648_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	9.1e-110	85.1
WP_054597594.1\|5769729_5770815_-\|head	phage head morphogenesis protein	A0A1B0VMF3	Pseudomonas_phage	9.5e-180	90.6
WP_054597595.1\|5770789_5772205_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	9.0e-247	87.3
WP_054597596.1\|5772201_5773689_-	hypothetical protein	A0A0H5ARR1	Pseudomonas_phage	8.5e-256	83.7
WP_054597597.1\|5773690_5774215_-	hypothetical protein	A0A2H4J2I6	uncultured_Caudovirales_phage	8.1e-60	70.1
WP_054597598.1\|5774775_5775030_-	hypothetical protein	NA	NA	NA	NA
WP_054597599.1\|5775276_5775537_-	hypothetical protein	A0A1B0VME7	Pseudomonas_phage	5.5e-25	66.2
WP_054597600.1\|5775539_5775851_-	hypothetical protein	A0A125RNL3	Pseudomonas_phage	8.8e-14	53.2
WP_054597601.1\|5776028_5776211_+	carbon storage regulator	NA	NA	NA	NA
WP_054598343.1\|5776419_5776698_+	hypothetical protein	NA	NA	NA	NA
WP_054597602.1\|5776970_5777426_-	hypothetical protein	NA	NA	NA	NA
WP_054597603.1\|5777581_5778259_-	hypothetical protein	NA	NA	NA	NA
WP_054597604.1\|5778255_5778876_-	recombination protein NinG	A0A059VA66	Pseudomonas_phage	3.9e-69	66.7
WP_054597605.1\|5778872_5779460_-	DUF1367 family protein	Q9MC49	Pseudomonas_phage	8.7e-95	83.6
WP_054598344.1\|5779470_5779971_-	hypothetical protein	H2BDI1	Pseudomonas_virus	1.9e-13	34.5
WP_054597606.1\|5779976_5780771_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	2.0e-57	51.7
WP_054597607.1\|5780757_5781741_-	hypothetical protein	A0A1B0VME0	Pseudomonas_phage	7.9e-109	67.0
WP_081013886.1\|5781742_5782465_-	Rha family transcriptional regulator	A0A2H4J111	uncultured_Caudovirales_phage	1.9e-104	78.2
WP_054597609.1\|5782710_5782917_-	hypothetical protein	A0A0U1UNM4	Pseudomonas_phage	1.7e-13	66.7
WP_081013828.1\|5783025_5783796_+	helix-turn-helix domain-containing protein	A0A0U4JEE2	Pseudomonas_phage	8.3e-53	47.3

DBSCAN-SWA_7

5790709 : 5799826

uncultured_Caudovirales_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_102667289.1\|5790709_5790958_+	hypothetical protein	A0A2H4J404	uncultured_Caudovirales_phage	3.5e-21	63.4
WP_054597620.1\|5790963_5791197_+	hypothetical protein	NA	NA	NA	NA
WP_054597621.1\|5791193_5791427_+	hypothetical protein	NA	NA	NA	NA
WP_054597622.1\|5791423_5791624_+	hypothetical protein	NA	NA	NA	NA
WP_054597623.1\|5791996_5793085_+	hypothetical protein	NA	NA	NA	NA
WP_054597624.1\|5793138_5794128_+	recombinase RecT	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	1.1e-65	58.4
WP_054597625.1\|5794127_5794790_+	exonuclease	A0A0U2BXF3	Paracoccus_phage	2.9e-30	36.8
WP_054597626.1\|5794871_5795198_+	hypothetical protein	A0A2H4J0R5	uncultured_Caudovirales_phage	3.2e-06	34.6
WP_054597627.1\|5795235_5795817_-	hypothetical protein	NA	NA	NA	NA
WP_054597628.1\|5795988_5796306_-	hypothetical protein	NA	NA	NA	NA
WP_054597629.1\|5796417_5796822_+	hypothetical protein	A0A0U4JNY7	Pseudomonas_phage	5.7e-37	57.0
WP_054597630.1\|5796836_5797019_-	hypothetical protein	NA	NA	NA	NA
WP_054597631.1\|5797098_5797956_+	phosphoadenosine phosphosulfate reductase family protein	A0A2K9VK66	Klebsiella_phage	3.5e-28	32.5
WP_081013888.1\|5797898_5798936_-	HNH endonuclease	NA	NA	NA	NA
WP_146016080.1\|5799290_5799485_-	hypothetical protein	NA	NA	NA	NA
WP_054597634.1\|5799592_5799826_-	hypothetical protein	A0A1B0VP27	Pseudomonas_phage	1.6e-23	69.3

DBSCAN-SWA_8

5958743 : 5992434

uncultured_Caudovirales_phage(56.67%)

portal,holin,capsid,tail,terminase,head,integrase,plate

attL 5950906:5950956|attR 5995355:5995405

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5950906:5950956	attL	NA	NA	NA	NA
WP_054597768.1\|5958743_5959538_-	DNA adenine methylase	C7BGE1	Burkholderia_phage	3.0e-98	65.0
WP_054597769.1\|5959688_5960234_-	lysozyme	B5TK84	Pseudomonas_phage	3.2e-35	52.6
WP_054597770.1\|5960215_5960875_-	glycoside hydrolase family 19 protein	A0A2H4J3Y3	uncultured_Caudovirales_phage	3.6e-57	60.7
WP_054597771.1\|5960923_5961970_-	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	6.6e-154	77.1
WP_054597772.1\|5962067_5962274_-\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	1.5e-22	71.6
WP_054597773.1\|5962248_5963094_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	2.2e-115	73.2
WP_054597774.1\|5963103_5965953_-\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	6.7e-100	39.9
WP_054597775.1\|5966103_5966703_-\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	6.7e-18	53.4
WP_054597776.1\|5966717_5967221_-\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	3.7e-62	71.9
WP_054597777.1\|5967233_5968400_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	1.3e-166	76.9
WP_081013836.1\|5968504_5968966_-\|tail	phage tail protein	B5TK82	Pseudomonas_phage	3.1e-23	39.5
WP_054597778.1\|5968969_5970502_-\|tail	phage tail protein	A0A077K818	Ralstonia_phage	2.1e-71	47.9
WP_054597779.1\|5970498_5971104_-\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	5.3e-79	69.8
WP_054597780.1\|5971105_5971987_-\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	7.4e-106	68.3
WP_054597781.1\|5971983_5972310_-\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.1e-33	64.2
WP_054597782.1\|5972315_5972543_-	hypothetical protein	NA	NA	NA	NA
WP_054597783.1\|5972600_5973164_-\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	2.4e-57	75.0
WP_054597784.1\|5973160_5973673_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	2.1e-60	64.1
WP_054597785.1\|5973665_5974331_-	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	1.4e-80	69.9
WP_054597786.1\|5974327_5974642_-	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	4.1e-27	54.7
WP_054597787.1\|5974644_5974869_-	hypothetical protein	NA	NA	NA	NA
WP_054597788.1\|5974870_5975899_-\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	4.0e-71	43.1
WP_054597789.1\|5975911_5976262_-\|head	head decoration protein	NA	NA	NA	NA
WP_054597790.1\|5976274_5977507_-	S49 family peptidase	A0A219Y8X7	Aeromonas_phage	1.7e-47	39.3
WP_054597791.1\|5977509_5979120_-\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	7.2e-99	43.5
WP_054597792.1\|5979122_5979338_-	hypothetical protein	NA	NA	NA	NA
WP_054597793.1\|5979348_5981238_-\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	3.1e-170	49.4
WP_054597794.1\|5981281_5981806_-	DNA packaging protein	A0A2D1GMW4	Marinobacter_phage	1.6e-20	39.2
WP_054597795.1\|5981937_5982276_-\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	1.1e-44	83.6
WP_054597796.1\|5982801_5983164_-	hypothetical protein	NA	NA	NA	NA
WP_054597797.1\|5983156_5985373_-	conjugal transfer protein TraC	A0A2D1GN57	Marinobacter_phage	6.0e-189	46.7
WP_081013837.1\|5985362_5985590_-	TraR/DksA family transcriptional regulator	A2I309	Vibrio_virus	4.2e-05	40.0
WP_054597798.1\|5985582_5986101_-	hypothetical protein	NA	NA	NA	NA
WP_054597799.1\|5986432_5986666_-	hypothetical protein	NA	NA	NA	NA
WP_054597800.1\|5986764_5987412_+	peptidase S24	A0A0M3LSL8	Mannheimia_phage	2.2e-14	42.2
WP_102667272.1\|5987440_5988466_+	hypothetical protein	NA	NA	NA	NA
WP_054597801.1\|5988725_5989316_+	hypothetical protein	NA	NA	NA	NA
WP_054597802.1\|5989326_5989608_+	DNA-binding protein	NA	NA	NA	NA
WP_158246525.1\|5989594_5989762_+	hypothetical protein	NA	NA	NA	NA
WP_054597803.1\|5989766_5990084_+	transcriptional regulator	NA	NA	NA	NA
WP_054597804.1\|5990143_5990563_+	hypothetical protein	NA	NA	NA	NA
WP_054597805.1\|5990559_5990781_+	hypothetical protein	NA	NA	NA	NA
WP_054597806.1\|5990869_5991106_+	hypothetical protein	NA	NA	NA	NA
WP_081013838.1\|5991102_5991366_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	6.7e-23	71.6
WP_054597807.1\|5991369_5992434_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	2.6e-113	60.0
5995355:5995405	attR	NA	NA	NA	NA

DBSCAN-SWA_9

6016037 : 6022261

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054598364.1\|6016037_6016430_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.1e-56	82.3
WP_054597832.1\|6016433_6016796_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	7.1e-39	64.2
WP_054597833.1\|6016795_6017095_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.3e-35	72.7
WP_054597834.1\|6017091_6017427_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	8.5e-47	81.1
WP_054597835.1\|6017423_6018425_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.1e-165	85.1
WP_054597836.1\|6018513_6019515_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_054597837.1\|6019585_6020980_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_054597838.1\|6020980_6022261_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-97	53.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012830

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection