CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012937	Bacteroides thetaiotaomicron strain 7330 chromosome, complete genome	0 crisprs	cas3,PrimPol,PD-DExK,WYL,RT,DEDDh,csa3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2822553 : 2836586

Cellulophaga_phage(16.67%)

portal,terminase,integrase,head,capsid,protease

attL 2817197:2817210|attR 2824605:2824618

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2817197:2817210	attL	NA	NA	NA	NA
WP_062694985.1\|2822553_2824188_+\|integrase	phage integrase SAM-like domain-containing protein	R9ZYY8	Cellulophaga_phage	3.1e-17	26.5
WP_167541986.1\|2824454_2824622_-	hypothetical protein	NA	NA	NA	NA
2824605:2824618	attR	NA	NA	NA	NA
WP_062694988.1\|2824640_2825132_-	hypothetical protein	NA	NA	NA	NA
WP_062694990.1\|2825388_2827203_-	hypothetical protein	NA	NA	NA	NA
WP_062694992.1\|2827681_2828176_-	hypothetical protein	NA	NA	NA	NA
WP_118023947.1\|2828242_2828899_+	hypothetical protein	NA	NA	NA	NA
WP_081013450.1\|2828876_2829188_-	HNH endonuclease	A0A075M5R4	Enterococcus_phage	3.3e-08	41.2
WP_062694995.1\|2829153_2829699_-	hypothetical protein	NA	NA	NA	NA
WP_062694997.1\|2829655_2829952_-	hypothetical protein	NA	NA	NA	NA
WP_062694999.1\|2830106_2830496_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_062695933.1\|2830495_2832118_+\|terminase	terminase large subunit	A0A0A8WI49	Clostridium_phage	8.1e-58	31.8
WP_062695001.1\|2832117_2833350_+\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	4.3e-43	33.0
WP_062695003.1\|2833324_2834800_+	hypothetical protein	NA	NA	NA	NA
WP_055269423.1\|2834817_2835369_+\|head,protease	HK97 family phage prohead protease	A0A2H4J792	uncultured_Caudovirales_phage	2.6e-24	41.8
WP_062695005.1\|2835365_2836586_+\|capsid	phage major capsid protein	A0A088FRT0	Escherichia_phage	1.9e-27	30.5

DBSCAN-SWA_2

4391021 : 4400293

Cafeteria_roenbergensis_virus(16.67%)

integrase

attL 4391006:4391032|attR 4394778:4394804

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4391006:4391032	attL	NA	NA	NA	NA
WP_081013553.1\|4391021_4392185_+	restriction endonuclease subunit S	E3T4D5	Cafeteria_roenbergensis_virus	3.9e-14	31.9
WP_081013476.1\|4392179_4392647_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_008764673.1\|4392710_4393514_+\|integrase	tyrosine-type recombinase/integrase	A0A0H4TI16	Erysipelothrix_phage	2.5e-20	31.8
WP_062695969.1\|4393543_4394842_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	2.8e-21	30.2
4394778:4394804	attR	NA	NA	NA	NA
WP_008764671.1\|4395031_4396162_-	DUF1016 family protein	Q9JMP5	Wolbachia_phage	1.9e-26	27.3
WP_008764670.1\|4396165_4397584_-	type I restriction-modification system subunit M	A0A220A2U4	Liberibacter_phage	4.5e-28	27.0
WP_062695497.1\|4397587_4400293_-	DEAD/DEAH box helicase family protein	A0A2I7SC38	Paenibacillus_phage	1.6e-13	23.6

DBSCAN-SWA_3

5204316 : 5257110

unidentified_phage(42.86%)

integrase,transposase

attL 5234960:5234977|attR 5257801:5257818

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081013489.1\|5204316_5204706_-\|integrase	tyrosine-type recombinase/integrase	H7BUI8	unidentified_phage	9.1e-08	51.8
WP_004311259.1\|5204822_5206052_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	4.9e-23	31.4
WP_062695710.1\|5206071_5207283_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	6.7e-17	27.4
WP_005821412.1\|5207556_5209371_+	recombinase family protein	A0A2K5B2B2	Erysipelothrix_phage	6.8e-13	24.5
WP_062695984.1\|5209428_5210274_+	hypothetical protein	NA	NA	NA	NA
WP_007484602.1\|5210535_5211444_+	hypothetical protein	NA	NA	NA	NA
WP_007484600.1\|5212141_5212957_+	hypothetical protein	NA	NA	NA	NA
WP_007484599.1\|5213314_5214334_+	DUF3871 family protein	NA	NA	NA	NA
WP_062695712.1\|5214421_5214868_+	JAB domain-containing protein	NA	NA	NA	NA
WP_062695713.1\|5215018_5215606_+\|integrase	tyrosine-type recombinase/integrase	R9ZX86	Cellulophaga_phage	2.7e-19	37.3
WP_081013490.1\|5215541_5215751_-	hypothetical protein	NA	NA	NA	NA
WP_007484595.1\|5216367_5217123_+	hypothetical protein	NA	NA	NA	NA
WP_007484594.1\|5217129_5218368_+	hypothetical protein	NA	NA	NA	NA
WP_005821429.1\|5218432_5218804_-	DMT family protein	NA	NA	NA	NA
WP_062695715.1\|5218829_5219042_-	hypothetical protein	NA	NA	NA	NA
WP_032849094.1\|5219054_5219258_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005651718.1\|5219391_5219583_-	hypothetical protein	NA	NA	NA	NA
WP_004311262.1\|5219556_5219724_+	hypothetical protein	NA	NA	NA	NA
WP_004311263.1\|5219919_5223468_+	class I SAM-dependent DNA methyltransferase	A0A1B1IUC6	uncultured_Mediterranean_phage	2.5e-11	26.3
WP_005651724.1\|5223394_5224126_-\|transposase	transposase	NA	NA	NA	NA
WP_004311265.1\|5224535_5226728_-	hypothetical protein	NA	NA	NA	NA
WP_004311266.1\|5226730_5228932_-	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_005651733.1\|5228938_5231113_-	hypothetical protein	NA	NA	NA	NA
WP_062695717.1\|5231143_5232706_-	hypothetical protein	NA	NA	NA	NA
WP_004312956.1\|5232729_5234001_-	DUF4876 domain-containing protein	NA	NA	NA	NA
WP_005829323.1\|5234014_5236999_-	TonB-dependent receptor	NA	NA	NA	NA
5234960:5234977	attL	NA	NA	NA	NA
WP_004327093.1\|5237795_5239676_-	carboxypeptidase-like regulatory domain-containing protein	NA	NA	NA	NA
WP_153862836.1\|5240663_5240825_+	hypothetical protein	NA	NA	NA	NA
WP_004311277.1\|5240933_5241722_-	ParA family protein	NA	NA	NA	NA
WP_004315818.1\|5241797_5242202_-	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_004327094.1\|5242231_5242648_-	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_062695985.1\|5242769_5242979_+	hypothetical protein	NA	NA	NA	NA
WP_004327095.1\|5243361_5243634_+	hypothetical protein	NA	NA	NA	NA
WP_004289236.1\|5243562_5244129_-	hypothetical protein	NA	NA	NA	NA
WP_004289235.1\|5244125_5244884_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	4.5e-11	27.1
WP_004311292.1\|5244880_5245861_-	iron ABC transporter permease	NA	NA	NA	NA
WP_004289233.1\|5245861_5247001_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004311295.1\|5247012_5249091_-	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_004289231.1\|5249109_5250114_-	hypothetical protein	NA	NA	NA	NA
WP_004311297.1\|5250238_5252329_-	lipoprotein	NA	NA	NA	NA
WP_004289229.1\|5252343_5254089_-	cell surface protein	NA	NA	NA	NA
WP_004289228.1\|5254189_5255107_-	DUF4465 domain-containing protein	NA	NA	NA	NA
WP_004289226.1\|5255840_5256170_-	hypothetical protein	NA	NA	NA	NA
WP_004289225.1\|5256216_5257110_-\|integrase	phage integrase SAM-like domain-containing protein	NA	NA	NA	NA
5257801:5257818	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage