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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012938 Bacteroides ovatus strain ATCC 8483 chromosome, complete genome 2 crisprs PrimPol,RT,DEDDh,WYL,PD-DExK,cas3 2 1 5 2

Results visualization

1. NZ_CP012938
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012938_1 5173900-5174037 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012938_2 6053333-6053409 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP012938_1 1.3|5173999|21|NZ_CP012938|CRT 5173999-5174019 21 NZ_CP012938.1 5173687-5173707 1 0.952
NZ_CP012938_1 1.3|5173999|21|NZ_CP012938|CRT 5173999-5174019 21 NZ_CP012938.1 5173813-5173833 1 0.952
NZ_CP012938_1 1.1|5173918|21|NZ_CP012938|CRT 5173918-5173938 21 NZ_CP012938.1 5173687-5173707 2 0.905
NZ_CP012938_1 1.1|5173918|21|NZ_CP012938|CRT 5173918-5173938 21 NZ_CP012938.1 5173813-5173833 2 0.905

1. spacer 1.3|5173999|21|NZ_CP012938|CRT matches to position: 5173687-5173707, mismatch: 1, identity: 0.952

caacgtccttcttacaaccgt	CRISPR spacer
caacgtccttcttacaatcgt	Protospacer
*****************.***

2. spacer 1.3|5173999|21|NZ_CP012938|CRT matches to position: 5173813-5173833, mismatch: 1, identity: 0.952

caacgtccttcttacaaccgt	CRISPR spacer
caacgtccttcttacaatcgt	Protospacer
*****************.***

3. spacer 1.1|5173918|21|NZ_CP012938|CRT matches to position: 5173687-5173707, mismatch: 2, identity: 0.905

caacgtccttcctacaaccgt	CRISPR spacer
caacgtccttcttacaatcgt	Protospacer
***********.*****.***

4. spacer 1.1|5173918|21|NZ_CP012938|CRT matches to position: 5173813-5173833, mismatch: 2, identity: 0.905

caacgtccttcctacaaccgt	CRISPR spacer
caacgtccttcttacaatcgt	Protospacer
***********.*****.***

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 NZ_LR134423 Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 14 2866-2896 7 0.774
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 NC_007501 Lactobacillus phage Lc-Nu, complete genome 30638-30668 7 0.774
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 AY131267 Bacteriophage Lc-Nu, complete genome 30638-30668 7 0.774
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 MH983004 Lactobacillus phage BH1, complete genome 32670-32700 7 0.774
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 NZ_CP004877 Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence 52386-52416 7 0.774
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 NZ_CP045273 Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence 1065035-1065065 8 0.742
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 NZ_CP013615 Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence 67130-67160 8 0.742
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 NZ_CP014173 Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence 37911-37941 8 0.742
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 AP013657 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S32-C172, *** SEQUENCING IN PROGRESS *** 3482-3512 9 0.71
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 MH791414 UNVERIFIED: Aeromonas phage Aswh_1, complete genome 66404-66434 9 0.71
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 AP014421 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S43-C174, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces 8851-8881 9 0.71
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 AP013664 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S45-C223, *** SEQUENCING IN PROGRESS *** 5115-5145 9 0.71
NZ_CP012938_2 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder 6053356-6053386 31 AP013658 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S33-C129, *** SEQUENCING IN PROGRESS *** 4640-4670 9 0.71

1. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to NZ_LR134423 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 14) position: , mismatch: 7, identity: 0.774

attcttttgattgaaatatatttgtctgaaa	CRISPR spacer
ttttatttgattgaaatatttttgcctggat	Protospacer
 **. ************** ****.***.* 

2. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to NC_007501 (Lactobacillus phage Lc-Nu, complete genome) position: , mismatch: 7, identity: 0.774

attcttttgattgaaatatatttgtctgaaa	CRISPR spacer
atcgttttgaatgaaatatacttgtctagca	Protospacer
**. ****** *********.******.. *

3. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to AY131267 (Bacteriophage Lc-Nu, complete genome) position: , mismatch: 7, identity: 0.774

attcttttgattgaaatatatttgtctgaaa	CRISPR spacer
atcgttttgaatgaaatatacttgtctagca	Protospacer
**. ****** *********.******.. *

4. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 7, identity: 0.774

attcttttgattgaaatatatttgtctgaaa	CRISPR spacer
atcgttttgaatgaaatatacttgtctagca	Protospacer
**. ****** *********.******.. *

5. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 7, identity: 0.774

attcttttgattgaaatatatttgtctgaaa----	CRISPR spacer
tttcttttgattttaatatatt----tgaaatatt	Protospacer
 ***********  ********    *****    

6. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.742

attcttttgattgaaatatatttgtctgaaa	CRISPR spacer
tttctttttattgaattatatttgagcgcta	Protospacer
 ******* ****** ********  .*  *

7. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 8, identity: 0.742

attcttttgattgaaatatatttgtctgaaa	CRISPR spacer
attcttctgatttaaatatatttttaatatc	Protospacer
******.***** ********** *   *  

8. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to NZ_CP014173 (Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence) position: , mismatch: 8, identity: 0.742

attcttttgattgaaatatatttg----tctgaaa	CRISPR spacer
cttcttttaattcaaatatatttgataattt----	Protospacer
 *******.*** ***********    *.*    

9. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to AP013657 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S32-C172, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.71

attcttttgattgaaatatatttgtctgaaa	CRISPR spacer
tttctcttgatagaaatatatttgataaacc	Protospacer
 ****.***** ************ . .*  

10. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to MH791414 (UNVERIFIED: Aeromonas phage Aswh_1, complete genome) position: , mismatch: 9, identity: 0.71

attcttttgattgaaatatatttgtctgaaa	CRISPR spacer
acccttttgattgacatatatttttcctttt	Protospacer
*..*********** ******** **.    

11. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to AP014421 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S43-C174, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.71

attcttttgattgaaatatatttgtctgaaa	CRISPR spacer
tttctcttgatagaaatatatttgataaacc	Protospacer
 ****.***** ************ . .*  

12. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to AP013664 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S45-C223, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.71

attcttttgattgaaatatatttgtctgaaa	CRISPR spacer
tttctcttgatagaaatatatttgataaacc	Protospacer
 ****.***** ************ . .*  

13. spacer 2.1|6053356|31|NZ_CP012938|CRISPRCasFinder matches to AP013658 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S33-C129, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.71

attcttttgattgaaatatatttgtctgaaa	CRISPR spacer
tttctcttgatagaaatatatttgataaacc	Protospacer
 ****.***** ************ . .*  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 469572 : 506220 53 Bacteroides_phage(12.5%) terminase,head,integrase,portal,transposase attL 474896:474911|attR 500116:500131
DBSCAN-SWA_2 2916921 : 3005686 60 Stx2-converting_phage(18.18%) integrase,transposase attL 2924630:2924645|attR 3003891:3003906
DBSCAN-SWA_3 5136941 : 5182959 33 Staphylococcus_phage(20.0%) protease,tRNA,transposase NA
DBSCAN-SWA_4 5290454 : 5370159 59 unidentified_phage(25.0%) integrase,tRNA,transposase attL 5308430:5308445|attR 5376297:5376312
DBSCAN-SWA_5 5507176 : 5515959 8 Listeria_phage(16.67%) NA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP012938.1|WP_004295672.1|1244635_1245058_-|PcfK-like-family-protein 1244635_1245058_- 140 aa aa 40 NA NA No NA
NZ_CP012938.1|WP_004297160.1|5142831_5143077_-|RNA-binding-protein 5142831_5143077_- 81 aa aa NA NA NA 5136941-5182959 yes