CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT904891	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 chromosome 1	2 crisprs	WYL,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas3,c2c9_V-U4,DinG	1	4	13	0
NZ_LT904892	Salmonella enterica subsp. enterica serovar Typhi strain 80-2002 plasmid 2	0 crisprs	DEDDh	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT904891_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT904891_1

1534842-1535262

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_LT904891_1

>merge|NZ_LT904891|1|1534842-1535262|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACGGACAGCAACCCGTGTCGGATATCAGACAGATCGGTTTATCCCCGCTGGCGCGGGGAACACACGCGAATCGCCAATCGCCGCCGCGTGAATTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCACGATGTATGCCGACCGTGATTTTTACCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGATACGCCTTTACGTCGCCCTCTTTGGCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACATTAAAAAAGATTAATGTTGGTTATAGTTTTACGGTTTATCCCCGCTGGTGCGGGGAACACTAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_LT904891|1|1|1534842-1535236|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>NZ_LT904891|1|1|1534842-1535236|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>NZ_LT904891|1|1|1534903-1535262|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT904891.1\|WP_000366321.1\|1539698_1541234_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_LT904891.1\|WP_001681565.1\|1537998_1539057_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_LT904891.1\|WP_000741649.1\|1528975_1529686_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_LT904891.1\|WP_000062282.1\|1535346_1535640_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_LT904891.1\|WP_000372384.1\|1532621_1533530_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_LT904891.1\|WP_000490486.1\|1533780_1534827_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_LT904891.1\|WP_000080392.1\|1545713_1546448_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_LT904891.1\|WP_001219244.1\|1528496_1528976_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_LT904891.1\|WP_000666425.1\|1537263_1537989_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_LT904891.1\|WP_000134253.1\|1527450_1528500_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_LT904891.1\|WP_000281411.1\|1536559_1537264_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NZ_LT904891.1\|WP_000118669.1\|1535642_1536560_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_LT904891.1\|WP_001173663.1\|1530580_1531186_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_LT904891.1\|WP_001145541.1\|1544672_1545626_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_LT904891.1\|WP_001537530.1\|1530206_1530530_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_LT904891.1\|WP_001291998.1\|1546523_1548236_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_LT904891.1\|WP_001221538.1\|1526708_1527470_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_LT904891.1\|WP_000517480.1\|1529704_1530016_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_LT904891.1\|WP_001092273.1\|1531172_1532612_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_LT904891.1\|WP_000935107.1\|1539079_1539682_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193

Protein	Function_ID	Function_description	E-value
NZ_LT904891.1\|WP_000366321.1\|1539698_1541234_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_LT904891.1\|WP_001681565.1\|1537998_1539057_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.49739e-119
NZ_LT904891.1\|WP_000741649.1\|1528975_1529686_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NZ_LT904891.1\|WP_000062282.1\|1535346_1535640_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
NZ_LT904891.1\|WP_000372384.1\|1532621_1533530_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_LT904891.1\|WP_000490486.1\|1533780_1534827_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_LT904891.1\|WP_000080392.1\|1545713_1546448_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.17372e-138
NZ_LT904891.1\|WP_001219244.1\|1528496_1528976_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_LT904891.1\|WP_000666425.1\|1537263_1537989_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27863e-48
NZ_LT904891.1\|WP_000134253.1\|1527450_1528500_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_LT904891.1\|WP_000281411.1\|1536559_1537264_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.23447e-89
NZ_LT904891.1\|WP_000118669.1\|1535642_1536560_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.77553e-155
NZ_LT904891.1\|WP_001173663.1\|1530580_1531186_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_LT904891.1\|WP_001145541.1\|1544672_1545626_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_LT904891.1\|WP_001537530.1\|1530206_1530530_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_LT904891.1\|WP_001291998.1\|1546523_1548236_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_LT904891.1\|WP_001221538.1\|1526708_1527470_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_LT904891.1\|WP_000517480.1\|1529704_1530016_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_LT904891.1\|WP_001092273.1\|1531172_1532612_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_LT904891.1\|WP_000935107.1\|1539079_1539682_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39

>NZ_LT904891.1|WP_000490486.1|1533780_1534827_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_LT904891.1|WP_000372384.1|1532621_1533530_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_LT904891.1|WP_001092273.1|1531172_1532612_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_LT904891.1|WP_001173663.1|1530580_1531186_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_LT904891.1|WP_001537530.1|1530206_1530530_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_LT904891.1|WP_000517480.1|1529704_1530016_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_LT904891.1|WP_000741649.1|1528975_1529686_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_LT904891.1|WP_001219244.1|1528496_1528976_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_LT904891.1|WP_000134253.1|1527450_1528500_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_LT904891.1|WP_001221538.1|1526708_1527470_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_LT904891.1|WP_000062282.1|1535346_1535640_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NZ_LT904891.1|WP_000118669.1|1535642_1536560_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDSGHRST
>NZ_LT904891.1|WP_000281411.1|1536559_1537264_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NZ_LT904891.1|WP_000666425.1|1537263_1537989_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_LT904891.1|WP_001681565.1|1537998_1539057_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_LT904891.1|WP_000935107.1|1539079_1539682_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>NZ_LT904891.1|WP_000366321.1|1539698_1541234_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_LT904891.1|WP_001145541.1|1544672_1545626_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_LT904891.1|WP_000080392.1|1545713_1546448_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWAQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_LT904891.1|WP_001291998.1|1546523_1548236_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKYPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDIQASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE

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Crispr_ID: NZ_LT904891_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT904891_2

2395878-2395981

Unclear

Consensus_repeat	Method
GTAGACCCTGATCCAGTAGACCCGGTTATCCCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT904891_2

>merge|NZ_LT904891|2|2395878-2395981|CRISPRCasFinder
ATTATTCCTGATCCGGTAGACCCTGTTATTCCTGACCCTGTCATTCCCGATCCGGTAGACCCTGATCCAGTAGACCCGGTTATCCCTGACCCTGTTATTCCCGA

>NZ_LT904891|2|2|2395878-2395981|CRISPRCasFinder
ATTATTCCTGATCCGGTAGACCCTGTTATTCCTGA	CCCTGTCATTCCCGATCCGGTAGACCCTGATCCA
GTAGACCCGGTTATCCCTGACCCTGTTATTCCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT904891.1\|WP_000188469.1\|2408061_2409171_-\|D-glucosaminate-6-phosphate-ammonia-lyase	unknown	unknown	gnl\|CDD\|273623
NZ_LT904891.1\|WP_000834259.1\|2386093_2387476_-\|glycoside-pentoside-hexuronide-family-transporter	unknown	unknown	gnl\|CDD\|183145
NZ_LT904891.1\|WP_000106461.1\|2399266_2399947_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NZ_LT904891.1\|WP_000392697.1\|2404008_2404704_-\|MgtC-family-protein	unknown	unknown	gnl\|CDD\|185283
NZ_LT904891.1\|WP_000984810.1\|2393494_2394112_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225360
NZ_LT904891.1\|WP_000749532.1\|2406154_2407096_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_LT904891.1\|WP_000462255.1\|2379007_2380213_-\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|129314
NZ_LT904891.1\|WP_077905080.1\|2398534_2398648_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT904891.1\|WP_000535970.1\|2405209_2406112_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_LT904891.1\|WP_000389730.1\|2390748_2391777_+\|virulence-RhuM-family-protein	unknown	unknown	gnl\|CDD\|226452
NZ_LT904891.1\|WP_001521985.1\|2397150_2397615_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT904891.1\|WP_000766661.1\|2381951_2383661_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957
NZ_LT904891.1\|WP_001186143.1\|2407331_2408075_-\|2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|188342
NZ_LT904891.1\|WP_000131278.1\|2401062_2403789_-\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|237914
NZ_LT904891.1\|WP_001224082.1\|2392627_2392765_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366690
NZ_LT904891.1\|WP_000115428.1\|2380439_2381831_+\|xanthine/proton-symporter-XanP	unknown	unknown	gnl\|CDD\|273276
NZ_LT904891.1\|WP_000120781.1\|2388175_2388520_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT904891.1\|WP_000173551.1\|2389081_2389678_+\|TIGR02646-family-protein	unknown	unknown	gnl\|CDD\|131694
NZ_LT904891.1\|WP_001082117.1\|2400948_2401041_-\|protein-MgtR	unknown	unknown	unknown
NZ_LT904891.1\|WP_000703001.1\|2383763_2386082_-\|alpha-xylosidase	unknown	unknown	gnl\|CDD\|236731

Protein	Function_ID	Function_description	E-value
NZ_LT904891.1\|WP_000389730.1\|2390748_2391777_+\|virulence-RhuM-family-protein	gnl\|CDD\|226452	COG3943, COG3943, Virulence protein [General function prediction only].	1.16306e-179
NZ_LT904891.1\|WP_000834259.1\|2386093_2387476_-\|glycoside-pentoside-hexuronide-family-transporter	gnl\|CDD\|183145	PRK11462, PRK11462, putative transporter; Provisional.	0
NZ_LT904891.1\|WP_000131278.1\|2401062_2403789_-\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|237914	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.	0
NZ_LT904891.1\|WP_000392697.1\|2404008_2404704_-\|MgtC-family-protein	gnl\|CDD\|185283	PRK15385, PRK15385, MgtC family protein.	2.31193e-154
NZ_LT904891.1\|WP_000984810.1\|2393494_2394112_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	0.00303367
NZ_LT904891.1\|WP_000749532.1\|2406154_2407096_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	1.71469e-143
NZ_LT904891.1\|WP_000462255.1\|2379007_2380213_-\|sodium/glutamate-symporter	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_LT904891.1\|WP_000535970.1\|2405209_2406112_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.62239e-50
NZ_LT904891.1\|WP_000106461.1\|2399266_2399947_+\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	3.05871e-58
NZ_LT904891.1\|WP_000766661.1\|2381951_2383661_+\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	1.5513e-21
NZ_LT904891.1\|WP_000188469.1\|2408061_2409171_-\|D-glucosaminate-6-phosphate-ammonia-lyase	gnl\|CDD\|273623	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. [Unknown function, Enzymes of unknown specificity].	0
NZ_LT904891.1\|WP_001186143.1\|2407331_2408075_-\|2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|188342	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	1.22815e-128
NZ_LT904891.1\|WP_000115428.1\|2380439_2381831_+\|xanthine/proton-symporter-XanP	gnl\|CDD\|273276	TIGR00801, Uric_acid_permease, uracil-xanthine permease. The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40) Most of the functionally characterized members of the NCS2 family are transporters specific for nucleobases including both purines and pyrimidines. However, two closely related rat members of the family, SVCT1 and SVCT2, localized to different tissues of the body, cotransport L-ascorbate and Na+ with a high degree of specificity and high affinity for the vitamin. The NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39). [Transport and binding proteins, Nucleosides, purines and pyrimidines].	2.19228e-145
NZ_LT904891.1\|WP_001224082.1\|2392627_2392765_+\|hypothetical-protein	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	0.000244363
NZ_LT904891.1\|WP_000173551.1\|2389081_2389678_+\|TIGR02646-family-protein	gnl\|CDD\|131694	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein. Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins. [Hypothetical proteins, Conserved].	6.10019e-19
NZ_LT904891.1\|WP_000703001.1\|2383763_2386082_-\|alpha-xylosidase	gnl\|CDD\|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0

>NZ_LT904891.1|WP_000984810.1|2393494_2394112_+|helix-turn-helix-transcriptional-regulator
MMRKPSQIVHCISCDLSCQLFPDSAVRVQYCHNAAFSIWPDGNAFLKKGFIEKLLLDRHNHLSSGFIFVDFSFPNLRRFTDLQWADSLANSGMHIVLISDRSLTPLANYWILKSNKIQGIIYSDDDDIVQQQKMHRLFTGRLANSKRGRTLNYTEFILLKHFVSGISIQQIVNIDNIDIKKLYVHKLRLENKLGHSIHKIISNIL
>NZ_LT904891.1|WP_001224082.1|2392627_2392765_+|hypothetical-protein
MRKARLTEHQNIAVIKLVEAGRAVKDICQEADISEVTDDIYGHWV
>NZ_LT904891.1|WP_000389730.1|2390748_2391777_+|virulence-RhuM-family-protein
MEDKYLTQSPAGEFIMFASGDGKVRVECRFESNTLWLSQGMICELYGKAKATISEHIKNIFADGELEENSVVRFYRTTASDGKNYQIQYFSLPLILAVGYRVRSPRGTQFRQWATQTLQEYLIKGFVMDDERLKNPPVGSSAVPDYFDEMLERIRDIRASERRVYLRVREIFALAADYQPSLKETTQFFQTIQNKLHFACTGYTAAELIHQRADACQPHMGLTSYKGEEVRKCDVTVAKNYLTQDEVSELNRVVNMWLDFAEDQARRRQQVFLRDWQDKLDQFLQFNDREVLQGAGKVSKKMADEKAQAEYSQFAEQQRRLKEAEGEKDIAALLQWKTEPKK
>NZ_LT904891.1|WP_000173551.1|2389081_2389678_+|TIGR02646-family-protein
MTLLLNEQYHLCCYSEIRADLRGLGYHIEHVENKSQQPGRTFDYQNLAASALDSENGLPQLGINTFGGHVQGKNKSVDMAQFIHCHLPDCSRYFAYLSNGHVVPSIDLTEQEAEYAQYTIDHLNLNSGFLQTERRNHWEELEQLFEEHIEKDWDLHQLLQLDLVPSPDHKLHEFFSITRQFFQQEAEQVLQSHAPALI
>NZ_LT904891.1|WP_000120781.1|2388175_2388520_-|hypothetical-protein
MSYKYVGKHGCDVALRMGYKEYPDENAYGDAYYIKDGLKWIFNITGLKKRLGVYSDDDLRKQNYDVDTYYRVENQQEESADDEMQSLYHNLAVEEGEPVYLEGGMYLYPDGSIR
>NZ_LT904891.1|WP_000834259.1|2386093_2387476_-|glycoside-pentoside-hexuronide-family-transporter
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILNILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNALLAVISVAMFFVPMHATIAMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFTHKELQN
>NZ_LT904891.1|WP_000703001.1|2383763_2386082_-|alpha-xylosidase
MKISDGNWLIQPGLNLIHPVQVFDVEQHGNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGVIGVRMEHFQGALDNGPHYPLNVLQDINVEMQNNAEFAELKSGSLSVRVTKGELWSLDFLRNGVRITGSQLKNNGYVQDTNSGRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQSYKNIPFYITNRGYGVLVNHPQCVSFEIGSEKVSKVQFSVESEYLEYFVIDGPTPKDVLNRYTQFTGRPALPPAWSFGLWLTTSFTTNYDEATVNRFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPVTFPDPKGMIHRLKAKGLKVCVWINPYIGQKSPVFQELKEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPQACEWYADKLKGLVEMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKETVGVEEAVLFARSASVGAQQFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTEQKCRMMPYLYREAARANEAGTPMMRAMMLEFPDDPACDYLDRQYMLGDAVMVAPVFSEAGDVEFYLPEGRWTHLWRNDEVQGSRWHKQQHDFLSLPVYVRDNTLLALGNNSQKPDYAWHEGTAFQLFHLDDGCEAVCEVPATDGSTIFTLQAKRTGNTITVSGEGEARNWTLCLRNITQISGTKCGSYAGSELGVVVTPQGNEVVITL
>NZ_LT904891.1|WP_000766661.1|2381951_2383661_+|AsmA-family-protein
MKLIGRLLLYVLIACLVVIFGFYFLLQTRWGADHVSNWVSENSGYHLTFDVMDHRFSAPSHLLLENVTFGRDGQPATLVAKTVDIGLSIRQLTAPLHVDTILLQDGTLNISVQTAPFPFEADRLQLRNMALNSPGSEWRLSAQRVNGGVMPWRPEAGRVLGNKAQIQLSAGSLTLNDVPATNVLIEGSIDHDQMMLNTVGADMARGALTGVARRNADGSWVVENLRLNDIRLQSDKSLSEFFAPLTTVPSLQIGRLEVTDSSLQGPDWAVTDLDLSLRNLTLRKEDWQSQEGKLSMNASEFIYGSLHLLDPILNAEFSPQGVALRQFTTRWEGGMVRTSGAWLRESKALILDDTAIAGLEYTLPENWKQLWMKPLPDWLNSLTLKKFSASRNLVIDIDPTFPWQITALDGYGANLELVQHHQWGVWSGNATLNAAAATFNRVDVRRPSLSLTANASTVNISDLSAFTEKGILEATASVSQQPQRQTQISLNGRGVPMDVLQQWGWPALPIAGDGNIQFTASGNIQADAPLKPTVNGQLHAVNAQKQQIMQTMQAGVVSGGEVTSTEPAL
>NZ_LT904891.1|WP_000115428.1|2380439_2381831_+|xanthine/proton-symporter-XanP
MSVNAIEPADAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLLAMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQGTSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVLSRILHLARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLAIIILLNRQRNPYLRVASLVIAMAAGYLLAWFMGMLPENNAPVSQDILMVPTPLYYGLGIDWNLLLPLMLVFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPQILQFAPEWVKNLLSSGIAAGGITAIVLNLILPPEKP
>NZ_LT904891.1|WP_000462255.1|2379007_2380213_-|sodium/glutamate-symporter
MFELDTLSTLVAATLVLLLGRKLVQSVSLLKKYTIPEPVAGGLLVAVALLVLKKSVGWEVNFDMTLRDPLMLAFFATIGLNANLASLRKGGRVVGVFLVVVVGLLLMQNAIGIGMASLLGLDPLMGLIAGSITLSGGHGTGAAWSKLFVERYGFASATEVAMACATFGLVLGGLIGGPVARYLVKHSTTPDGMPDDQAVPTAFEKPDVGRMITSLVLIETIALIAICLTVGKIVAQLLAGTVLELPVFVCVLFVGVILSNGLALVGFYRVFERAVSVLGNVSLSLFLAMALMSLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYDAAVLAAGHCGFGLGATPTAIANMQAITDRFGPSHMAFLVVPMVGAFFIDIVNALVIKLYLMLPIFAQ
>NZ_LT904891.1|WP_001521985.1|2397150_2397615_-|hypothetical-protein
MLACLTLLFLGVGLGHLFHLYTEKNRDPEKCTAPVIVFYNNTQANLTLDFMYSLKKRTGVVSISGTYYVDNKMSGVIRRDVSYVWSENKDSTHFISTDINKVTRDETLSDAVIETVLPDFYVYPGKSISYTILTQGHRGFMFTIGKRPIFFCTH
>NZ_LT904891.1|WP_077905080.1|2398534_2398648_-|hypothetical-protein
MIFSPQYKTGGLTNKKTKRTFTPESAIMRKAVSTLTC
>NZ_LT904891.1|WP_000106461.1|2399266_2399947_+|isochorismatase-family-protein
MSTPANFNGQRPAIDANDAVMLLIDHQSGLFQTVGDMPMPELRARAAALAKIATLCNMPVITTASVPQGPNGPLIPEIHANAPHAQYVARKGEINAWDNADFVQAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITMARVVQAGVVPMDTAAVASELQRTWNREDAAEWADVYTKIFPAYQLLIESYTKAQEVVKNNELLDSQRA
>NZ_LT904891.1|WP_001082117.1|2400948_2401041_-|protein-MgtR
MNRSPDKIIALIFLLISLLVLCLALWQIVF
>NZ_LT904891.1|WP_000131278.1|2401062_2403789_-|magnesium-translocating-P-type-ATPase
MTDMNIENRKLNRPASENDKQHKKVFPIEAEAFHSPEETLARLNSHRQGLTIEEAGERLKVYGRNEVAHEQVPPVLVQLLQAFNNPFIYVLMALAGVSFITDYWLPLRRGEETDLTGVLIILTMVSLSGLLRFWQEFRTNRAAQALKKMVRTTATMLRRGPGNIGAVQEEIPIEELVPGDVVFLAAGDLVPADVRLLASRDLFISQLILSGESLPVEKYDVMADVAGKDSEQLPDKDKSLLDLGNICLMGTNVTSGRAQAVVVATGSRTWFGSLAKSIVGTRTQTAFDRGVNSVSWLLIRFMLIMVPVVLLINGFSKGDWVEASLFALAVAVGLTPEMLPMIVSSNLAKGAIAMSRRKVIVKRLNAIQNFGAMDVLCTDKTGTLTQDNIFLEHHLDVSGVKSSRVLMLAWLNSSSQSGARNVMDRAILRFGEGRIAPSTKARFIKRDELPFDFVRRRVSVLVEDAQHGDRCLICKGAVEEMMMVATHLREGDRVVALTETRRELLLAKTEDYNAQGFRVLLIATRKLDGSGNNPTLSVEDETELTIEGMLTFLDPPKESAGKAIAALRDNGVAVKVLTGDNPVVTARICLEVGIDTHDILIGTQVEAMSDAELASEVEKRAVFARLTPLQKTRILQALQKNGHTVGFLGDGINDAPALRDADVGISVDSAADIAKESSDIILLEKDLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNVFSVLVASAFIPFLPMLAIHLLIQNLMYDISQLSLPWDKMDKEFLRKPRKWDAKNIGRFMLWIGPTSSIFDITTFALMWYVFAANNVEAQALFQSGWFIEGLLSQTLVVHMLRTQKIPFIQSRATLPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLPLSYFPWLVATLLSYCLVAQGMKRFYIKRFGQWF
>NZ_LT904891.1|WP_000392697.1|2404008_2404704_-|MgtC-family-protein
MEERMLMFPYILNLLAAMLLGALIGAERQWRQRMAGLRTNALVATGAAVFILSSMTTSPDSPGRIAAQIVSGIGFLGAGVIMREGMNVRGLNTAATLWCSAGIGVLCGLGQFKNALAATIIILCANILLREAAQRINQLPVSAEAEKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIHWSIDSQ
>NZ_LT904891.1|WP_000535970.1|2405209_2406112_+|EamA-family-transporter
MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSRMSSQFLTMIRLLFAGLILVTFSFMHGDKIFSILKNRKDALSLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFALARRTRPGILVLTAILTSLIGTFLLVTHGNPTSLSISSGALFWGIASAFAAAFYTTWPSRLIAQYGTLPVVGWSMSFGGLILLPFYAKEGTHFAVSGSLILAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGISFTLPDWLGTLLILSSVILISLDSRRRARAA
>NZ_LT904891.1|WP_000749532.1|2406154_2407096_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKKSPTSTPHDAVFKTFLRHPDTARDFLNIHLPHLLRIRCDLTTLKLAPDSFIEKNLRAFYSDVLWSLKTCEGDGYIYVVIEHQSTPDAHMAFRLMCYATAAMQRHLDAGHKTLPLVIPMLFYHGAKSPYPFSLCWLDEFGDPALARQLYATAFPLVDITVVPDNEIMQHRRIAMLELVQKHIRQRDLMGLVERLAVLLITGNANDSQLKALFNYLLIQHGSTPRFGKFIREVARCVPQHKERLMTIVDRIRESGRRKGKREGVQQGIQQGIHQGKQEEALRIAHTMLEQGIEREMVLMITGLSDEEIKAKRH
>NZ_LT904891.1|WP_001186143.1|2407331_2408075_-|2-dehydro-3-deoxy-phosphogluconate-aldolase
MQQINFYRQRVAINVLAKDIANAKAIYEAAEGHAVIGVLSAQFATVEEGVPEVKRWMAEVPSISVGLGAGDPAQYYKAAMIAAHTHPAHVNQTFTGSGFAAGALAATGGEQTHINALVSPTGTPGEVVISTGVSSSQGMPARVSCEAAVRMMQDMGAHAAKFFPMGGEKSLPELYALATTAARHGMTLIEPTGGISLDNFGIILQTCLEAGVPRVMPHVYSSIIDPQTGNTRPEDIIQLMEIVKALV
>NZ_LT904891.1|WP_000188469.1|2408061_2409171_-|D-glucosaminate-6-phosphate-ammonia-lyase
MTPNIYQQLGLKKVINACGKMTILGVSSVAPEVMQATARAASAFVEIDALVEKTGELVSRYTGAEDSYITSCASAGIAIAVAAAITHGDRARVALMPDSTGMANEVVMLRGHNVDYGAPVTSAIRLGGGRIVEVGSSNLAARWQLESAINEKTAALLYVKSHHCVQKGMLSIDDFVQVAQANHLPLIVDAAAEEDLRGWVVSGADMVIYSGAKAFNAPTSGFITGKKTWIAACKAQHQGIARAMKIGKENMVGLVYALENYHQGQTTVTAAQLQPVAEAISAIHGLYADIEQDEAGRAIWRIRVRVNASELGLNAQDVEAQLRGGEIAIYARKYQLHQGVFSLDPRTVAEGEMALIVARLREIAEHAAD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_LT904891.1	2395967-2396000	2	0.941

1. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to position: 2395967-2396000, mismatch: 2, identity: 0.941

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
ccctgttattcccgatccggtggaccctgatcca	Protospacer
******.**************.************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453979-454010	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251927	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6517-6548	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238903	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235351-235382	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378779-378810	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82570	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224310	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221158	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284077	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219176	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55526	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376247	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134902	5	0.844
NZ_LT904891_1	1.3\|1534993\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1534993-1535024	32	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88841-88872	5	0.844
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	59609-59640	7	0.781
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN694480	Marine virus AFVG_250M133, complete genome	20886-20917	7	0.781
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN694671	Marine virus AFVG_250M145, complete genome	23163-23194	7	0.781
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN694753	Marine virus AFVG_250M144, complete genome	25459-25490	7	0.781
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN694231	Marine virus AFVG_250M143, complete genome	21163-21194	7	0.781
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN693981	Marine virus AFVG_250M146, complete genome	18773-18804	7	0.781
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	559039-559070	8	0.75
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	214654-214685	8	0.75
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	578776-578807	8	0.75
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	592092-592123	8	0.75
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN694115	Marine virus AFVG_250M901, complete genome	49467-49498	8	0.75
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_KR091915	Klebsiella pneumoniae strain KPC-DK05 plasmid pKPC-DK05, complete sequence	34745-34778	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_LN824136	Klebsiella pneumoniae genome assembly MS6671.v1, plasmid : _Plasmid_C_Kpneumoniae_MS6671	8497-8530	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP054370	Escherichia coli strain SCU-115 plasmid pSCU-115-2, complete sequence	11080-11113	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP015505	Klebsiella pneumoniae strain SKGH01 plasmid unnamed 5, complete sequence	19664-19697	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP026060	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed1, complete sequence	8699-8732	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP028999	Klebsiella pneumoniae strain AR_0079 plasmid unnamed2, complete sequence	6552-6585	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP027258	Escherichia coli strain EC11 plasmid unnamed3, complete sequence	13540-13573	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP023823	Escherichia coli strain 7/2 plasmid p7_2.3, complete sequence	8497-8530	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP026025	Klebsiella pneumoniae strain 11420 plasmid p11420-KPC, complete sequence	24864-24897	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP025915	Escherichia coli strain 203740 plasmid p203740_35, complete sequence	16768-16801	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_LS999564	Escherichia coli isolate EC-TO143 plasmid 5, complete sequence	8856-8889	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP006640	Escherichia coli PCN061 plasmid PCN061p4, complete sequence	14131-14164	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP029801	Salmonella enterica subsp. enterica serovar Anatum strain R16.0676 plasmid pR16.0676_34k, complete sequence	16058-16091	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP024853	Escherichia coli strain AR_0006 plasmid tig00000176, complete sequence	8500-8533	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_LT985287	Escherichia coli strain RPC3 plasmid RCS69_pI, complete sequence	39427-39460	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP015914	Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy2, complete sequence	117964-117997	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NC_020122	Citrobacter freundii strain CFSTE plasmid pN-Cit, complete sequence	10428-10461	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_CP018988	Escherichia coli strain Ecol_AZ146 plasmid pECAZ146_3, complete sequence	8856-8889	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_MK033500	Salmonella enterica subsp. enterica serovar Anatum strain R13.0957_pConj58k plasmid pConj58k, complete sequence	15665-15698	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_MK033501	Salmonella enterica subsp. enterica serovar Anatum strain R13.0957_pConj83k plasmid pConj83k, complete sequence	63964-63997	8	0.765
NZ_LT904891_2	2.1\|2395913\|34\|NZ_LT904891\|CRISPRCasFinder	2395913-2395946	34	NZ_MK033499	Escherichia coli strain C600_pConj125k plasmid pConj125k, complete sequence	116072-116105	8	0.765
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	NZ_CP046630	Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence	66427-66458	9	0.719
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	NZ_CP046920	Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence	70206-70237	9	0.719
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN694046	Marine virus AFVG_250M906, complete genome	22321-22352	9	0.719
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN693836	Marine virus AFVG_250M487, complete genome	10882-10913	9	0.719
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN693891	Marine virus AFVG_250M480, complete genome	21841-21872	9	0.719
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MK268344	Salmonella phage Munch, complete genome	122526-122557	9	0.719
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN694071	Marine virus AFVG_250M483, complete genome	16976-17007	9	0.719
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN694294	Marine virus AFVG_250M486, complete genome	8469-8500	9	0.719
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN693751	Marine virus AFVG_250M485, complete genome	13096-13127	9	0.719
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN694002	Marine virus AFVG_250M481, complete genome	18787-18818	9	0.719
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN694650	Marine virus AFVG_250M482, complete genome	20198-20229	9	0.719
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN693906	Marine virus AFVG_250M905, complete genome	17506-17537	9	0.719
NZ_LT904891_1	1.5\|1535115\|32\|NZ_LT904891\|CRISPRCasFinder,CRT,PILER-CR	1535115-1535146	32	MN694711	Marine virus AFVG_250M484, complete genome	24974-25005	9	0.719
NZ_LT904891_1	1.6\|1535176\|32\|NZ_LT904891\|CRISPRCasFinder,CRT	1535176-1535207	32	KR052482	Sinorhizobium phage phiN3, complete genome	197290-197321	9	0.719

1. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

2. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

3. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

4. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

5. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

6. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

7. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

8. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

9. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

10. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

11. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

12. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

13. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

14. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

15. spacer 1.3|1534993|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

16. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aattacaatggttaatgttggttatagtttag	Protospacer
* * * ** *.******************* .

17. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN694480 (Marine virus AFVG_250M133, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

18. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN694671 (Marine virus AFVG_250M145, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

19. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN694753 (Marine virus AFVG_250M144, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

20. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN694231 (Marine virus AFVG_250M143, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

21. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN693981 (Marine virus AFVG_250M146, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

22. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

23. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

24. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

25. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

26. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN694115 (Marine virus AFVG_250M901, complete genome) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
attaaaaaatattaatcttggttcttccgtaa	Protospacer
********* ****** ****** *  . * *

27. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_KR091915 (Klebsiella pneumoniae strain KPC-DK05 plasmid pKPC-DK05, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

28. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_LN824136 (Klebsiella pneumoniae genome assembly MS6671.v1, plasmid : _Plasmid_C_Kpneumoniae_MS6671) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

29. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP054370 (Escherichia coli strain SCU-115 plasmid pSCU-115-2, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

30. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP015505 (Klebsiella pneumoniae strain SKGH01 plasmid unnamed 5, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

31. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP026060 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

32. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP028999 (Klebsiella pneumoniae strain AR_0079 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

33. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP027258 (Escherichia coli strain EC11 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

34. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP023823 (Escherichia coli strain 7/2 plasmid p7_2.3, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

35. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP026025 (Klebsiella pneumoniae strain 11420 plasmid p11420-KPC, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

36. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP025915 (Escherichia coli strain 203740 plasmid p203740_35, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

37. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_LS999564 (Escherichia coli isolate EC-TO143 plasmid 5, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

38. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP006640 (Escherichia coli PCN061 plasmid PCN061p4, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

39. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP029801 (Salmonella enterica subsp. enterica serovar Anatum strain R16.0676 plasmid pR16.0676_34k, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

40. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP024853 (Escherichia coli strain AR_0006 plasmid tig00000176, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

41. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_LT985287 (Escherichia coli strain RPC3 plasmid RCS69_pI, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

42. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP015914 (Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy2, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

43. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NC_020122 (Citrobacter freundii strain CFSTE plasmid pN-Cit, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

44. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_CP018988 (Escherichia coli strain Ecol_AZ146 plasmid pECAZ146_3, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

45. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_MK033500 (Salmonella enterica subsp. enterica serovar Anatum strain R13.0957_pConj58k plasmid pConj58k, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

46. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_MK033501 (Salmonella enterica subsp. enterica serovar Anatum strain R13.0957_pConj83k plasmid pConj83k, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

47. spacer 2.1|2395913|34|NZ_LT904891|CRISPRCasFinder matches to NZ_MK033499 (Escherichia coli strain C600_pConj125k plasmid pConj125k, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

48. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046630 (Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

49. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046920 (Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

50. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN694046 (Marine virus AFVG_250M906, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

51. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN693836 (Marine virus AFVG_250M487, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

52. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN693891 (Marine virus AFVG_250M480, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

53. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
ggcagcattgattaatgatggttttagtttta	Protospacer
. .*. *  ******** ***** ********

54. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN694071 (Marine virus AFVG_250M483, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

55. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN694294 (Marine virus AFVG_250M486, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

56. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN693751 (Marine virus AFVG_250M485, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

57. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN694002 (Marine virus AFVG_250M481, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

58. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN694650 (Marine virus AFVG_250M482, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

59. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN693906 (Marine virus AFVG_250M905, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

60. spacer 1.5|1535115|32|NZ_LT904891|CRISPRCasFinder,CRT,PILER-CR matches to MN694711 (Marine virus AFVG_250M484, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

61. spacer 1.6|1535176|32|NZ_LT904891|CRISPRCasFinder,CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 9, identity: 0.719

taaaacaccggttgcgcaacctccgcggggat	CRISPR spacer
aacaacaccggttgcgaaacctacgcaaaaaa	Protospacer
 * ************* ***** ***....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 39520

Burkholderia_virus(48.48%)

integrase,plate,capsid,protease,transposase,tail

attL 5414:5430|attR 38428:38444

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094521484.1\|0_487_-\|tail	phage tail protein	F1BUP1	Erwinia_phage	7.1e-34	70.1
WP_000852584.1\|489_1068_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	6.4e-66	65.8
WP_001219103.1\|1060_2164_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	5.4e-106	54.3
WP_000859114.1\|2154_2502_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	8.6e-34	60.6
WP_000148263.1\|2558_3086_-\|plate	phage baseplate assembly protein V	Q6QIA1	Burkholderia_phage	1.5e-21	46.5
WP_000808000.1\|3082_4237_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	4.7e-84	47.1
WP_000478221.1\|4224_4437_-\|tail	tail protein X	Q6QIA3	Burkholderia_phage	2.4e-18	60.0
WP_000458383.1\|4436_5321_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	7.5e-50	47.0
WP_000135574.1\|5320_7786_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.2e-168	42.6
5414:5430	attL	NA	NA	NA	NA
WP_001148841.1\|7879_8017_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000084228.1\|7961_8297_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000110118.1\|8394_8676_-	hypothetical protein	NA	NA	NA	NA
WP_162828734.1\|8678_9203_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	4.7e-68	67.2
WP_000729859.1\|9199_10627_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	3.7e-216	77.4
WP_000666498.1\|10616_10868_-	hypothetical protein	NA	NA	NA	NA
WP_001101804.1\|10867_11332_-	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_000271668.1\|11331_11778_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_000537457.1\|11779_12118_-	DUF2190 family protein	NA	NA	NA	NA
WP_001286905.1\|12127_13081_-	hypothetical protein	A4JWK0	Burkholderia_virus	5.2e-65	44.5
WP_001273072.1\|13095_14211_-	hypothetical protein	A4JWJ9	Burkholderia_virus	7.9e-97	51.1
WP_000135517.1\|14425_14884_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	1.5e-30	44.8
WP_000117561.1\|14886_15708_-\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	5.3e-98	61.2
WP_000090679.1\|15688_17185_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	8.0e-169	59.6
WP_170825686.1\|17184_18726_-	hypothetical protein	A4JWJ4	Burkholderia_virus	9.0e-184	62.6
WP_000124060.1\|18776_19322_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
WP_000227700.1\|19321_19633_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000175097.1\|19632_19959_-	membrane protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
WP_000264664.1\|19955_20606_-	lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
WP_001104436.1\|20589_21318_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.7e-61	57.4
WP_000793143.1\|21320_21671_-	membrane protein	A4JWP3	Burkholderia_virus	4.5e-22	53.0
WP_100208317.1\|21914_22511_-	nucleoid-associated protein	NA	NA	NA	NA
WP_144079282.1\|22554_22938_+	hypothetical protein	A4JWN3	Burkholderia_virus	1.7e-27	58.9
WP_000567456.1\|22947_23112_+	hypothetical protein	NA	NA	NA	NA
WP_000990529.1\|23115_24885_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	2.8e-229	68.5
WP_000960673.1\|24895_26062_+	AAA family ATPase	A4JWN1	Burkholderia_virus	3.3e-122	59.7
WP_000843446.1\|26064_26334_+	hypothetical protein	NA	NA	NA	NA
WP_001140134.1\|26361_26892_+	host-nuclease inhibitor Gam family protein	L7P7T1	Pseudomonas_phage	3.4e-58	66.1
WP_000632575.1\|27180_27453_+	hypothetical protein	NA	NA	NA	NA
WP_000197790.1\|27462_27765_+	hypothetical protein	NA	NA	NA	NA
WP_001315283.1\|27761_28145_+	hypothetical protein	K7PJQ4	Enterobacteria_phage	2.3e-27	58.9
WP_153781233.1\|28152_28353_+	hypothetical protein	NA	NA	NA	NA
WP_000131941.1\|28349_29033_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	2.6e-34	37.3
WP_000631816.1\|29029_29260_+	hypothetical protein	NA	NA	NA	NA
WP_010989166.1\|29249_29465_+	hypothetical protein	NA	NA	NA	NA
WP_001315282.1\|29457_29907_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	9.4e-25	46.6
WP_001281695.1\|29878_30268_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.5e-31	54.2
WP_000769298.1\|30449_31394_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001219360.1\|31920_33450_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_000014056.1\|33460_34849_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_001118268.1\|35023_36058_-	AI-2E family transporter	NA	NA	NA	NA
WP_000500278.1\|36474_36837_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_001183821.1\|36823_37153_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_000549642.1\|37187_38009_-\|protease	serine protease	NA	NA	NA	NA
WP_001766314.1\|38277_38529_-	acid shock protein	NA	NA	NA	NA
38428:38444	attR	NA	NA	NA	NA
WP_000431187.1\|38922_39105_+	hypothetical protein	NA	NA	NA	NA
WP_000502119.1\|39061_39520_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

483161 : 605212

147

Salmonella_phage(51.58%)

integrase,head,terminase,plate,holin,protease,transposase,tail

attL 483941:484000|attR 531003:531715

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938184.1\|483161_483842_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	4.1e-80	70.1
483941:484000	attL	NA	NA	NA	NA
WP_000502118.1\|484049_484508_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_024138909.1\|485220_485412_-	DUF2767 family protein	A0A0M4R5C3	Salmonella_phage	5.8e-16	97.7
WP_001530989.1\|485520_485955_-	hypothetical protein	NA	NA	NA	NA
WP_046595041.1\|486310_486904_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	8.2e-93	87.4
WP_010835745.1\|486893_487718_-	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	9.8e-153	94.9
WP_046595042.1\|487714_489424_-\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	7.6e-91	65.6
WP_000729406.1\|489420_490047_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.3e-92	71.6
WP_001643834.1\|490030_491257_-\|plate	baseplate J/gp47 family protein	A0A0U2RJZ0	Escherichia_phage	3.7e-148	63.9
WP_001261467.1\|491253_491586_-	hypothetical protein	NA	NA	NA	NA
WP_000026342.1\|491582_492299_-	hypothetical protein	NA	NA	NA	NA
WP_010835743.1\|492295_493339_-	hypothetical protein	NA	NA	NA	NA
WP_000061271.1\|493338_493614_-	hypothetical protein	NA	NA	NA	NA
WP_000011138.1\|493610_494327_-	hypothetical protein	A0A0U2JGI7	Escherichia_phage	1.3e-28	36.5
WP_046595047.1\|494326_496381_-	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	2.9e-20	35.8
WP_046595050.1\|496504_497092_-	hypothetical protein	NA	NA	NA	NA
WP_001133547.1\|497091_497529_-	hypothetical protein	NA	NA	NA	NA
WP_001018953.1\|497532_498927_-	hypothetical protein	A0A0U2KD19	Escherichia_phage	9.3e-71	37.0
WP_010835739.1\|498932_499871_-	hypothetical protein	A0A0U2SH76	Escherichia_phage	1.9e-51	39.5
WP_046595124.1\|499854_500265_-	hypothetical protein	NA	NA	NA	NA
WP_046595054.1\|500282_500708_-	hypothetical protein	NA	NA	NA	NA
WP_001643824.1\|500720_501206_-	hypothetical protein	NA	NA	NA	NA
WP_001110972.1\|501270_502302_-	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	1.5e-73	45.5
WP_046595057.1\|502319_503192_-	hypothetical protein	NA	NA	NA	NA
WP_050194917.1\|503212_504787_-	NUDIX domain-containing protein	Q6UJ14	Burkholderia_virus	1.7e-20	48.6
WP_050194918.1\|504787_505663_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.5e-55	45.8
WP_050194919.1\|505634_507065_-	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	2.0e-92	37.9
WP_050194920.1\|507064_508336_-	hypothetical protein	A0A0U2JTW9	Escherichia_phage	5.1e-84	38.3
WP_050194921.1\|508325_509300_-\|terminase	terminase small subunit	C5IHM0	Burkholderia_virus	3.3e-30	37.9
WP_000877751.1\|509387_509945_+	YfbU family protein	NA	NA	NA	NA
WP_050194922.1\|509971_510520_-	DUF2514 family protein	NA	NA	NA	NA
WP_046597900.1\|510516_511143_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	4.2e-95	81.2
WP_085429533.1\|511145_511487_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.3e-45	80.4
WP_047590233.1\|511773_512100_-	hypothetical protein	NA	NA	NA	NA
WP_047590230.1\|512190_512769_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	8.4e-42	49.7
WP_050194923.1\|512765_513059_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.4e-31	63.2
WP_047602461.1\|513055_513652_-	DUF1367 family protein	H9C173	Pectobacterium_phage	2.5e-81	73.2
WP_000474096.1\|513720_513912_-	hypothetical protein	NA	NA	NA	NA
WP_001129735.1\|514095_514434_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.7e-50	86.6
WP_050194924.1\|514433_516470_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	8.8e-203	53.1
WP_001037052.1\|517219_517822_-	adenine methylase	G9L699	Escherichia_phage	1.7e-98	87.3
WP_050194925.1\|517814_518063_-	hypothetical protein	NA	NA	NA	NA
WP_050194926.1\|518066_518747_-	hypothetical protein	NA	NA	NA	NA
WP_055386682.1\|518784_520173_-	replicative DNA helicase	Q76H51	Enterobacteria_phage	8.3e-104	46.8
WP_050194928.1\|520169_521150_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	4.0e-44	79.6
WP_001195066.1\|521152_521377_-	hypothetical protein	H9C163	Pectobacterium_phage	1.0e-08	44.7
WP_000429172.1\|521399_521846_-	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-25	51.1
WP_000364674.1\|521910_522144_-	helix-turn-helix transcriptional regulator	A0A0U2S629	Escherichia_phage	2.9e-09	44.4
WP_024136813.1\|522252_522708_+	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	1.7e-34	51.7
WP_046595087.1\|523394_523718_+	hypothetical protein	NA	NA	NA	NA
WP_042827223.1\|523725_523971_+	hypothetical protein	A0A1B1W282	Salmonella_phage	4.5e-13	53.8
WP_042827221.1\|524000_526241_+	hypothetical protein	H9C157	Pectobacterium_phage	1.8e-108	34.8
WP_046595089.1\|526237_526792_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	4.9e-47	58.2
WP_000916251.1\|526794_526977_+	hypothetical protein	NA	NA	NA	NA
WP_000196401.1\|527189_527414_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_046595090.1\|527414_528434_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.0e-91	53.2
WP_000374046.1\|529021_529681_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000904446.1\|529767_530097_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|530093_530375_-	acylphosphatase	NA	NA	NA	NA
WP_000502118.1\|531111_531570_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000140485.1\|532701_533913_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
531003:531715	attR	NA	NA	NA	NA
WP_000561983.1\|533970_534288_+	heat shock protein HspQ	NA	NA	NA	NA
WP_001537782.1\|534332_534746_-	CoA-binding protein	NA	NA	NA	NA
WP_000847719.1\|534919_535582_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|535676_536135_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420526.1\|536170_538225_-	DNA helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
WP_001261222.1\|538348_538795_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950867.1\|538813_540967_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202371.1\|540953_541559_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288732.1\|541775_542285_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_010989142.1\|542639_543692_+	porin OmpA	NA	NA	NA	NA
WP_000877174.1\|543763_544216_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156455.1\|544401_546162_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|546230_546749_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001764860.1\|546848_547016_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|547269_547833_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433416.1\|547829_549470_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333152.1\|549474_550728_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053045.1\|550742_552650_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_001086472.1\|552662_554771_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	W6LLI2	Streptococcus_phage	5.1e-20	29.6
WP_000224084.1\|554869_555979_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_001220671.1\|555975_556518_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291724.1\|556683_557694_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_000193884.1\|557901_560514_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.1e-19	22.6
WP_000480169.1\|561530_562232_+	DUF1076 domain-containing protein	NA	NA	NA	NA
WP_000421106.1\|563153_563672_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	1.7e-46	62.8
WP_001681975.1\|563686_565198_-	hypothetical protein	S4TP62	Salmonella_phage	1.5e-111	59.4
WP_000049938.1\|565197_565878_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	6.9e-128	98.7
WP_001197092.1\|565874_567074_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	8.5e-214	97.5
WP_001270647.1\|567074_567428_-	hypothetical protein	A0A0M4R339	Salmonella_phage	3.2e-60	98.3
WP_001685627.1\|567668_568424_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.1e-105	85.3
WP_001144794.1\|568482_568911_-	hypothetical protein	NA	NA	NA	NA
WP_000050472.1\|568910_569642_-	hypothetical protein	NA	NA	NA	NA
WP_000826019.1\|569836_570172_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-20	52.2
WP_000042301.1\|570168_571200_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.2e-96	51.4
WP_000388505.1\|571202_571505_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	57.0
WP_000346974.1\|571508_572159_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.0e-56	60.6
WP_000990867.1\|572158_574111_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	1.8e-181	56.0
WP_000389047.1\|574288_574741_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.9e-57	76.6
WP_000257259.1\|574744_575185_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	3.5e-56	74.7
WP_001135544.1\|575196_576342_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-163	74.5
WP_000389379.1\|576345_576909_-	hypothetical protein	A0A0M4R331	Salmonella_phage	8.9e-81	75.3
WP_001142488.1\|576883_577273_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	98.4
WP_000008737.1\|577259_577814_-	hypothetical protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
WP_001125675.1\|577810_578218_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	7.1e-72	97.8
WP_001040702.1\|578183_578552_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
WP_000627464.1\|578593_579535_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
WP_000128060.1\|579546_580044_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
WP_000873182.1\|580048_581281_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.4e-227	99.0
WP_138010671.1\|581295_582033_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	7.8e-101	88.1
WP_000113511.1\|581917_583387_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.7e-280	99.2
WP_000204794.1\|583386_584790_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	6.5e-189	70.1
WP_001118118.1\|584755_585508_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	3.4e-11	56.5
WP_001070544.1\|585597_585825_-	hypothetical protein	NA	NA	NA	NA
WP_000495544.1\|585921_586299_-	hypothetical protein	Q6UAR9	Klebsiella_phage	4.9e-43	68.5
WP_001050879.1\|586341_586881_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.5e-08	38.4
WP_001075998.1\|586877_587492_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	3.2e-108	93.1
WP_000226307.1\|587491_587773_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
WP_001294876.1\|587759_588149_-\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	3.1e-40	70.2
WP_000798706.1\|588365_588815_+	lipoprotein	NA	NA	NA	NA
WP_001534733.1\|588950_589076_-	hypothetical protein	NA	NA	NA	NA
WP_001047634.1\|589474_590272_-	antitermination protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
WP_001617856.1\|590261_590408_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001096560.1\|590404_591016_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.5e-92	99.5
WP_000929790.1\|591224_591827_-	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_001804676.1\|591866_592106_-	hypothetical protein	H6WRY6	Salmonella_phage	5.9e-42	100.0
WP_001217670.1\|592161_592401_-	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
WP_000963896.1\|592585_593083_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_000509711.1\|593093_593273_-	hypothetical protein	NA	NA	NA	NA
WP_000208074.1\|594118_594691_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.3e-66	68.0
WP_000445792.1\|594694_595168_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
WP_000065105.1\|595167_595692_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
WP_000113623.1\|595688_596036_-	DUF977 family protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
WP_000800010.1\|596046_596796_-	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_001681803.1\|596798_597782_-	replication protein	H6WRX7	Salmonella_phage	2.1e-162	99.7
WP_001574095.1\|597866_598241_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000869365.1\|598206_598443_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.1e-37	98.7
WP_001009036.1\|598572_598977_+	transcriptional regulator	H6WRX4	Salmonella_phage	7.1e-72	99.3
WP_000186242.1\|599265_599466_+	cell division protein FtsZ	G8C7T2	Escherichia_phage	2.4e-12	48.4
WP_000995349.1\|599556_599853_+	host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	4.4e-47	96.9
WP_001764962.1\|599858_600644_+	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	9.7e-150	99.6
WP_000187053.1\|600640_601321_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.9e-130	98.7
WP_000034527.1\|601398_602463_+	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	6.3e-152	74.6
WP_010989138.1\|602459_603341_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4R347	Salmonella_phage	1.2e-153	93.0
WP_001754984.1\|603346_603586_+	DUF4060 family protein	S4TR31	Salmonella_phage	9.7e-37	96.2
WP_000065276.1\|603626_603875_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262313.1\|603919_605212_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	5.0e-252	99.8

DBSCAN-SWA_3

676150 : 683462

Ralstonia_phage(16.67%)

integrase,protease

attL 671206:671220|attR 682198:682212

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
671206:671220	attL	NA	NA	NA	NA
WP_001539594.1\|676150_676528_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
WP_001117984.1\|676689_676887_+	hypothetical protein	NA	NA	NA	NA
WP_000934058.1\|677098_679375_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-164	42.2
WP_000520789.1\|679405_679726_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|680049_680271_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125880.1\|680400_682347_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
682198:682212	attR	NA	NA	NA	NA
WP_001201759.1\|682343_683462_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8

DBSCAN-SWA_4

1296109 : 1382961

Salmonella_phage(40.0%)

tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000118732.1\|1296109_1297453_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001007105.1\|1297456_1297993_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000312802.1\|1298059_1298545_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_001171575.1\|1298781_1299207_-	hypothetical protein	NA	NA	NA	NA
WP_001147174.1\|1299178_1299580_-	BPSL0067 family protein	NA	NA	NA	NA
WP_000996818.1\|1301164_1301707_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_000175184.1\|1301770_1302061_-	hypothetical protein	NA	NA	NA	NA
WP_000449770.1\|1302146_1304810_-	type VI secretion system ATPase TssH	A0A2I7SAX5	Vibrio_phage	9.8e-77	34.8
WP_000806676.1\|1305177_1306080_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA
WP_000750542.1\|1306066_1306891_+	hypothetical protein	NA	NA	NA	NA
WP_000108006.1\|1306887_1307382_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000371495.1\|1307397_1309281_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000145233.1\|1309277_1310273_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001670675.1\|1311867_1312599_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	6.4e-39	39.9
WP_000917872.1\|1312662_1313130_+	ribonuclease HI	J9Q745	Salmonella_phage	4.7e-51	58.9
WP_000801233.1\|1313126_1313849_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001052766.1\|1313883_1314639_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_000644706.1\|1314710_1316078_+	murein transglycosylase D	A0A0A7NU10	Lactobacillus_phage	1.4e-10	33.0
WP_000207227.1\|1316133_1316904_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001230964.1\|1316981_1317782_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_001127546.1\|1317913_1319089_-	MFS transporter	NA	NA	NA	NA
WP_055386657.1\|1319193_1320108_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000154870.1\|1320128_1320932_-	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.7e-38	35.4
WP_001235094.1\|1326963_1329537_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.0e-128	35.6
WP_000992642.1\|1329666_1330398_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079130.1\|1330394_1331375_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197667.1\|1331506_1332244_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178449.1\|1332515_1332854_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_010989056.1\|1332957_1333005_+	hypothetical protein	NA	NA	NA	NA
WP_000200079.1\|1333104_1334265_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000210976.1\|1334225_1335134_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225191.1\|1335191_1336313_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_050186229.1\|1336322_1337393_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	9.0e-90	51.5
WP_001212373.1\|1337832_1338351_+	YfiR family protein	NA	NA	NA	NA
WP_001030993.1\|1338343_1339564_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	1.7e-07	37.0
WP_000065257.1\|1339720_1340068_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000469802.1\|1340108_1340876_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|1340920_1341469_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|1341487_1341736_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460052.1\|1342079_1343441_-	signal recognition particle protein	NA	NA	NA	NA
WP_001537507.1\|1343606_1344398_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_127172650.1\|1344417_1345704_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001682111.1\|1345824_1346382_+	hypothetical protein	NA	NA	NA	NA
WP_001518875.1\|1346463_1347054_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059155.1\|1347177_1348056_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880973.1\|1348141_1349803_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203445.1\|1349951_1350290_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001112990.1\|1350455_1350746_-	RnfH family protein	NA	NA	NA	NA
WP_000242603.1\|1350735_1351212_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|1351361_1351844_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_055386683.1\|1352463_1363029_+	BapA prefix-like domain-containing protein	NA	NA	NA	NA
WP_000533850.1\|1363092_1364502_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_000196138.1\|1364498_1366679_+	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_010989217.1\|1366686_1367850_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_000151542.1\|1368392_1369166_-	reverse transcriptase	NA	NA	NA	NA
WP_000380485.1\|1369134_1369308_-	hypothetical protein	NA	NA	NA	NA
WP_000972389.1\|1369569_1369788_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	1.9e-18	71.9
WP_001011760.1\|1369878_1370979_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
WP_000980381.1\|1370975_1371461_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
WP_001282796.1\|1371457_1374535_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
WP_000763311.1\|1374527_1374647_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001280897.1\|1374661_1374964_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
WP_001207656.1\|1375018_1375534_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_000046142.1\|1375543_1376716_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
WP_000905027.1\|1376858_1377425_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_001221113.1\|1378108_1379224_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
WP_001111827.1\|1379304_1382961_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.0e-44	28.6

DBSCAN-SWA_5

1700375 : 1743557

Bacillus_virus(25.0%)

integrase,bacteriocin,tRNA,protease,transposase

attL 1721871:1721884|attR 1749819:1749832

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001204111.1\|1700375_1700834_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000034386.1\|1701023_1702103_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000111274.1\|1702204_1703368_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_000218338.1\|1703389_1704436_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_000218564.1\|1704809_1705235_+	DNA-binding protein	NA	NA	NA	NA
WP_000124001.1\|1705260_1705839_+	ECF transporter S component	NA	NA	NA	NA
WP_000553254.1\|1705839_1706547_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_001775599.1\|1706534_1707212_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_000956919.1\|1707205_1707862_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.6e-09	28.6
WP_000502119.1\|1707966_1708425_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000098658.1\|1708613_1710605_-	transketolase	NA	NA	NA	NA
WP_000701830.1\|1710880_1711639_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_000105550.1\|1711739_1712660_-	agmatinase	NA	NA	NA	NA
WP_001278580.1\|1712887_1714864_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_000729109.1\|1714872_1715004_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_077905074.1\|1715137_1715302_+	hypothetical protein	NA	NA	NA	NA
WP_001803086.1\|1715298_1715598_-	hypothetical protein	NA	NA	NA	NA
WP_001062140.1\|1715653_1716808_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.5e-130	63.9
WP_001113171.1\|1717300_1718695_+	galactose/proton symporter	NA	NA	NA	NA
WP_000856775.1\|1718773_1719271_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286121.1\|1719366_1720074_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001800534.1\|1720150_1720882_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593242.1\|1720901_1721849_+	glutathione synthase	NA	NA	NA	NA
1721871:1721884	attL	NA	NA	NA	NA
WP_001053167.1\|1722064_1722628_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_001285491.1\|1722627_1723044_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_000098333.1\|1723090_1723777_-	global regulatory protein	NA	NA	NA	NA
WP_001055657.1\|1723906_1724887_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997790.1\|1724904_1725609_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_001094848.1\|1725627_1726194_+	YggT family protein	NA	NA	NA	NA
WP_001277205.1\|1726190_1726481_+	YggU family protein	NA	NA	NA	NA
WP_001174773.1\|1726488_1727082_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_001096530.1\|1727074_1728211_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000252198.1\|1728301_1729309_-	DUF1202 domain-containing protein	NA	NA	NA	NA
WP_000394189.1\|1729441_1730488_-	L-asparaginase 2	NA	NA	NA	NA
WP_000502119.1\|1730806_1731265_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000984827.1\|1731387_1732107_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001107559.1\|1732156_1732483_-	YggL family protein	NA	NA	NA	NA
WP_000786887.1\|1732482_1733202_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001148958.1\|1733356_1734409_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091706.1\|1734436_1734712_+	oxidative damage protection protein	NA	NA	NA	NA
WP_055386659.1\|1734824_1735910_+	membrane-bound lytic murein transglycosylase MltC	A0A0H3V0Q1	Geobacillus_virus	2.0e-12	39.8
WP_001049802.1\|1736126_1737383_+	nucleoside permease	NA	NA	NA	NA
WP_000234466.1\|1739993_1740701_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001681938.1\|1741042_1741327_+	DUF4102 domain-containing protein	A0A0P0IRB7	Acinetobacter_phage	3.2e-10	35.2
WP_014341481.1\|1741511_1741856_+\|integrase	integrase	NA	NA	NA	NA
WP_001141622.1\|1742976_1743294_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_000768134.1\|1743290_1743557_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
1749819:1749832	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2683573 : 2775177

Salmonella_phage(66.0%)

lysis,head,plate,terminase,integrase,capsid,tRNA,portal,transposase,tail

attL 2673073:2673087|attR 2775977:2775991

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2673073:2673087	attL	NA	NA	NA	NA
WP_000186987.1\|2683573_2684674_-\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_000591414.1\|2685047_2686892_+	TonB-dependent vitamin B12 receptor BtuB	A0A0P0I887	Acinetobacter_phage	2.2e-11	30.0
WP_000201804.1\|2686836_2687688_+	glutamate racemase	NA	NA	NA	NA
WP_000149790.1\|2693601_2694630_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_000655746.1\|2694626_2695589_+	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA	NA	NA	NA
WP_000023068.1\|2695623_2696574_-	type I pantothenate kinase	A0A1B1ISL9	uncultured_Mediterranean_phage	7.9e-29	32.5
WP_001775645.1\|2696782_2696956_-	hypothetical protein	NA	NA	NA	NA
WP_000031748.1\|2697532_2698717_+	elongation factor Tu	A0A2K9L516	Tupanvirus	2.6e-13	26.5
WP_001275691.1\|2698946_2699330_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_001287521.1\|2699331_2699877_+	transcription termination/antitermination protein NusG	NA	NA	NA	NA
WP_001085926.1\|2700034_2700463_+	50S ribosomal protein L11	NA	NA	NA	NA
WP_001096676.1\|2700466_2701171_+	50S ribosomal protein L1	NA	NA	NA	NA
WP_001207203.1\|2701586_2702084_+	50S ribosomal protein L10	NA	NA	NA	NA
WP_000028882.1\|2702150_2702516_+	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_000263105.1\|2702833_2706862_+	DNA-directed RNA polymerase subunit beta	A0A0N9R0J7	Chrysochromulina_ericina_virus	9.4e-23	29.0
WP_000653965.1\|2706938_2711162_+	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	5.0e-67	27.1
WP_001576436.1\|2711203_2711527_+	membrane protein	NA	NA	NA	NA
WP_031624270.1\|2711532_2711877_-	hypothetical protein	NA	NA	NA	NA
WP_000359982.1\|2712330_2712546_+	hypothetical protein	NA	NA	NA	NA
WP_000643282.1\|2712626_2713760_-	2-iminoacetate synthase ThiH	NA	NA	NA	NA
WP_000944065.1\|2713756_2714527_-	thiazole synthase	NA	NA	NA	NA
WP_001166848.1\|2714528_2714729_-	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_000999774.1\|2714709_2715468_-	HesA/MoeB/ThiF family protein	A0A1V0SAV8	Catovirus	7.0e-12	28.5
WP_000284626.1\|2715460_2716096_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_000108425.1\|2716095_2717991_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_000934311.1\|2718354_2718843_-	sigma D regulator	NA	NA	NA	NA
WP_000373954.1\|2718935_2719709_+	NAD(+) diphosphatase	NA	NA	NA	NA
WP_000137619.1\|2719749_2720814_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_000362359.1\|2720823_2721495_+	deoxyribonuclease V	A0A1V0SJW5	Klosneuvirus	2.1e-20	28.7
WP_000940092.1\|2721536_2722127_+	YjaG family protein	NA	NA	NA	NA
WP_001044509.1\|2722313_2722586_+	DNA-binding protein HU-alpha	A7KV42	Bacillus_phage	5.5e-20	57.8
WP_001083923.1\|2722597_2723290_+	DUF1481 domain-containing protein	NA	NA	NA	NA
WP_000828129.1\|2723331_2723787_-	zinc resistance sensor/chaperone ZraP	NA	NA	NA	NA
WP_001772857.1\|2724040_2725438_+	two-component system sensor histidine kinase ZraS	NA	NA	NA	NA
WP_000617932.1\|2725443_2726769_+	sigma-54-dependent response regulator transcription factor ZraR	NA	NA	NA	NA
WP_000866776.1\|2726765_2728055_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_001187501.1\|2728070_2729660_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.4e-68	47.4
WP_001541181.1\|2735721_2736570_-	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA
WP_000840996.1\|2736676_2737015_+	macrodomain Ori organization protein MaoP	NA	NA	NA	NA
WP_000502114.1\|2737122_2737581_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_000972391.1\|2739162_2739381_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_001011760.1\|2739471_2740572_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
WP_000980381.1\|2740568_2741054_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
WP_001282796.1\|2741050_2744128_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
WP_000763311.1\|2744120_2744240_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001280897.1\|2744254_2744557_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
WP_001207656.1\|2744611_2745127_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_000046142.1\|2745136_2746309_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
WP_000905046.1\|2746451_2747018_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_001174915.1\|2748113_2748554_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	3.1e-52	68.0
WP_048667453.1\|2748556_2749963_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	5.2e-154	75.3
WP_001086816.1\|2749959_2750565_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
WP_000268271.1\|2750557_2751466_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.3e-142	89.7
WP_000177595.1\|2751452_2751812_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	6.1e-51	84.9
WP_000993754.1\|2751808_2752387_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
WP_000829146.1\|2752455_2752902_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
WP_055386680.1\|2752894_2753326_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	7.6e-72	93.7
WP_001080928.1\|2753421_2753850_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.2e-47	77.3
WP_000727853.1\|2753846_2754224_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.3e-16	40.0
WP_001069905.1\|2754225_2754738_-	lysozyme	E5G6N1	Salmonella_phage	3.1e-88	92.3
WP_000171568.1\|2754718_2754934_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_000868175.1\|2754937_2755141_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000673504.1\|2755140_2755605_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.4e-76	89.0
WP_000059191.1\|2755700_2756351_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_000742518.1\|2756354_2757413_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.4e-180	93.1
WP_000216244.1\|2757429_2758263_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.5e-121	90.6
WP_001098422.1\|2758405_2760172_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_000518064.1\|2760171_2761209_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.3e-173	89.5
WP_000185757.1\|2761243_2761984_-	restriction endonuclease	NA	NA	NA	NA
WP_001146827.1\|2761980_2762895_-	hypothetical protein	NA	NA	NA	NA
WP_001251692.1\|2763508_2764387_+	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	6.1e-52	49.4
WP_000822803.1\|2764495_2764795_+	hypothetical protein	NA	NA	NA	NA
WP_001580533.1\|2764862_2765051_-	hypothetical protein	E5G6M0	Salmonella_phage	7.9e-26	95.2
WP_000017503.1\|2765204_2767619_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_000104152.1\|2767615_2768473_-	DNA adenine methylase	E5G6L8	Salmonella_phage	3.5e-161	97.2
WP_000752613.1\|2768469_2768697_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
WP_001244218.1\|2768696_2768930_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	2.0e-31	94.8
WP_000996717.1\|2768997_2769339_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_000956176.1\|2769456_2769753_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	4.9e-22	90.4
WP_000460893.1\|2769760_2770270_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_001247706.1\|2770302_2770524_-	hypothetical protein	NA	NA	NA	NA
WP_001047327.1\|2770649_2771219_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	2.5e-38	43.4
WP_000900883.1\|2771234_2771426_+	hypothetical protein	A0A0R6PIH8	Moraxella_phage	6.8e-09	65.9
WP_000290950.1\|2771614_2772667_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
WP_001311244.1\|2773292_2773391_+	ilv operon leader peptide	NA	NA	NA	NA
WP_001012560.1\|2773530_2775177_+	acetolactate synthase 2 catalytic subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	9.0e-65	31.5
2775977:2775991	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3042690 : 3136363

105

Salmonella_phage(81.63%)

lysis,integrase,head,plate,terminase,capsid,portal,tail

attL 3043863:3043879|attR 3141593:3141609

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050186166.1\|3042690_3043842_+\|integrase	site-specific integrase	B5WZU7	Pseudomonas_phage	3.1e-48	44.4
3043863:3043879	attL	NA	NA	NA	NA
WP_000455463.1\|3043938_3044406_+	hypothetical protein	NA	NA	NA	NA
WP_000994659.1\|3044617_3045493_+	hypothetical protein	NA	NA	NA	NA
WP_001149494.1\|3045680_3046043_+	hypothetical protein	NA	NA	NA	NA
WP_000214158.1\|3045999_3046914_+	hypothetical protein	NA	NA	NA	NA
WP_001768408.1\|3046932_3047673_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA
WP_000013624.1\|3047651_3048338_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_000253629.1\|3048373_3048874_+	integrating conjugative element protein	NA	NA	NA	NA
WP_000626967.1\|3048883_3049453_+	restriction endonuclease	NA	NA	NA	NA
WP_000071290.1\|3049472_3051563_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_010989289.1\|3051559_3052318_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_000252871.1\|3052554_3052809_+	hypothetical protein	NA	NA	NA	NA
WP_001251281.1\|3052808_3053048_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA
WP_000949576.1\|3053077_3053440_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_000848326.1\|3053449_3053824_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
WP_000086082.1\|3053820_3054474_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA
WP_001240640.1\|3054473_3055373_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
WP_001165842.1\|3055362_3056841_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
WP_000244536.1\|3056827_3057277_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
WP_000054770.1\|3060267_3060654_+	hypothetical protein	NA	NA	NA	NA
WP_000821941.1\|3060808_3061201_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA
WP_000838927.1\|3061197_3062166_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
WP_010989292.1\|3062180_3063611_+	integrating conjugative element protein	NA	NA	NA	NA
WP_000213770.1\|3063943_3065449_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_000993574.1\|3065484_3065874_-	hypothetical protein	NA	NA	NA	NA
WP_000623988.1\|3066097_3066340_-	hypothetical protein	NA	NA	NA	NA
WP_001283066.1\|3066744_3067992_+	phosphoadenosine phosphosulfate reductase	A0A068F1U8	Mycobacterium_phage	6.0e-61	33.1
WP_000502502.1\|3067976_3068618_+	ParB N-terminal domain-containing protein	A0A0F7L444	uncultured_marine_virus	1.1e-55	53.7
WP_010989295.1\|3068828_3069371_-	DUF1062 domain-containing protein	NA	NA	NA	NA
WP_000907593.1\|3070636_3071557_+\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_001020123.1\|3072280_3072583_+	hypothetical protein	NA	NA	NA	NA
WP_001103837.1\|3072678_3073059_+	hypothetical protein	NA	NA	NA	NA
WP_000018145.1\|3073429_3073639_+	hypothetical protein	NA	NA	NA	NA
WP_000979718.1\|3073656_3074109_+	hypothetical protein	NA	NA	NA	NA
WP_000968700.1\|3074105_3074402_+	hypothetical protein	NA	NA	NA	NA
WP_000115421.1\|3074479_3074938_+	hypothetical protein	NA	NA	NA	NA
WP_001097965.1\|3075026_3076976_+	DUF1738 domain-containing protein	A0A2K9V411	Faecalibacterium_phage	5.9e-31	38.3
WP_000881183.1\|3077047_3077956_+	hypothetical protein	NA	NA	NA	NA
WP_000022217.1\|3078029_3078929_+	hypothetical protein	NA	NA	NA	NA
WP_000911568.1\|3079003_3079330_+	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_001222413.1\|3079429_3079699_-	hypothetical protein	NA	NA	NA	NA
WP_000457555.1\|3079830_3081105_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.5e-152	62.0
WP_001039750.1\|3081324_3081702_+	hypothetical protein	NA	NA	NA	NA
WP_001775272.1\|3081788_3082007_-	ogr/Delta-like zinc finger family protein	E5G6Q4	Salmonella_phage	4.9e-27	75.0
WP_001011750.1\|3082074_3083175_-	phage late control D family protein	E5G6Q3	Salmonella_phage	7.9e-190	92.1
WP_000980405.1\|3083171_3083657_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-71	93.2
WP_161976233.1\|3083656_3086203_-\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	1.2e-113	42.7
WP_000763315.1\|3086429_3086549_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
WP_001280965.1\|3086563_3086866_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
WP_001207653.1\|3086920_3087436_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
WP_000046101.1\|3087445_3088618_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.8e-223	99.5
WP_000388790.1\|3088720_3088939_-	Hin recombinase	A0A1S6L009	Salmonella_phage	1.4e-29	90.3
WP_000161708.1\|3089152_3089875_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_000006337.1\|3090072_3090480_-\|tail	tail fiber assembly protein	A0A1B0V844	Salmonella_phage	4.1e-59	84.2
WP_000104806.1\|3090486_3092106_-\|tail	phage tail protein	E5G6P0	Salmonella_phage	2.7e-154	90.9
WP_001086816.1\|3092102_3092708_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
WP_000268327.1\|3092700_3093609_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.2e-155	97.0
WP_000177408.1\|3093595_3093955_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	6.8e-58	96.6
WP_000993749.1\|3093951_3094530_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.9e-108	99.5
WP_000343944.1\|3094598_3095045_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-66	90.4
WP_001039961.1\|3095037_3095469_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.1e-75	99.3
WP_024131238.1\|3095564_3095993_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	3.3e-67	97.9
WP_000731034.1\|3095989_3096367_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.5e-60	99.2
WP_001097942.1\|3096371_3096881_-	lysozyme	A0A1S6KZY9	Salmonella_phage	1.3e-91	97.0
WP_000171566.1\|3096861_3097077_-	hypothetical protein	E5G6N0	Salmonella_phage	3.8e-32	98.6
WP_000868184.1\|3097080_3097284_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000673540.1\|3097283_3097748_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.4e-84	98.1
WP_000059175.1\|3097841_3098492_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	2.4e-114	99.5
WP_000730751.1\|3098495_3099560_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.3e-194	98.3
WP_000216272.1\|3099576_3100410_-\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	6.1e-126	87.4
WP_001098453.1\|3100552_3102319_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.4
WP_001681813.1\|3102318_3103362_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.1e-176	86.6
WP_000080839.1\|3103410_3104106_-	hypothetical protein	NA	NA	NA	NA
WP_000789323.1\|3104125_3105190_-	hypothetical protein	NA	NA	NA	NA
WP_000829584.1\|3105186_3106251_-	hypothetical protein	NA	NA	NA	NA
WP_000835188.1\|3106260_3106479_-	hypothetical protein	NA	NA	NA	NA
WP_001217561.1\|3106574_3106808_-	DinI family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
WP_001154438.1\|3106819_3107008_-	hypothetical protein	A0A1S6L006	Salmonella_phage	7.9e-26	96.8
WP_000301193.1\|3107175_3109584_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.1
WP_000104130.1\|3109574_3110435_-	DNA adenine methylase	E5G6L8	Salmonella_phage	3.4e-132	81.8
WP_001090717.1\|3110431_3111016_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	1.1e-76	73.7
WP_000785510.1\|3111012_3111240_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
WP_001244240.1\|3111239_3111473_-	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	9.8e-26	84.4
WP_000963479.1\|3111540_3111882_-	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
WP_000956167.1\|3111845_3112046_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.6e-32	97.0
WP_000460852.1\|3112053_3112563_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.3e-83	94.1
WP_000102106.1\|3112595_3112838_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
WP_000052560.1\|3112954_3113587_+	helix-turn-helix domain-containing protein	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
WP_000027757.1\|3113590_3114616_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.7e-200	98.2
WP_001681810.1\|3115722_3115980_+	YjhX family toxin	NA	NA	NA	NA
WP_001681808.1\|3115990_3116881_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_000354257.1\|3116880_3117627_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000052242.1\|3117928_3119899_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA
WP_000431675.1\|3119918_3121223_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA
WP_000467404.1\|3121245_3121941_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA
WP_001023498.1\|3121966_3122761_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA
WP_000720235.1\|3122770_3123838_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA
WP_000632616.1\|3123882_3125619_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA
WP_010989299.1\|3125618_3128114_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA
WP_000127915.1\|3128137_3129184_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	A0A2K9L0I7	Tupanvirus	1.4e-74	45.0
WP_000466893.1\|3129186_3130464_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	M1HYW7	Paramecium_bursaria_Chlorella_virus	1.3e-21	26.7
WP_001210944.1\|3130708_3131248_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA
WP_001120833.1\|3132101_3133613_+	ATP-dependent helicase	A0A126DN25	Acinetobacter_phage	2.0e-42	29.0
WP_000488995.1\|3133596_3135186_+	TraI domain-containing protein	NA	NA	NA	NA
WP_000449622.1\|3135349_3136363_+\|integrase	site-specific integrase	NA	NA	NA	NA
3141593:3141609	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3288546 : 3301207

Enterobacteria_phage(55.56%)

integrase

attL 3279081:3279094|attR 3292212:3292225

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3279081:3279094	attL	NA	NA	NA	NA
WP_000152561.1\|3288546_3290037_-	alcohol dehydrogenase catalytic domain-containing protein	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	4.0e-11	36.1
WP_000772672.1\|3290507_3291773_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.6e-74	41.0
WP_000573583.1\|3291835_3292912_-	serine/threonine protein kinase	A0A2H4UU60	Bodo_saltans_virus	7.8e-17	28.2
3292212:3292225	attR	NA	NA	NA	NA
WP_000700163.1\|3292908_3293967_-	serine/threonine protein kinase	G9BWE0	Planktothrix_phage	4.9e-56	44.7
WP_000493739.1\|3293956_3295120_-	hypothetical protein	NA	NA	NA	NA
WP_000214423.1\|3295395_3295962_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.8e-60	64.9
WP_000468230.1\|3295977_3296217_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	3.7e-20	60.5
WP_001779443.1\|3296220_3296964_-	hypothetical protein	NA	NA	NA	NA
WP_000556588.1\|3297503_3297770_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	5.8e-30	70.5
WP_015701354.1\|3297766_3298318_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.1e-30	70.4
WP_001216603.1\|3298314_3298542_+	hypothetical protein	NA	NA	NA	NA
WP_000795388.1\|3298538_3298859_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000783716.1\|3298873_3301207_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	86.5

DBSCAN-SWA_9

3954658 : 3960689

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106417237.1\|3954658_3954805_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.1e-14	73.9
WP_106417236.1\|3954820_3954964_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	9.0e-14	87.8
WP_000400611.1\|3955953_3957876_-	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	5.6e-300	77.2
WP_000703599.1\|3957892_3958147_-	glycosyltransferase	A8CG95	Salmonella_phage	3.1e-25	79.5
WP_001682026.1\|3958115_3958505_-	GtrA family protein	A0A192Y6N5	Salmonella_phage	6.9e-56	91.5
WP_000377769.1\|3959747_3960689_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	2.4e-147	88.2

DBSCAN-SWA_10

4195198 : 4204369

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|4195198_4196146_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
WP_000824854.1\|4196129_4196861_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|4196841_4196949_-	protein YohO	NA	NA	NA	NA
WP_001240415.1\|4197008_4197740_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272853.1\|4197962_4199648_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.1e-278	91.1
WP_050186121.1\|4199644_4200364_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|4200410_4200878_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197951.1\|4200934_4201465_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|4201636_4202095_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195338.1\|4202335_4204369_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9

DBSCAN-SWA_11

4280261 : 4290768

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001111852.1\|4280261_4281665_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-21	26.5
WP_000981469.1\|4281842_4282736_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1\|4283112_4284198_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023656.1\|4284197_4285097_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.9e-31	36.3
WP_000857536.1\|4285144_4286023_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.3e-107	64.8
WP_000973711.1\|4286023_4286575_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
WP_000018220.1\|4286580_4287555_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648783.1\|4287570_4288344_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565909.1\|4288348_4289428_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.1
WP_000126347.1\|4289454_4290768_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_12

4374510 : 4381744

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|4374510_4374930_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457648.1\|4374932_4376201_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.3e-224	91.2
WP_000208507.1\|4376646_4376859_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.5e-20	70.0
WP_024131163.1\|4376869_4377058_+	hypothetical protein	NA	NA	NA	NA
WP_001080666.1\|4377318_4378503_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.4e-107	56.4
WP_000107435.1\|4379153_4379465_+	hypothetical protein	NA	NA	NA	NA
WP_000377043.1\|4379544_4380240_+	phosphohydrolase	S4W232	Pandoravirus	2.1e-07	27.5
WP_001157299.1\|4380313_4381744_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_13

4585639 : 4590051

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000281950.1\|4585639_4586053_+	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6
WP_001766395.1\|4586069_4586798_+	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.9e-63	53.3
WP_000158843.1\|4586989_4587532_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001277616.1\|4587679_4588057_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_001529135.1\|4588129_4588939_-	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	2.1e-62	50.0
WP_001036668.1\|4589435_4589600_+	hypothetical protein	NA	NA	NA	NA
WP_000497451.1\|4589811_4590051_-	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LT904892

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

81295 : 97634

Escherichia_phage(40.0%)

transposase,integrase

attL 81156:81215|attR 93488:93626

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
81156:81215	attL	NA	NA	NA	NA
WP_000845054.1\|81295_82309_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_000454193.1\|82511_82862_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000427614.1\|83701_84706_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000412211.1\|86032_86692_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_000656305.1\|86892_87270_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000427623.1\|87580_88585_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_001138064.1\|88663_91630_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_001067855.1\|91852_92557_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001206356.1\|93552_94344_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
93488:93626	attR	NA	NA	NA	NA
WP_000679427.1\|94507_94855_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|94848_95688_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|96092_97634_+\|transposase	IS91 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

100813 : 136497

Escherichia_phage(78.95%)

integrase,transposase

attL 100748:100807|attR 114130:114952

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
100748:100807	attL	NA	NA	NA	NA
WP_001067855.1\|100813_101518_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000015696.1\|101875_102154_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_071533317.1\|102179_102365_+	hypothetical protein	NA	NA	NA	NA
WP_002310911.1\|102361_102700_-	hypothetical protein	NA	NA	NA	NA
WP_001297013.1\|102603_103794_-	tetracycline efflux MFS transporter Tet(C)	NA	NA	NA	NA
WP_001038045.1\|103886_104546_+	tetracycline resistance transcriptional repressor TetR(C)	NA	NA	NA	NA
WP_001067855.1\|105378_106083_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_002210516.1\|106794_107415_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_002210515.1\|107407_108673_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	2.7e-234	100.0
WP_002210514.1\|108684_109587_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	5.3e-160	100.0
WP_002210513.1\|109847_110609_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_001620095.1\|110629_111490_-	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_001620096.1\|111787_112048_+	hypothetical protein	A0A077SK33	Escherichia_phage	1.9e-41	100.0
WP_001620097.1\|112134_113223_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_001067855.1\|114195_114900_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|115510_116215_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
114130:114952	attR	NA	NA	NA	NA
WP_055386686.1\|116226_117327_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	2.2e-27	29.1
WP_001039466.1\|117421_118606_-	tetracycline efflux MFS transporter Tet(D)	NA	NA	NA	NA
WP_000113282.1\|118701_119358_+	tetracycline resistance transcriptional repressor TetR(D)	NA	NA	NA	NA
WP_001067855.1\|119369_120074_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000057569.1\|121016_121358_+	hypothetical protein	NA	NA	NA	NA
WP_004248792.1\|121372_122164_-	SprT-like domain-containing protein	NA	NA	NA	NA
WP_000480968.1\|122344_123181_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|123180_123984_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000904895.1\|124049_124664_-	recombinase family protein	E5FFF9	Burkholderia_phage	4.3e-36	48.1
WP_001067855.1\|124838_125543_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018326.1\|125661_126477_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	4.3e-161	98.5
WP_001067855.1\|126659_127364_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_002210551.1\|128411_128540_+	hypothetical protein	NA	NA	NA	NA
WP_000792636.1\|128713_129247_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.8e-21	33.9
WP_000128596.1\|129246_130242_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_000101710.1\|130283_131444_-	type IV secretion system protein VirB10	NA	NA	NA	NA
WP_000735066.1\|131443_132328_-	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_001067855.1\|132498_133203_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001044210.1\|133208_133349_+	hypothetical protein	NA	NA	NA	NA
WP_001366550.1\|133834_134572_+	recombinase family protein	NA	NA	NA	NA
WP_000743213.1\|134568_134793_+	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|135003_136497_+\|transposase	IS91 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT904891

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LT904892

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection