CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT904886	Salmonella enterica subsp. enterica serovar Typhi strain SGB82 chromosome 1	1 crisprs	DEDDh,cas3,c2c9_V-U4,DinG,WYL,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	5	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT904886_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT904886_1

4160269-4160689

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_LT904886_1

>merge|NZ_LT904886|1|4160269-4160689|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACGGACAGCAACCCGTGTCGGATATCAGACAGATCGGTTTATCCCCGCTGGCGCGGGGAACACACGCGAATCGCCAATCGCCGCCGCGTGAATTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCACGATGTATGCCGACCGTGATTTTTACCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGATACGCCTTTACGTCGCCCTCTTTGGCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACATTAAAAAAGATTAATGTTGGTTATAGTTTTACGGTTTATCCCCGCTGGTGCGGGGAACACTAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_LT904886|1|1|4160269-4160663|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>NZ_LT904886|1|1|4160269-4160663|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>NZ_LT904886|1|1|4160271-4160689|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACACG	GACAGCAACCCGTGTCGGATATCAGACAGATCG
GTTTATCCCCGCTGGCGCGGGGAACACA	CGCGAATCGCCAATCGCCGCCGCGTGAATTGCG
GTTTATCCCCGCTGGCGCGGGGAACACC	CACGATGTATGCCGACCGTGATTTTTACCGCCG
GTTTATCCCCGCTGGCGCGGGGAACACA	GATACGCCTTTACGTCGCCCTCTTTGGCGCGCG
GTTTATCCCCGCTGGCGCGGGGAACACA	TTAAAAAAGATTAATGTTGGTTATAGTTTTACG
GTTTATCCCCGCTGGTGCGGGGAACACT	AAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT904886.1\|WP_000118669.1\|4161069_4161987_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_LT904886.1\|WP_000666425.1\|4162690_4163416_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_LT904886.1\|WP_000490486.1\|4159207_4160254_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_LT904886.1\|WP_001681565.1\|4163425_4164484_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_LT904886.1\|WP_000741649.1\|4154402_4155113_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_LT904886.1\|WP_001092273.1\|4156599_4158039_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_LT904886.1\|WP_000372384.1\|4158048_4158957_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_LT904886.1\|WP_000062282.1\|4160773_4161067_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_LT904886.1\|WP_001537530.1\|4155633_4155957_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_LT904886.1\|WP_000134253.1\|4152877_4153927_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_LT904886.1\|WP_001221538.1\|4152135_4152897_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_LT904886.1\|WP_000366321.1\|4165125_4166661_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_LT904886.1\|WP_001291998.1\|4171950_4173663_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_LT904886.1\|WP_000281411.1\|4161986_4162691_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NZ_LT904886.1\|WP_000517480.1\|4155131_4155443_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_LT904886.1\|WP_001219244.1\|4153923_4154403_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_LT904886.1\|WP_000935107.1\|4164506_4165109_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_LT904886.1\|WP_001145541.1\|4170099_4171053_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_LT904886.1\|WP_001173663.1\|4156007_4156613_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_LT904886.1\|WP_000080392.1\|4171140_4171875_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
NZ_LT904886.1\|WP_000118669.1\|4161069_4161987_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.77553e-155
NZ_LT904886.1\|WP_000666425.1\|4162690_4163416_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27863e-48
NZ_LT904886.1\|WP_000490486.1\|4159207_4160254_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_LT904886.1\|WP_001681565.1\|4163425_4164484_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.49739e-119
NZ_LT904886.1\|WP_000741649.1\|4154402_4155113_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NZ_LT904886.1\|WP_001092273.1\|4156599_4158039_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_LT904886.1\|WP_000372384.1\|4158048_4158957_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_LT904886.1\|WP_000062282.1\|4160773_4161067_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
NZ_LT904886.1\|WP_001537530.1\|4155633_4155957_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_LT904886.1\|WP_000134253.1\|4152877_4153927_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_LT904886.1\|WP_001221538.1\|4152135_4152897_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_LT904886.1\|WP_000366321.1\|4165125_4166661_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_LT904886.1\|WP_001291998.1\|4171950_4173663_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_LT904886.1\|WP_000281411.1\|4161986_4162691_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.23447e-89
NZ_LT904886.1\|WP_000517480.1\|4155131_4155443_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_LT904886.1\|WP_001219244.1\|4153923_4154403_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_LT904886.1\|WP_000935107.1\|4164506_4165109_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
NZ_LT904886.1\|WP_001145541.1\|4170099_4171053_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_LT904886.1\|WP_001173663.1\|4156007_4156613_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_LT904886.1\|WP_000080392.1\|4171140_4171875_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.17372e-138

>NZ_LT904886.1|WP_000490486.1|4159207_4160254_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_LT904886.1|WP_000372384.1|4158048_4158957_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_LT904886.1|WP_001092273.1|4156599_4158039_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_LT904886.1|WP_001173663.1|4156007_4156613_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_LT904886.1|WP_001537530.1|4155633_4155957_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_LT904886.1|WP_000517480.1|4155131_4155443_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_LT904886.1|WP_000741649.1|4154402_4155113_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_LT904886.1|WP_001219244.1|4153923_4154403_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_LT904886.1|WP_000134253.1|4152877_4153927_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_LT904886.1|WP_001221538.1|4152135_4152897_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_LT904886.1|WP_000062282.1|4160773_4161067_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NZ_LT904886.1|WP_000118669.1|4161069_4161987_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDSGHRST
>NZ_LT904886.1|WP_000281411.1|4161986_4162691_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NZ_LT904886.1|WP_000666425.1|4162690_4163416_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_LT904886.1|WP_001681565.1|4163425_4164484_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_LT904886.1|WP_000935107.1|4164506_4165109_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>NZ_LT904886.1|WP_000366321.1|4165125_4166661_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_LT904886.1|WP_001145541.1|4170099_4171053_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_LT904886.1|WP_000080392.1|4171140_4171875_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWAQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_LT904886.1|WP_001291998.1|4171950_4173663_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKYPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDIQASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453979-454010	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251927	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6517-6548	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238903	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235351-235382	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378779-378810	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82570	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224310	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221158	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284077	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219176	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55526	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376247	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134902	5	0.844
NZ_LT904886_1	1.3\|4160420\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160420-4160451	32	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88841-88872	5	0.844
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453978-454010	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251928	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6516-6548	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238904	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235350-235382	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378778-378810	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82571	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224311	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221159	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284078	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219177	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55527	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376248	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134903	6	0.818
NZ_LT904886_1	1.9\|4160421\|33\|NZ_LT904886\|PILER-CR	4160421-4160453	33	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88840-88872	6	0.818
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	59609-59640	7	0.781
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN694480	Marine virus AFVG_250M133, complete genome	20886-20917	7	0.781
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN694671	Marine virus AFVG_250M145, complete genome	23163-23194	7	0.781
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN694753	Marine virus AFVG_250M144, complete genome	25459-25490	7	0.781
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN694231	Marine virus AFVG_250M143, complete genome	21163-21194	7	0.781
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN693981	Marine virus AFVG_250M146, complete genome	18773-18804	7	0.781
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	559039-559070	8	0.75
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	214654-214685	8	0.75
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	578776-578807	8	0.75
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	592092-592123	8	0.75
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN694115	Marine virus AFVG_250M901, complete genome	49467-49498	8	0.75
NZ_LT904886_1	1.11\|4160543\|33\|NZ_LT904886\|PILER-CR	4160543-4160575	33	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	559038-559070	8	0.758
NZ_LT904886_1	1.11\|4160543\|33\|NZ_LT904886\|PILER-CR	4160543-4160575	33	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	214653-214685	8	0.758
NZ_LT904886_1	1.11\|4160543\|33\|NZ_LT904886\|PILER-CR	4160543-4160575	33	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	578775-578807	8	0.758
NZ_LT904886_1	1.11\|4160543\|33\|NZ_LT904886\|PILER-CR	4160543-4160575	33	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	592092-592124	8	0.758
NZ_LT904886_1	1.11\|4160543\|33\|NZ_LT904886\|PILER-CR	4160543-4160575	33	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	59609-59641	8	0.758
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	NZ_CP046630	Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence	66427-66458	9	0.719
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	NZ_CP046920	Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence	70206-70237	9	0.719
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN694046	Marine virus AFVG_250M906, complete genome	22321-22352	9	0.719
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN693836	Marine virus AFVG_250M487, complete genome	10882-10913	9	0.719
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN693891	Marine virus AFVG_250M480, complete genome	21841-21872	9	0.719
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MK268344	Salmonella phage Munch, complete genome	122526-122557	9	0.719
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN694071	Marine virus AFVG_250M483, complete genome	16976-17007	9	0.719
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN694294	Marine virus AFVG_250M486, complete genome	8469-8500	9	0.719
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN693751	Marine virus AFVG_250M485, complete genome	13096-13127	9	0.719
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN694002	Marine virus AFVG_250M481, complete genome	18787-18818	9	0.719
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN694650	Marine virus AFVG_250M482, complete genome	20198-20229	9	0.719
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN693906	Marine virus AFVG_250M905, complete genome	17506-17537	9	0.719
NZ_LT904886_1	1.5\|4160542\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160542-4160573	32	MN694711	Marine virus AFVG_250M484, complete genome	24974-25005	9	0.719
NZ_LT904886_1	1.6\|4160603\|32\|NZ_LT904886\|CRISPRCasFinder,CRT	4160603-4160634	32	KR052482	Sinorhizobium phage phiN3, complete genome	197290-197321	9	0.719

1. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

2. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

3. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

4. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

5. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

6. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

7. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

8. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

9. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

10. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

11. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

12. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

13. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

14. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

15. spacer 1.3|4160420|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

16. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

17. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

18. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

19. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

20. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

21. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

22. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

23. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

24. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

25. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

26. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

27. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

28. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

29. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

30. spacer 1.9|4160421|33|NZ_LT904886|PILER-CR matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

31. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aattacaatggttaatgttggttatagtttag	Protospacer
* * * ** *.******************* .

32. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN694480 (Marine virus AFVG_250M133, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

33. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN694671 (Marine virus AFVG_250M145, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

34. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN694753 (Marine virus AFVG_250M144, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

35. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN694231 (Marine virus AFVG_250M143, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

36. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN693981 (Marine virus AFVG_250M146, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

37. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

38. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

39. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

40. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

41. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN694115 (Marine virus AFVG_250M901, complete genome) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
attaaaaaatattaatcttggttcttccgtaa	Protospacer
********* ****** ****** *  . * *

42. spacer 1.11|4160543|33|NZ_LT904886|PILER-CR matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac---	CRISPR spacer
attaagaaagattaatgttgttta---atcaacgta	Protospacer
*****.************** ***    *. **

43. spacer 1.11|4160543|33|NZ_LT904886|PILER-CR matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac---	CRISPR spacer
attaagaaagattaatgttgttta---atcaacgta	Protospacer
*****.************** ***    *. **

44. spacer 1.11|4160543|33|NZ_LT904886|PILER-CR matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac---	CRISPR spacer
attaagaaagattaatgttgttta---atcaacgta	Protospacer
*****.************** ***    *. **

45. spacer 1.11|4160543|33|NZ_LT904886|PILER-CR matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac---	CRISPR spacer
attaagaaagattaatgttgttta---atcaacgta	Protospacer
*****.************** ***    *. **

46. spacer 1.11|4160543|33|NZ_LT904886|PILER-CR matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac	CRISPR spacer
aattacaatggttaatgttggttatagtttagg	Protospacer
* * * ** *.******************* .

47. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP046630 (Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

48. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to NZ_CP046920 (Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

49. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN694046 (Marine virus AFVG_250M906, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

50. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN693836 (Marine virus AFVG_250M487, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

51. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN693891 (Marine virus AFVG_250M480, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

52. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
ggcagcattgattaatgatggttttagtttta	Protospacer
. .*. *  ******** ***** ********

53. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN694071 (Marine virus AFVG_250M483, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

54. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN694294 (Marine virus AFVG_250M486, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

55. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN693751 (Marine virus AFVG_250M485, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

56. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN694002 (Marine virus AFVG_250M481, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

57. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN694650 (Marine virus AFVG_250M482, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

58. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN693906 (Marine virus AFVG_250M905, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

59. spacer 1.5|4160542|32|NZ_LT904886|CRISPRCasFinder,CRT matches to MN694711 (Marine virus AFVG_250M484, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

60. spacer 1.6|4160603|32|NZ_LT904886|CRISPRCasFinder,CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 9, identity: 0.719

taaaacaccggttgcgcaacctccgcggggat	CRISPR spacer
aacaacaccggttgcgaaacctacgcaaaaaa	Protospacer
 * ************* ***** ***....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

876273 : 968888

103

Salmonella_phage(81.63%)

tail,head,terminase,capsid,portal,plate,lysis,integrase

attL 877446:877462|attR 974118:974134

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000089603.1\|876273_877425_+\|integrase	site-specific integrase	B5WZU7	Pseudomonas_phage	6.3e-49	44.8
877446:877462	attL	NA	NA	NA	NA
WP_000455463.1\|877521_877989_+	hypothetical protein	NA	NA	NA	NA
WP_000994659.1\|878200_879076_+	hypothetical protein	NA	NA	NA	NA
WP_001149494.1\|879263_879626_+	hypothetical protein	NA	NA	NA	NA
WP_000214158.1\|879582_880497_+	hypothetical protein	NA	NA	NA	NA
WP_001768408.1\|880515_881256_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA
WP_000013624.1\|881234_881921_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_000253629.1\|881956_882457_+	integrating conjugative element protein	NA	NA	NA	NA
WP_000626967.1\|882466_883036_+	restriction endonuclease	NA	NA	NA	NA
WP_000071290.1\|883055_885146_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_010989289.1\|885142_885901_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_000252871.1\|886137_886392_+	hypothetical protein	NA	NA	NA	NA
WP_001251281.1\|886391_886631_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA
WP_000949576.1\|886660_887023_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_000848326.1\|887032_887407_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
WP_000086082.1\|887403_888057_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA
WP_001240640.1\|888056_888956_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
WP_001165842.1\|888945_890424_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
WP_000244536.1\|890410_890860_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
WP_000054770.1\|893850_894237_+	hypothetical protein	NA	NA	NA	NA
WP_000821941.1\|894391_894784_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA
WP_000838927.1\|894780_895749_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
WP_010989292.1\|895763_897194_+	integrating conjugative element protein	NA	NA	NA	NA
WP_000213770.1\|897526_899032_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_001283066.1\|899270_900518_+	phosphoadenosine phosphosulfate reductase	A0A068F1U8	Mycobacterium_phage	6.0e-61	33.1
WP_000502502.1\|900502_901144_+	ParB N-terminal domain-containing protein	A0A0F7L444	uncultured_marine_virus	1.1e-55	53.7
WP_010989295.1\|901354_901897_-	DUF1062 domain-containing protein	NA	NA	NA	NA
WP_000907593.1\|903162_904083_+\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_001020123.1\|904806_905109_+	hypothetical protein	NA	NA	NA	NA
WP_001103837.1\|905204_905585_+	hypothetical protein	NA	NA	NA	NA
WP_000018145.1\|905955_906165_+	hypothetical protein	NA	NA	NA	NA
WP_000979718.1\|906182_906635_+	hypothetical protein	NA	NA	NA	NA
WP_000968700.1\|906631_906928_+	hypothetical protein	NA	NA	NA	NA
WP_000115421.1\|907005_907464_+	hypothetical protein	NA	NA	NA	NA
WP_001097965.1\|907552_909502_+	DUF1738 domain-containing protein	A0A2K9V411	Faecalibacterium_phage	5.9e-31	38.3
WP_000881183.1\|909573_910482_+	hypothetical protein	NA	NA	NA	NA
WP_000022217.1\|910555_911455_+	hypothetical protein	NA	NA	NA	NA
WP_000911568.1\|911529_911856_+	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_001222413.1\|911955_912225_-	hypothetical protein	NA	NA	NA	NA
WP_000457555.1\|912356_913631_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.5e-152	62.0
WP_001039750.1\|913849_914227_+	hypothetical protein	NA	NA	NA	NA
WP_001775272.1\|914313_914532_-	ogr/Delta-like zinc finger family protein	E5G6Q4	Salmonella_phage	4.9e-27	75.0
WP_001011750.1\|914599_915700_-	phage late control D family protein	E5G6Q3	Salmonella_phage	7.9e-190	92.1
WP_000980405.1\|915696_916182_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-71	93.2
WP_161976233.1\|916181_918728_-\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	1.2e-113	42.7
WP_000763315.1\|918954_919074_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
WP_001280965.1\|919088_919391_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
WP_001207653.1\|919445_919961_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
WP_000046101.1\|919970_921143_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.8e-223	99.5
WP_000388790.1\|921245_921464_-	Hin recombinase	A0A1S6L009	Salmonella_phage	1.4e-29	90.3
WP_000161708.1\|921677_922400_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_000006337.1\|922597_923005_-\|tail	tail fiber assembly protein	A0A1B0V844	Salmonella_phage	4.1e-59	84.2
WP_000104806.1\|923011_924631_-\|tail	phage tail protein	E5G6P0	Salmonella_phage	2.7e-154	90.9
WP_001086816.1\|924627_925233_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
WP_000268327.1\|925225_926134_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.2e-155	97.0
WP_000177408.1\|926120_926480_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	6.8e-58	96.6
WP_000993749.1\|926476_927055_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.9e-108	99.5
WP_000343944.1\|927123_927570_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-66	90.4
WP_001039966.1\|927562_927994_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	2.5e-75	98.6
WP_024131238.1\|928089_928518_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	3.3e-67	97.9
WP_000731034.1\|928514_928892_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.5e-60	99.2
WP_001097942.1\|928896_929406_-	lysozyme	A0A1S6KZY9	Salmonella_phage	1.3e-91	97.0
WP_000171566.1\|929386_929602_-	hypothetical protein	E5G6N0	Salmonella_phage	3.8e-32	98.6
WP_000868184.1\|929605_929809_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000673540.1\|929808_930273_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.4e-84	98.1
WP_000059175.1\|930366_931017_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	2.4e-114	99.5
WP_000730751.1\|931020_932085_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.3e-194	98.3
WP_000216272.1\|932101_932935_-\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	6.1e-126	87.4
WP_001098453.1\|933077_934844_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.4
WP_001681813.1\|934843_935887_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.1e-176	86.6
WP_000080839.1\|935935_936631_-	hypothetical protein	NA	NA	NA	NA
WP_000789323.1\|936650_937715_-	hypothetical protein	NA	NA	NA	NA
WP_000829584.1\|937711_938776_-	hypothetical protein	NA	NA	NA	NA
WP_000835188.1\|938785_939004_-	hypothetical protein	NA	NA	NA	NA
WP_001217561.1\|939099_939333_-	DinI family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
WP_001154438.1\|939344_939533_-	hypothetical protein	A0A1S6L006	Salmonella_phage	7.9e-26	96.8
WP_000301193.1\|939700_942109_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.1
WP_000104130.1\|942099_942960_-	DNA adenine methylase	E5G6L8	Salmonella_phage	3.4e-132	81.8
WP_001090717.1\|942956_943541_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	1.1e-76	73.7
WP_000785510.1\|943537_943765_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
WP_001244240.1\|943764_943998_-	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	9.8e-26	84.4
WP_000963479.1\|944065_944407_-	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
WP_000956167.1\|944370_944571_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.6e-32	97.0
WP_000460852.1\|944578_945088_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.3e-83	94.1
WP_000102106.1\|945120_945363_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
WP_000052560.1\|945479_946112_+	helix-turn-helix domain-containing protein	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
WP_000027757.1\|946115_947141_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.7e-200	98.2
WP_001681810.1\|948247_948505_+	YjhX family toxin	NA	NA	NA	NA
WP_001681808.1\|948515_949406_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_000354257.1\|949405_950152_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000052242.1\|950453_952424_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA
WP_000431675.1\|952443_953748_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA
WP_000467404.1\|953770_954466_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA
WP_001023498.1\|954491_955286_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA
WP_000720235.1\|955295_956363_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA
WP_000632615.1\|956407_958144_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA
WP_010989299.1\|958143_960639_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA
WP_000127915.1\|960662_961709_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	A0A2K9L0I7	Tupanvirus	1.4e-74	45.0
WP_000466893.1\|961711_962989_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	M1HYW7	Paramecium_bursaria_Chlorella_virus	1.3e-21	26.7
WP_001210944.1\|963233_963773_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA
WP_001120833.1\|964626_966138_+	ATP-dependent helicase	A0A126DN25	Acinetobacter_phage	2.0e-42	29.0
WP_000488995.1\|966121_967711_+	TraI domain-containing protein	NA	NA	NA	NA
WP_000449622.1\|967874_968888_+\|integrase	site-specific integrase	NA	NA	NA	NA
974118:974134	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1121063 : 1128734

Enterobacteria_phage(33.33%)

integrase

attL 1111598:1111611|attR 1124729:1124742

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1111598:1111611	attL	NA	NA	NA	NA
WP_000152561.1\|1121063_1122554_-	alcohol dehydrogenase catalytic domain-containing protein	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	4.0e-11	36.1
WP_000772672.1\|1123024_1124290_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.6e-74	41.0
WP_000573583.1\|1124352_1125429_-	serine/threonine protein kinase	A0A2H4UU60	Bodo_saltans_virus	7.8e-17	28.2
1124729:1124742	attR	NA	NA	NA	NA
WP_000700163.1\|1125425_1126484_-	serine/threonine protein kinase	G9BWE0	Planktothrix_phage	4.9e-56	44.7
WP_000493740.1\|1126473_1127637_-	hypothetical protein	NA	NA	NA	NA
WP_000214423.1\|1127912_1128479_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.8e-60	64.9
WP_000468230.1\|1128494_1128734_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	3.7e-20	60.5

DBSCAN-SWA_3

1787137 : 1793168

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106417237.1\|1787137_1787284_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.1e-14	73.9
WP_106417236.1\|1787299_1787443_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	9.0e-14	87.8
WP_000400611.1\|1788432_1790355_-	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	5.6e-300	77.2
WP_000703599.1\|1790371_1790626_-	glycosyltransferase	A8CG95	Salmonella_phage	3.1e-25	79.5
WP_001682026.1\|1790594_1790984_-	GtrA family protein	A0A192Y6N5	Salmonella_phage	6.9e-56	91.5
WP_000377769.1\|1792226_1793168_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	2.4e-147	88.2

DBSCAN-SWA_4

2027677 : 2036848

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|2027677_2028625_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
WP_000824854.1\|2028608_2029340_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|2029320_2029428_-	protein YohO	NA	NA	NA	NA
WP_001240415.1\|2029487_2030219_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272852.1\|2030441_2032127_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.9e-278	90.7
WP_000598634.1\|2032123_2032843_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950423.1\|2032889_2033357_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.4e-74	91.0
WP_001197951.1\|2033413_2033944_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|2034115_2034574_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195339.1\|2034814_2036848_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9

DBSCAN-SWA_5

2112739 : 2123246

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001111852.1\|2112739_2114143_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-21	26.5
WP_000981469.1\|2114320_2115214_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1\|2115590_2116676_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023656.1\|2116675_2117575_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.9e-31	36.3
WP_000857536.1\|2117622_2118501_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.3e-107	64.8
WP_000973711.1\|2118501_2119053_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
WP_000018220.1\|2119058_2120033_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648783.1\|2120048_2120822_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565909.1\|2120826_2121906_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.1
WP_000126347.1\|2121932_2123246_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_6

2229546 : 2236780

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|2229546_2229966_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457648.1\|2229968_2231237_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.3e-224	91.2
WP_000208507.1\|2231682_2231895_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.5e-20	70.0
WP_024131163.1\|2231905_2232094_+	hypothetical protein	NA	NA	NA	NA
WP_001080666.1\|2232354_2233539_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.4e-107	56.4
WP_000107435.1\|2234189_2234501_+	hypothetical protein	NA	NA	NA	NA
WP_000377043.1\|2234580_2235276_+	phosphohydrolase	S4W232	Pandoravirus	2.1e-07	27.5
WP_001157299.1\|2235349_2236780_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_7

2440674 : 2445086

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000281950.1\|2440674_2441088_+	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6
WP_001766395.1\|2441104_2441833_+	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.9e-63	53.3
WP_000158843.1\|2442024_2442567_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001277616.1\|2442714_2443092_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_001529135.1\|2443164_2443974_-	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	2.1e-62	50.0
WP_000497459.1\|2444846_2445086_-	virulence protein MsgA	K7P6H1	Enterobacteria_phage	5.5e-32	87.3

DBSCAN-SWA_8

2626122 : 2699247

Burkholderia_virus(39.02%)

tail,transposase,tRNA,protease,capsid,plate,integrase

attL 2665142:2665158|attR 2698155:2698171

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000168626.1\|2626122_2627397_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	1.6e-85	42.1
WP_000765713.1\|2628145_2628751_-	glutathione transferase GstA	NA	NA	NA	NA
WP_000100913.1\|2628855_2630361_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA
WP_001030324.1\|2630961_2631597_-	endonuclease III	NA	NA	NA	NA
WP_001289628.1\|2631596_2632289_-	electron transport complex subunit E	NA	NA	NA	NA
WP_000920820.1\|2632291_2632912_-	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_000231887.1\|2632915_2633974_-	electron transport complex subunit RsxD	NA	NA	NA	NA
WP_000915581.1\|2633974_2635996_-	electron transport complex subunit RsxC	NA	NA	NA	NA
WP_001092600.1\|2635988_2636567_-	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_000133179.1\|2636566_2637148_-	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_000214061.1\|2637224_2637665_-	DUF2569 domain-containing protein	NA	NA	NA	NA
WP_000217946.1\|2637753_2637969_-	transcription modulator YdgT	NA	NA	NA	NA
WP_031608772.1\|2638267_2638393_-	division septum protein Blr	NA	NA	NA	NA
WP_000998242.1\|2638600_2639641_+	oxidoreductase	NA	NA	NA	NA
WP_000565566.1\|2639714_2640716_-	adenosine deaminase	NA	NA	NA	NA
WP_000753325.1\|2641421_2642930_-	YdgA family protein	NA	NA	NA	NA
WP_001170615.1\|2643032_2644208_-	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_000066606.1\|2644407_2646054_+	class I fumarate hydratase	NA	NA	NA	NA
WP_000259129.1\|2646221_2647625_+	class II fumarate hydratase	NA	NA	NA	NA
WP_000092483.1\|2647621_2648551_-	DNA replication terminus site-binding protein	NA	NA	NA	NA
WP_001681605.1\|2648626_2649928_-	two-component system sensor histidine kinase RstB	W8CYF6	Bacillus_phage	5.7e-14	22.7
WP_000928668.1\|2650038_2651745_-	amidohydrolase	NA	NA	NA	NA
WP_000824321.1\|2651897_2653049_-	porin OmpS2	Q1MVN1	Enterobacteria_phage	3.2e-117	59.1
WP_001080045.1\|2653529_2654261_-	two-component system response regulator RstA	NA	NA	NA	NA
WP_000524877.1\|2654387_2654723_+	GlpM family protein	NA	NA	NA	NA
WP_000412353.1\|2654784_2656167_-	amino acid permease	NA	NA	NA	NA
WP_001165548.1\|2656447_2657020_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	8.8e-84	84.7
WP_024131173.1\|2657091_2657565_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	4.3e-36	53.0
WP_024131175.1\|2657575_2658109_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	2.8e-44	58.8
WP_024131174.1\|2658119_2658596_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	1.9e-44	56.4
WP_001057643.1\|2658602_2659220_-\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	5.8e-65	59.9
WP_072074997.1\|2659219_2660215_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	3.9e-63	55.5
WP_000852584.1\|2660217_2660796_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	6.4e-66	65.8
WP_001219103.1\|2660788_2661892_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	5.4e-106	54.3
WP_000859114.1\|2661882_2662230_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	8.6e-34	60.6
WP_000148263.1\|2662286_2662814_-\|plate	phage baseplate assembly protein V	Q6QIA1	Burkholderia_phage	1.5e-21	46.5
WP_000808000.1\|2662810_2663965_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	4.7e-84	47.1
WP_000478221.1\|2663952_2664165_-\|tail	tail protein X	Q6QIA3	Burkholderia_phage	2.4e-18	60.0
WP_000458383.1\|2664164_2665049_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	7.5e-50	47.0
WP_000135574.1\|2665048_2667514_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.2e-168	42.6
2665142:2665158	attL	NA	NA	NA	NA
WP_001148841.1\|2667607_2667745_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000084228.1\|2667689_2668025_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000110118.1\|2668122_2668404_-	hypothetical protein	NA	NA	NA	NA
WP_162828734.1\|2668406_2668931_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	4.7e-68	67.2
WP_000729859.1\|2668927_2670355_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	3.7e-216	77.4
WP_000666498.1\|2670344_2670596_-	hypothetical protein	NA	NA	NA	NA
WP_001101804.1\|2670595_2671060_-	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_000271668.1\|2671059_2671506_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_000537457.1\|2671507_2671846_-	DUF2190 family protein	NA	NA	NA	NA
WP_001286905.1\|2671855_2672809_-	hypothetical protein	A4JWK0	Burkholderia_virus	5.2e-65	44.5
WP_001273072.1\|2672823_2673939_-	hypothetical protein	A4JWJ9	Burkholderia_virus	7.9e-97	51.1
WP_000135517.1\|2674153_2674612_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	1.5e-30	44.8
WP_000117561.1\|2674614_2675436_-\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	5.3e-98	61.2
WP_000090679.1\|2675416_2676913_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	8.0e-169	59.6
WP_170825686.1\|2676912_2678454_-	hypothetical protein	A4JWJ4	Burkholderia_virus	9.0e-184	62.6
WP_000124060.1\|2678504_2679050_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
WP_000227700.1\|2679049_2679361_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000175097.1\|2679360_2679687_-	membrane protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
WP_000264664.1\|2679683_2680334_-	lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
WP_001104436.1\|2680317_2681046_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.7e-61	57.4
WP_000793143.1\|2681048_2681399_-	membrane protein	A4JWP3	Burkholderia_virus	4.5e-22	53.0
WP_100208317.1\|2681642_2682239_-	nucleoid-associated protein	NA	NA	NA	NA
WP_001765083.1\|2682234_2682666_+	hypothetical protein	A4JWN3	Burkholderia_virus	4.5e-32	57.3
WP_000567456.1\|2682675_2682840_+	hypothetical protein	NA	NA	NA	NA
WP_000990529.1\|2682843_2684613_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	2.8e-229	68.5
WP_000960673.1\|2684623_2685790_+	AAA family ATPase	A4JWN1	Burkholderia_virus	3.3e-122	59.7
WP_000843446.1\|2685792_2686062_+	hypothetical protein	NA	NA	NA	NA
WP_001140134.1\|2686089_2686620_+	host-nuclease inhibitor Gam family protein	L7P7T1	Pseudomonas_phage	3.4e-58	66.1
WP_000632575.1\|2686908_2687181_+	hypothetical protein	NA	NA	NA	NA
WP_000197790.1\|2687190_2687493_+	hypothetical protein	NA	NA	NA	NA
WP_001315283.1\|2687489_2687873_+	hypothetical protein	K7PJQ4	Enterobacteria_phage	2.3e-27	58.9
WP_153781233.1\|2687880_2688081_+	hypothetical protein	NA	NA	NA	NA
WP_000131941.1\|2688077_2688761_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	2.6e-34	37.3
WP_000631816.1\|2688757_2688988_+	hypothetical protein	NA	NA	NA	NA
WP_010989166.1\|2688977_2689193_+	hypothetical protein	NA	NA	NA	NA
WP_001315282.1\|2689185_2689635_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	9.4e-25	46.6
WP_001281695.1\|2689606_2689996_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.5e-31	54.2
WP_000769298.1\|2690177_2691122_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001219360.1\|2691648_2693178_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_000014056.1\|2693188_2694577_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_001118268.1\|2694751_2695786_-	AI-2E family transporter	NA	NA	NA	NA
WP_000500278.1\|2696202_2696565_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_001183821.1\|2696551_2696881_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_000549642.1\|2696915_2697737_-\|protease	serine protease	NA	NA	NA	NA
WP_001766314.1\|2698004_2698256_-	acid shock protein	NA	NA	NA	NA
2698155:2698171	attR	NA	NA	NA	NA
WP_000431187.1\|2698649_2698832_+	hypothetical protein	NA	NA	NA	NA
WP_000502118.1\|2698788_2699247_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

3142358 : 3220559

Salmonella_phage(70.0%)

tail,transposase,protease,head,terminase,holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938184.1\|3142358_3143039_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	4.1e-80	70.1
WP_000502118.1\|3143246_3143705_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000374046.1\|3144368_3145028_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000904446.1\|3145114_3145444_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|3145440_3145722_-	acylphosphatase	NA	NA	NA	NA
WP_000502118.1\|3146458_3146917_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000140485.1\|3148048_3149260_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|3149317_3149635_+	heat shock protein HspQ	NA	NA	NA	NA
WP_001537782.1\|3149679_3150093_-	CoA-binding protein	NA	NA	NA	NA
WP_000847719.1\|3150266_3150929_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|3151023_3151482_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420526.1\|3151517_3153572_-	DNA helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
WP_001261222.1\|3153695_3154142_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950867.1\|3154160_3156314_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202371.1\|3156300_3156906_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288732.1\|3157122_3157632_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_010989142.1\|3157986_3159039_+	porin OmpA	NA	NA	NA	NA
WP_000877174.1\|3159110_3159563_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156455.1\|3159748_3161509_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|3161577_3162096_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001764860.1\|3162195_3162363_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|3162616_3163180_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433416.1\|3163176_3164817_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333152.1\|3164821_3166075_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053045.1\|3166089_3167997_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_001086472.1\|3168009_3170118_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	W6LLI2	Streptococcus_phage	5.1e-20	29.6
WP_000224084.1\|3170216_3171326_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_001220671.1\|3171322_3171865_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291724.1\|3172030_3173041_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_000193884.1\|3173248_3175861_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.1e-19	22.6
WP_000480169.1\|3176877_3177579_+	DUF1076 domain-containing protein	NA	NA	NA	NA
WP_000421106.1\|3178500_3179019_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	1.7e-46	62.8
WP_001681975.1\|3179033_3180545_-	hypothetical protein	S4TP62	Salmonella_phage	1.5e-111	59.4
WP_000049938.1\|3180544_3181225_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	6.9e-128	98.7
WP_001197092.1\|3181221_3182421_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	8.5e-214	97.5
WP_001270647.1\|3182421_3182775_-	hypothetical protein	A0A0M4R339	Salmonella_phage	3.2e-60	98.3
WP_001685627.1\|3183015_3183771_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.1e-105	85.3
WP_001144794.1\|3183829_3184258_-	hypothetical protein	NA	NA	NA	NA
WP_000050472.1\|3184257_3184989_-	hypothetical protein	NA	NA	NA	NA
WP_000826019.1\|3185183_3185519_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-20	52.2
WP_000042301.1\|3185515_3186547_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.2e-96	51.4
WP_000388505.1\|3186549_3186852_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	57.0
WP_000346974.1\|3186855_3187506_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.0e-56	60.6
WP_000990867.1\|3187505_3189458_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	1.8e-181	56.0
WP_000389047.1\|3189635_3190088_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.9e-57	76.6
WP_000257259.1\|3190091_3190532_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	3.5e-56	74.7
WP_001135544.1\|3190543_3191689_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-163	74.5
WP_000389379.1\|3191692_3192256_-	hypothetical protein	A0A0M4R331	Salmonella_phage	8.9e-81	75.3
WP_001142488.1\|3192230_3192620_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	98.4
WP_000008737.1\|3192606_3193161_-	hypothetical protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
WP_001125675.1\|3193157_3193565_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	7.1e-72	97.8
WP_001040702.1\|3193530_3193899_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
WP_000627464.1\|3193940_3194882_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
WP_000128060.1\|3194893_3195391_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
WP_000873182.1\|3195395_3196628_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.4e-227	99.0
WP_138010671.1\|3196642_3197380_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	7.8e-101	88.1
WP_000113511.1\|3197264_3198734_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.7e-280	99.2
WP_000204794.1\|3198733_3200137_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	6.5e-189	70.1
WP_001118118.1\|3200102_3200855_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	3.4e-11	56.5
WP_001070544.1\|3200944_3201172_-	hypothetical protein	NA	NA	NA	NA
WP_000495544.1\|3201268_3201646_-	hypothetical protein	Q6UAR9	Klebsiella_phage	4.9e-43	68.5
WP_001050879.1\|3201688_3202228_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.5e-08	38.4
WP_001075998.1\|3202224_3202839_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	3.2e-108	93.1
WP_000226307.1\|3202838_3203120_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
WP_001294876.1\|3203106_3203496_-\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	3.1e-40	70.2
WP_000798706.1\|3203712_3204162_+	lipoprotein	NA	NA	NA	NA
WP_001534733.1\|3204297_3204423_-	hypothetical protein	NA	NA	NA	NA
WP_001047634.1\|3204821_3205619_-	antitermination protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
WP_001617856.1\|3205608_3205755_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001096560.1\|3205751_3206363_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.5e-92	99.5
WP_000929790.1\|3206571_3207174_-	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_001217670.1\|3207508_3207748_-	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
WP_000963896.1\|3207932_3208430_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_000509711.1\|3208440_3208620_-	hypothetical protein	NA	NA	NA	NA
WP_000208073.1\|3209516_3210038_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.2e-66	68.0
WP_000445792.1\|3210041_3210515_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
WP_000065105.1\|3210514_3211039_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
WP_000113623.1\|3211035_3211383_-	DUF977 family protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
WP_000800010.1\|3211393_3212143_-	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_001681803.1\|3212145_3213129_-	replication protein	H6WRX7	Salmonella_phage	2.1e-162	99.7
WP_001574095.1\|3213213_3213588_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000869365.1\|3213553_3213790_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.1e-37	98.7
WP_001009036.1\|3213919_3214324_+	transcriptional regulator	H6WRX4	Salmonella_phage	7.1e-72	99.3
WP_000186242.1\|3214612_3214813_+	cell division protein FtsZ	G8C7T2	Escherichia_phage	2.4e-12	48.4
WP_000995349.1\|3214903_3215200_+	host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	4.4e-47	96.9
WP_001764962.1\|3215205_3215991_+	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	9.7e-150	99.6
WP_000187053.1\|3215987_3216668_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.9e-130	98.7
WP_000034527.1\|3216745_3217810_+	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	6.3e-152	74.6
WP_010989138.1\|3217806_3218688_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4R347	Salmonella_phage	1.2e-153	93.0
WP_001754984.1\|3218693_3218933_+	DUF4060 family protein	S4TR31	Salmonella_phage	9.7e-37	96.2
WP_000065276.1\|3218973_3219222_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262313.1\|3219266_3220559_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	5.0e-252	99.8

DBSCAN-SWA_10

3291684 : 3298996

Ralstonia_phage(16.67%)

protease,integrase

attL 3286553:3286567|attR 3297732:3297746

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3286553:3286567	attL	NA	NA	NA	NA
WP_001539594.1\|3291684_3292062_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
WP_001117984.1\|3292223_3292421_+	hypothetical protein	NA	NA	NA	NA
WP_000934058.1\|3292632_3294909_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-164	42.2
WP_000520789.1\|3294939_3295260_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|3295583_3295805_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125880.1\|3295934_3297881_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
3297732:3297746	attR	NA	NA	NA	NA
WP_001201759.1\|3297877_3298996_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8

DBSCAN-SWA_11

3954592 : 4008386

Enterobacteria_phage(33.33%)

tRNA,tail,integrase

attL 3976412:3976427|attR 3987769:3987784

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000469802.1\|3954592_3955360_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|3955404_3955953_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|3955971_3956220_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460052.1\|3956563_3957925_-	signal recognition particle protein	NA	NA	NA	NA
WP_001537507.1\|3958090_3958882_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_127172650.1\|3958901_3960188_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001682111.1\|3960308_3960866_+	hypothetical protein	NA	NA	NA	NA
WP_001518875.1\|3960947_3961538_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059155.1\|3961661_3962540_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880973.1\|3962625_3964287_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203445.1\|3964435_3964774_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000884725.1\|3964939_3965230_-	RnfH family protein	NA	NA	NA	NA
WP_000242603.1\|3965219_3965696_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|3965845_3966328_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_001237648.1\|3966947_3977822_+	Ig-like domain repeat protein	NA	NA	NA	NA
3976412:3976427	attL	NA	NA	NA	NA
WP_000533850.1\|3977885_3979295_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_000196137.1\|3979291_3981448_+	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_010989217.1\|3981479_3982643_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_000124721.1\|3983261_3984461_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	4.8e-108	50.6
WP_001269066.1\|3984495_3985242_-	hypothetical protein	S5W9H2	Leptospira_phage	3.0e-07	42.6
WP_000868779.1\|3985238_3986060_-	hypothetical protein	NA	NA	NA	NA
WP_000446132.1\|3986379_3986952_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.2e-95	97.3
WP_021038238.1\|3987025_3987526_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_001283036.1\|3987522_3988257_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.2e-130	99.2
3987769:3987784	attR	NA	NA	NA	NA
WP_001149156.1\|3988808_3989075_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	6.3e-45	98.9
WP_000980224.1\|3989071_3989662_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	5.3e-60	90.3
WP_001244665.1\|3989654_3989942_+	hypothetical protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
WP_000459302.1\|3989934_3990390_+	hypothetical protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
WP_000856729.1\|3990525_3990846_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000783673.1\|3990860_3993194_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	99.0
WP_000151542.1\|3993817_3994591_-	reverse transcriptase	NA	NA	NA	NA
WP_000380485.1\|3994559_3994733_-	hypothetical protein	NA	NA	NA	NA
WP_000972389.1\|3994994_3995213_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	1.9e-18	71.9
WP_001011760.1\|3995303_3996404_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
WP_000980381.1\|3996400_3996886_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
WP_001282796.1\|3996882_3999960_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
WP_000763311.1\|3999952_4000072_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001280897.1\|4000086_4000389_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
WP_001207656.1\|4000443_4000959_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_000046142.1\|4000968_4002141_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
WP_000905046.1\|4002283_4002850_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_001221113.1\|4003533_4004649_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
WP_001111827.1\|4004729_4008386_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.0e-44	28.6

DBSCAN-SWA_12

4325821 : 4369003

Bacillus_virus(25.0%)

transposase,tRNA,protease,bacteriocin,integrase

attL 4315937:4315950|attR 4374934:4374947

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4315937:4315950	attL	NA	NA	NA	NA
WP_001204111.1\|4325821_4326280_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000034386.1\|4326469_4327549_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000111274.1\|4327650_4328814_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_000218338.1\|4328835_4329882_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_000218564.1\|4330255_4330681_+	DNA-binding protein	NA	NA	NA	NA
WP_000124001.1\|4330706_4331285_+	ECF transporter S component	NA	NA	NA	NA
WP_000553254.1\|4331285_4331993_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_001775599.1\|4331980_4332658_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_000956919.1\|4332651_4333308_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.6e-09	28.6
WP_000502119.1\|4333412_4333871_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000098658.1\|4334059_4336051_-	transketolase	NA	NA	NA	NA
WP_000701830.1\|4336326_4337085_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_000105550.1\|4337185_4338106_-	agmatinase	NA	NA	NA	NA
WP_001278580.1\|4338333_4340310_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_000729109.1\|4340318_4340450_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_077905074.1\|4340583_4340748_+	hypothetical protein	NA	NA	NA	NA
WP_001803086.1\|4340744_4341044_-	hypothetical protein	NA	NA	NA	NA
WP_001062140.1\|4341099_4342254_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.5e-130	63.9
WP_001113171.1\|4342746_4344141_+	galactose/proton symporter	NA	NA	NA	NA
WP_000856775.1\|4344219_4344717_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286121.1\|4344812_4345520_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001800534.1\|4345596_4346328_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593242.1\|4346347_4347295_+	glutathione synthase	NA	NA	NA	NA
WP_001053167.1\|4347510_4348074_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_001285491.1\|4348073_4348490_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_000098333.1\|4348536_4349223_-	global regulatory protein	NA	NA	NA	NA
WP_001055657.1\|4349352_4350333_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997790.1\|4350350_4351055_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_001094848.1\|4351073_4351640_+	YggT family protein	NA	NA	NA	NA
WP_001277205.1\|4351636_4351927_+	YggU family protein	NA	NA	NA	NA
WP_001174773.1\|4351934_4352528_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_001096530.1\|4352520_4353657_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000252198.1\|4353747_4354755_-	DUF1202 domain-containing protein	NA	NA	NA	NA
WP_000394189.1\|4354887_4355934_-	L-asparaginase 2	NA	NA	NA	NA
WP_000502119.1\|4356252_4356711_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000984827.1\|4356833_4357553_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001107559.1\|4357602_4357929_-	YggL family protein	NA	NA	NA	NA
WP_000786887.1\|4357928_4358648_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001148958.1\|4358802_4359855_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091706.1\|4359882_4360158_+	oxidative damage protection protein	NA	NA	NA	NA
WP_000976287.1\|4360270_4361356_+	membrane-bound lytic murein transglycosylase MltC	A0A0H3V0Q1	Geobacillus_virus	5.8e-12	39.0
WP_001049802.1\|4361572_4362829_+	nucleoside permease	NA	NA	NA	NA
WP_000234466.1\|4365439_4366147_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001681938.1\|4366488_4366773_+	DUF4102 domain-containing protein	A0A0P0IRB7	Acinetobacter_phage	3.2e-10	35.2
WP_014341481.1\|4366957_4367302_+\|integrase	integrase	NA	NA	NA	NA
WP_001141622.1\|4368422_4368740_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_000768134.1\|4368736_4369003_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
4374934:4374947	attR	NA	NA	NA	NA

DBSCAN-SWA_13

4746842 : 4772283

Salmonella_phage(87.1%)

tail,terminase,head,capsid,portal,plate,lysis,integrase

attL 4741806:4741820|attR 4753972:4753986

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4741806:4741820	attL	NA	NA	NA	NA
WP_001012560.1\|4746842_4748489_-	acetolactate synthase 2 catalytic subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	9.0e-65	31.5
WP_001311244.1\|4748628_4748727_-	ilv operon leader peptide	NA	NA	NA	NA
WP_000290950.1\|4749352_4750405_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
WP_000900883.1\|4750593_4750785_-	hypothetical protein	A0A0R6PIH8	Moraxella_phage	6.8e-09	65.9
WP_001047327.1\|4750800_4751370_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	2.5e-38	43.4
WP_001247706.1\|4751495_4751717_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|4751749_4752259_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956176.1\|4752266_4752563_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	4.9e-22	90.4
WP_000996717.1\|4752680_4753022_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_001244218.1\|4753089_4753323_+	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	2.0e-31	94.8
WP_000752613.1\|4753322_4753550_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
WP_000104152.1\|4753546_4754404_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.5e-161	97.2
4753972:4753986	attR	NA	NA	NA	NA
WP_000017503.1\|4754400_4756815_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_001580533.1\|4756968_4757157_+	hypothetical protein	E5G6M0	Salmonella_phage	7.9e-26	95.2
WP_000822803.1\|4757224_4757524_-	hypothetical protein	NA	NA	NA	NA
WP_001251692.1\|4757632_4758511_-	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	6.1e-52	49.4
WP_001146827.1\|4759124_4760039_+	hypothetical protein	NA	NA	NA	NA
WP_000185757.1\|4760035_4760776_+	restriction endonuclease	NA	NA	NA	NA
WP_000518064.1\|4760810_4761848_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.3e-173	89.5
WP_001098422.1\|4761847_4763614_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_000216244.1\|4763756_4764590_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.5e-121	90.6
WP_000742518.1\|4764606_4765665_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.4e-180	93.1
WP_000059191.1\|4765668_4766319_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_000673504.1\|4766414_4766879_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.4e-76	89.0
WP_000868175.1\|4766878_4767082_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000171568.1\|4767085_4767301_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_001069905.1\|4767281_4767794_+	lysozyme	E5G6N1	Salmonella_phage	3.1e-88	92.3
WP_000727853.1\|4767795_4768173_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.3e-16	40.0
WP_001080928.1\|4768169_4768598_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.2e-47	77.3
WP_001039939.1\|4768693_4769125_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
WP_000829146.1\|4769117_4769564_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
WP_000993754.1\|4769632_4770211_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
WP_000177595.1\|4770207_4770567_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	6.1e-51	84.9
WP_000268271.1\|4770553_4771462_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.3e-142	89.7
WP_001086816.1\|4771454_4772060_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
WP_000104778.1\|4772056_4772283_+\|tail	phage tail protein	E5G6P0	Salmonella_phage	1.7e-30	93.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage