Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012757 Staphylococcus aureus subsp. aureus strain JS395 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP012756 Staphylococcus aureus subsp. aureus strain JS395 chromosome, complete genome 7 crisprs cas3,csa3,DEDDh,WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6 2 10 11 0

Results visualization

1. NZ_CP012756
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012756_1 145082-145161 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012756_2 634161-634241 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012756_3 841270-841408 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012756_4 1030452-1030549 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012756_5 1407844-1408306 TypeIII NA
6 spacers
cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012756_6 1417028-1417275 TypeIII NA
3 spacers
cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012756_7 2111830-2111931 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP012756_1 1.1|145106|32|NZ_CP012756|CRISPRCasFinder 145106-145137 32 NZ_CP012756.1 12435-12466 1 0.969
NZ_CP012756_1 1.1|145106|32|NZ_CP012756|CRISPRCasFinder 145106-145137 32 NZ_CP012756.1 914126-914157 1 0.969
NZ_CP012756_1 1.1|145106|32|NZ_CP012756|CRISPRCasFinder 145106-145137 32 NZ_CP012756.1 693549-693580 2 0.938
NZ_CP012756_1 1.1|145106|32|NZ_CP012756|CRISPRCasFinder 145106-145137 32 NZ_CP012756.1 1071146-1071177 2 0.938
NZ_CP012756_1 1.1|145106|32|NZ_CP012756|CRISPRCasFinder 145106-145137 32 NZ_CP012756.1 1664982-1665013 2 0.938
NZ_CP012756_1 1.1|145106|32|NZ_CP012756|CRISPRCasFinder 145106-145137 32 NZ_CP012756.1 2438157-2438188 2 0.938
NZ_CP012756_3 3.1|841321|37|NZ_CP012756|CRISPRCasFinder 841321-841357 37 NZ_CP012756.1 841232-841268 2 0.946

1. spacer 1.1|145106|32|NZ_CP012756|CRISPRCasFinder matches to position: 12435-12466, mismatch: 1, identity: 0.969

attgggtatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctgtgttggggccc	Protospacer
****** *************************

2. spacer 1.1|145106|32|NZ_CP012756|CRISPRCasFinder matches to position: 914126-914157, mismatch: 1, identity: 0.969

attgggtatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctgtgttggggccc	Protospacer
****** *************************

3. spacer 1.1|145106|32|NZ_CP012756|CRISPRCasFinder matches to position: 693549-693580, mismatch: 2, identity: 0.938

attgggtatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctttgttggggccc	Protospacer
****** ************* ***********

4. spacer 1.1|145106|32|NZ_CP012756|CRISPRCasFinder matches to position: 1071146-1071177, mismatch: 2, identity: 0.938

attgggtatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctgtgtttgggccc	Protospacer
****** ****************** ******

5. spacer 1.1|145106|32|NZ_CP012756|CRISPRCasFinder matches to position: 1664982-1665013, mismatch: 2, identity: 0.938

attgggtatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctttgttggggccc	Protospacer
****** ************* ***********

6. spacer 1.1|145106|32|NZ_CP012756|CRISPRCasFinder matches to position: 2438157-2438188, mismatch: 2, identity: 0.938

attgggtatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctttgttggggccc	Protospacer
****** ************* ***********

7. spacer 3.1|841321|37|NZ_CP012756|CRISPRCasFinder matches to position: 841232-841268, mismatch: 2, identity: 0.946

agctcacaaaacccttgatatcattggtttcccatga	CRISPR spacer
agctcacaaaacccttgatatcactggtttctcatga	Protospacer
***********************.*******.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012756_5 5.5|1408165|34|NZ_CP012756|PILER-CR,CRT 1408165-1408198 34 NC_013373 Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence 26794-26827 2 0.941
NZ_CP012756_5 5.9|1408096|34|NZ_CP012756|CRISPRCasFinder 1408096-1408129 34 MK936475 Staphylococcus phage SA03-CTH2, complete genome 14281-14314 2 0.941
NZ_CP012756_5 5.9|1408096|34|NZ_CP012756|CRISPRCasFinder 1408096-1408129 34 MT926124 Staphylococcus phage vB_SauP_EBHT, complete genome 2846-2879 2 0.941
NZ_CP012756_5 5.9|1408096|34|NZ_CP012756|CRISPRCasFinder 1408096-1408129 34 MK922548 Staphylococcus phage SA46-CTH4, complete genome 3204-3237 2 0.941
NZ_CP012756_5 5.9|1408096|34|NZ_CP012756|CRISPRCasFinder 1408096-1408129 34 MK922547 Staphylococcus phage SA30-CTH2, complete genome 3197-3230 2 0.941
NZ_CP012756_5 5.9|1408096|34|NZ_CP012756|CRISPRCasFinder 1408096-1408129 34 KJ210330 Staphylococcus phage GRCS, complete genome 3491-3524 2 0.941
NZ_CP012756_5 5.10|1408167|32|NZ_CP012756|CRISPRCasFinder 1408167-1408198 32 NC_013373 Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence 26794-26825 2 0.938
NZ_CP012756_5 5.4|1408094|36|NZ_CP012756|PILER-CR,CRT 1408094-1408129 36 MK936475 Staphylococcus phage SA03-CTH2, complete genome 14279-14314 3 0.917
NZ_CP012756_5 5.4|1408094|36|NZ_CP012756|PILER-CR,CRT 1408094-1408129 36 MT926124 Staphylococcus phage vB_SauP_EBHT, complete genome 2846-2881 3 0.917
NZ_CP012756_5 5.4|1408094|36|NZ_CP012756|PILER-CR,CRT 1408094-1408129 36 MK922548 Staphylococcus phage SA46-CTH4, complete genome 3204-3239 3 0.917
NZ_CP012756_5 5.4|1408094|36|NZ_CP012756|PILER-CR,CRT 1408094-1408129 36 MK922547 Staphylococcus phage SA30-CTH2, complete genome 3197-3232 3 0.917
NZ_CP012756_5 5.4|1408094|36|NZ_CP012756|PILER-CR,CRT 1408094-1408129 36 KJ210330 Staphylococcus phage GRCS, complete genome 3491-3526 3 0.917
NZ_CP012756_5 5.11|1408236|34|NZ_CP012756|CRISPRCasFinder 1408236-1408269 34 NZ_CP043848 Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence 50879-50912 6 0.824
NZ_CP012756_5 5.12|1408234|36|NZ_CP012756|CRT 1408234-1408269 36 NZ_CP043848 Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence 50879-50914 6 0.833
NZ_CP012756_6 6.2|1417133|41|NZ_CP012756|CRISPRCasFinder 1417133-1417173 41 MF417907 Uncultured Caudovirales phage clone 7F_7, partial genome 31442-31482 6 0.854
NZ_CP012756_6 6.2|1417133|41|NZ_CP012756|CRISPRCasFinder 1417133-1417173 41 KY653129 Staphylococcus phage IME1365_01, complete genome 11951-11991 6 0.854
NZ_CP012756_2 2.1|634186|31|NZ_CP012756|CRISPRCasFinder 634186-634216 31 KM983333 Clostridium phage phiCTC2A, complete genome 10859-10889 7 0.774
NZ_CP012756_2 2.1|634186|31|NZ_CP012756|CRISPRCasFinder 634186-634216 31 KM983330 Clostridium phage phiCT19406A, complete genome 10859-10889 7 0.774
NZ_CP012756_2 2.1|634186|31|NZ_CP012756|CRISPRCasFinder 634186-634216 31 KM983329 Clostridium phage phiCT9441A, complete genome 11320-11350 7 0.774
NZ_CP012756_6 6.5|1417132|42|NZ_CP012756|CRT 1417132-1417173 42 KY653129 Staphylococcus phage IME1365_01, complete genome 11951-11992 7 0.833
NZ_CP012756_6 6.5|1417132|42|NZ_CP012756|CRT 1417132-1417173 42 MF417907 Uncultured Caudovirales phage clone 7F_7, partial genome 31441-31482 7 0.833
NZ_CP012756_5 5.9|1408096|34|NZ_CP012756|CRISPRCasFinder 1408096-1408129 34 KR131711 Fusobacterium phage Funu2 supercont1.1, partial genome 26442-26475 8 0.765
NZ_CP012756_5 5.7|1407952|35|NZ_CP012756|CRISPRCasFinder 1407952-1407986 35 AP014336 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C72, *** SEQUENCING IN PROGRESS *** 7580-7614 9 0.743
NZ_CP012756_5 5.7|1407952|35|NZ_CP012756|CRISPRCasFinder 1407952-1407986 35 AP013668 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C107A-MedDCM-OCT-S23-C39, *** SEQUENCING IN PROGRESS *** 12965-12999 9 0.743
NZ_CP012756_5 5.7|1407952|35|NZ_CP012756|CRISPRCasFinder 1407952-1407986 35 AP013410 Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C107A-MedDCM-OCT-S27-C42 17610-17644 9 0.743

1. spacer 5.5|1408165|34|NZ_CP012756|PILER-CR,CRT matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 2, identity: 0.941

ctcatctttcatgtcactgattaattcatttgta	CRISPR spacer
ctcatctttcatatcattgattaattcatttgta	Protospacer
************.***.*****************

2. spacer 5.9|1408096|34|NZ_CP012756|CRISPRCasFinder matches to MK936475 (Staphylococcus phage SA03-CTH2, complete genome) position: , mismatch: 2, identity: 0.941

agttaacggcattacctaataaaaatattttagg	CRISPR spacer
agttaacagcattacctaataagaatattttagg	Protospacer
*******.**************.***********

3. spacer 5.9|1408096|34|NZ_CP012756|CRISPRCasFinder matches to MT926124 (Staphylococcus phage vB_SauP_EBHT, complete genome) position: , mismatch: 2, identity: 0.941

agttaacggcattacctaataaaaatattttagg	CRISPR spacer
agttaacagcattacctaataaaaatatttttgg	Protospacer
*******.*********************** **

4. spacer 5.9|1408096|34|NZ_CP012756|CRISPRCasFinder matches to MK922548 (Staphylococcus phage SA46-CTH4, complete genome) position: , mismatch: 2, identity: 0.941

agttaacggcattacctaataaaaatattttagg	CRISPR spacer
agttaacagcattacctaataagaatattttagg	Protospacer
*******.**************.***********

5. spacer 5.9|1408096|34|NZ_CP012756|CRISPRCasFinder matches to MK922547 (Staphylococcus phage SA30-CTH2, complete genome) position: , mismatch: 2, identity: 0.941

agttaacggcattacctaataaaaatattttagg	CRISPR spacer
agttaacagcattacctaataagaatattttagg	Protospacer
*******.**************.***********

6. spacer 5.9|1408096|34|NZ_CP012756|CRISPRCasFinder matches to KJ210330 (Staphylococcus phage GRCS, complete genome) position: , mismatch: 2, identity: 0.941

agttaacggcattacctaataaaaatattttagg	CRISPR spacer
agttaacagcattacctaataaaaatatttttgg	Protospacer
*******.*********************** **

7. spacer 5.10|1408167|32|NZ_CP012756|CRISPRCasFinder matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 2, identity: 0.938

catctttcatgtcactgattaattcatttgta	CRISPR spacer
catctttcatatcattgattaattcatttgta	Protospacer
**********.***.*****************

8. spacer 5.4|1408094|36|NZ_CP012756|PILER-CR,CRT matches to MK936475 (Staphylococcus phage SA03-CTH2, complete genome) position: , mismatch: 3, identity: 0.917

taagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aaagttaacagcattacctaataagaatattttagg	Protospacer
 ********.**************.***********

9. spacer 5.4|1408094|36|NZ_CP012756|PILER-CR,CRT matches to MT926124 (Staphylococcus phage vB_SauP_EBHT, complete genome) position: , mismatch: 3, identity: 0.917

taagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aaagttaacagcattacctaataaaaatatttttgg	Protospacer
 ********.*********************** **

10. spacer 5.4|1408094|36|NZ_CP012756|PILER-CR,CRT matches to MK922548 (Staphylococcus phage SA46-CTH4, complete genome) position: , mismatch: 3, identity: 0.917

taagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aaagttaacagcattacctaataagaatattttagg	Protospacer
 ********.**************.***********

11. spacer 5.4|1408094|36|NZ_CP012756|PILER-CR,CRT matches to MK922547 (Staphylococcus phage SA30-CTH2, complete genome) position: , mismatch: 3, identity: 0.917

taagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aaagttaacagcattacctaataagaatattttagg	Protospacer
 ********.**************.***********

12. spacer 5.4|1408094|36|NZ_CP012756|PILER-CR,CRT matches to KJ210330 (Staphylococcus phage GRCS, complete genome) position: , mismatch: 3, identity: 0.917

taagttaacggcattacctaataaaaatattttagg	CRISPR spacer
aaagttaacagcattacctaataaaaatatttttgg	Protospacer
 ********.*********************** **

13. spacer 5.11|1408236|34|NZ_CP012756|CRISPRCasFinder matches to NZ_CP043848 (Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.824

gtaatagttgctcaataggtaataaaacgtcggt	CRISPR spacer
ggaatagttgctcgataggtaataaaacgtttac	Protospacer
* ***********.****************. ..

14. spacer 5.12|1408234|36|NZ_CP012756|CRT matches to NZ_CP043848 (Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.833

cggtaatagttgctcaataggtaataaaacgtcggt	CRISPR spacer
cgggaatagttgctcgataggtaataaaacgtttac	Protospacer
*** ***********.****************. ..

15. spacer 6.2|1417133|41|NZ_CP012756|CRISPRCasFinder matches to MF417907 (Uncultured Caudovirales phage clone 7F_7, partial genome) position: , mismatch: 6, identity: 0.854

aactgatatactcctttaccatgtattaattctggaccact	CRISPR spacer
tattcatatactcccttgccatgtattaattctggaccacg	Protospacer
 *.* *********.**.********************** 

16. spacer 6.2|1417133|41|NZ_CP012756|CRISPRCasFinder matches to KY653129 (Staphylococcus phage IME1365_01, complete genome) position: , mismatch: 6, identity: 0.854

aactgatatactcctttaccatgtattaattctggaccact	CRISPR spacer
tattcataaactcctttgccatgtattaattctggaccacg	Protospacer
 *.* *** ********.********************** 

17. spacer 2.1|634186|31|NZ_CP012756|CRISPRCasFinder matches to KM983333 (Clostridium phage phiCTC2A, complete genome) position: , mismatch: 7, identity: 0.774

cagaagctggcggaaagtcagctttcaatcg	CRISPR spacer
gatgaactggctgaaagacagctttcaattg	Protospacer
 * .*.***** ***** ***********.*

18. spacer 2.1|634186|31|NZ_CP012756|CRISPRCasFinder matches to KM983330 (Clostridium phage phiCT19406A, complete genome) position: , mismatch: 7, identity: 0.774

cagaagctggcggaaagtcagctttcaatcg	CRISPR spacer
gatgaactggctgaaagacagctttcaattg	Protospacer
 * .*.***** ***** ***********.*

19. spacer 2.1|634186|31|NZ_CP012756|CRISPRCasFinder matches to KM983329 (Clostridium phage phiCT9441A, complete genome) position: , mismatch: 7, identity: 0.774

cagaagctggcggaaagtcagctttcaatcg	CRISPR spacer
gatgaactggctgaaagacagctttcaattg	Protospacer
 * .*.***** ***** ***********.*

20. spacer 6.5|1417132|42|NZ_CP012756|CRT matches to KY653129 (Staphylococcus phage IME1365_01, complete genome) position: , mismatch: 7, identity: 0.833

gaactgatatactcctttaccatgtattaattctggaccact	CRISPR spacer
atattcataaactcctttgccatgtattaattctggaccacg	Protospacer
. *.* *** ********.********************** 

21. spacer 6.5|1417132|42|NZ_CP012756|CRT matches to MF417907 (Uncultured Caudovirales phage clone 7F_7, partial genome) position: , mismatch: 7, identity: 0.833

gaactgatatactcctttaccatgtattaattctggaccact	CRISPR spacer
atattcatatactcccttgccatgtattaattctggaccacg	Protospacer
. *.* *********.**.********************** 

22. spacer 5.9|1408096|34|NZ_CP012756|CRISPRCasFinder matches to KR131711 (Fusobacterium phage Funu2 supercont1.1, partial genome) position: , mismatch: 8, identity: 0.765

agttaacggcattacctaataaaaatattttagg	CRISPR spacer
aattaactgcattatctaataaaaatggttactg	Protospacer
*.***** ******.***********. **   *

23. spacer 5.7|1407952|35|NZ_CP012756|CRISPRCasFinder matches to AP014336 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C72, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.743

caacttcgtcatctttcatcatttctcttacatca	CRISPR spacer
agtatcggggatctttcatcatttgtcttacatca	Protospacer
 .  *. *  ************** **********

24. spacer 5.7|1407952|35|NZ_CP012756|CRISPRCasFinder matches to AP013668 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C107A-MedDCM-OCT-S23-C39, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.743

caacttcgtcatctttcatcatttctcttacatca	CRISPR spacer
aatatcttttatcattcatcatttcttttacatca	Protospacer
 *  *.. *.*** ************.********

25. spacer 5.7|1407952|35|NZ_CP012756|CRISPRCasFinder matches to AP013410 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C107A-MedDCM-OCT-S27-C42) position: , mismatch: 9, identity: 0.743

caacttcgtcatctttcatcatttctcttacatca	CRISPR spacer
aatatcttttatcattcatcatttcttttacatca	Protospacer
 *  *.. *.*** ************.********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 116712 : 125024 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_2 327436 : 396432 66 Staphylococcus_phage(95.56%) protease,tRNA NA
DBSCAN-SWA_3 498861 : 569192 73 Staphylococcus_phage(75.68%) holin,tail,integrase,terminase,protease,coat,transposase attL 504075:504089|attR 569688:569702
DBSCAN-SWA_4 598796 : 614049 22 Staphylococcus_phage(83.33%) coat,terminase NA
DBSCAN-SWA_5 722370 : 736077 14 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_6 740963 : 746344 7 Streptococcus_phage(100.0%) transposase,integrase attL 736841:736856|attR 755356:755371
DBSCAN-SWA_7 1387372 : 1450715 60 Staphylococcus_phage(58.33%) bacteriocin,transposase NA
DBSCAN-SWA_8 2142901 : 2150720 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_9 2162696 : 2176974 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_10 2229065 : 2243321 21 Staphylococcus_phage(80.0%) coat,integrase,terminase attL 2228735:2228750|attR 2235155:2235170
DBSCAN-SWA_11 2413461 : 2421934 9 Synechococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage