CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012831	Pseudomonas fluorescens strain FW300-N2C3 chromosome, complete genome	4 crisprs	DEDDh,cas3,csa3,DinG,WYL	2	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012831_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012831_1

977970-978075

Orphan

Consensus_repeat	Method
TACATATGACCTGTGGGAGCAAAGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012831_1

>merge|NZ_CP012831|1|977970-978075|CRISPRCasFinder
TACATATGACCTGTGGGAGCAAAGCTGCTCCCACAGGCATTACATATAACCTGTGGGAGCAAAGCTGCTCCCACAAGGATTACACATGACCTGTGGGAGCAAAGCT

>NZ_CP012831|1|1|977970-978075|CRISPRCasFinder
TACATATGACCTGTGGGAGCAAAGCT	GCTCCCACAGGCATTACATATAACCTGTGGGAGCAAAGCTGCTCCCACAAGGAT
TACACATGACCTGTGGGAGCAAAGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012831.1\|WP_060738728.1\|983931_985110_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226346
NZ_CP012831.1\|WP_060738729.1\|985214_986135_-\|biotin-dependent-carboxyltransferase	unknown	unknown	gnl\|CDD\|214821
NZ_CP012831.1\|WP_060738723.1\|975154_976876_-\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	unknown	unknown	gnl\|CDD\|235089
NZ_CP012831.1\|WP_060738718.1\|966929_968240_-\|porin	unknown	unknown	gnl\|CDD\|226269
NZ_CP012831.1\|WP_060738724.1\|977006_977915_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP012831.1\|WP_060738717.1\|965663_966788_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|377314
NZ_CP012831.1\|WP_060738719.1\|968528_968765_-\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|379219
NZ_CP012831.1\|WP_003184225.1\|983051_983897_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP012831.1\|WP_060738715.1\|963043_963607_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182824
NZ_CP012831.1\|WP_060738721.1\|969562_970684_-\|beta-ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236037
NZ_CP012831.1\|WP_053120124.1\|980611_981586_-\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273465
NZ_CP012831.1\|WP_060738732.1\|987649_988936_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP012831.1\|WP_060738730.1\|986131_986836_-\|5-oxoprolinase-subunit-PxpB	unknown	unknown	gnl\|CDD\|214820
NZ_CP012831.1\|WP_060738725.1\|978116_978980_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP012831.1\|WP_060738716.1\|963691_965524_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP012831.1\|WP_060738726.1\|979319_980258_-\|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|380241
NZ_CP012831.1\|WP_060738722.1\|971013_974925_-\|ATP-dependent-RNA-helicase-HrpA	unknown	unknown	gnl\|CDD\|273900
NZ_CP012831.1\|WP_060738731.1\|986832_987585_-\|LamB/YcsF-family-protein	unknown	unknown	gnl\|CDD\|235446
NZ_CP012831.1\|WP_060738720.1\|968758_969370_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP012831.1\|WP_060738727.1\|981733_982810_+\|DUF748-domain-containing-protein	unknown	unknown	gnl\|CDD\|377502

Protein	Function_ID	Function_description	E-value
NZ_CP012831.1\|WP_060738728.1\|983931_985110_+\|VWA-domain-containing-protein	gnl\|CDD\|226346	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP012831.1\|WP_060738729.1\|985214_986135_-\|biotin-dependent-carboxyltransferase	gnl\|CDD\|214821	smart00797, AHS2, Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).	5.80391e-108
NZ_CP012831.1\|WP_060738723.1\|975154_976876_-\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	gnl\|CDD\|235089	PRK02946, aceK, bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated.	0
NZ_CP012831.1\|WP_060738718.1\|966929_968240_-\|porin	gnl\|CDD\|226269	COG3746, OprP, Phosphate-selective porin [Inorganic ion transport and metabolism].	1.84508e-148
NZ_CP012831.1\|WP_060738724.1\|977006_977915_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	7.68246e-18
NZ_CP012831.1\|WP_060738717.1\|965663_966788_-\|N-acetyltransferase	gnl\|CDD\|377314	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition. FemAB_like is a family of both baterial and Viridiplantae proteins with responsibility for building interpeptide bridges in peptidoglycan. Such a function is feasible for bacteria but less likely for the plant members of this family. Perhaps the plant-members are using homologous proteins to recognize bacterial peptidoglcans as part of their innate immune system.	0
NZ_CP012831.1\|WP_060738719.1\|968528_968765_-\|anti-sigma-factor	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	1.92415e-07
NZ_CP012831.1\|WP_003184225.1\|983051_983897_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.12341e-50
NZ_CP012831.1\|WP_060738715.1\|963043_963607_+\|peptidylprolyl-isomerase	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	3.84009e-88
NZ_CP012831.1\|WP_060738721.1\|969562_970684_-\|beta-ketoacyl-ACP-synthase-III	gnl\|CDD\|236037	PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed.	0
NZ_CP012831.1\|WP_053120124.1\|980611_981586_-\|cysteine-synthase-A	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	3.14036e-167
NZ_CP012831.1\|WP_060738732.1\|987649_988936_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.04517e-159
NZ_CP012831.1\|WP_060738730.1\|986131_986836_-\|5-oxoprolinase-subunit-PxpB	gnl\|CDD\|214820	smart00796, AHS1, Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).	1.85148e-80
NZ_CP012831.1\|WP_060738725.1\|978116_978980_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.27599e-09
NZ_CP012831.1\|WP_060738716.1\|963691_965524_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.83374e-152
NZ_CP012831.1\|WP_060738726.1\|979319_980258_-\|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein	gnl\|CDD\|380241	NF033391, lipid_A_LpxO, lipid A hydroxylase LpxO. Members of this family are LpxO, an enzyme that modifies one of the lipid chains in lipid A by hydroxylation, with resulting changes in resistance to the host immune response and to the antibiotic colistin. This family, as built, includes LpxO1 from Pseudomonas aeruginosa, but not its paralog LpxO2.	3.37827e-151
NZ_CP012831.1\|WP_060738722.1\|971013_974925_-\|ATP-dependent-RNA-helicase-HrpA	gnl\|CDD\|273900	TIGR01967, ATP-dependent_RNA_helicase_HrpA, RNA helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. The HrpA/B homolog from Borrelia is 500 amino acids shorter but appears to be derived from HrpA rather than HrpB. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP012831.1\|WP_060738731.1\|986832_987585_-\|LamB/YcsF-family-protein	gnl\|CDD\|235446	PRK05406, PRK05406, 5-oxoprolinase subunit PxpA.	4.19684e-137
NZ_CP012831.1\|WP_060738720.1\|968758_969370_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.00024e-30
NZ_CP012831.1\|WP_060738727.1\|981733_982810_+\|DUF748-domain-containing-protein	gnl\|CDD\|377502	pfam05359, DUF748, Domain of Unknown Function (DUF748).	1.51756e-10

>NZ_CP012831.1|WP_060738724.1|977006_977915_+|EamA-family-transporter
MNLVDILRLLSLAAIWGASFLFMRIIAPVIGTLPTAFFRVSIAFVGLLVILALMRVNWNFRGKLKVVMVLGLINSGIPATFYSLAAQVLPAGYSAIFNATTPLMGVLIGGLFFSEQLTLAKVSGVFLGLLGVGILTRAGPVAFDLQLLMGALACLLATTCYGFAGFLTRRWLDHQGGLDSRLSALGSMFGATVFLLPLFGYSVISQPPASWGGWSVWLSLLGLGLVCTALAYILYFRLLSSIGPVKSMTVTFLIPPFGVLWGALLLDEPLGMAHLYGGVLIAAALWLVLKPGVVKPAEASAR
>NZ_CP012831.1|WP_060738723.1|975154_976876_-|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase
MLQPWPALEIARSILDGFDDYREHFRQITDGARARFEQALWLEAQAASAARINLYEEKVFETVARLHKAFDDETLMDVGCWPLVKSAYISLIDLRFDDELSETWYNSIFCGLFSHDLISDGTMFIHTTRPSLRRARAAQTRTYKPQGQLDRMLASVFADYRFSEDYGDLPGDLQRLETQLRENLPDWVCKDPELTVELFSSVLYRNKGAYLVGRIFTRDDQWPLVIPLLHREGRGIQIDALITDEAQVSIIFSFTRSYFMVDVPVPAEFIGFLKRILPGKHIAELYTSIGFYKHGKSEFYRALINHLANTDDQFIMAPGVRGMVMSVFTLPGFNTVFKIIKDRFSPSKNVDRATVIEKYRLVKSVDRVGRMADTQEFADFRFPLSKFEPACLEELLEVAPSTVSVEGETVLIRHCWTERRMTPLNLYLENANPDQVREALEDYGLAIKQLAAANIFPGDMLLKNFGVTRHGRVVFYDYDEICFLTEANFRHIPEPRTPEDEMASEPWYSIGPLDVFPEEFPPFLFADAGQRKLFDQLHGELYNADYWKSLQEAIRAGKVIDVFPYRRKDLDNE
>NZ_CP012831.1|WP_060738722.1|971013_974925_-|ATP-dependent-RNA-helicase-HrpA
MTDQAPAIDKLLKNLDHAMLADRHRLRRQLLELRKTPDEAKLTQWVARMQASCDQVLARKASLPVIRYDDNLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQYGLIGHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQNDRYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAPIVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDVLVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAETSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYSEEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELSAVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQQAADQAHAQWKDPDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSHRQLSLICRDMQLSLNKESADYPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSGLGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLGANTRLLEQLDELEAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLAREASEVTATQYPDTLRVGDLTLPLSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGMIEAKCIALVRNLPKALRKNFVPVPDFVKAALQRITFAEGSLPQSLGRELLRMTGARVSDEAWAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQEPVEAKIFAPVAEKTQQKIAGLSMTVYPALVEEGGVVKEGRFPTPAEAEFQHRRALQRLLMQQLAESAKFLRGKLPGLTELGLLYRDLGRIDGLVEDILLASLDSCVLEGEASLPRDGAALAALAERKRGGWTEHAERLAKLTLDILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGFVRETPHQWLKELPRYLKAIEQRFEKLGSQVQKDRVWSGELSNLWAQYQARASKHAQEGKRDPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLGKQWGLVEG
>NZ_CP012831.1|WP_060738721.1|969562_970684_-|beta-ketoacyl-ACP-synthase-III
MHNVVISGTGLYTPANSISNEELVQSFNTYVAQFNADNADAIERGEVEALTESNAAFIEKASGIKSRFVMDKDGILDPQRMTPRLPERSNDEWSVLCEMAIGAAKQALERAGRTVADIDGVIVACSNLQRAYPAIAIEVQEALGIEGFGFDMNVACSSATFGIQAAANSVQLGQARAILMVNPEVCTGHLNFRDRDSHFIFGDAATAVIIERADLATSPYQFDVVSTKLLTKFSNNIRNNFGFLNRAAQEGIGSRDKLFVQEGRKVFRDVCPMVAELIGTHLEENQLNVGDVKRFWLHQANLSMNHLIVRKLLGREATEAEAPVILDRYANTSSAGSVIAFHKYQDDLPSGSVAVLSSFGAGYSIGSVILRKH
>NZ_CP012831.1|WP_060738720.1|968758_969370_-|RNA-polymerase-sigma-factor
MTVTDDTLLLQRLLAGEQQAYRELVSAYQSPMRAVAYAIVGSRHVDEVVQDAWLSVVRNLSGFQGRSSLKTWLLTITANAAKGRYKQNRREVLLDDLPAPHGTLGDDRFAADGHWLLAPFAWHQDTPEALLTMSELRDCLEHTLLSLSELQGSVLTLREQQDLELDEICNLLGISLSNVRVLLHRARLKVFATVEHFEETGEC
>NZ_CP012831.1|WP_060738719.1|968528_968765_-|anti-sigma-factor
MLTCKEQVARSSDFLDGQLSFRERLMVRHHLMFCPNCRRFIRQMRLMQATLKKLPQPPIPDLDQLAEKLAAERRKNIR
>NZ_CP012831.1|WP_060738718.1|966929_968240_-|porin
MIRKHFAGVAASALAMAVTAQAFAGTVTTDGADIVVKTKGGLEVATTDKEFSFKLGGRLQADYSQFDGIYTDNGKSADAAYIRRAFLELSGVLYTDWAYTINYDMSHNSGDSDNGYFDEASLAYNGFKPVSIKVGRFDPDFGLEKATSSKWVTAPERNAAYDLIDWANSHQNGLGIQASSTFADSFYASAGVFSKDTDDTDGDSVKQVNGRFVFAPMHEAGNVLHFGLNVASRDVSDTAFDARYRSRLGMRGVETLGGNDAGPNGNRPVLGGANNSPAGSYDTDTAFGLEAAFAMGPASIQGEYISRKTKADSDAFEDLKGHGFYVQGAYTITGESRGYKVGKFDAIKPQNKSIGAWEVFYRFDSMTVEDDNITTASATREVGDAEAKVHNLGVNWYANEAVKITGAYVKAKTDKVTNANGDDDGDGFVVRAQYVF
>NZ_CP012831.1|WP_060738717.1|965663_966788_-|N-acetyltransferase
MPLHVLDSLSAIAPHEWDALVPANQPFLRHAFLGTLEDSASLGPQSGWQAEHLLHIENGQLLAALPSYRKWHSYGEYVFDHGWADACARAGIDYYPKLLTAVPFSPVSGPRLLAARVEDGLELLDSVPGYLEIEGLSSAHINFTDAFTDAALAGQEGWLQRIGCQYHWQNRGYRDFQDFLDALSSRKRKQMRKEREQVAGQGIAFDWLEGHQLDEAQWDFVYACYANTYAIRRQAPYLTRTFFSLLAERMPEAIRVVLAKQGSRPVAMAFSLVGGDSFYGRYWGCLAEFDRLHFETCFYQGMDYAIAHGLQRFDAGAQGEHKLIRGFEPVITRSWHYLRHPGLKAAVADFLVREQEGVLAYAEEARTALPYRQG
>NZ_CP012831.1|WP_060738716.1|963691_965524_+|ABC-transporter-ATP-binding-protein
MVFRRFETLIDIFRDAPSSAPPNRVLPFYTYYLKQVWPSFVVLLVVGLIGALIEVALFSYLSRIIDLTQGTPNVDFFKVHGLELAWMAVVALVFRPIFVALHDLLVHQTLSPGMTSLIRWQNHSYVLKQSLNFFQNDFAGRIAQRIMQTGNSLRDSAVQAVDALWHVLIYAVSSLVLFAEADWRLMIPLLMWIAAYIGALCYFVPRVKERSVVSSDARSKLMGRIVDGYTNITTLKLFAHTNFEQQYAREAIQEQTEKAQLAGRVVTSMDVVITSMNGLLIVGTTALALWLWTQSLISVGAIALATGLVIRIVNMSGWIMWVVNGIFENIGMVQDGLQTIAQPVSVTDRDQAKPLAVARGEVRFEHVDFHYGKKSGVIGDLNLTIEPGEKIGLIGPSGAGKSTLVNLLLRLYDVQGGHILIDGQDIAEVGQESLRERIGMITQDTSLLHRSIRDNLLYGKPDATDAQLWEAVHKARADEFIPLLSDAEGRTGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILIMDEATSALDSEVEAAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLENGRIAETGSHTELLAHGGLYARLWQHQTGGFVGID
>NZ_CP012831.1|WP_060738715.1|963043_963607_+|peptidylprolyl-isomerase
MLKKIALAAGTALFAANLMAATPAKAPHVLLETTNGQIEIELDPVKAPISTKNFLEYVDSGFYNNTIFHRVIPGFMAQGGGFTAQMQQKDTKAPIKNEASNGLHNVRGTLSMARTSNPDSATSQFFINVADNAFLDPGRDAGYAVFAKVVKGMDVVDIIVNSQTTTKQGMQNVPIDPVLIKSAKRID
>NZ_CP012831.1|WP_060738725.1|978116_978980_-|DMT-family-transporter
MFSLSKNALLAAASTSLFVLLWSSGAIFSKLGLAHASPFAFLLIRFAIALFALVLLIPMLKFKLPKTGKPMLYAVTTGLVLLGAYQIFYLLALQMNVTPGVMATLMGVQPILTVVLMERQRSWSRMFGLVLGLVGLVMVVYQGIGLAGMSLAGMVCGLLALVSMTAGSIMQKRITDNPLGTLPVQYLAGLVLCAVFVPFQPFHFEYSTGFFVPVLWMALVVSVLATLLLYRLIARGNLVNVTSLFYLVPAVTAIMDYLVFGNRLALLSLLGMVLIIVGLVFVFRKSR
>NZ_CP012831.1|WP_060738726.1|979319_980258_-|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein
MTVSFVAKASVLLLFLGSTLYVHLRGKARLPVLRQFVNHSALFAPYNALMYLFSGVPSKPYLDRSKFPELDVLKDNWQIIRDEAMHLFDEGYIRAAEKNNDAGFGSFFKKGWKRFYLKWYDKPLPSAELLCPRTVELVSRIPNIRGAMFALLPGGSHLNPHRDPFAGSLRYHLGLSTPNSDDCRIFVDGQIYAWRDGEDVMFDETYVHWVKNETPQTRVILFCDVERPLKSRLMTRLNRSISAFLGRATAPQNLEDEHVGGINRAYAWSKSFSDGISGQVKQFKRKHPKAYRVMRPVLAVAVLTALGYWLFV
>NZ_CP012831.1|WP_053120124.1|980611_981586_-|cysteine-synthase-A
MSRIFADNAHSIGNTPLVQINRIAPRGVTILAKIEGRNPGYSVKCRIGANMIWDAESSGKLKPGMTIVEPTSGNTGIGLAFVAAARGYKLMLTMPASMSIERRKVLKALGAELVLTEPAKGMKGAIEKAAEILASDPSKYFMPQQFDNPANPAIHEKTTGPEIWNDTDGAVDVLVAGVGTGGTITGVSRYIKNTCGKPILSVAVEPEVSPVITQAMAGHEIKPSPHKIQGIGAGFVPKNLDLSIVDLVERVTDDESKAMALRLMQEEGILCGISCGAAMAVAVRLAEKPEMQGKTIVVILPDSGERYLSSMLFSDLFTEQETQQ
>NZ_CP012831.1|WP_060738727.1|981733_982810_+|DUF748-domain-containing-protein
MKRRYRWPLWVFATLVAVLVALHFALPYLVRDYLNDKLANMGDYRGQITDVDLALWRGAYRINGLEIVKVDGKVPVPFVSAPLVDLSVSWHSLWYDHAVVAEVEFTRPEVNFVDGGANRQNSQTGRGTNWREQLGKLLPITFNEVRIRDGKVTFRNFNSKPPVNLRATDVNASFYNLTNVVDTEGKRDARFEGKALVAEHAPLEMQATFDPLSNFEDFDFRLRATNIELKRLNDFAAAYGKFDFNAGHGDLVVEAEADNARLRGYIKPLLRDVDVFDWQQDVENKNKNIFRSVWEALVGTGETALKNQRKNQFATRVELSGNVHQQDISAFEAFLQILRNGFVQAFNARYEQPPPSTE
>NZ_CP012831.1|WP_003184225.1|983051_983897_+|MoxR-family-ATPase
MKFEGTSAYVATDDLKLAVNAAITLERPLLVKGEPGTGKTMLAEQLAESFGARLITWHIKSTTKAHQGLYEYDAVSRLRDSQLGVDKVHDVRNYLKKGKLWEAFESEERVILLIDEIDKADIEFPNDLLQELDKMEFYVYETDETIKAKQRPIIIITSNNEKELPDAFLRRCFFHYIAFPDRVTLQKIVDVHYPDIKKDLVSEALDVFFDVRKVPGLKKKPSTSELVDWLKLLMADNIGEAVLRERDPTKAIPPLAGALVKNEQDVQLLERLAFMSRRGTR
>NZ_CP012831.1|WP_060738728.1|983931_985110_+|VWA-domain-containing-protein
MLLNLFNEMRAAKVPVSVRELLDLINALKQRVIFADMDEFYYLSRAILVKDERHFDKFDRAFAAYFNGLGKLDDHLQALIPEDWLRKEFERSLTDEERAQIQSLGGLDKLIEEFKKRLEEQKERHAGGNKWIGTGGTSPFGSGGFNPEGIRVGDAGKRQGKAVKVWDQREYKNLDDQVELGTRNIKIALRRLRKFARQGAAEELDIDGTIDHTARDAGLLNIQMRPERRNTVKLLLLFDIGGSMDAHVKICEELFSACKTEFKHLEYFYFHNFVYESVWKNNLRRTSERTSTQDLLHKYGADYKVIFIGDAAMAPYEITQAGGSVEHWNEEAGYVWMQRFMEKYKKLIWINPYPKDTWGYTASTNIVRELVEDRMYPLTLRGLEEGMRFLSK
>NZ_CP012831.1|WP_060738729.1|985214_986135_-|biotin-dependent-carboxyltransferase
MSRLLIEASTPLCLLQDAGRFGVRHLGVTQGGAADWLSMAWANWMLGNGLDAAVVEITLGGFTVVAEEDCVLALAGADLGARIDGQGVASWRFFSLRKGQVLALTQPVLGARAYLAAPGGFNAPAVLGSRATVVREELGGLDGRGRALSRGAHLSYSGTATPRPMPHTRIPDFQQAQPLDLILGAQNGAFSGQSLFDAFNTPWTLDSRADRMGMRLLGTALEYQGAAMISEGIPLGAVQVPPDGQPIVLLNDRQTIGGYPRLGALTPLALARLAQCLPGAQVRLRPVVQEVAHRQQVECLRSFLDR
>NZ_CP012831.1|WP_060738730.1|986131_986836_-|5-oxoprolinase-subunit-PxpB
MKPRLEVVALDCLMVRLFDEIAEANMPWMLAASERLRAVFAEHLIDLVPSYTTLMVHYDLLALDPAQARELIGEALHDLSPDARSVGQCHVLPVWYDLSVGPELALLASRSGLTVAQVIRRHSEREYQVFALGFAPGFAFMGLVDEALAAPRLDTPRKRVAAGSVGIAERQTAAYPVVSPGGWNLIGRTPAKLFDRERDGYSLMQPGDTVRFAPVDHAEFIALGGDDTPLEAQA
>NZ_CP012831.1|WP_060738731.1|986832_987585_-|LamB/YcsF-family-protein
MNRLLLNCDIGESFGSWTMGLDAEVMPFIDCANIACGFHAGDPSIMRKTVSLALSHGVRIGAHPAYQDLAGFGRRSMAYGAQELQDLLHYQIGALDGICRAQGGQVSYVKPHGAMYNDMMANPAQLRAVIQAVAAYDRQLPLMLMATRDNSAAQALGDEYGLTLWFEVFADRAYDSAGRLVSRQAPGAVHHDPEVIIGQALTIARGDALTASDGSALHLKANTLCVHGDNASSVAAVQRIREALDRQRAP
>NZ_CP012831.1|WP_060738732.1|987649_988936_-|MFS-transporter
MSAPDTLGVPQPQARSGPFDWYRNINQQERRTFWSCKIGYALDGMDTQMLSFVVPTLIAMWGITTGQAGLIHTSTLIASAIGGWVAGILSDRIGRVRTLQLTVLWFAFFTFLCGFAQNYEQLLIARTLMGFGFGGEWTAGAVLMGEVIRAKDRGKAVGMVQSGWALGWGMTAILYALLFSVLPPEDAWRALFILGIVPAVFVIFVRRLVKDPEVYNQTKARLTPENPAKFYEIFAPGILFTTLRASLLTTGALGGYYAITSWLPTFLKNERGLSVLSTGGYLAMVIVGSYVGYVISAYLSDILGRKKNFVLYAVGSFTIVLLYTQVPVSNNVMLWLGFPLGFFASGMFSGMGSFLTELFPTRIRGSGQGFCYNIGRAVAALFPLLIGILSQKVPLSVGIGAFAAVSYGVVILAALSLPETQGKQLEAE

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Crispr_ID: NZ_CP012831_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012831_2

1101732-1101825

Orphan

Consensus_repeat	Method
TCGCGAGCAAGCTCGCTCCCACA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP012831_2

>merge|NZ_CP012831|2|1101732-1101825|CRISPRCasFinder
TCGCGAGCAAGCTCGCTCCCACATTGGATCGGAGTCCAGATGCCAGAATCAGGTCGGCTGTCAGGCCGCCATCGCGAGTAAGCTCGCTCCCACA

>NZ_CP012831|2|2|1101732-1101825|CRISPRCasFinder
TCGCGAGCAAGCTCGCTCCCACA	TTGGATCGGAGTCCAGATGCCAGAATCAGGTCGGCTGTCAGGCCGCCA
TCGCGAGTAAGCTCGCTCCCACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012831.1\|WP_060738820.1\|1104778_1106143_-\|3-carboxy-cis,cis-muconate-cycloisomerase	unknown	unknown	gnl\|CDD\|181627
NZ_CP012831.1\|WP_060738810.1\|1088705_1089497_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP012831.1\|WP_060738823.1\|1108386_1109091_-\|protocatechuate-3,4-dioxygenase-subunit-beta	unknown	unknown	gnl\|CDD\|239547
NZ_CP012831.1\|WP_060738816.1\|1096044_1099209_+\|efflux-RND-transporter-permease-subunit-EmhB	unknown	unknown	gnl\|CDD\|273335
NZ_CP012831.1\|WP_060738811.1\|1089617_1090202_-\|DUF479-domain-containing-protein	unknown	unknown	gnl\|CDD\|225666
NZ_CP012831.1\|WP_060738821.1\|1106188_1107487_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|182433
NZ_CP012831.1\|WP_018607025.1\|1090681_1091848_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP012831.1\|WP_060738817.1\|1102087_1103341_+\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NZ_CP012831.1\|WP_060738812.1\|1091880_1092930_+\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NZ_CP012831.1\|WP_053182625.1\|1110330_1111110_-\|CoA-transferase-subunit-beta	unknown	unknown	gnl\|CDD\|224968
NZ_CP012831.1\|WP_060738818.1\|1103547_1103940_-\|4-carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|131478
NZ_CP012831.1\|WP_060738815.1\|1094883_1096041_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|380145
NZ_CP012831.1\|WP_060738819.1\|1103950_1104766_-\|3-oxoadipate-enol-lactonase	unknown	unknown	gnl\|CDD\|131480
NZ_CP012831.1\|WP_060738824.1\|1109128_1110331_-\|3-oxoadipyl-CoA-thiolase	unknown	unknown	gnl\|CDD\|181624
NZ_CP012831.1\|WP_053119222.1\|1099205_1100663_+\|AdeC/AdeK/OprM-family-multidrug-efflux-complex-outer-membrane-factor	unknown	unknown	gnl\|CDD\|273830
NZ_CP012831.1\|WP_060738822.1\|1107818_1108385_-\|protocatechuate-3,4-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239546
NZ_CP012831.1\|WP_060738825.1\|1111106_1111967_-\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NZ_CP012831.1\|WP_060738814.1\|1093981_1094614_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182632
NZ_CP012831.1\|WP_060738813.1\|1093252_1093768_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012831.1\|WP_003198672.1\|1090361_1090664_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713

Protein	Function_ID	Function_description	E-value
NZ_CP012831.1\|WP_060738820.1\|1104778_1106143_-\|3-carboxy-cis,cis-muconate-cycloisomerase	gnl\|CDD\|181627	PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional.	0
NZ_CP012831.1\|WP_060738810.1\|1088705_1089497_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	5.79785e-34
NZ_CP012831.1\|WP_060738823.1\|1108386_1109091_-\|protocatechuate-3,4-dioxygenase-subunit-beta	gnl\|CDD\|239547	cd03464, 3,4-PCD_beta, Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.	2.5907e-135
NZ_CP012831.1\|WP_060738816.1\|1096044_1099209_+\|efflux-RND-transporter-permease-subunit-EmhB	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP012831.1\|WP_060738811.1\|1089617_1090202_-\|DUF479-domain-containing-protein	gnl\|CDD\|225666	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown].	6.02157e-73
NZ_CP012831.1\|WP_060738821.1\|1106188_1107487_-\|MFS-transporter	gnl\|CDD\|182433	PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.	0
NZ_CP012831.1\|WP_018607025.1\|1090681_1091848_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	5.9916e-100
NZ_CP012831.1\|WP_060738817.1\|1102087_1103341_+\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	0
NZ_CP012831.1\|WP_060738812.1\|1091880_1092930_+\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0
NZ_CP012831.1\|WP_053182625.1\|1110330_1111110_-\|CoA-transferase-subunit-beta	gnl\|CDD\|224968	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism].	1.46687e-75
NZ_CP012831.1\|WP_060738818.1\|1103547_1103940_-\|4-carboxymuconolactone-decarboxylase	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	2.23443e-67
NZ_CP012831.1\|WP_060738815.1\|1094883_1096041_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|380145	NF000247, MexA, MexA family multidrug efflux RND transporter periplasmic adaptor subunit.	2.10543e-158
NZ_CP012831.1\|WP_060738819.1\|1103950_1104766_-\|3-oxoadipate-enol-lactonase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	1.63449e-120
NZ_CP012831.1\|WP_060738824.1\|1109128_1110331_-\|3-oxoadipyl-CoA-thiolase	gnl\|CDD\|181624	PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.	0
NZ_CP012831.1\|WP_053119222.1\|1099205_1100663_+\|AdeC/AdeK/OprM-family-multidrug-efflux-complex-outer-membrane-factor	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	5.15047e-136
NZ_CP012831.1\|WP_060738822.1\|1107818_1108385_-\|protocatechuate-3,4-dioxygenase-subunit-alpha	gnl\|CDD\|239546	cd03463, 3,4-PCD_alpha, Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.	4.60079e-95
NZ_CP012831.1\|WP_060738825.1\|1111106_1111967_-\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	4.6246e-81
NZ_CP012831.1\|WP_060738814.1\|1093981_1094614_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|182632	PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR; Provisional.	7.59435e-79
NZ_CP012831.1\|WP_003198672.1\|1090361_1090664_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	5.42874e-17

>NZ_CP012831.1|WP_053119222.1|1099205_1100663_+|AdeC/AdeK/OprM-family-multidrug-efflux-complex-outer-membrane-factor
MSKSLLSLTIAAVVLSGCSLIPDYQRPEAPVAAQYPQGPAYEAANAPGQAAAEQGWKQFFHDPALQQLIQVALENNRDLRVAALNIDAYAAQYRIQRADLFPAVSATGSGSRQRVPARASQTGEAAISSSYSATLGISAYELDLFGRVRSLSEQALQSYFATEEARRSTQISLVANVANAYLTWQADKELLKLTQETLGAYEQSFKLTSRSAEVGVASALDLSQARTAVENARVQLARYTRQVAQDENSLTLLLGTGLPANLNSQPLSDDLLSEVPAGLPSDLLQRRPDILQAERNLLAANANIGAARAAFFPSISLTANAGTLSPDLSGLFKGGSGTWTFAPQINLPIFNAGSLRASLDYAKIQKDINVAQYEKSIQTAFQEVSDGLAARQTYNEQLQAQTDFVAANQDYYRLAERRYRIGVDSNLTFLDAQRQLFSAQQSLITDRLAQLTSEVNLYKALGGGWNAETGKNEPVKEEAPKMKLF
>NZ_CP012831.1|WP_060738816.1|1096044_1099209_+|efflux-RND-transporter-permease-subunit-EmhB
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQEVQQQGIRVTKSVRNFLMVIGVVSRDGSMTREDLSNYIVSNMQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNNFNLTPVDVSTAISAQNVQIASGQLGGLPAMPGQQLNATIIGKTRLQTAEQFKAILLKVNPDGSQVRVGDVADVALGGENYSINAQFNGLPASGLAVRLATGANALDTAKALRKTVDDLKPFFPQGLEVVFPYDTTPVVSESIKGVVETLVEAVVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRSFDRGVRSYERGVGNMLKHKAPYLLAYVIIVVGMVWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDNMREFLLRPSKDGGEGDGVASVFTVTGFNFAGRGQSSGLAFIMLKPWEERNADNTVFKIAGRAQQHFFTFRDAMVFAFAPPAVMELGNATGFDVFLQDRAGIGHDKLMEARNQFLGMASQSKVLAQVRPNGLNDEPQYQLEIDDEKASALGITLSEINNTLSIALGSNYVNDFIDRGRVKRVYVQGQPNSRMSPEDLQKWYVRNSAGTMVPFSAFAKGEWVYGSPKLARYNGVEAMEILGTPAPGYSTGEAMAEVEAIAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWSIPIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQGRTLVEAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAIGTGVIGGMLTATILAIFWVPLFFVTVSSIGRRKNADQDDTPETSKEAGQ
>NZ_CP012831.1|WP_060738815.1|1094883_1096041_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MQFKPAVTALVTAIALASLLSGCKKEEAAPAPPPPQVGVVTLKTQPFTLTSELPGRTSAFRVAEVRPQVNGIILKRLFKEGADVKAGQQLYQIDPAVYEATLKSAEANLRSTKSIADRYKQLVDEQAVSRQEYDTAVANRLESEANLQTAQINVRYTKVYAPISGRIGRSSVTEGALVSNGQADALATIQQLDPIYVDVTQSSVELLQLRRELESGRLQKAGENAAMVKLTLEDGSQYPHEGKLEFSEVSVDQTTGSVTLRAVFPNPDHTLLPGMFVHAQLQAGVNSAAILAPQQGVTRDLKGAPTALVVGADNKVELRQLKASRTVGSQWLIEDGLKAGDRLITEGLQFVRPGVEVKATEATNVGTKNPAPAKAADKAAGGKGE
>NZ_CP012831.1|WP_060738814.1|1093981_1094614_-|TetR-family-transcriptional-regulator
MVRRTKEEAQETRSQIVEAAEKAFFERGVARTTLADIATLAGVTRGAIYWHFSNKADLLQAMLDTLHEPLDDLARASENEEELDPLGCTRKLLVQLFQQVALDPKTRRINEILFHKCEFTDEMCDLRQQRRQVSLDCNVRIALSLRNAMNRGQLPADLEPERAAIALHAYVDGILYQWLLAPDSFPLAGEAERWVDIGLDMLRLSPSLRK
>NZ_CP012831.1|WP_060738813.1|1093252_1093768_+|hypothetical-protein
MNILKNFILALLLGPAMVAHSQANTEVTVEIANNTRGTLKMNNLLTDPPQAEDFSLSAHDIDPTSSYRFHIEHFRDYTYPGAGWRPTLKKVKPVELVLNYEMSHFNFECQMHTRLQVSIVPGVLEPSYKPTWKSRTTYTGNGEYTCRSEISRKMLEPPFNYTVRLIIEPGR
>NZ_CP012831.1|WP_060738812.1|1091880_1092930_+|alkene-reductase
MATIFDPIKLGDIELKNRIIMAPLTRCRADAGRVPNALMAEYYVQRASAGLILSEATSVTPMGVGYPDTPGIWSNDQVRGWANITKAIHGAGGKIFLQLWHVGRISHPSYLNGEAPVAPSAIQPKGHVSLVRPLADYPTPRALETAEIADIVDAYRVGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDQYGGSLENRARLLLEVTDAAIEVWGAGRVGVHLAPRADSHDMGDENRLETFSYVARELGKRGIAFICSREKEGDDSIGPQLKQAFGGPYIANERFTKDSANAWLAAGKADAVAFGVPFIANPDLPARLKANAPLNEPHPETFYGKGPVGYIDYPVM
>NZ_CP012831.1|WP_018607025.1|1090681_1091848_+|MFS-transporter
MPLSLLILALSAFAIGTTEFVIMGLLPDVAADLGVSIPGAGWLVTGYALGVAIGAPFMALATARLPRKAALVALMGIFIVGNLLCAIASDYNVLMFARVVTALCHGAFFGIGSVVAAGLVAPNKRASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVIALIGLIRFLPAKRDEEKLDMRSELVALKGAGLWLSLSMTALFSASVFTLFTYVAPLLGEVTGVSPRGVTWTLVLIGLGLTLGNIIGGKLADKSLANTLMGVFLTMAVVSTVLSWTSVALIPSEITLFLWATACFAAVPALQVNVVTFGKDAPNLVSTLNIGAFNIGNALGAWVGGSVIDHGLGLTSVPLAAGALAVLALLVTLITFRQGGNADLAPATH
>NZ_CP012831.1|WP_003198672.1|1090361_1090664_+|helix-turn-helix-transcriptional-regulator
MTLDLDEIIKALAHPVRRDILNWLKDPKVQFPEQLHNHEFGICAGQIDQRCGLSQSTVSAHLAVLQRAGLITSQKVGQWHFFKRNEEVIQQFLKQMSQEL
>NZ_CP012831.1|WP_060738811.1|1089617_1090202_-|DUF479-domain-containing-protein
MNYLAHLHLGGPGREQLLGSLYGDFVKGPLQGQYDPQIEAAIALHRRIDMYTDRHPLVGIALSRFSTVRRRYAGIVLDVFFDHCLARDWALYGEGPLVDFTSRVYQVLRTEPQLPGRLAQIAPYMAADDWLGSYQEFDVLGQVLRGISRRLSRPEELAGAMAELIELYEPLSEDFRLFYPQLQDFAQNQVTPQD
>NZ_CP012831.1|WP_060738810.1|1088705_1089497_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MSRLRVYARIARVLLVVTLGLSMASVFGLFERLGVANSMVRRQRWSRFFMARLSHALPFSVTVHGQLPQRPMLWVSNHVSWTDIPLLGMLTPMSFLSKAEVRTWPVAGWLAAKAGSLFIRRGSGDSQLIRKQMSRHLEQAHPLLMFPEGTTTDGRSLRTFHGRLLSAAIDADVALQPVAIRYLRDGEPDSLAPFIGDDDLLSHLMRLFANDRGDVHIHLLEPIACHGQERAALAFQAQQAVHKALFGTIPEKQQAPMRPAIAA
>NZ_CP012831.1|WP_060738817.1|1102087_1103341_+|OprD-family-porin
MKPTQHLFPSLIAVALSGTALPVLAAESGFVEDAKATLNLRNFYFNRNFTNPNNAQGKAEEWTQSFILDAKSGFTQGTVGFGVDILGMYSVKLDGGRGTAGTQLLPVHDDGRPADDFGRLGVALKAKVSKTELKVGEWMPVLPILRSDDGRSLPQTFRGGQVTSTEINGLSLYGGQFRGNSPRNDASMEDMSMNGRGAFTSDRFNFGGGEYAFNEKRTQVGVWYAELSDIYQQQYFNLTHSQPIGDWTLGANLGYFIGKEDGSALAGDLDNKTAFAMLSAKYGGNTFYVGLQKVGGDDAWMRVNGTSGGTLANDSYNSSYDNAKEKSWQLRHDFNFAAVGVPGLTLMNRYISGDNVHTATVDDGKEWGRESELAYTVQSGALKSLNVKWRNSTMRRDYSTNEFDENRLIISYPISLL
>NZ_CP012831.1|WP_060738818.1|1103547_1103940_-|4-carboxymuconolactone-decarboxylase
MDEKQRYDEGMQVRRAVLGDAHVDRSLDALTEFNSEFQEMITRHAWGDIWTRPGLPRHTRSLITIAMLIGMNRAEELKLHLRAAANNGVSRSEIKEVIMQSAIYCGIPAANATFHLAESVWDELGVESRA
>NZ_CP012831.1|WP_060738819.1|1103950_1104766_-|3-oxoadipate-enol-lactonase
MGFVKLAEGDLNYCFDERRLDGTQDAPVLVLSNSLGTDLHMWDEQVAAFSEHFRVLRFDTRGHGQSLVTEGPYSIEQLGRDVLAMLDQLNIDKVHFCGLSMGGLIGQWLGINAGERLHKLVVCNTAAKIGDPSVWNPRIETVLRDGKDAMVALRDASIARWFTADFSEAHPAKVKKITDMLAATSPQGYAANCAAVRDADFREQLSLIRVPLLVIAGTEDAVTPPSGGHFILERVSGAEYAEFYAAHLSNVQAGAAFSTRVLDFLLDSSRV
>NZ_CP012831.1|WP_060738820.1|1104778_1106143_-|3-carboxy-cis,cis-muconate-cycloisomerase
MSERPGNQLFDAYFTARDMREVFCDAGRVQAMLDVEAALARAEARVGLIPQSAVASIEKACRAEFYDFSTLSEAIASAGNSAIPLVKALGKRIAAEDAEAERYVHLGATSQDVMDSGLVLQLRQALGLIEGELAQLAAILARQAERYATTPLAGRTWLQHATPVTLGMKIAGWLGAITRSRQRLKELKPRLLVLQFGGASGTLAALGEHALPVAEALAAELQLTLPEQPWHTQRDRLVEFGAVLGLIAGSLGKLGRDISLLMQTEAGEAFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFSAMPQEHERSLGLWHAEWETLPEICCLVSGALQQARLLAEGLEVDAARMARNLELTQGLVLAEAVSIVLAQRVGRDTAHHLLEQCCKRAVAEQRHLREVLGDEPQVTAQLSATEIDHLLDPAHYLGQAQTWVVRAVAEHLALNA
>NZ_CP012831.1|WP_060738821.1|1106188_1107487_-|MFS-transporter
MATPIISHYTGEERSKRIFAIVGASSGNLVEWFDFYVYAFCAIYFAPAFFPSDNPTVQLVNTAGVFAAGFLMRPIGGWIFGRVADRHGRKNSMMISVLMMCFGSLLIACLPTYKDIGVWAPVLLLFARLLQGLSVGGEYGTTATYMSEVALKGQRGFFASFQYVTLIGGQLLAVSLVVILQQFLNEDELRAYGWRIPFVVGAVAALISLFLRRSLKETSSKEMRENKDAGSIAALFRDHKAAFVTVLGYTAGGSLIFYTFTTYMQKYLVNTAGLHAKTASYIMTGALFLYMCMQPLFGMLADKIGRRNSMLWFGGLGALCTVPILLTLKSISSPFLAFILITLALAIVSFYTSISGLVKAEMFPPEVRALGVGLAYAVANAIFGGSAEYVALSLKAQGMENAFYWYVTVMMVVAFLFSLRLPKQPAYLHHDL
>NZ_CP012831.1|WP_060738822.1|1107818_1108385_-|protocatechuate-3,4-dioxygenase-subunit-alpha
MTLTATTSHTVGPYYHIGLTWLNREDLTVAETLGQRVAITGQVVDGNGQFVNDAMLEVWQANAAGKYAHPEDDQDKPLDPHFEGFGRVPVDAEGRFRFTTIKPGTVPGLAGTTQAPHLVVLVFARGLVKHLLTRIYFDGEQANETDPLLACVPEERRGTIVAKPDASGVYQWNVILQGTDAETVFFDY
>NZ_CP012831.1|WP_060738823.1|1108386_1109091_-|protocatechuate-3,4-dioxygenase-subunit-beta
MTDKPGYRRPQAGTQPEYLHPPYQSTNLRSPSKPLVFLPHSLSEITGPTVGADRVQEKDYDLTAQHAGEPLGERIIIHGRVLDEHGQPVPGILVEIWQANAAGRYNHDRDNHDAPLDPNFTGTGRTVTDADGWYQFQTIKPGAYPWGNHHNAWRPAHIHFSLFGPSILTRLVTQMYFPGDPLLEYDPIYNCVPDTSAKERLISSFDLEKTIPNYALGYRWDIVLRGRDATPMEK
>NZ_CP012831.1|WP_060738824.1|1109128_1110331_-|3-oxoadipyl-CoA-thiolase
MRDVYICDAIRTPIGRFGGGLSAVRADDLAAVPIKALMERNPSVDWNAVDEVFLGCANQAGEDNRNVARMALLLAGLPQSIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESMSRAPFVMGKADTAFSRNMKLEDTTIGWRFINPLMKAQYGVDAMPQTADNVADDYAVSRADQDAFALRSQQRTAAAQAAGFFAEEIVPVRIAHKKGETVVEQDEHPRADTTLETLSKLKPVNGPDKTVTAGNASGVNDGAAALILASAEAVKKHGLTPRGKVLGMASAGVAPRVMGIGPVPAVRKLTERLGLAVADFDVIELNEAFASQGLAVLRDLGLADDAPQVNPNGGAIALGHPLGMSGARLVMTALHHLEKTGGKKGLATMCVGVGQGLALAIERV
>NZ_CP012831.1|WP_053182625.1|1110330_1111110_-|CoA-transferase-subunit-beta
MTYSTNEMMTVAAARRLKNNAVCFVGIGLPSKAANLARLTSSPDVVLIYESGPIGAKPSVLPLSIGDGELAETADTVVPTGEIFRYWLQGGRIDVGFLGAAQVDRFGNINTTVVGDYHQPKVRLPGAGGAPEIAGSAKSVLIILKQSARSFVDKLDFITSVGHGEGGDSRKRLGLPGAGPVGIITDLCIMEPEAGSHEFVVTALHPGVTREQVIAATGWAIRFADQVQTTAEPTEVELRALRDLEARTAAAHGQAPGEA
>NZ_CP012831.1|WP_060738825.1|1111106_1111967_-|CoA-transferase-subunit-A
MAEILSLHDAVKQFVNDGDTVALEGFTHLIPTAAGHEIIRQGKKNLTLVRMTPDLIYDQLIGAGCARKLIFSWGGNPGVGSLHRLRDAVEKQWPHPLEIEEHSHADLANAYVAGASGLPFAVLRAYAGSDLPKVNPLIKSVTCPFTGEVLAAVPSVRPDITVIHAQKADRKGNVLLWGILGVQKEAALAAKRCIVTVEEIVDDLNAPMNACVLPTWALSAVCHVPGGAHPSYAHGYTERDNRFYQAWDPIARDRETFTAWINEYIHGTRDFSEFQARLAAASQVKP

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Crispr_ID: NZ_CP012831_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012831_3

1300444-1300545

Orphan

Consensus_repeat	Method
CTCCCACAGGGGAAACGCGGTCCCACCAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012831_3

>merge|NZ_CP012831|3|1300444-1300545|CRISPRCasFinder
CTCCCACAGGGGAAACGCGGTCCCACCAAGAATCAGGTCGGCTGTCAGGCCGCCTTCGCGAGCAAGCCCACTCCCACAGGGGAGACGCGGTCCCACCAAGAA

>NZ_CP012831|3|3|1300444-1300545|CRISPRCasFinder
CTCCCACAGGGGAAACGCGGTCCCACCAAGAA	TCAGGTCGGCTGTCAGGCCGCCTTCGCGAGCAAGCCCA
CTCCCACAGGGGAGACGCGGTCCCACCAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012831.1\|WP_030139464.1\|1303687_1304011_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|378771
NZ_CP012831.1\|WP_003184863.1\|1309141_1309615_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811
NZ_CP012831.1\|WP_060738983.1\|1308086_1309145_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP012831.1\|WP_060738973.1\|1293803_1294439_-\|phage-tail-protein-I	unknown	unknown	gnl\|CDD\|226820
NZ_CP012831.1\|WP_060738974.1\|1294435_1295431_-\|baseplate-J-protein	unknown	unknown	gnl\|CDD\|164963
NZ_CP012831.1\|WP_060743076.1\|1297336_1297981_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012831.1\|WP_060738980.1\|1305615_1306461_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|236782
NZ_CP012831.1\|WP_060738981.1\|1306672_1307350_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
NZ_CP012831.1\|WP_060738976.1\|1296386_1296899_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012831.1\|WP_081015322.1\|1298001_1298184_-\|Com-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|287133
NZ_CP012831.1\|WP_060738975.1\|1295771_1296383_-\|phage-baseplate-assembly-protein-V	unknown	unknown	gnl\|CDD\|368076
NZ_CP012831.1\|WP_047227588.1\|1304501_1305509_-\|RNA-polymerase-sigma-factor-RpoS	unknown	unknown	gnl\|CDD\|235548
NZ_CP012831.1\|WP_060738985.1\|1310512_1311625_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NZ_CP012831.1\|WP_060738982.1\|1307349_1308099_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP012831.1\|WP_060738978.1\|1299921_1300263_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012831.1\|WP_039594456.1\|1298650_1299385_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP012831.1\|WP_060738977.1\|1296935_1297286_-\|pyocin-R2,-holin	unknown	unknown	gnl\|CDD\|318333
NZ_CP012831.1\|WP_060738984.1\|1309658_1310504_-\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|178061
NZ_CP012831.1\|WP_018607976.1\|1295427_1295760_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226155
NZ_CP012831.1\|WP_060738979.1\|1300965_1303545_+\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444

Protein	Function_ID	Function_description	E-value
NZ_CP012831.1\|WP_030139464.1\|1303687_1304011_+\|ferredoxin-family-protein	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	7.57995e-22
NZ_CP012831.1\|WP_003184863.1\|1309141_1309615_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	8.07104e-102
NZ_CP012831.1\|WP_060738983.1\|1308086_1309145_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	5.94981e-164
NZ_CP012831.1\|WP_060738973.1\|1293803_1294439_-\|phage-tail-protein-I	gnl\|CDD\|226820	COG4385, gpI, Bacteriophage P2-related tail formation protein [General function prediction only].	3.72029e-30
NZ_CP012831.1\|WP_060738974.1\|1294435_1295431_-\|baseplate-J-protein	gnl\|CDD\|164963	PHA02568, J, baseplate assembly protein; Provisional.	1.43059e-91
NZ_CP012831.1\|WP_060738980.1\|1305615_1306461_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|236782	PRK10871, nlpD, murein hydrolase activator NlpD.	1.85913e-73
NZ_CP012831.1\|WP_060738981.1\|1306672_1307350_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	7.50094e-117
NZ_CP012831.1\|WP_081015322.1\|1298001_1298184_-\|Com-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|287133	pfam10122, Mu-like_Com, Mu-like prophage protein Com. Members of this family of proteins comprise the translational regulator of mom.	1.98923e-11
NZ_CP012831.1\|WP_060738975.1\|1295771_1296383_-\|phage-baseplate-assembly-protein-V	gnl\|CDD\|368076	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector. Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft.	2.20161e-26
NZ_CP012831.1\|WP_047227588.1\|1304501_1305509_-\|RNA-polymerase-sigma-factor-RpoS	gnl\|CDD\|235548	PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.	0
NZ_CP012831.1\|WP_060738985.1\|1310512_1311625_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NZ_CP012831.1\|WP_060738982.1\|1307349_1308099_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	2.62207e-134
NZ_CP012831.1\|WP_039594456.1\|1298650_1299385_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	5.078e-21
NZ_CP012831.1\|WP_060738977.1\|1296935_1297286_-\|pyocin-R2,-holin	gnl\|CDD\|318333	pfam16085, Phage_holin_3_5, Bacteriophage holin Hol, superfamily III. Phage_holin_6_2 is a family of holins classified as 1.E.20 in the TC database. The hol gene (PRF9) product (117 aas) of Pseudomonas aeruginosa PAO1 exhibits a hydrophobicity profile similar to holins of P2 and phiCTX phages with two peaks of hydrophobicity that might correspond to either one or two TMSs. Hol functions in conjunction with the lytic enzyme, Lys, a glycosyl hydrolase that breaks-up the murein in the bacterial cell-wall, causing lysis of the cell and hence entry of phage particles. Several members are annotated as pyocin R2_PP when encoded on the chromosome.	1.12834e-51
NZ_CP012831.1\|WP_060738984.1\|1309658_1310504_-\|S-formylglutathione-hydrolase	gnl\|CDD\|178061	PLN02442, PLN02442, S-formylglutathione hydrolase.	4.52384e-152
NZ_CP012831.1\|WP_018607976.1\|1295427_1295760_-\|hypothetical-protein	gnl\|CDD\|226155	COG3628, COG3628, Phage baseplate assembly protein W [General function prediction only].	1.03187e-06
NZ_CP012831.1\|WP_060738979.1\|1300965_1303545_+\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0

>NZ_CP012831.1|WP_060738978.1|1299921_1300263_+|hypothetical-protein
MPKNTPNPPDDHVSRNTKKLDDAATRALDYYLKPKADKETCDTPDTLFIIAPDIDAECLLANLSETLASANAMVSDLAFDLEGSRRHIALGVQQMIELGQLLANRALDVVEVR
>NZ_CP012831.1|WP_039594456.1|1298650_1299385_-|helix-turn-helix-transcriptional-regulator
MQKRNVSTVLRALLDQHGISPTELHRRTGVPQSTLSRILSGKIVDPSDKHISKIAEYFAVSTDQLRGRADVVPAGNVRRDEPHSELKDISLWDDETPVEEDEVSVPFLREVELAAGSGRFVIEESERSSLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGKCGIGDIVDGDLYAINHNGQLRVKQLYRLPTGIRLRSFNRDEHPDEDYTFQEMQDEQIVILGHVFWWGMYAR
>NZ_CP012831.1|WP_081015322.1|1298001_1298184_-|Com-family-DNA-binding-transcriptional-regulator
MLKDFRCGHCKRLLARVGENTELQIKCSRCGTLNHVKAVEPRVNAGERTACGIDPALRTQ
>NZ_CP012831.1|WP_060743076.1|1297336_1297981_-|hypothetical-protein
MKLLKRILLATAFLSSFVSLNTWADTAMSWNLARDMYLMIEAAPAGSPWSLMQNKSGVNVSANYTLFPTFKAGTCNGQPTTCWRDDATGAWISIPNANFTFTGSGTSFVFKQGDVATHPGTNSQSIFRWASPVTGNINVLGRVNDLHNACGDGIGWSLNLGDTVLQSGSLANGGSTTFMLSSVAVTPTSSLYLVIDRKANNSCDATSIDMLITR
>NZ_CP012831.1|WP_060738977.1|1296935_1297286_-|pyocin-R2,-holin
MTNEQQALLDMPIWLVIVLALVGGVSGEMWRADKEGARGWPLLRRVVLRSGACVVCGVSATMLLYALGMSIWSACALGCLTAMAGADVAIGLYERWVAKRIGVCEVPPRDLPPDQQ
>NZ_CP012831.1|WP_060738976.1|1296386_1296899_-|hypothetical-protein
MPALIEKPSQLFAAIAQTLRITYPTLKVGSPQEFDGTDDQPWVLIAIERDASGNRANDGRIAHVLTVSLQVVMAVPGWEACDLAGELKHLVVDNRWGLSGDQCDLPTEIDGLASTFIHEARAYSAWTLSFNQTLYLGPTLLEDPLGIPKFARTWEVSNIDDPDQYTALEG
>NZ_CP012831.1|WP_060738975.1|1295771_1296383_-|phage-baseplate-assembly-protein-V
MFDGLLRMHLGPIIERLAQMETELEDLHRRAESFCRIGVCQEVDAASNTCKVSHGGLLTPAIRFFNPSAGAQSESRIPSVGEQCLLLNHGGGESGGQAVALFGLNGGQFPPVSTQASLTRRLYQDGTENGYDHASHVLHWQNGPAAFSGSREALQLSIGPSRLAMTAEAIELQVGAVGIRLDASGVHLSGPVVDHQGRVISTA
>NZ_CP012831.1|WP_018607976.1|1295427_1295760_-|hypothetical-protein
MIGIDRNTGATVDDWLQFVQRATRALTTPLGTRQKRPLYGCALTQLLGQNLGDDLLILAQSHAAQAFYNPDNGIDDFEPQVIVASRQGAGLLLRFAGTWKNRKQTFEVVT
>NZ_CP012831.1|WP_060738974.1|1294435_1295431_-|baseplate-J-protein
MSMLIPGQNQLAEPAIVTVDAFEDLLAEFKTFVVEYVAARSPASAAKLVDSLENESELLTLALEAFCVRLQTHERKYNARIKQMLAWWATGTNLDARLADMGLERQLLDPGDPAAFPPIPPVYESDDDARLRYYLAPHAPAAGSRMQYRREIFTLGERPVVKVESASAGVVTVTYTFDPDGRAAQVKDGNARRTAPGQVTVTVLSREGDGTPSETLLDGVRQHFARPDVRPETDLVIVQGAQIKPYKIRVVAKINAGPDSGLTQVAAEQQLREYAEACHRLEGRVDPSWIDYTLHSAGAVQLQILEPLQPIVTTAFQAPYCTGVEVEVDTL
>NZ_CP012831.1|WP_060738973.1|1293803_1294439_-|phage-tail-protein-I
MSDDTPRLSLLPINSSPLERALDLGFARLLERIDPPFPELMNPAATPLAFLPYLAADRGVSEWSSAAPAVEKRLTVELAWPTARQAGTRKALENAAKGLQLMPEVRAWYEQTPPGPPYSFSVRAFTEQPYSEAIDARLDRRLAGAKSERDTLTVSVGLRAFGRHVIGAATLCGELTTVYPVVIEGLEASGQAFMAAGLYSVETSTIYPQGS
>NZ_CP012831.1|WP_060738979.1|1300965_1303545_+|DNA-mismatch-repair-protein-MutS
MNTAVNDLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGMAIPMCGIPYHAAEGYLAKLVKLGESVVICEQVGDPATSKGPVERQVVRIITPGTVSDEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERVNPVELLIPDDWPKDLPAEKRRGVRRRAPWDFERDSALKSLCQQFSTQDLKGFGCENLTLAIGAAGCLLAYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLLARQSSITCLLDRYRFEQLQPQLKEIGDIERILARIGLRNARPRDLARLRDALGALPELQVAMTDLEAPHLQQLARTTSTYPELAALLEKAIIDNPPAVIRDGGVLKTGYDAELDELQALSENAGQFLIDLEAREKARTGLANLKVGYNRIHGYFIELPSKQAEQAPADYVRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYEALLEDLISQLPPLQDTAGALAELDVLSNLAERALNLDLNCPRFVSEPCMRISQGRHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLAWAAAERLAHLRAYTLFATHYFELTVLPESQPLVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPSEVISRAREHLSRLETTSLPHEAPRLTKGKPAAPQQSDLFASLPHPVLDELAKLDLDDLSPRRALDLLYTLKTRI
>NZ_CP012831.1|WP_030139464.1|1303687_1304011_+|ferredoxin-family-protein
MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENFIELNAELADIWPNITEKKDALPDAEEWDGKTGKIADLER
>NZ_CP012831.1|WP_047227588.1|1304501_1305509_-|RNA-polymerase-sigma-factor-RpoS
MALSKEVPEFDIDDEVLLMETGIAMDSMSNDEGATPPSVRAKSRHSASLKQHKYIDYTRALDATQLYLNEIGFSPLLSPEEEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLREILEKNGLSSESLFQ
>NZ_CP012831.1|WP_060738980.1|1305615_1306461_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MSLTVIAQRMGITSFQRLVTGLVLSTLLVGCSSTPSSNVRVVDRNSATPQRPTVTTGQYVVRRGDTLFSIAFRYGWDYKALAARNNIPAPYTIHPGQTIRFDGRSGSTPTAVVTQSGSTASSSSKTTVIRRPAGSGTAVIPSVASKPAPAPMPPAGPAPTGWGWPSNGVLIGKFSSNGSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVIIKHSDTYVSAYGHNRRLLVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR
>NZ_CP012831.1|WP_060738981.1|1306672_1307350_-|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MAREQDDMMRRGIGMTSQRTRERLIQRLYEEGLSNAQVLEVIRRTPRHLFVDEALAHRAYEDTALPIGHNQTISQPYMVARMSELLLEAGPLDKVLEIGTGSGYQTAVLSQLVERVFSVERIKVLQDRAKERLVELNLRNVVFRWGDGWEGWPALAPYNGIIVTAVATDVPQALLDQLAPGGRLVIPVGAGEVQQLMLIVREEHGFSRHVLGAVRFVPLLNGPLA
>NZ_CP012831.1|WP_060738982.1|1307349_1308099_-|5'/3'-nucleotidase-SurE
MRILISNDDGVTAPGLAALYAALADFAECVVIAPDQDKSGASSSLTLDRPLHPCYLDNGFISLNGTPTDCVHLGINGLLERAPDMVVSGINLGANLGDDVLYSGTVAAALEGRFLGNTSFAFSFVSRQVDNLPTAAYFARKLVEAHGALDLPPRTVLNVNIPNLPLDHIRGIQLTRLGHRARAARPTHVVDPRGKAGYWIAAAGDAEDGGPGTDFHAVMQGYVSITPLQLDRTFNDAFRNLDGWLEGLR
>NZ_CP012831.1|WP_060738983.1|1308086_1309145_-|tRNA-pseudouridine(13)-synthase-TruD
MTELELLGPRAYGPSLGSAVLKATAEDFQVDEVLDIPLTGDGEHLWIWVEKRGLNTEEAARRIAKAAGVPLRTVSYAGLKDRQALTRQWFSVQLPGKADPDLSAAQNDTLKILKTARHRRKLQRGAHSANGFTLRLTQFKGDVAAIEARLQQIMRQGIPNYFGAQRFGHDGGNVADARAWAARKALPEQRNVRSRLLSTARSFLFNRVLAARVADGTWQQAQVGDLLAFTDSRSFFPAGEAECSDPRLAILDLHPTGPQWGEGPSPAAGATFELEQAIAEGEADLRDWLINAGMSHERRILRLPIGGLSWHYPQPDILQLEFVLPAGCFATVLVRELVDLVPVGQTDSPCVF
>NZ_CP012831.1|WP_003184863.1|1309141_1309615_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGYDVHRFAEGDFITLGGVRIAHGFGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRVLLRHVVSLIHAKGWKVGNVDNTIVAQAPKMAPHIEAMRQLIAEDLQVELDQVNVKATTTEKLGFVGREEGIAVHSVALLLRP
>NZ_CP012831.1|WP_060738984.1|1309658_1310504_-|S-formylglutathione-hydrolase
MSLENISCQKSFGGWHKRYRHRSDVLGCDMVFAVYLPPQAEQGGKLPVLYWLSGLTCTDENFMQKAGAQRMAAELGLIIVAPDTSPRGADVPGDPDNAWDFGLGAGFYLNATQDPWARHYRMHDYVVQELPALVEAHFPASDKRGISGHSMGGHGALVCALRNPGLYRSVSAFSPINNPMDCPWGQKAFSRYLGEDRSKWREWDACALIAEAQEKLPLLVDQGDRDDFLANQLKPEALQQAAKSAGHPLELRLQPGYDHSYFFIASFIDDHLQHHARALNA
>NZ_CP012831.1|WP_060738985.1|1310512_1311625_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MIKSRAAVAFEAKKPLEIVEVDVAMPKAGEVLLRVVASGVCHTDAYTLSGADPEGIFPSILGHEGGAIVEAIGEGVTSVAVGDHVIPLYTPECGQCKFCKSGKTNLCQAIRATQGKGLMPDGTSRFSYKGETIFHYMGTSTFSEYTVLPEISVAKIPKEAPLEKVCLLGCGVTTGIGAVLNTAKVKPGDTVAIFGLGGIGLSAVIGAVKAKAARIIAIDINPAKFEIAKQLGATDCVNPKDFDRPIQEVIVDMTDGGVDFSFECIGNVQLMRAALECCHKGWGESVIIGVAGAGQEIATRPFQLVTGRVWRGSAFGGVRGRSELPSYVEMAEKGEIPLDTFITHTMGLEDINKAFDLMHEGKSIRTVIHF

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Crispr_ID: NZ_CP012831_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012831_4

3420597-3420753

Orphan

Consensus_repeat	Method
CCTACCGCTACGACGCCTTCGGCAAACGCATC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP012831_4

>merge|NZ_CP012831|4|3420597-3420753|PILER-CR
CTACGACTACGACGCCTTCGGCAACCTGATCCGCGAACGCCGCGGCCAGGCCCTGGTCAGCGCCTACCGCTACGACAGCCAACACCGCCTGATCGGCGTCACCGGCGCCGACGGCCGCGAAACGTCCTACCGCTACGACGCCTTCGGCCGACGCATC

>NZ_CP012831|4|1|3420597-3420753|PILER-CR
CTACGACTACGACGCCTTCGGCAACCTGATCC	GCGAACGCCGCGGCCAGGCCCTGGTCAGCGC
CTACCGCTACGACAGCCAACACCGCCTGATCG	GCGTCACCGGCGCCGACGGCCGCGAAACGTCCTACCGCTACGACGCCTT
CGGCCGACGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012831.1\|WP_060740447.1\|3425340_3426225_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP012831.1\|WP_060740449.1\|3429503_3430562_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235763
NZ_CP012831.1\|WP_060740441.1\|3412759_3414103_-\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|350376
NZ_CP012831.1\|WP_060740443.1\|3415871_3416495_-\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NZ_CP012831.1\|WP_060740450.1\|3430558_3431971_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143467
NZ_CP012831.1\|WP_060740448.1\|3426255_3427620_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP012831.1\|WP_060740435.1\|3407532_3408195_+\|DUF2491-family-protein	unknown	unknown	gnl\|CDD\|371191
NZ_CP012831.1\|WP_060740451.1\|3432196_3433201_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012831.1\|WP_060740438.1\|3409375_3410533_+\|glutathionylspermidine-synthase-family-protein	unknown	unknown	gnl\|CDD\|367631
NZ_CP012831.1\|WP_060740446.1\|3423850_3425281_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|236904
NZ_CP012831.1\|WP_060740445.1\|3422462_3423716_+\|cystathionine-gamma-synthase-family-protein	unknown	unknown	gnl\|CDD\|236202
NZ_CP012831.1\|WP_060740436.1\|3408210_3408639_+\|DUF350-domain-containing-protein	unknown	unknown	gnl\|CDD\|226289
NZ_CP012831.1\|WP_060740440.1\|3412314_3412770_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012831.1\|WP_060740439.1\|3410670_3411603_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|226955
NZ_CP012831.1\|WP_053125728.1\|3427631_3428069_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP012831.1\|WP_060740452.1\|3433760_3435035_+\|glycoside-hydrolase-68-family-protein	unknown	unknown	gnl\|CDD\|367086
NZ_CP012831.1\|WP_060740437.1\|3408658_3409363_+\|DUF1190-domain-containing-protein	unknown	unknown	gnl\|CDD\|377691
NZ_CP012831.1\|WP_081015364.1\|3421719_3422121_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012831.1\|WP_003205972.1\|3411604_3412225_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP012831.1\|WP_060740442.1\|3414102_3415860_-\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|371922

Protein	Function_ID	Function_description	E-value
NZ_CP012831.1\|WP_060740447.1\|3425340_3426225_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	4.6326e-89
NZ_CP012831.1\|WP_060740449.1\|3429503_3430562_+\|homoserine-dehydrogenase	gnl\|CDD\|235763	PRK06270, PRK06270, homoserine dehydrogenase; Provisional.	1.01046e-176
NZ_CP012831.1\|WP_060740441.1\|3412759_3414103_-\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	gnl\|CDD\|350376	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases. This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).	1.09557e-48
NZ_CP012831.1\|WP_060740446.1\|3423850_3425281_+\|amino-acid-permease	gnl\|CDD\|236904	PRK11387, PRK11387, S-methylmethionine permease.	0
NZ_CP012831.1\|WP_060740439.1\|3410670_3411603_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|226955	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only].	1.2332e-143
NZ_CP012831.1\|WP_060740450.1\|3430558_3431971_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143467	cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.	0
NZ_CP012831.1\|WP_060740448.1\|3426255_3427620_+\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP012831.1\|WP_060740435.1\|3407532_3408195_+\|DUF2491-family-protein	gnl\|CDD\|371191	pfam10679, DUF2491, Protein of unknown function (DUF2491). This is a bacterial family of uncharacterized proteins.	1.49747e-44
NZ_CP012831.1\|WP_060740452.1\|3433760_3435035_+\|glycoside-hydrolase-68-family-protein	gnl\|CDD\|367086	pfam02435, Glyco_hydro_68, Levansucrase/Invertase. This Pfam family consists of the glycosyl hydrolase 68 family, including several bacterial levansucrase enzymes, and invertase from zymomonas.	4.65665e-175
NZ_CP012831.1\|WP_060740438.1\|3409375_3410533_+\|glutathionylspermidine-synthase-family-protein	gnl\|CDD\|367631	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp. This region contains the Glutathionylspermidine synthase enzymatic activity EC:6.3.1.8. This is the C-terminal region in bi-enzymes. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design. This region, the pre-ATP grasp region, probably carries the substrate-binding site.	0
NZ_CP012831.1\|WP_060740445.1\|3422462_3423716_+\|cystathionine-gamma-synthase-family-protein	gnl\|CDD\|236202	PRK08249, PRK08249, cystathionine gamma-synthase family protein.	0
NZ_CP012831.1\|WP_060740436.1\|3408210_3408639_+\|DUF350-domain-containing-protein	gnl\|CDD\|226289	COG3766, COG3766, Predicted membrane protein [Function unknown].	1.77436e-29
NZ_CP012831.1\|WP_060740443.1\|3415871_3416495_-\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	7.56402e-21
NZ_CP012831.1\|WP_053125728.1\|3427631_3428069_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.63613e-29
NZ_CP012831.1\|WP_060740437.1\|3408658_3409363_+\|DUF1190-domain-containing-protein	gnl\|CDD\|377691	pfam06693, DUF1190, Protein of unknown function (DUF1190). This family consists of several hypothetical Enterobacterial proteins of around 212 residues in length and is known as YjfM in Escherichia coli. The function of this family is unknown.	2.8173e-23
NZ_CP012831.1\|WP_003205972.1\|3411604_3412225_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.47022e-33
NZ_CP012831.1\|WP_060740442.1\|3414102_3415860_-\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	gnl\|CDD\|371922	pfam12147, Methyltransf_20, Putative methyltransferase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases.	0

>NZ_CP012831.1|WP_060740443.1|3415871_3416495_-|CDP-alcohol-phosphatidyltransferase-family-protein
MPSIYQLKPAFQNLLRPMVQRLYNNGVTANQVTLLAGIVSVLVGAVIAWFASHPWIFVLVPVWMFLRMALNAVDGMLAREFGQQSHLGAYLNELCDIIADVALILPFALFADTSLLLVLLVTLLALFSEYAGVLGAMVGASRRYDGPMGKSDRAFVFGVLATGIALGWLGAYWINGVMAVVAALLVYTLVNRVRHGLGQVKENAPSA
>NZ_CP012831.1|WP_060740442.1|3414102_3415860_-|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase
MREAQHRTFTTHDGVELFYQHWPAVDAAAGEPRQAVLLFHRGHEHSGRIAHLVDELDLPGFDFFAWDARGHGQSPGERGDSPSFATSARDVQTFCDHIGTAHQIDEANIAVVAQSVGAVIVSTWVHDYAPRIRSLVLASPAFKVKLYVPFARPGLALMRKFRGNFFVNSYVKAKFLSHDPERVASYDSDPLITKAISVNVLLGLYEAADRVVADAQAIQVPTQLLISGSDFVVHRKPQEQFFERLGSLHKEKHILPGFFHDTLGEKNRAPAVASARRFILQNFARPLDRPSLLDADRLGATCAEAETLATPLPHNSLRDLYWRMTRASMRFGSKLSAGVKLGFDTGFDSGSTLDYVYRNRPTGTSALGKMIDQNYLNSIGWRGIRQRKLNVEELLRLAMAELRAQDREVRIVDIAAGHGRYILEALQGVSPLPESILLRDYSDINVRDGSALIVEKGLGDIARFVKGDAFDRQDLAALEPKPTLAVVSGLYELFADNQLVGGSLAGLAEAVEPGGFLVYTGQPWHPQLELIARALTSHRAGQAWVMRRRTQAEMDQLVEAAGFRKITLRVDEWGIFSVSLAQRVQ
>NZ_CP012831.1|WP_060740441.1|3412759_3414103_-|phosphatase-PAP2/dual-specificity-phosphatase-family-protein
MSAVIAPAREPALLKPAVLWLLLLAPLFFTTYGFATWVTSQRDDVGTLVFAWETHMPFMAWTIVPYWSIDLLYGLSLLLPSSRDELKRHALRLLTAQVIAVSCFLLWPLRFTFPRPEMDGVFGWLFEVLAGFDKPFNQAPSLHIALLVILWVCYQRHLQGVWRWLMHGWFALIGVSVLTTYQHHFIDLPTGALAGWLCVWLWPLDRPSPLLSARLAADPARRRLAWRYGLGAAVLFIPAFALGGAWLWLIWPAVAVLMVALNYLVFGADGFQKRADGRLSPAARWLLAPYLAAAWINSRWWTRKHPQPDQVADNVWLGRIPTPMELKDSAFTGVLDLCAELSMDSTGVAYRSLPVLDLTAPTTEQCLTAAEAIESLRQHGPVLVCCALGYSRSATAVVAWLLHSGRAANVDAAIVQIQRARPRIVLQAAHRRALEQLSTAQGHVHDQ
>NZ_CP012831.1|WP_060740440.1|3412314_3412770_-|hypothetical-protein
MISDMELHTVASLLRRGHSLDQLSTGLTLLGALLGLGQWLVGLIDPWLLLLSAALLVLGVLEKYWALRVAFDADLFQRMADSTQSLAERTYTLDQALTALGLQPAARAGRLWTERRHGALLLLRRQSRLLAVQVVLVLGFILASPWLASSI
>NZ_CP012831.1|WP_003205972.1|3411604_3412225_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MFEPVVANLITSAARMVTGARSLWLGCAPTPVQRIYFANHSSHGDFVLLWASLPPALRKLTRPVAGADYWQTSPVRRYIINRVFNGVLVDRERKDPSYSPLQPMLDALENGDSLIIFPEGTRNPEEGLLPFKSGIYHLMKNHPEVEVIPVWIANLNRVMPKGRVLPLPLLCTTSFGAPLCIEEGESKEQFLERSRAALLALAPEHV
>NZ_CP012831.1|WP_060740439.1|3410670_3411603_-|phosphatidate-cytidylyltransferase
MDRYTLMLFGGIGAILVLASLIGFILRLKTRGAPNSVIDNLNARINAWWIMVLVIGVAFWLGNAAVILLFYAVSFYALREFLTLTPTRRSDYPALVAAFYLALPLQYLLIYYDWYGLFSIFIPVYVFLLLPILASLGGDSTHFLERASKVQWGLMIAVFCISFVPALLTLDIAGFEGRNLLLIAYLVIVVQLSDVLQYVCGKLFGKHKIAPNLSPSKTVEGFVGGIFLASLIGGALWWITPFNPWQSFLIALLINLLGFAGGIVMSAIKRDRGVKDWGHMIEGHGGMLDRLDSVCFAAPIFFHLVRYWWT
>NZ_CP012831.1|WP_060740438.1|3409375_3410533_+|glutathionylspermidine-synthase-family-protein
MKKIHCAERPDWKQTAEQLGFLFHTIDDEPYWDESAYYQFTLKQIEDDLEDPTTEIHDMCMDLVARVVQSEELLERLSIPAPFFDLVRTSWLEGHPHLYGRMDFSYNGSGPAKLLELNYDTPTSLYEAAAFQWGWLEQCIERGTLPAHADQFNSIDTKLHQAFAQLQLTQPFYFASVKDSIEDKGTTDYLRLIAEKVGIESRHIDIEDIGLNSDGRFVDLEERWIPHLFKLHAWEFIFHEPFGAAIAQCDTQFFEPAWKSIISNKGILPLLWEFNKGHPNLLAAHLDTDTSKAVPKGWVRKPFFSREGANIELQTADGLIVKEDGPYTDAPFILQEFAPLPKFDDSYTLIGSWVIGDQAAGIGVREDNSLITKDSSRFLPHLILD
>NZ_CP012831.1|WP_060740437.1|3408658_3409363_+|DUF1190-domain-containing-protein
MKRSKYVQLSLAASVAMAISGCGPTEKTYELKKKYNFQSVQQCVDEKLPVDICADAYMTAMTEHRRIAPVYDNQADCDADFVPDWCQQDSAGKFIPKLGGFELSAEGEVTQSEVDAARAQLPASEAMNTGGGFSNLLTGLLIGNMLSSNRNSYFSEPVYRYRDDRGSFGSSTLSQRVSTGSTFTRSNQARYGSYTDSIKSSSKPMSVASSTSRGGFGSKSSARSGWGGSSSSGG
>NZ_CP012831.1|WP_060740436.1|3408210_3408639_+|DUF350-domain-containing-protein
MLEALSISLNKAAVFGFALYILGAAVLFALFQFIYIHVTPHKEFELIRSGNVAAAIALSGALIGFAIPASNVIAYSISMLDFVVWTVIAAVVQLLAFLVTSLVLKGASARIKQGEIAAGIYIAAVAISVGLLNAACMTPSTN
>NZ_CP012831.1|WP_060740435.1|3407532_3408195_+|DUF2491-family-protein
MGWFKQLMGLEAPNANTTASQGAPVTGPLGLASGKQVMFDATLKLLLDGNSTVVIPGSQQIWSLGIVDLGQSNWLSRCYMNDEDYWLQVHTSGDIAGQVESVILFNYLSYVTINSETELRRLAGPESLIGLPTYTHDGVEYTREWGTEAGQTELVTLSERVSNPDESYSVEHRSMLYARDTGLTDRREFLLFSVEEDAEGTVSLSTSLGISLYTTDLNTL
>NZ_CP012831.1|WP_081015364.1|3421719_3422121_+|hypothetical-protein
MTKQVIPVITNGRREEVVLDVNASKSTVLLTFKNGWSKKYSGVDVYECLGKIIQEHSDSKFLCKGAKLSVRPSSMSSQMSSGIAAYEHVLGKRASRADLVNIFDYEDQDIVSDPQLQKDYFFLWLDSIKDVDE
>NZ_CP012831.1|WP_060740445.1|3422462_3423716_+|cystathionine-gamma-synthase-family-protein
MNNKPDSTGLDNAGAGTRAVWGGEQVRHPYNATQTPIVASAAYGYDDIDVWYDVALGKAPGFIYSRMSNPTVETLEAKIRELEMAESAVAFSSGMAAISSVLYTFLAHGDRVVSTKDSYGGTNKIFEEFLPRTGVAVTLCETFDHDDIEREIAKGCQVLYLETPTNPTLKILDIPRLVAAAKRVGAVVVADNTFATPLNQSPLALGVDVVIHSATKFLSGHGDVLGGLVCGREALMAKVRHYREINGASLDPFSAYLIIRGMKTLALRMRQQQHSARALAEFLCTEPLVESVNYPGLPSHPNHAVACAQMSGFGAIVSFVLAGGMDTVKLLLPRLRFAHCAGNLGAVETIYGPARTTSHVENTLEERQALGISEGLVRVSVGIEDTDDLLDDLKQAFAFVKKTLDPQLNEVLTETAT
>NZ_CP012831.1|WP_060740446.1|3423850_3425281_+|amino-acid-permease
MSITEQQTNTRTGFKQEMQTRHIVMLALGGVIGTGLFLTSGYTVNQAGPMGAVIAYIIGALMVYMVMMCLGELAVQMPETGSFSTYATRFLGPGTGYTVAWLYWLTWTVAIGSEFTAAGILMSRWFPDTPVWIWSALFAGVVFLTNVVSVRLFAETEFWLSLIKVLTVVVFLLIGGGAILGLLNIDQAHSIGLSNFTREGLFPTGFMPIAMTLLAVSFAFSGTELIGIAAGETKDPQRNVPRAIRTTVLRLAVFFVGTIFVLATLLPREQAGLVESPFVTVFTYIGIPYSADIMNFVIISALLSAANSGLYAASRMLWTLSDQGHLPKQFSALTRMGTPLNAIIVSMAGGAASLLSSVFAADTIYLALVSISGLAVVVVWMSIAASQIAFRRHYVANGGDIRDLKFRVRGYPWVPLGALVCCSLACVGIAFDPEQRVALYFGLPFIAWCYFVYYITRKSRERRLSVALVAQPSDAF
>NZ_CP012831.1|WP_060740447.1|3425340_3426225_+|LysR-family-transcriptional-regulator
MKQKTLPPLNWLRAFEVSARCLNFTHAADELFLTQGAVSQQIRQLESHLGVALFKRLPRGLGLTEEGQAYLPVVQDAITRLAVGTNEIFGQHKRRPIKVRGSLAFFVHWLAPKLVDFRQAHPHVDIRYISNIWVKELDGEDDMEIRWGHGQWPGLVSQRLTWDTLFPVCSPALMATLKVPADVAKHSLLHVLGYEEGWGYWLKMVGVDSVDSSTGMQFDTLVCTLRMAELGQGIALARSSMVSELLDDGRLVEPFAQRIEASESFYLVRSSGAEQHPDAARFSTWLVEQAHRFK
>NZ_CP012831.1|WP_060740448.1|3426255_3427620_+|threonine-synthase
MRYVSTRNSAVQVDFEKVVLSAIAEDGGLFVPVELPQFESQDIANWSTLAYDELAYRVMRPFVGEAIPEADFKRVLKEAGSQFSHRSLAPLHQVDRNEWVLELFHGPTRSSKDFAAQLQARLVQYFLRKRGRRAVVIGVTNGDTGLAAIEAFKHCDETDVVVIYPEAGVLQDQLQDLQATAHPRVHQVAVDGSFDECQTLVTQLFRQHEAISFNSSNWVSVMAQLVFYFHAVLQLGGGQRPIGFSVPAASFAEVYAGYIAQKMGLPITQMIVATNQNDALHQFFLKNHYSRLRASKTLSPAMDLSIFSNLERFLWELYGHDDQAVSALMHTFETRGEMTIANEFWLQARMIIDSYAVSDEQTLEEITSLYRDTGYVIDPHTATGVLAARLYRRSLVAPMVTLGEISPAKSAQLLGELGISIAAQQHPVSEHGPAQIHRIQPDDLAALHQLLGAL
>NZ_CP012831.1|WP_053125728.1|3427631_3428069_+|Lrp/AsnC-family-transcriptional-regulator
MKRILDPLDERIIAELRLNARAAHAELAAKVNLSRNAVRQRIERLERDGAIQGYTVRTGEGAQASSNINAVIFVYRYDRMRGAEVLQALQAMPEVLQCDVMSGEFDLMLRVGAANPERVHKVWKEISALPGVENTVTSFVLSSVV
>NZ_CP012831.1|WP_060740449.1|3429503_3430562_+|homoserine-dehydrogenase
MTEYKLALVGFGGVNRALAQLIAERNESWKTDLGFTLKIVGVTDLFLGSVMDRHGLDAASLARLPATQGAMAQLPGGTVDALNEAVIKDCGADIIAEATFTNPVDGEPATSFCRWALERGKHVVTTNKGPIALHGAELKALAQRNNVAFEYEGSVMSGTPVIRLAKQSLAGSSISGFEGILNGTSNFVLTCMEGGLGFAEAVKKAQELGYAEADPTADVEGHDVRLKIVILANELLDAKLTVNDVTCSGISALSLADIEKARHDGARWKLIGAATRQADGSISASVEPRLLSNDHPLASVSGATNAVSFTSELLGAVTVSGPGAGRTETAFALLSDIIHIHQSATRKQEHNL
>NZ_CP012831.1|WP_060740450.1|3430558_3431971_+|aldehyde-dehydrogenase-family-protein
MNVSRLALAVVEPHIEVLNPFDGSVVGTVADLKASEVPQLLETGRNGVKACALLPRHRRASILEQAALNIERDAKAFARLIVDEAGKTLKQAEKEVKRCVNTLKLSAEEAKRNAGEIVPFDAYEGAESRQGWFTRDPLGLIVAITPYNDPLNLVAHKLGPAIAGGNAVILKPSELAPLSALKLVSYLVAAGLPETVVTVATGGAELGKTLVAARDVRMISFTGGFVTGEQIARTAGLKKLAMDLGGNAPVIVMADCNLDAAVDSCISGAFWAAGQNCIGTQRLLIHAPIYAAFRERFVHQAQALVVGNPLLANTDIGPMITHQAAQNAEHVVNEALQQGATLLCGHRRQGACYAATVLENVDHASRLWRNEVFAPVVVLQPFETFDEAIALANEPDYALHAGIFTNDLSTAMSAARRIEAGGVMINDSSDFRFDAMPFGGSKYGSLGREGVRFAYEEMTQPKVVCLNTLG
>NZ_CP012831.1|WP_060740451.1|3432196_3433201_+|hypothetical-protein
MPNVLVVVWDFDTRRLRVPVENSLLGIQLRIGALLSMARTAFAKHVDQHQLNYCLVVAPEYLFSKDMPVSFMSEEEKEIIRATLADISTRNPWLILVPGTTLWFKSMLRPESRALKRETGKLKSWGPARNINKAKYRVEMDAVVNEIPERDRISKGIYGHHAATTKEEIAKIESRGAEARDGIVRNTGFIIWNGNVFYQHKRYPNIGNDGLDELAGAQFWADKIFMPGSYREAPAIHGLQLALEICAEHFIGATVLHKNNVLDFHILVSASIALAKARVGVKHGGYVVHADSGGSSVYRREGRDLVLLQAIDETEIGLLGVEAGRARSFVCAIA
>NZ_CP012831.1|WP_060740452.1|3433760_3435035_+|glycoside-hydrolase-68-family-protein
MKTTTEKFGVTPHQPSLWTRADALKVRADDPTTTQPLVSADFPVLNNDVFIWDTMPLRDLDGNVTSVDGWSVIFTLTADRHPNDPQYLDEDGNYDILRDWNDRHGRAKMYYWFSRTGKNWEFGGRVMAEGVSPTAREWAGTPILLNDRGEVDLYYTAVTPGATIVKVRGRVVTTEHGVSMVGFEKVKPLFEADGKMYQTEAQNAFWGFRDPWPFRDPNDGKLYMLFEGNVAGERGSHKVGEAEIGDVPPGYEDVGNSRYQTACVGIAVARDADGDDWEMLPPLLTAVGVNDQTERPHFVFQDGKYYLFTISHTFTYGDGVTGPDGVYGFVADSLFGPYVPLNGSGLVLGNPSSQPFQTYSHYVMPNGLVTSFIDSVPTDETGTQIRVGGTEAPTVGMKIKGQQTFVVAEYDYGYIPPMLDVTLK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_CP012831.1	4337060-4337090	0	1.0
NZ_CP012831_4	4.2\|3420692\|49\|NZ_CP012831\|PILER-CR	3420692-3420740	49	NZ_CP012831.1	4337105-4337153	0	1.0

1. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to position: 4337060-4337090, mismatch: 0, identity: 1.0

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
cgcgaacgccgcggccaggccctggtcagcg	Protospacer
*******************************

2. spacer 4.2|3420692|49|NZ_CP012831|PILER-CR matches to position: 4337105-4337153, mismatch: 0, identity: 1.0

agccaacaccgcctgatcggcgtcaccggcgccgacggccgcgaaacgt	CRISPR spacer
agccaacaccgcctgatcggcgtcaccggcgccgacggccgcgaaacgt	Protospacer
*************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	886144-886174	5	0.839
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	171940-171970	7	0.774
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_CP026489	Streptomyces sp. 604F plasmid unnamed, complete sequence	112221-112251	7	0.774
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_CP029339	Streptomyces sp. SM17 plasmid pSM17A, complete sequence	79295-79325	7	0.774
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_CP020040	Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence	180005-180035	7	0.774
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_CP020041	Streptomyces sp. 3211 isolate 3 plasmid p3211-2, complete sequence	97400-97430	7	0.774
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	286466-286496	7	0.774
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_CP017320	Xanthomonas campestris pv. campestris str. CN18 plasmid unnamed2, complete sequence	25481-25511	7	0.774
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1526795-1526825	7	0.774
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1847461-1847491	8	0.742
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	405536-405566	8	0.742
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	5663-5693	8	0.742
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	30773-30803	8	0.742
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_AP014706	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence	137998-138028	9	0.71
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	NZ_CP016354	Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence	22950-22980	9	0.71
NZ_CP012831_4	4.1\|3420629\|31\|NZ_CP012831\|PILER-CR	3420629-3420659	31	MK473373	Pseudomonas phage Lana, complete genome	43224-43254	10	0.677

1. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.839

cgcgaacgccgcggccaggccctgg-tcagcg	CRISPR spacer
cgcgaacgccgggcccaggccctggaacagt-	Protospacer
*********** * ***********  ***.

2. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
gtctataaccgcggccaggcccgggtcagcg	Protospacer
  * *  .************** ********

3. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NZ_CP026489 (Streptomyces sp. 604F plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
cacgaacgccgcggacagggcctggtaggac	Protospacer
*.************ **** ****** .*

4. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NZ_CP029339 (Streptomyces sp. SM17 plasmid pSM17A, complete sequence) position: , mismatch: 7, identity: 0.774

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
cacgaacgccgcggacagggcctggtaggac	Protospacer
*.************ **** ****** .*

5. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 7, identity: 0.774

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
ttcgagcgccgcggccgggccctggacttcg	Protospacer
. ***.**********.******** *  **

6. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NZ_CP020041 (Streptomyces sp. 3211 isolate 3 plasmid p3211-2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
ttcgagcgccgcggccgggccctggacttcg	Protospacer
. ***.**********.******** *  **

7. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.774

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
atcgaacgccgcggcgagtccctggacgacg	Protospacer
  ************* ** ****** *..**

8. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NZ_CP017320 (Xanthomonas campestris pv. campestris str. CN18 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
cgcgaacgcctcggcctggccctcgatcgcc	Protospacer
********** ***** ****** * . **

9. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.774

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
atcgaacgccgcggcgagtccctggacgacg	Protospacer
  ************* ** ****** *..**

10. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.742

cgcgaacgccgcggccaggccctggtcagcg--	CRISPR spacer
cgcgaacgccgcggcgaggccc--accgacagg	Protospacer
*************** ******  ..*..*.

11. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 8, identity: 0.742

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
ctcgaacgccgcggccaggagctgggtgctg	Protospacer
* *****************  **** .. .*

12. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.742

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
gtctataaccgcggccaggcgcgggtcagcg	Protospacer
  * *  .************ * ********

13. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 8, identity: 0.742

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
ctcgaacgccgcggccaggagctgggtgctg	Protospacer
* *****************  **** .. .*

14. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 9, identity: 0.71

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
aacgagcgcctcggccaggccctggggacgc	Protospacer
 .***.**** **************  *

15. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to NZ_CP016354 (Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence) position: , mismatch: 9, identity: 0.71

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
cgcgaacgcctcggcctggccctccagattc	Protospacer
********** ***** ******    * .

16. spacer 4.1|3420629|31|NZ_CP012831|PILER-CR matches to MK473373 (Pseudomonas phage Lana, complete genome) position: , mismatch: 10, identity: 0.677

cgcgaacgccgcggccaggccctggtcagcg	CRISPR spacer
gtcgaaagcggcggccaggccctggctgctc	Protospacer
  **** ** ***************... .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

394375 : 469206

Pseudomonas_virus(55.0%)

holin,plate,capsid,integrase,portal,tRNA,tail,terminase,protease,head

attL 399726:399759|attR 473373:473406

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024778305.1\|394375_395659_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.8e-138	59.5
WP_003183177.1\|395766_396408_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.4e-58	59.1
WP_060738324.1\|396501_397812_-	trigger factor	NA	NA	NA	NA
WP_053120836.1\|398852_399707_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.2e-29	33.2
399726:399759	attL	NA	NA	NA	NA
WP_060738325.1\|400038_400977_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_060738326.1\|401091_401286_-	hypothetical protein	NA	NA	NA	NA
WP_060738327.1\|401387_402065_-	hypothetical protein	NA	NA	NA	NA
WP_060738328.1\|402534_403284_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	4.6e-40	39.0
WP_060738329.1\|403310_403562_-	hypothetical protein	NA	NA	NA	NA
WP_060738330.1\|403702_404599_+	transcriptional activator NhaR	NA	NA	NA	NA
WP_060738331.1\|404595_405756_-	MFS transporter	NA	NA	NA	NA
WP_060738332.1\|406037_407270_+	serine/threonine transporter SstT	NA	NA	NA	NA
WP_060738333.1\|407470_407980_-	DUF1993 domain-containing protein	NA	NA	NA	NA
WP_060738334.1\|408109_408757_+	DUF480 domain-containing protein	NA	NA	NA	NA
WP_060738335.1\|408763_409585_-	shikimate 5-dehydrogenase	NA	NA	NA	NA
WP_060738336.1\|409845_410196_+	hypothetical protein	NA	NA	NA	NA
WP_060738337.1\|410274_411792_-	purine permease	NA	NA	NA	NA
WP_060738338.1\|411915_412740_-	arylamine N-acetyltransferase	NA	NA	NA	NA
WP_060738339.1\|412842_413637_-	exodeoxyribonuclease III	NA	NA	NA	NA
WP_060738340.1\|413739_415311_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_060738341.1\|415633_416992_+	chromate efflux transporter	A0A219VHC2	Ochrobactrum_phage	7.3e-28	57.0
WP_060738342.1\|416988_417420_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060738343.1\|417547_417862_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_060738344.1\|417864_418152_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_060738345.1\|418294_418783_+	hypothetical protein	NA	NA	NA	NA
WP_060738346.1\|419209_420427_-	MFS transporter	NA	NA	NA	NA
WP_060738347.1\|420796_421705_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_060743051.1\|421766_423278_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_060738348.1\|423288_424584_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_060738349.1\|424767_425703_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_025212783.1\|426311_426587_-	hypothetical protein	NA	NA	NA	NA
WP_060743052.1\|427542_427905_+	hypothetical protein	NA	NA	NA	NA
WP_060738350.1\|427920_428799_-	DNA metabolism protein	NA	NA	NA	NA
WP_060738351.1\|428789_430010_-	putative DNA modification/repair radical SAM protein	NA	NA	NA	NA
WP_152032407.1\|430880_431966_+	hypothetical protein	NA	NA	NA	NA
WP_060738353.1\|433720_433999_+	hypothetical protein	NA	NA	NA	NA
WP_060738354.1\|433995_434481_+	hypothetical protein	NA	NA	NA	NA
WP_060738355.1\|434561_435134_+	hypothetical protein	NA	NA	NA	NA
WP_060738356.1\|435140_436163_-\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	2.2e-138	71.9
WP_060743053.1\|436162_437920_-\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	2.7e-285	79.9
WP_060738357.1\|438087_438918_+\|capsid	GPO family capsid scaffolding protein	Q9ZXM4	Pseudomonas_virus	2.5e-71	52.2
WP_047230284.1\|438961_439981_+\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	6.0e-152	76.0
WP_060738358.1\|439984_440686_+\|terminase	terminase endonuclease subunit	Q9ZXM2	Pseudomonas_virus	2.6e-82	67.8
WP_060738359.1\|440790_441252_+\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	3.7e-48	63.4
WP_003199765.1\|441251_441464_+\|tail	tail protein X	Q9ZXL9	Pseudomonas_virus	6.4e-24	79.1
WP_060743054.1\|441518_441833_+\|holin	phage holin, lambda family	A0A2H4JFM8	uncultured_Caudovirales_phage	1.6e-26	56.7
WP_060738360.1\|441829_442672_+	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	9.2e-90	63.8
WP_060738361.1\|442668_442875_+	hypothetical protein	NA	NA	NA	NA
WP_060738362.1\|442871_443315_+	peptidase	Q9ZXL5	Pseudomonas_virus	5.5e-25	47.9
WP_060738363.1\|443411_443888_+\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	7.1e-47	61.2
WP_060743055.1\|443884_444349_+	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	1.8e-47	61.7
WP_060743056.1\|444343_444790_-	DUF4145 domain-containing protein	M1PSB6	Streptococcus_phage	5.9e-35	53.1
WP_060743057.1\|445268_445841_+\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	7.5e-59	70.5
WP_060738364.1\|445837_446182_+\|plate	baseplate assembly protein	Q9ZXK9	Pseudomonas_virus	1.4e-36	65.8
WP_060738365.1\|446178_447090_+\|plate	baseplate assembly protein	Q9ZXK8	Pseudomonas_virus	4.6e-119	74.1
WP_060738366.1\|447089_447707_+\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	1.2e-73	72.2
WP_060738367.1\|449091_449520_+\|tail	phage tail protein	B5TK82	Pseudomonas_phage	7.4e-19	38.1
WP_060738368.1\|449636_450806_+\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	7.9e-172	76.9
WP_060738369.1\|450862_451378_+\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	1.3e-73	76.0
WP_060738370.1\|451428_451758_+\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	3.7e-26	63.3
WP_003183333.1\|451766_451886_+\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	7.7e-11	82.1
WP_060738371.1\|451875_454821_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-134	34.5
WP_060738372.1\|454826_455267_+\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	1.1e-57	74.7
WP_060738373.1\|455263_456523_+	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	4.2e-195	81.2
WP_060738374.1\|456574_457948_+	hypothetical protein	NA	NA	NA	NA
WP_160320210.1\|458000_458162_-	hypothetical protein	NA	NA	NA	NA
WP_060738375.1\|458291_458636_-	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_060743058.1\|458647_458968_-	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	1.3e-20	50.0
WP_060738376.1\|459052_459265_+	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	2.4e-10	53.2
WP_060738377.1\|459294_459768_+	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	5.6e-44	58.2
WP_060738378.1\|459764_460055_+	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	1.4e-13	44.7
WP_060738379.1\|460051_460423_+	hypothetical protein	NA	NA	NA	NA
WP_003183349.1\|460498_460732_+	hypothetical protein	NA	NA	NA	NA
WP_081015305.1\|460738_463591_+	bifunctional DNA primase/helicase	A0A2H4J936	uncultured_Caudovirales_phage	0.0e+00	62.2
WP_060738381.1\|463648_463987_+	hypothetical protein	Q9ZXI7	Pseudomonas_virus	3.2e-33	63.8
WP_060738382.1\|463983_464190_+	hypothetical protein	NA	NA	NA	NA
WP_060738383.1\|464247_464511_+	hypothetical protein	NA	NA	NA	NA
WP_060738384.1\|464786_465332_+	DUF2786 domain-containing protein	W8VMA8	Pseudomonas_phage	7.7e-21	36.3
WP_060738386.1\|465588_465864_+	Pyocin activator protein PrtN	I6NSR8	Burkholderia_phage	2.1e-22	62.2
WP_060738387.1\|465838_466990_-\|integrase	site-specific integrase	L7TP61	Pseudomonas_virus	9.2e-133	61.4
WP_081015307.1\|467082_468102_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_060738388.1\|468279_469206_+	transaldolase	A0A127KNC6	Cyanophage	1.0e-12	33.5
473373:473406	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1244633 : 1333033

Pseudomonas_phage(49.02%)

holin,plate,tRNA,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060738934.1\|1244633_1246349_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_060738935.1\|1246366_1247320_+	hypothetical protein	NA	NA	NA	NA
WP_060738936.1\|1247478_1248540_-	DNA polymerase IV	NA	NA	NA	NA
WP_060738937.1\|1249360_1252003_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_060738938.1\|1252002_1253292_+	virulence factor family protein	NA	NA	NA	NA
WP_060738939.1\|1253753_1255655_-	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	9.1e-77	34.3
WP_003198379.1\|1255930_1257271_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_060738940.1\|1257507_1257981_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060738941.1\|1258064_1258775_+	RNA-binding protein	NA	NA	NA	NA
WP_053182473.1\|1258834_1259296_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.1e-36	50.0
WP_060738942.1\|1259501_1260200_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_003184787.1\|1260403_1261183_-	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_060738943.1\|1261304_1262231_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_053118952.1\|1262235_1262598_-	diacylglycerol kinase	NA	NA	NA	NA
WP_060738944.1\|1262670_1263324_-	response regulator transcription factor	NA	NA	NA	NA
WP_060738945.1\|1263537_1264284_-	DTW domain-containing protein	NA	NA	NA	NA
WP_003198359.1\|1264468_1264891_+	quorum-sensing-regulated virulence factor family protein	NA	NA	NA	NA
WP_003198357.1\|1264891_1265086_-	hypothetical protein	NA	NA	NA	NA
WP_060738946.1\|1265540_1266659_+	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_053118941.1\|1266705_1267173_-	recombination regulator RecX	NA	NA	NA	NA
WP_003198351.1\|1267181_1268234_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.9e-109	61.4
WP_060738947.1\|1268317_1268818_-	CinA family protein	B5TK85	Pseudomonas_phage	5.1e-80	92.2
WP_060738948.1\|1268889_1269426_-	lysozyme	B5TK84	Pseudomonas_phage	8.2e-76	87.1
WP_060738949.1\|1269407_1269971_-	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	1.5e-96	94.1
WP_060743075.1\|1269995_1270427_-	hypothetical protein	B5TK82	Pseudomonas_phage	1.9e-70	89.5
WP_060738950.1\|1270440_1271352_-	hypothetical protein	B5TK81	Pseudomonas_phage	1.6e-148	93.4
WP_081015463.1\|1271457_1271880_-	hypothetical protein	B5TK80	Pseudomonas_phage	5.2e-33	57.3
WP_060738953.1\|1273127_1273637_-	hypothetical protein	B5TK78	Pseudomonas_phage	4.1e-77	91.1
WP_060738954.1\|1273633_1274797_-	hypothetical protein	B5TK77	Pseudomonas_phage	4.5e-204	93.0
WP_060738955.1\|1274807_1275407_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	4.7e-112	98.5
WP_060738956.1\|1275394_1276435_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.7e-181	94.5
WP_060738957.1\|1276424_1276823_-	hypothetical protein	B5TK74	Pseudomonas_phage	1.3e-70	97.7
WP_060738958.1\|1276822_1277332_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	2.7e-84	97.0
WP_060738959.1\|1277586_1278627_-\|plate	baseplate protein	B5TK72	Pseudomonas_phage	4.2e-193	98.3
WP_060738960.1\|1278630_1279869_-	hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	4.5e-226	97.8
WP_060738961.1\|1279855_1281430_-	hypothetical protein	B5TK70	Pseudomonas_phage	1.6e-159	96.0
WP_045155211.1\|1281560_1281857_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	5.4e-45	98.0
WP_003198314.1\|1281853_1282201_-\|tail	phage tail protein	B5TK68	Pseudomonas_phage	5.7e-62	100.0
WP_060738962.1\|1282268_1283765_-\|tail	phage tail protein	B5TK67	Pseudomonas_phage	1.6e-273	97.6
WP_003198311.1\|1283764_1283947_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	6.3e-28	100.0
WP_060738963.1\|1283943_1284528_-	hypothetical protein	B5TK65	Pseudomonas_phage	5.0e-103	97.9
WP_060738964.1\|1284793_1285810_-\|tail	phage tail protein	A0A2H4JH05	uncultured_Caudovirales_phage	2.2e-106	56.4
WP_058542798.1\|1285819_1286032_-\|tail	phage tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	3.1e-18	64.3
WP_060738965.1\|1286024_1286408_-\|tail	phage tail protein	A2I2Y2	Vibrio_virus	1.8e-32	56.5
WP_060738966.1\|1286407_1288588_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_060738967.1\|1288716_1289292_-\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	1.4e-28	39.0
WP_060738968.1\|1289444_1289951_-\|tail	phage tail protein	Q6R4W3	Vibrio_virus	4.6e-20	32.7
WP_060738969.1\|1289950_1291117_-	hypothetical protein	B0ZSG8	Halomonas_phage	3.2e-125	57.0
WP_060738970.1\|1291119_1291329_-	hypothetical protein	NA	NA	NA	NA
WP_060738971.1\|1291429_1291849_-\|tail	phage tail protein	NA	NA	NA	NA
WP_060738972.1\|1291856_1293803_-\|tail	phage tail protein	A0A077K818	Ralstonia_phage	5.3e-48	38.5
WP_060738973.1\|1293803_1294439_-\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	1.2e-46	56.0
WP_060738974.1\|1294435_1295431_-\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	2.0e-112	64.7
WP_018607976.1\|1295427_1295760_-	hypothetical protein	A0A2H4JI46	uncultured_Caudovirales_phage	1.4e-38	71.8
WP_060738975.1\|1295771_1296383_-\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	4.7e-43	59.0
WP_060738976.1\|1296386_1296899_-	hypothetical protein	A0A2H4JEV5	uncultured_Caudovirales_phage	2.7e-20	37.9
WP_060738977.1\|1296935_1297286_-\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	6.0e-59	95.7
WP_060743076.1\|1297336_1297981_-	hypothetical protein	B5TK60	Pseudomonas_phage	1.1e-111	92.1
WP_081015322.1\|1298001_1298184_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	4.8e-28	96.7
WP_039594456.1\|1298650_1299385_-	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	1.0e-137	99.6
WP_060738978.1\|1299921_1300263_+	hypothetical protein	B5TK57	Pseudomonas_phage	8.4e-50	90.6
WP_060738979.1\|1300965_1303545_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	4.0e-27	22.3
WP_030139464.1\|1303687_1304011_+	ferredoxin family protein	NA	NA	NA	NA
WP_047227588.1\|1304501_1305509_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.6e-34	35.8
WP_060738980.1\|1305615_1306461_-	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	8.3e-06	33.3
WP_060738981.1\|1306672_1307350_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.7e-44	50.5
WP_060738982.1\|1307349_1308099_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.8e-66	51.8
WP_060738983.1\|1308086_1309145_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_003184863.1\|1309141_1309615_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_060738984.1\|1309658_1310504_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_060738985.1\|1310512_1311625_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.2e-33	29.5
WP_060738986.1\|1311732_1312629_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_060738987.1\|1312790_1313498_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_003184873.1\|1313494_1313773_-	cell division protein FtsB	NA	NA	NA	NA
WP_060738988.1\|1313944_1315234_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.7e-135	58.8
WP_060738989.1\|1315480_1316326_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.3e-48	42.4
WP_003184880.1\|1316330_1317962_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.2e-156	52.9
WP_060738990.1\|1318236_1319565_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_060738991.1\|1319700_1320648_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_060738992.1\|1320797_1324319_-	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	4.1e-200	36.7
WP_060738993.1\|1324520_1325174_-	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	4.6e-28	39.7
WP_060738994.1\|1325170_1326301_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_053118863.1\|1326303_1327080_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_003184897.1\|1327076_1327517_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_060738995.1\|1327622_1328678_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_003184901.1\|1328681_1329185_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_060738996.1\|1329230_1331606_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_060738997.1\|1331680_1333033_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_3

2694078 : 2765489

Tupanvirus(33.33%)

protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060739947.1\|2694078_2696040_+\|protease	protease modulator HflK	NA	NA	NA	NA
WP_060739948.1\|2696036_2697068_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_060739949.1\|2697064_2698117_+\|protease	protease modulator HflK	NA	NA	NA	NA
WP_060739950.1\|2698113_2700033_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.1e-48	28.4
WP_060739951.1\|2700214_2701402_+	class I SAM-dependent methyltransferase	A0A2K9L0U7	Tupanvirus	2.8e-39	34.4
WP_060739952.1\|2701398_2702838_-	cardiolipin synthase	NA	NA	NA	NA
WP_060739953.1\|2702979_2703501_+	DUF3617 domain-containing protein	NA	NA	NA	NA
WP_060739954.1\|2703621_2704497_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060739955.1\|2704508_2705375_-	metal ABC transporter permease	NA	NA	NA	NA
WP_060739956.1\|2705374_2706043_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_060739957.1\|2706039_2706936_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_081015350.1\|2707051_2707444_-	glutamine synthetase	NA	NA	NA	NA
WP_060739958.1\|2707571_2708780_+	GTP-binding protein	NA	NA	NA	NA
WP_060739959.1\|2708779_2709430_+	DUF1826 domain-containing protein	NA	NA	NA	NA
WP_060739960.1\|2709426_2709780_-	hypothetical protein	NA	NA	NA	NA
WP_060739961.1\|2709807_2710773_+	cobalamin biosynthesis protein CobW	NA	NA	NA	NA
WP_060739962.1\|2710785_2711208_-	DUF3301 domain-containing protein	NA	NA	NA	NA
WP_060739963.1\|2711327_2712200_+	pyridoxal kinase PdxY	NA	NA	NA	NA
WP_060739964.1\|2712322_2712808_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_060739965.1\|2713087_2714851_+	cation:proton antiporter	NA	NA	NA	NA
WP_003187120.1\|2714864_2715272_-	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_060739966.1\|2715412_2716288_-	Tim44 domain-containing protein	NA	NA	NA	NA
WP_060739967.1\|2716523_2718707_-	DNA helicase II	A7KV33	Bacillus_phage	8.5e-119	37.5
WP_060739968.1\|2718969_2721843_+	GGDEF and EAL domain-containing protein	NA	NA	NA	NA
WP_060739969.1\|2721911_2722226_-	hypothetical protein	NA	NA	NA	NA
WP_003187110.1\|2722649_2723516_+	transcriptional regulator HexR	NA	NA	NA	NA
WP_060739970.1\|2723765_2723975_+	hypothetical protein	NA	NA	NA	NA
WP_060739971.1\|2723916_2724879_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_025216234.1\|2725066_2726482_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_060739972.1\|2726495_2728304_+	sodium-extruding oxaloacetate decarboxylase subunit alpha	NA	NA	NA	NA
WP_060739973.1\|2728450_2730571_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_060739974.1\|2730992_2731826_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_060739975.1\|2731822_2732644_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_060739976.1\|2732757_2733657_+	homocysteine S-methyltransferase family protein	NA	NA	NA	NA
WP_060743106.1\|2737117_2738893_+	hypothetical protein	NA	NA	NA	NA
WP_060739977.1\|2738953_2739625_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060739978.1\|2739635_2740082_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060739979.1\|2740084_2740726_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA
WP_060739980.1\|2740826_2742371_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_060739981.1\|2742590_2747204_-	hypothetical protein	NA	NA	NA	NA
WP_060739982.1\|2747449_2748550_-	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060739983.1\|2748561_2749593_-	histone deacetylase family protein	A0A2K9L4C2	Tupanvirus	3.7e-32	34.5
WP_060739984.1\|2749781_2750369_-	hypothetical protein	NA	NA	NA	NA
WP_060739985.1\|2750433_2751462_-	hypothetical protein	NA	NA	NA	NA
WP_060739986.1\|2751535_2752099_-	hypothetical protein	NA	NA	NA	NA
WP_060739987.1\|2752414_2754592_-	lipase family protein	Q58MF5	Prochlorococcus_phage	2.4e-09	34.1
WP_060739988.1\|2754603_2755377_-	hypothetical protein	NA	NA	NA	NA
WP_060739989.1\|2755373_2756228_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_060739990.1\|2756224_2758273_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.6e-31	24.9
WP_060739991.1\|2758720_2760277_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_060739992.1\|2760309_2760813_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_060739993.1\|2760838_2762314_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_060739994.1\|2762320_2762734_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_060739995.1\|2762733_2764521_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_060739996.1\|2764484_2765489_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_4

3128254 : 3163325

Burkholderia_phage(50.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060740265.1\|3128254_3129958_-\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	1.4e-49	29.7
WP_060740266.1\|3130105_3131578_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_060740267.1\|3131657_3132278_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_060740268.1\|3132588_3133767_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.0e-25	37.9
WP_060740269.1\|3133763_3134609_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_060740270.1\|3134680_3135628_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060740271.1\|3136053_3137430_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_060740272.1\|3138047_3139151_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_060740273.1\|3139269_3139533_-	hypothetical protein	NA	NA	NA	NA
WP_060740274.1\|3139915_3141079_-	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_060740275.1\|3141098_3141575_-	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_060740276.1\|3141738_3142704_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_060740277.1\|3142866_3143754_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_060740278.1\|3143825_3144770_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060740279.1\|3144962_3145922_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_060740280.1\|3145990_3147166_+	hypothetical protein	NA	NA	NA	NA
WP_060740281.1\|3147371_3147788_-	DUF3010 family protein	NA	NA	NA	NA
WP_060740282.1\|3147875_3148652_-	hypothetical protein	NA	NA	NA	NA
WP_060740283.1\|3148794_3149118_-	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	2.6e-32	70.4
WP_060740284.1\|3149101_3149356_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	7.7e-24	64.3
WP_060740285.1\|3149458_3149860_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_030139307.1\|3150095_3151073_+	membrane dipeptidase	NA	NA	NA	NA
WP_025215877.1\|3151152_3151683_+	hypothetical protein	NA	NA	NA	NA
WP_060740286.1\|3151698_3153759_+	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_060740287.1\|3153929_3155879_+	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_060740288.1\|3155878_3157099_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_060740289.1\|3157112_3157883_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_060740290.1\|3158203_3158770_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060740291.1\|3159872_3163325_+\|holin	choline dehydrogenase	NA	NA	NA	NA

DBSCAN-SWA_5

4564558 : 4600522

Pseudomonas_virus(55.17%)

plate,integrase,capsid,portal,tail,terminase,head

attL 4561808:4561834|attR 4606927:4606953

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4561808:4561834	attL	NA	NA	NA	NA
WP_060741275.1\|4564558_4565764_-\|integrase	site-specific integrase	A0A2H4JGM5	uncultured_Caudovirales_phage	1.7e-137	59.6
WP_060741277.1\|4566340_4566679_-	hypothetical protein	Q9ZXI7	Pseudomonas_virus	4.4e-27	64.8
WP_060743159.1\|4566742_4569310_-	toprim domain protein	A0A2H4J936	uncultured_Caudovirales_phage	0.0e+00	69.5
WP_060741278.1\|4569532_4569772_-	hypothetical protein	NA	NA	NA	NA
WP_060741279.1\|4569772_4570060_-	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	1.5e-12	46.7
WP_081015474.1\|4569998_4570295_-	DNA-binding protein	Q6QID3	Burkholderia_phage	1.0e-06	49.2
WP_060741280.1\|4570397_4570745_+	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	3.4e-22	51.5
WP_152032436.1\|4571068_4571875_+	TIR domain-containing protein	NA	NA	NA	NA
WP_081015391.1\|4571956_4572445_-	hypothetical protein	NA	NA	NA	NA
WP_060741283.1\|4572435_4572729_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_160320219.1\|4572941_4573079_+	hypothetical protein	NA	NA	NA	NA
WP_060741284.1\|4573568_4575287_+	hypothetical protein	NA	NA	NA	NA
WP_060741285.1\|4575342_4576197_+	hypothetical protein	NA	NA	NA	NA
WP_060741286.1\|4576500_4577067_+	hypothetical protein	NA	NA	NA	NA
WP_060741287.1\|4577337_4578189_-	DNA cytosine methyltransferase	A0A1P8DJM9	Virus_Rctr41k	5.2e-40	50.6
WP_072344093.1\|4578149_4578350_-	Com family DNA-binding transcriptional regulator	Q5ZQW8	Pseudomonas_phage	4.6e-08	52.5
WP_060741288.1\|4578394_4579645_-	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	2.3e-185	79.0
WP_060741289.1\|4579641_4580082_-\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	3.2e-57	74.0
WP_060741290.1\|4580088_4582632_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	9.7e-175	46.6
WP_072344080.1\|4582621_4582741_-\|tail	GpE family phage tail protein	A0A0M3ULA8	Salmonella_phage	9.8e-06	54.1
WP_060741291.1\|4582749_4583079_-\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	2.1e-29	66.1
WP_060741292.1\|4583105_4583621_-\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	1.5e-71	74.9
WP_060741293.1\|4583644_4584814_-\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	4.9e-166	74.6
WP_060741294.1\|4584943_4585303_-	hypothetical protein	B5TK57	Pseudomonas_phage	1.1e-26	58.0
WP_060741295.1\|4585695_4586124_-	hypothetical protein	NA	NA	NA	NA
WP_060741297.1\|4587332_4587959_-\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	5.5e-63	65.0
WP_060741298.1\|4587958_4588870_-\|plate	baseplate assembly protein	Q9ZXK8	Pseudomonas_virus	3.1e-115	70.5
WP_060741299.1\|4588866_4589211_-\|plate	baseplate assembly protein	Q9ZXK9	Pseudomonas_virus	2.6e-35	64.0
WP_060741300.1\|4589207_4589780_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	2.3e-55	69.5
WP_152032437.1\|4589867_4590896_-	hypothetical protein	NA	NA	NA	NA
WP_152032438.1\|4591048_4591606_-	hypothetical protein	NA	NA	NA	NA
WP_152032439.1\|4591707_4593120_-	hypothetical protein	NA	NA	NA	NA
WP_060743160.1\|4593332_4593788_-	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	5.1e-42	57.7
WP_060741303.1\|4593784_4594261_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	1.9e-47	65.0
WP_060741304.1\|4594283_4594496_-\|tail	phage tail protein	Q9ZXL9	Pseudomonas_virus	3.5e-22	73.1
WP_060741305.1\|4594495_4594957_-\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	3.4e-46	60.1
WP_060741306.1\|4595061_4595760_-\|terminase	terminase	Q9ZXM2	Pseudomonas_virus	2.3e-78	65.7
WP_060741307.1\|4595770_4596778_-\|capsid	phage major capsid protein, P2 family	A0A077KEQ8	Ralstonia_phage	3.2e-121	63.9
WP_060741308.1\|4596797_4597628_-\|capsid	GPO family capsid scaffolding protein	Q9ZXM4	Pseudomonas_virus	1.6e-70	51.1
WP_060741309.1\|4597766_4599521_+\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	1.0e-284	80.5
WP_060741310.1\|4599520_4600522_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	1.2e-136	73.0
4606927:4606953	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4968120 : 4974623

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025213005.1\|4968120_4969401_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	9.7e-99	53.9
WP_060741566.1\|4969401_4970796_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_060741567.1\|4971152_4972157_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_060741568.1\|4972245_4973247_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	5.7e-163	83.8
WP_060741569.1\|4973243_4973579_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.6e-45	81.1
WP_060741570.1\|4973575_4973869_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.4e-29	65.7
WP_060741571.1\|4973868_4974231_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.5e-41	70.8
WP_060743167.1\|4974230_4974623_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	4.2e-53	79.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012831

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection