CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP010826	Thermus aquaticus Y51MC23 plasmid pTA78, complete sequence	0 crisprs	DinG,cas3	0	6
NZ_CP010823	Thermus aquaticus Y51MC23 plasmid pTA14, complete sequence	0 crisprs	NA	0	0
NZ_CP010824	Thermus aquaticus Y51MC23 plasmid pTA16, complete sequence	0 crisprs	NA	0	0
NZ_CP010822	Thermus aquaticus Y51MC23, complete genome	10 crisprs	cas1,csx1,Cas9_archaeal,Cas14b_CAS-V-F,c2c9_V-U4,csa3,cas2,cas5,cas7,cas8b1,cas6,cas3,cas4,DEDDh,RT,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5	3	1
NZ_CP010825	Thermus aquaticus Y51MC23 plasmid pTA69, complete sequence	0 crisprs	c2c9_V-U4	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 4378

uncultured_Mediterranean_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050764284.1\|68_1121_+	hypothetical protein	NA	NA	NA	NA
WP_003048832.1\|1303_4378_+	DUF1998 domain-containing protein	A0A1B1IUF6	uncultured_Mediterranean_phage	2.3e-29	23.3

DBSCAN-SWA_2

14699 : 19754

Diadromus_pulchellus_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003048856.1\|14699_19754_+	RecQ family ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	3.2e-52	37.2

DBSCAN-SWA_3

27506 : 28292

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003048873.1\|27506_28292_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.2e-13	27.6

DBSCAN-SWA_4

32979 : 35645

environmental_halophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003048888.1\|32979_33951_+	ribonucleotide-diphosphate reductase subunit beta	Q2XUY1	environmental_halophage	1.1e-75	43.6
WP_040684603.1\|33971_35645_+	ribonucleoside-diphosphate reductase subunit alpha	Q2XUY0	environmental_halophage	8.3e-183	55.6

DBSCAN-SWA_5

58129 : 58378

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040684625.1\|58129_58378_-	type II toxin-antitoxin system HicA family toxin	A0A1P8VVU8	Streptococcus_phage	6.0e-05	44.4

DBSCAN-SWA_6

68754 : 77309

uncultured_Mediterranean_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003048940.1\|68754_69726_+	AAA family ATPase	Q7Y3Y6	Yersinia_phage	5.1e-07	30.2
WP_003048942.1\|69722_70607_+	ParB/RepB/Spo0J family partition protein	A0A2K9V477	Faecalibacterium_phage	1.3e-09	25.8
WP_081453683.1\|70618_73375_+	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	2.1e-42	27.2
WP_003048947.1\|73379_77309_+	N-6 DNA methylase	A0A1B1IUC6	uncultured_Mediterranean_phage	6.6e-29	27.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010822

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010822_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010822_1

81689-82168

Unclear

III-A

Consensus_repeat	Method
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	PILER-CR
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CRISPRCasFinder
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CRT

6 spacers

cas2,cas1,csx1

The CRISPR arrays of NZ_CP010822_1

>merge|NZ_CP010822|1|81689-82168|PILER-CR,CRISPRCasFinder,CRT
GTCGCAATCCCCTTACGGGGCTAAGTAGTTTGCAACCCTGGCGAGCTTCCGGCGGATGTAGTTGAGGTACTAGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACCTGGGGGCCAGAGTGGAGACCACGGAAGCCGGCGTGAAGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACGTATGGGTATCCCGTAACCCAGCGTTGCCTAGCCAAGGATGGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACTGCTCAGGGAAGGCTACAAGCCGGTAGGTGGTCCTGAGTGGGCGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACCAGGAAGGTTCTGGAGTATGCCCGGGAGAATGGGGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACTTCAAACAGCCATCTCGCTCAAGAAGCGGGTAGCCAGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

>NZ_CP010822|1|1|81689-82168|PILER-CR
GTCGCAATCCCCTTACGGGGCTAAGTAGTTTGCAAC	CCTGGCGAGCTTCCGGCGGATGTAGTTGAGGTACTA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CTGGGGGCCAGAGTGGAGACCACGGAAGCCGGCGTGAA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	GTATGGGTATCCCGTAACCCAGCGTTGCCTAGCCAAGGATG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TGCTCAGGGAAGGCTACAAGCCGGTAGGTGGTCCTGAGTGGGC
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CAGGAAGGTTCTGGAGTATGCCCGGGAGAATGGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TTCAAACAGCCATCTCGCTCAAGAAGCGGGTAGCCA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

>NZ_CP010822|1|1|81689-82168|CRISPRCasFinder
GTCGCAATCCCCTTACGGGGCTAAGTAGTTTGCAAC	CCTGGCGAGCTTCCGGCGGATGTAGTTGAGGTACTA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CTGGGGGCCAGAGTGGAGACCACGGAAGCCGGCGTGAA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	GTATGGGTATCCCGTAACCCAGCGTTGCCTAGCCAAGGATG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TGCTCAGGGAAGGCTACAAGCCGGTAGGTGGTCCTGAGTGGGC
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CAGGAAGGTTCTGGAGTATGCCCGGGAGAATGGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TTCAAACAGCCATCTCGCTCAAGAAGCGGGTAGCCA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

>NZ_CP010822|1|1|81689-82168|CRT
GTCGCAATCCCCTTACGGGGCTAAGTAGTTTGCAAC	CCTGGCGAGCTTCCGGCGGATGTAGTTGAGGTACTA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CTGGGGGCCAGAGTGGAGACCACGGAAGCCGGCGTGAA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	GTATGGGTATCCCGTAACCCAGCGTTGCCTAGCCAAGGATG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TGCTCAGGGAAGGCTACAAGCCGGTAGGTGGTCCTGAGTGGGC
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CAGGAAGGTTCTGGAGTATGCCCGGGAGAATGGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TTCAAACAGCCATCTCGCTCAAGAAGCGGGTAGCCA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010822.1\|WP_003046971.1\|81387_81660_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0081_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_CP010822.1\|WP_003046986.1\|90998_91379_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
NZ_CP010822.1\|WP_040684395.1\|89618_89915_-\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212138
NZ_CP010822.1\|WP_003046966.1\|79581_80583_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP010822.1\|WP_003046981.1\|86261_86765_-\|DUF2939-domain-containing-protein	unknown	unknown	gnl\|CDD\|378575
NZ_CP010822.1\|WP_003046977.1\|83476_84682_-\|TIGR02710-family-CRISPR-associated-protein	csx1	cd09702_csx1_CAS-III	gnl\|CDD\|274263
NZ_CP010822.1\|WP_003046982.1\|86845_87913_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|377700
NZ_CP010822.1\|WP_003046948.1\|75029_75839_+\|[LysW]-aminoadipate-kinase	unknown	unknown	gnl\|CDD\|237599
NZ_CP010822.1\|WP_003046983.1\|87971_89507_+\|carboxypeptidase-M32	unknown	unknown	gnl\|CDD\|341054
NZ_CP010822.1\|WP_003046985.1\|89944_90976_-\|M42-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349906
NZ_CP010822.1\|WP_003046979.1\|84713_85328_+\|peptidoglycan-endopeptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP010822.1\|WP_003046945.1\|73977_75012_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|273832
NZ_CP010822.1\|WP_003046974.1\|82526_83477_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NZ_CP010822.1\|WP_003046980.1\|85324_86245_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NZ_CP010822.1\|WP_003046968.1\|80475_81174_-\|glucose-inhibited-division-protein-A	unknown	unknown	gnl\|CDD\|223522
NZ_CP010822.1\|WP_003046955.1\|77443_78319_+\|beta-ureidopropionase	unknown	unknown	gnl\|CDD\|143610
NZ_CP010822.1\|WP_003046962.1\|79157_79580_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NZ_CP010822.1\|WP_003046941.1\|73139_73985_+\|lysine-biosynthesis-protein-LysX	unknown	unknown	gnl\|CDD\|273994
NZ_CP010822.1\|WP_060473969.1\|75843_77439_+\|DUF1957-domain-containing-protein	unknown	unknown	gnl\|CDD\|212127
NZ_CP010822.1\|WP_003046959.1\|78315_79161_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|184435

Protein	Function_ID	Function_description	E-value
NZ_CP010822.1\|WP_003046971.1\|81387_81660_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.14368e-24
NZ_CP010822.1\|WP_003046986.1\|90998_91379_+\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	5.52698e-72
NZ_CP010822.1\|WP_040684395.1\|89618_89915_-\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212138	cd11531, NTP-PPase_BsYpjD, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain putative pyrophosphatase YpjD from Bacillus subtilis and its bacterial homologs. This family includes a putative pyrophosphatase Ypjd from Bacillus subtilis (BsYpjD) and its homologs. Although its biological role has not been described in detail, BsYpjD shows significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, BsYpjD contains a single MazG-like domain.	3.10285e-43
NZ_CP010822.1\|WP_003046966.1\|79581_80583_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	3.93821e-106
NZ_CP010822.1\|WP_003046981.1\|86261_86765_-\|DUF2939-domain-containing-protein	gnl\|CDD\|378575	pfam11159, DUF2939, Protein of unknown function (DUF2939). This bacterial family of proteins has no known function.	5.77517e-26
NZ_CP010822.1\|WP_003046977.1\|83476_84682_-\|TIGR02710-family-CRISPR-associated-protein	gnl\|CDD\|274263	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).	6.05292e-141
NZ_CP010822.1\|WP_003046982.1\|86845_87913_-\|prepilin-peptidase	gnl\|CDD\|377700	pfam06750, DiS_P_DiS, Bacterial Peptidase A24 N-terminal domain. This family is found at the N-terminus of the pre-pilin peptidases (pfam01478). It's function has not been specifically determined; however some of the family have been characterized as bifunctional, and this domain may contain the N-methylation activity (EC:2.1.1.-). It consists of an intracellular region between a pair of transmembrane. This region contains an invariant proline and two almost fully conserved disulphide bridges - hence the name DiS-P-DiS. The cysteines have been shown to be essential to the overall function of the enzyme in, but their role was incorrectly ascribed.	1.60281e-47
NZ_CP010822.1\|WP_003046948.1\|75029_75839_+\|[LysW]-aminoadipate-kinase	gnl\|CDD\|237599	PRK14058, PRK14058, [LysW]-aminoadipate/[LysW]-glutamate kinase.	3.51384e-142
NZ_CP010822.1\|WP_003046983.1\|87971_89507_+\|carboxypeptidase-M32	gnl\|CDD\|341054	cd06460, M32_Taq, Peptidase family M32, which includes thermostable carboxypeptidases TaqCP, PfuCP and FisCP. Peptidase family M32 is a subclass of metallocarboxypeptidases, distributed mainly in bacteria and archaea, whose members contain a HEXXH motif that participates in coordinating a divalent cation such as Zn2+ or Co2+. It includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). The keratin-degrading extremophilic eubacterium Fervidobacterium islandicum M32 carboxypeptidase (FisCP) plays an important role in cellular metabolism, and significantly enhances the degradation of native chicken feathers. It has been shown to mainly cleave the C-termini of peptides with a basic amino acid sequence. Novel M32 peptidases from some eukaryotes: protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, have been identified, thus making these enzymes an attractive potential target for drug development against these organisms.	0
NZ_CP010822.1\|WP_003046985.1\|89944_90976_-\|M42-family-metallopeptidase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	3.80441e-131
NZ_CP010822.1\|WP_003046979.1\|84713_85328_+\|peptidoglycan-endopeptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.77713e-32
NZ_CP010822.1\|WP_003046945.1\|73977_75012_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|273832	TIGR01850, N-acetyl-gamma-glutamyl-phosphate_reductase, N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. [Amino acid biosynthesis, Glutamate family].	1.24833e-159
NZ_CP010822.1\|WP_003046974.1\|82526_83477_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.05485e-98
NZ_CP010822.1\|WP_003046980.1\|85324_86245_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	1.50752e-74
NZ_CP010822.1\|WP_003046968.1\|80475_81174_-\|glucose-inhibited-division-protein-A	gnl\|CDD\|223522	COG0445, GidA, Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning].	7.16927e-33
NZ_CP010822.1\|WP_003046955.1\|77443_78319_+\|beta-ureidopropionase	gnl\|CDD\|143610	cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	2.40565e-111
NZ_CP010822.1\|WP_003046962.1\|79157_79580_+\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	1.35742e-60
NZ_CP010822.1\|WP_003046941.1\|73139_73985_+\|lysine-biosynthesis-protein-LysX	gnl\|CDD\|273994	TIGR02144, lysine_biosynthesis_enzyme, Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus, which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.	1.66773e-153
NZ_CP010822.1\|WP_060473969.1\|75843_77439_+\|DUF1957-domain-containing-protein	gnl\|CDD\|212127	cd10816, GH57N_BE_TK1436_like, N-terminal catalytic domain of Gh57 branching enzyme TK 1436 and similar proteins. The subfamily is represented by a novel branching-enzyme TK1436 of hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. Branching enzymes (BEs, EC 2.4.1.18) play a key role in synthesis of alpha-glucans and they generally are classified into glycoside hydrolase family 13 (GH13). However, TK1436 belongs to the GH57 family. It functions as a monomer and possesses BE activity. TK1436 is composed of a distorted N-terminal (beta/alpha)7-barrel domain and a C-terminal five alpha-helical domain, both of which participate in the formation of the active-site cleft.	0
NZ_CP010822.1\|WP_003046959.1\|78315_79161_+\|NAD+-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	3.35684e-101

>NZ_CP010822.1|WP_003046971.1|81387_81660_-|CRISPR-associated-endonuclease-Cas2
MAKRLYAVAYDIPDDTRRIKLANLLKSYGERVQLSVFECYLDEKLLEDLRARARRLLDLGQDALRIYPVAGRVEVLGVGPLPSPRELAVV
>NZ_CP010822.1|WP_003046968.1|80475_81174_-|glucose-inhibited-division-protein-A
MDRYQVLIVGAGFSGAEAAFRLASQGVRVGLLTQSLDSVMMPFLPPRPPFPKGSLLERAYDPKDPRVWAFHARAKYLLEGERNLHLFQATATGLLLEGERVVGVRTWEGPPALADRVVLAVGSFLGARLLIGEVEEEAGRLSEASYPDLLEDLLSLGFRFVEREGSVPETPSTPGYRVRYLAFHPEEWEEGTFRLKRLEGLYAVGLCVREGDYALMSEEGKRLAEHLLHELG
>NZ_CP010822.1|WP_003046966.1|79581_80583_+|A/G-specific-adenine-glycosylase
MKAWQEALLAWYRKHARPLPWRGEKDPYRILVSEVLLQQTQVRQAIPYYRRFLQRFPTLKALGEAPLEEVLRVWQGAGYYRRAVHLHRLAQQVEALPQSFAQLKGLPGLGPYTAAAVASMAFGERVAAVDGNVRRVLARLFALEGASPKALQGLAQSLMPEEAHPGEWNQALMELGATVCLPRKPLCGACPLASRCRGKEAPERYPLPQRRKVREERLAALVLLGRKGVYLERLEGRFQGLYGVPLFPAEELPVRAEALGVAPRLLGEVRHALTHRRLLVEVHGAFWEGEGEDPWKRPLPKLMEKVLRQALPLLAHEGVVPLPHAKPHGVEPF
>NZ_CP010822.1|WP_003046962.1|79157_79580_+|CoA-binding-protein
MSDQELKTYLSRAKTIAVLGAHKDPSRPAHYVPRYLLERGYRILPVNPRFAGEELFGEKVAASLLELQGPVDILDVFRPGEALMAHLEEILALRPGLVWLQSGIRNPAFEERVREAGIPLVADRCLMVEHRRLFFGSIPL
>NZ_CP010822.1|WP_003046959.1|78315_79161_+|NAD+-synthase
MRVIEASRLGESLELNWPLVADFLTRFIREELAWRGYEKAIVAVSGGVDSATTLALAVRALGQDRVHALFLPHRDSSPLSREHAYLVAETFGVALEEVDITPMVEAYAALTPDLTPHRKGNVMARTRMVVLFDKSQAYQALPLGTGNKTERLFGYYTWHGDDTPPVNPLGDLYKTQVWRLAEYLGVPEAVVKKPPTADLIPGQTDEADLGVRYLRADVILEHYLKGYPDGYLLGLGFTEEEIRRVKEGVNRTHWKRALPTVALLSSTAIGEFYLRPLDYRP
>NZ_CP010822.1|WP_003046955.1|77443_78319_+|beta-ureidopropionase
MARHAVLQFRPEKSRLKESLLRLRAHLEALRPHAPEVVVLPEAALTGYFLQGGVRELALTRHELLELFSELHQALGWEGLLDVVVGFYERDGGAYYNSAAYLELPHRVVHVHRKVFLPTYGVFDEERYLARGSRVAAFTTRFGRAAILICEDFWHSITAAIAALDGAEVIYVPAASPARGFQGERPENVERWRNLARAVAAEHGVYVVLASLVGFEAGKGMSGGSLAVGPDGRVLAEAPLFEEAALLFALDRERIPPVRYDAPLLSDLEASLPLLLPDLERLAKGGLKEVP
>NZ_CP010822.1|WP_060473969.1|75843_77439_+|DUF1957-domain-containing-protein
MARFALVLHAHLPYVRSHGLWPFGEETLYEAMAETYLPLLRALERLWQEGVEARFTLGITPILAEQLGDAKVKAGFQAYAKDRLERAQSDYLRYQGTELEKSARHQVAFWELTLDHFHHLGGDTLQAFRRAQDRGQVELITSNATHGYSPLLGYDEALWAQVKTGVAVYRRHFAKDPMGFWLPEMAYRPRGYWKPPVEGAREGLRAGVDELLMRAGIRYTFVDAHLVQGGEALSPYGEASLAQVESAEATYYVHELESGLRVLVRNQETTLQVWSADHGYPGEGLYREFHRKDPVSGLHHWRVTHRKADLAAKAPYDPEAAFAKAKEHAEHFVGLVARLAQGRPEGVILSPYDAELFGHWWYEGVAWLEEVLRRLSRLPGVKAVTAREAVQGKAVRARLPEGSWGRGGDHRVWLNEKTLDYWRKVYRAERALMEEARRGNLSHRHLRQAMRELLLLEASDWPFLIDTGQAEAYARERYEGHAEAFFRILRGVSEEELKALEERDNPFPEADPRLYLEGALPHSAHEPGGIG
>NZ_CP010822.1|WP_003046948.1|75029_75839_+|[LysW]-aminoadipate-kinase
MIVVKVGGAEGIDYEAVAKDAASLWKEGERLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRRTLEIFIMVYAGLVNKRLVELLQKEGVNALGLSGLDGRLLVGRRKTAVKYVEDGKVKIHRGDYTGTVEEVNKAFLDLLLGQGYLPVITPPALSYEGEAINTDGDQIAALLARVFGAEALVYLSNVPGLLAHYPDEASLVREIPVERVEDPEYLALAQGRMKRKVMGAVEAVKGGVKRVIFADARVENPIRRALSGEGTVVR
>NZ_CP010822.1|WP_003046945.1|73977_75012_+|N-acetyl-gamma-glutamyl-phosphate-reductase
MARKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTSLKFIPPEKLEPADILVLALPHGVLAREFDRYASLAPILVDLSADFRLKDPDLYRKYYGEHPRPELLGRFVYAVPELYREALREADWMAGAGCNATATLLGLYPLLKGGVLKPSPIFVTLLISTSAAGAEPSPASHHPERAGSIRVYKPTGHRHTAEVVENLPGRPEVHLTAIATDRVRGILMTAQTFLQDGWSERDVWQAYREAYGAEPFVRLVKQKKGVHRYPDPRFVQGTNYADIGFELEEDTGRLVVMVAIDNLVKGTAGHALQALNIRLGLPETLGLDFPGLHP
>NZ_CP010822.1|WP_003046941.1|73139_73985_+|lysine-biosynthesis-protein-LysX
MLAILYDRIRPDEKMLFERAEALGLPFKKVYVPALRMVLGERPKELEGVTVALERCVSQSRGLAVARYLTALGIPVVNRPEVIETCGDKWATSVALERAGLPQPKTALLTEAEEALKLMEAWGYPVVLKPVIGSWGRLLAKITDREAAEAILEHKEVLGGFQHQLLYIQEYVKKPGRDIRVFVVGERAIAAIYRRSQHWITNTARGGQAENCPVTPEIAELSLRAAQAVGGGVVAIDLFESERGLLVNEVNHTMEFKNSVHTTGVDIPGEILRYAWEVAGG
>NZ_CP010822.1|WP_003046974.1|82526_83477_-|CRISPR-associated-endonuclease-Cas1
MTLHLTHQGATLRLRQGRLLLEEKGVKVGSFPARQVRRVAVWGNVRLSTPALVFLLRQGAPVFFLSLEGFLYGVAGAFPDPHPAHLRAQFGAEALPLARAFVLGKLRSALALLLRHGLPEAEEVAQALARAGEAQRLESLRGAEGEGSRAYFQGLGRLLAAQGFGGRTRRPPRDPVNAALSYGYALLLGRVLVAVRLAGLHPEVGFLHAEGRRSPALALDLMEEFRVPVVDAVVLSAFRRGHLTPAHAEAREGGVYLNEEGRRRLIELLEGRFLEEVAHPLGFRKPLGEMIELQAYRLKKAILGKEAYTPYYLRIH
>NZ_CP010822.1|WP_003046977.1|83476_84682_-|TIGR02710-family-CRISPR-associated-protein
MKVLILTVGTTREPLEVALSEHAPEGVVFLASQASHPVAAELLRDYGASFRHHTLLLEDAESLLEAYQKALLALKKALEWEAKAIVADLTGGTKPMAAGLTLALTGRGVVFSYVGGERRDPETGRVLSGHERLRLLEDPTARFGLREWAGFTRAWNALNLGMALSELESLLSRPLSPSEARFYRAMQGVVEGLVEWDRFRHQEALKRLSAHLPVALAVAEAWGHGGKVRVLKGLEALLPPLQSIVEAGEKPTFPLLQDLLANAERRAALGRFDDALARLYRALELAVEADLQERLGFTLKDPKTWPEGFPESLRERVLKPRGLMDLLEAAFDLDLAFGQRGTLAQRLYGERNRLQALLQKRHGSILAHGTRPVEREDYERLRDFLAGLDERLRPLAPWPLF
>NZ_CP010822.1|WP_003046979.1|84713_85328_+|peptidoglycan-endopeptidase
MRKAVLVLFLGFALAQPTHTVAPGDTLFSIARRYGTTVEELMRLNGLESFLIQVGQVLKLPAPSSQEGPLQEPKAEDFDLESPLVKAVFRYLGVPYKYGAGSPLSLDCSAFVAQVYAELGVALPRTSREQYRALPAADTLRPGDLVFFSFGGKDVDHVGIYLGRGVFAHASSYGSRVVIESLDAPFYKKAYRGARRVLQEAKRP
>NZ_CP010822.1|WP_003046980.1|85324_86245_-|NADPH-dependent-oxidoreductase
MDLTPILAKRRSVRRFKPVPIPPEDLEKLLFALQRAPTDASAQLYSVLRVRDPALREAIARLSGDQEHVRQAAEFFLFLADVHRLERLLLHRGQKMASWPRTALHFGVLDAGLSAAYLALTAEALGYGVCFIGGVLNEPEALLDLLRLPPGVFPVVGLALGVPDEEGPPRPRLPRHLVVHEDRYRPYTEEDLEAAFQAMAPYSRVGDWGRVLKRYFAQGGAMEAREAPYGRALARQGLEPDLPQGSPYYSLGSLIETALKEARGVLFRQGEAWLEREAEAFRGEGRPGEALVEALKKARGEVPDWP
>NZ_CP010822.1|WP_003046981.1|86261_86765_-|DUF2939-domain-containing-protein
MGRILKFSLLALVLLGIGLALYAVASPYLFLRSLQKAILEGDRMRLERMVDFPRLREGLKSQLQVHLLKSVEEEAKQNPFAGLAYLFVAGMVDPLADALVSPEGLATLGTGADPGEAPKEEVKGWRLRYVDFRTVYVHHPKDPQSCLYLERQGLFGWKVVRMEIPMN
>NZ_CP010822.1|WP_003046982.1|86845_87913_-|prepilin-peptidase
MWPLFALVLGLVIGSFLNVVIHRLPKGESLAYPPSYCPSCGHRLGPKDLVPVLSYLALRGRCRYCQSPISPRYPLVEAITGSLFLLAALFYPPSPMAFLVFAFLAFLVALAFIDLDTYELPDALTYGLLFLGLAASYFLAFPLPFRKSLDGALMAAGGLGLVAGYGGLFLRRFRERRPEVPVGPHQVHMAALLGALLGPGVGMALAFLTWALSARTGRPVVLPDRLTLPLLPVALLLAPALGLDLLESLKGSLVAAGGLALAGGLYWAFRPAPPEEEEEPVAMGYGDVKLLGALGAWLGLYAFLALLLAVFLGAAFGLVLRRQKIPFGPYLALGGVVAFFFGEAIWKAYLHLLGI
>NZ_CP010822.1|WP_003046983.1|87971_89507_+|carboxypeptidase-M32
MTPEAAYQNLLEFQRETAYLGSLGALAAWDQRTMIPRKGHGHRARQMAALARLLHERATDPRIGEWLEKVEGSSLVEDPLSDAAVNVRAWRRAYERARAIPERLAVELAQARSEGETAWEALRPRDDWQGFLPYLKRLFALAKEEAEILMAVGPDPLDPPYGELYDALLDGYEPGARARDLEPLFRELSSGLKGLLDRILGSGRRPDVGVLHRHYPKEAQRAFALELLQACGYDLEAGRLDPTAHPFEISIGPGDVRITTRYYEDFFNAGIFGTLHEMGHALYEQGLPEAHWGTPRGEAASLGVHESQSRTWENLVGRSLGFWERFFPRAKEVFSSLADVRLEDFHFAVNAVEPSLIRVEADEVTYNLHILVRLELELALFRGELFLEDLPEAWREKYRAYLGVAPRDYKDGVMQDVHWSGGMFGYFPTYTLGNLYAAQFFAKAQEELGPLEPLFARGEFAPFLDWTRRKIHAEGSRFRPRALVERVTGSPPGAQAFLRYLEAKYRALYGF
>NZ_CP010822.1|WP_040684395.1|89618_89915_-|nucleotide-pyrophosphohydrolase
MVDAWIGQFAEGYFPPLLMLARLTEELGEVARVLAHRHGKTPKPGEEEGDLAMELADLLFVLISLANREGIDLEEAFLKAMEKYRKRDSARWTPKELE
>NZ_CP010822.1|WP_003046985.1|89944_90976_-|M42-family-metallopeptidase
MDYAPDLAFLERLLLATGPSGFEEEAAQVFLEKASTFAEAERDRHGNVYARLNPGQRPKVLLMGHLDEIGVIVSHVEEKGFLRLRPLGGWDPQVLVGQRLRFLGKKGPVLGVVGRKAIHVLKEEERKKAVEMAELFADIGAESREEALAYLEVGAVGVLDQAPEWLLGKRLVSKALDNRLGAFVVLEALRLLKDRTPCEVVAVGTAQEEIGAYGARTAAFREAPDLALVVDVHHDSATPGMEKGLVGEAELGKGVVLDVGPFVDKEVLRGLKAAAEREGIPYVLHAHGSHSGTDADEVAKVREGIPTGIVSIPLRYMHSPVEMVDFRDVERAVRLLAAFVRGV
>NZ_CP010822.1|WP_003046986.1|90998_91379_+|methylglyoxal-synthase
MKYLALIAHDAKKEEMVAFAKRHRDLLARFPLLATGTTGARVQEATGLPVERVLSGPLGGDQQIGARVAEGRVLAVIFLQDPLSAKPHEPDVQALMRVCNVHQVPLATNLAAAEALVAWLRDQATT

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Crispr_ID: NZ_CP010822_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010822_2

147410-147507

Orphan

Consensus_repeat	Method
ATCATCTGACTACCTGACTACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010822_2

>merge|NZ_CP010822|2|147410-147507|CRISPRCasFinder
ATCATCTGACTACCTGACTACCGGAGGCACGAAGCCCGTGCAGAACGGGGTTTCTCGGGTAGTCAGATGGTCGGGCTCATCTGACTACCTGACTACCG

>NZ_CP010822|2|2|147410-147507|CRISPRCasFinder
ATCATCTGACTACCTGACTACCG	GAGGCACGAAGCCCGTGCAGAACGGGGTTTCTCGGGTAGTCAGATGGTCGGG
CTCATCTGACTACCTGACTACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010822.1\|WP_003047155.1\|145411_145987_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003047151.1\|145027_145408_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376366
NZ_CP010822.1\|WP_003047177.1\|151343_151700_+\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|182075
NZ_CP010822.1\|WP_003047142.1\|143532_144195_-\|peptidase-S24	unknown	unknown	gnl\|CDD\|119397
NZ_CP010822.1\|WP_003047184.1\|153809_155291_+\|DUF935-family-protein	unknown	unknown	gnl\|CDD\|368731
NZ_CP010822.1\|WP_003047182.1\|153600_153834_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003047179.1\|151725_152046_+\|transcriptional-regulator,-Fis-family	unknown	unknown	gnl\|CDD\|226132
NZ_CP010822.1\|WP_155982892.1\|142764_143133_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003047134.1\|141212_141440_+\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NZ_CP010822.1\|WP_003047136.1\|141629_142763_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP010822.1\|WP_003047162.1\|147558_149187_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_CP010822.1\|WP_081453660.1\|144249_144492_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP010822.1\|WP_003047185.1\|155271_156714_+\|phage-head-morphogenesis-protein,-SPP1-gp7-family	unknown	unknown	gnl\|CDD\|309383
NZ_CP010822.1\|WP_003047171.1\|149874_150987_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|184909
NZ_CP010822.1\|WP_003047174.1\|150990_151158_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003047180.1\|152042_153323_+\|protein-of-unknown-function-DUF264	unknown	unknown	gnl\|CDD\|222858
NZ_CP010822.1\|WP_003047148.1\|144732_145035_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_060473973.1\|149183_149861_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003047157.1\|145995_146622_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214926
NZ_CP010822.1\|WP_003047145.1\|144484_144718_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935

Protein	Function_ID	Function_description	E-value
NZ_CP010822.1\|WP_003047136.1\|141629_142763_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.90456e-50
NZ_CP010822.1\|WP_003047151.1\|145027_145408_+\|hypothetical-protein	gnl\|CDD\|376366	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found.	0.00586809
NZ_CP010822.1\|WP_003047177.1\|151343_151700_+\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|182075	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.	2.9914e-23
NZ_CP010822.1\|WP_003047142.1\|143532_144195_-\|peptidase-S24	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	8.07631e-23
NZ_CP010822.1\|WP_003047134.1\|141212_141440_+\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	6.79369e-09
NZ_CP010822.1\|WP_003047179.1\|151725_152046_+\|transcriptional-regulator,-Fis-family	gnl\|CDD\|226132	COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].	0.000394784
NZ_CP010822.1\|WP_003047162.1\|147558_149187_+\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	9.99555e-30
NZ_CP010822.1\|WP_081453660.1\|144249_144492_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.03207e-12
NZ_CP010822.1\|WP_003047171.1\|149874_150987_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|184909	PRK14945, PRK14945, DNA polymerase III subunit beta; Provisional.	2.34536e-113
NZ_CP010822.1\|WP_003047185.1\|155271_156714_+\|phage-head-morphogenesis-protein,-SPP1-gp7-family	gnl\|CDD\|309383	pfam04233, Phage_Mu_F, Phage Mu protein F like protein. Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).	3.36975e-19
NZ_CP010822.1\|WP_003047180.1\|152042_153323_+\|protein-of-unknown-function-DUF264	gnl\|CDD\|222858	PHA02533, 17, large terminase protein; Provisional.	4.8525e-19
NZ_CP010822.1\|WP_003047184.1\|153809_155291_+\|DUF935-family-protein	gnl\|CDD\|368731	pfam06074, DUF935, Protein of unknown function (DUF935). This family consists of several bacterial proteins of unknown function as well as the Bacteriophage Mu gp29 protein.	1.02686e-50
NZ_CP010822.1\|WP_003047157.1\|145995_146622_+\|hypothetical-protein	gnl\|CDD\|214926	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	2.43127e-05
NZ_CP010822.1\|WP_003047145.1\|144484_144718_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	2.96866e-11

>NZ_CP010822.1|WP_003047157.1|145995_146622_+|hypothetical-protein
MAHRALYDPTPEEWRYYSFAPTAVRWARVALEAEGYEVEAHAALLEFGVLLAAWHPEKGTGFLLDVYDVNLVARHGPEALRKGLVRGYAANHVREDEPGYHIRRYAEAALARIVNEFAREATPGNRNNALNRMAYQLGRLVGGGLISEEEARALLFGEAEKVFEPSERAEVEGTVRSGLEAGKRKPAPRPERLLGLKPRNGVVPPWRE
>NZ_CP010822.1|WP_003047155.1|145411_145987_+|hypothetical-protein
MGIFKGMVAERSGEQAVREPGTYEFQLVEVQAGLMASQFSEEPKPALRFIFEDDEGRLSGLVNIPSIGRTPDGSYGLLYNEKSKFWQVVGALWGRAVGPQDASLLDMDIPGVNRPEDLKRLPLFFTEGQEPVKGVVIRMGEEEITAPGRPVLLTIATKEKGDRVVTNIIQYAPVPRKRAQKAAQKAAEDLW
>NZ_CP010822.1|WP_003047151.1|145027_145408_+|hypothetical-protein
MRRDWRTAWYQANPEGLVGRLRDLARSRPEAARALAMRLEREGWGPWWELLGDLQAPRALCPVCRGEGVVWTHPMARSWEVPQDLADEWWQDCHACGGEGLVPFPVDAGDYGEETPFPMAEEGQRR
>NZ_CP010822.1|WP_003047148.1|144732_145035_+|hypothetical-protein
MTRQAQVQYTTALRRVLEKYPTLPPRKRGESWEDYLQRLEDHLRVLEYAWGDWMKSPPRPEQYLEDPHWAWAWPKARGEIYLLRMALPELRRALKGVRHA
>NZ_CP010822.1|WP_003047145.1|144484_144718_+|helix-turn-helix-domain-containing-protein
MPEHPVAYNIAQAAKVLGIGERTLRYLIRAGQIRVARVGRRVLVPHSAIVEFLERGGVEQVLYGHVAVRKARVEALA
>NZ_CP010822.1|WP_081453660.1|144249_144492_+|helix-turn-helix-transcriptional-regulator
MSSTIEAVDAKRIGQVIREARLAKGLSQAKLAKMVGITQPSLSEIERGICAPSAPVMLRLFKALDISEKLIEVLQEARHA
>NZ_CP010822.1|WP_003047142.1|143532_144195_-|peptidase-S24
MVGAITDEKAGLAIRRRMRELGLSQKELGARVGKSQAWVSQELLRTPKQVIRYLWARDPEAVQRLLHVLQWTPEEFSRETGIHIPGSEIPGAIPVVRYRIPVIDAGAGPPMWNEGAEYITLHIPELRGKREEELFAVRVKGDSMEPTLRDGDIVVFWTGGAPEPGRIVAVHVHWDGVIVKRLQRYNGSWYLYSDNPDHPPVPLTENDRVLGVAATLVRKM
>NZ_CP010822.1|WP_155982892.1|142764_143133_-|hypothetical-protein
MLPGVWVRRASEVDPDTGAEMVVEVYSYGDGVIYYRASVSGVDAEPTASWLLPYLATAPFDGNPQVESKRWVEESLPKVRQGNPLKRQVGEGVFTLSGAPKRFYTLEVSHRDYESWLSQHLR
>NZ_CP010822.1|WP_003047136.1|141629_142763_-|site-specific-integrase
MARKRPPGEGSIYQRKDGLWVGAITVGYTPRGNPRRKVVYGRTRQEVARKLAELQVLHHRGLLAEPAQITVRDWAEDWLKRKAAEVRPRTLESYRYHLAKAIPSLRDPTAHDRFGRMRLQSVQPLHVRRHLDGLRLTPHAMKNIRWLLHAVFEDAVRMELIHRNPVAPVKVKGPPRKSPGRTLEPDEARRLLAALDAHPSTLALALRLMLTCGLRRGEALGLKWEDVDLKEGILHVRRAWAKVGGKGVISEPKTSSGYRAVPIPPTTLERLRAYRESVQGLSEEEVQRSWLFPGRDPSQPVHPDAPDHFLRRLLARLGLPQVRVHDLRHTYGSLLLAHGAPVELVAERMGHANPNITLGIYRHLLEEERRGWVLDIG
>NZ_CP010822.1|WP_003047134.1|141212_141440_+|preprotein-translocase-subunit-SecG
MDFLYTLVILLYLGVAGLLVYLVLVQEPKQGAGDLMGGSADLFSARGVTGGLYRLTVILGAVFAALALLIGLWPR
>NZ_CP010822.1|WP_003047162.1|147558_149187_+|ATP-dependent-helicase
MKGLTGSSRLRVYGPPGTGKTTWLKNEVERLLRSGVPGEEIAVCAFSRAAFREFASRLAGQVPEENLGTIHSLAYRAIGRPPLALTKDALSDWNRRVPDTWRVTPRVDGRGADLLDVMDPYEDEDSRPPGDKLYDRVAYLRNTLAPMAAWSEEERAFFQAWKSWMNAKGLVDFPGMLEAALAKPGGLGARFLLVDEAQDLTPLQLLLVEKWAQGARLALVGDDDQAIYGFMGADGASFLGVPVEDELVLGQSYRVPARVQRVAEAVIRRVQNRAPKRYAPRGDEGEVRLLWVPPEDPYHAVVDALERVNRGESVLFLATAKYLLEELKRELLRVGEPYANPYAPHRHSFNLFPQGARSAWEKARSFLFPNRIAADVKAWTKHVSSKVFAVKGEEARRYIESFPDEEKVGDDHPIWNVFRPEHRPHAVGRDVSWLLDHLLGNAPKTMRQSLMVALKSPEAVLQGRARVWIGTIHSVKGGEADWVYVWPGYTRKAAREHPDQLHRLFYVAATRARKGLVLMDQGKAPHGYVWPRVDEFWGEVWV
>NZ_CP010822.1|WP_060473973.1|149183_149861_+|hypothetical-protein
MSLAELVKALDEEGLTLAVEGGRPKFVGNVEAARAFLARHREEMAHYRGLLAHFLITTQDDTSEAREEFTMAYEAKLRAEAEEEIGRNVPYWLAYAFWCLLTDALSGYVRWGLERYTWAALLEAVEEGQHVGLEVRALARWARAHLAREAHLAVLRFEDPAWVEKKEKLANEAEAWAWRAWLVALAVRNRRGVSRLDPWVDLSPWVRLLAKHGRAWRLAFREEAA
>NZ_CP010822.1|WP_003047171.1|149874_150987_+|DNA-polymerase-III-subunit-beta
MLVKQKLLNRALALARGIAPSGRPLNPLWTYLYLEGREKELVIRTANEEMDLEVRLPAMGEEGGPVLVPASPFIRAVENAPGDEDEEDKEVIILIQEGQVEVRAWPWRATINAAGPEGFPAWPESDTALRTRMDAQDLLRALSQVRYAVSRESWRAIFRGVQLEFSDRGFRAVASDGYRLALFDLERPQPFTKKAVVPARSVDELMRVLRGAEGEVDLAVGTSTMTMAAWQEKGVVRIAVRLMPGEFPDYERVIPKEFPLTVTLEAEPFREALKRVSILANKENHRVDLSLEGKRALLFAEGDYGKGQEEIPVSLEGAPMSLAYDARHFLDAVSRVEGEVVMRFSGQFTPTLIEPADGSGYLAVVVPLKV
>NZ_CP010822.1|WP_003047174.1|150990_151158_+|hypothetical-protein
MFFIATYFIALVLTTATVAWVLRGGRQAPEGAVVGYMWIFLFWWGAIALIWGALK
>NZ_CP010822.1|WP_003047177.1|151343_151700_+|RusA-family-crossover-junction-endodeoxyribonuclease
MKTLDVLLPWPPSINHYWGARGRGRYLSPQARRWHKEAWAVLKAQGVRYSGEVAVYVFAHPPDRRKRDLDNITKALLDALVGAGVLKDDHQVAVLYVERRPFERPGKVRLVVGEVKRS
>NZ_CP010822.1|WP_003047179.1|151725_152046_+|transcriptional-regulator,-Fis-family
MGKLTKKRVEEAIRASHGVLAVAARALGVTRQGLYAAIQRHGLEGFLREVREEILDDVEDRLIQAALQGKPWAVMFVLKTIGKERGYTERVEQVSLEGVELKVVDG
>NZ_CP010822.1|WP_003047180.1|152042_153323_+|protein-of-unknown-function-DUF264
MKRVIPLVFPPLHPAQREVVGAAKRFNLLRCGRRWGKTTLLLRLAAQAAAERGQAVGWFAPIYSLLAPAYEELLRRTRPGVVRAAERPQPVIRYVSGGRIEFWSLDSKDVPGRGRAYDLAIIDEAAFAPSLARVWEEAILPTLLDRLGSAWIASTPKGRNAFYELWNLTLDDPAWAHFHEPSHRNPFLSQEELARMAATMTRERYRQEILAEWVDAEGRVFSEDALEAALLLQGPEDPRPGERYAAGVDLARSQDYTAVAVLRLGAQLELVRVERWRGLSYTLTARKVAALLARYEAYAHVDATGVGDAAWEGIRAEWPRVRPIRITGGRDDGRETRSKENLVGRLQSALETQELLLYPHPELLAELRAFEARPLPSGGYAYSAPEGLHDDLVMALALALDAARASRGTGQVLKVPGRWSGLRGGV
>NZ_CP010822.1|WP_003047182.1|153600_153834_+|hypothetical-protein
MAGQPASYWIRVAGRWYPWDHVRLVLREALELHLPEEERSPEARDLARFLHADRPTLVQYALARPKLEEIWRRIHEA
>NZ_CP010822.1|WP_003047184.1|153809_155291_+|DUF935-family-protein
MAKNPRSLSDLVREPSPWGWREWAPIDLAYATRVAMGGNLLPAADLVGAMLADDRVAATVGVRVRGLLALPFLVERPNDREGKTIARALEVDFFRFAPEEALYQVLAWGLILGVGLARLDWREDEETGRLLPHLEPWHPRNLFWDPQEERWYVRTREDPKHSLKEGAWWLYTPYGPRRPWEMGLWRAVALPWLIKLDAARYWARDNEVGAVRVAKVGEMSAKEEREELARLLADMGADTGLVLPPGYEMDILSPSGEVWRGREAAIAWADRAIAVAVLGQNLTTEVQGGSYAAAQVHNMVRQDLLEADAEALATSLREGVIRWWTEYNWGSARLTPWPKWDTTPPEDRRVEAETLAKLAQALQGLAQAGAPVDFRAVLEAYGVPVAQEAPTQTVRLASGDRVALSSGFVQGQLYADRVADEAIRAAVPLLRKHLDAVLRAIEEAGDYEALRRRLIDLVPEADPTELAGLMEAALLLSELAGRYAVARDVAGQR
>NZ_CP010822.1|WP_003047185.1|155271_156714_+|phage-head-morphogenesis-protein,-SPP1-gp7-family
MWRVSADPTRPEEAIAWFRARVPLTREEWDALTAKTRRKAFTVSGVALLDVVAEVWESLTKALEEGTPYEEWKREVRDKLEAAWGRRDGWRVETIFRTNVQMAYQSGRWAQLQDPEVRATHPYLMYDAVLDSRTTEICRSRNGTVLPADDPWWASNWPPLHFNCRSGVRPLTDAEASRRVIGKPAAVPPQNGFGSAPDSWEWSPEPEDYPLELLAAFKGRPYGDPERIRRSYLALVEKAQKEVEELKKKYDELNRLIEAGKIPIKEAVTRKLALLERIDHWKQAGVWGRRLFYRRDAITGPGIEVEIVSPELERVRKKIEEVAREFYLVTGQAGKVRFAVTGRIRSFYRDSEGAVYISDQILDRTGLFEATLAHEMGHWLENRANLIERTRTYLLRRSGGRPPVDLGDVMGPEYRGEMAYLGVPPFVTPYAGKFYVREGTIVATELVSVGMEHLLTDTLSFAQGDPDHFRKVLEWTGGNP

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Crispr_ID: NZ_CP010822_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010822_3

550253-550403

Orphan

I-E,II-B

Consensus_repeat	Method
GGGCCATCCCCACGTGTGTGGGGACT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP010822_3

>merge|NZ_CP010822|3|550253-550403|CRISPRCasFinder
AAAACGTCCCCACGCGCGTGGGGACTAAGGATACCTCCGGGATATCATCCTGGACATCGGCGGGCCATCCCCACGTGTGTGGGGACTACGCACCGCCCCCTGAGCGTTGCTGAGGGCTAGGGTAGGGCCATCCCCACGTGTGTGGGGACTC

>NZ_CP010822|3|3|550253-550403|CRISPRCasFinder
AAAACGTCCCCACGCGCGTGGGGACT	AAGGATACCTCCGGGATATCATCCTGGACATCGGC
GGGCCATCCCCACGTGTGTGGGGACT	ACGCACCGCCCCCTGAGCGTTGCTGAGGGCTAGGGTA
GGGCCATCCCCACGTGTGTGGGGACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010822.1\|WP_003048087.1\|555189_556578_+\|DUF3084-domain-containing-protein	unknown	unknown	gnl\|CDD\|226809
NZ_CP010822.1\|WP_003048085.1\|553000_554407_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP010822.1\|WP_003048070.1\|540896_541604_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350165
NZ_CP010822.1\|WP_003048086.1\|554460_555189_+\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213185
NZ_CP010822.1\|WP_003048091.1\|559191_559440_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_CP010822.1\|WP_040684479.1\|542459_543332_+\|phosphohydrolase	unknown	unknown	gnl\|CDD\|225831
NZ_CP010822.1\|WP_003048079.1\|547421_549527_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273429
NZ_CP010822.1\|WP_003048083.1\|551613_552528_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP010822.1\|WP_003048077.1\|545543_546497_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293811
NZ_CP010822.1\|WP_003048068.1\|540255_540882_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP010822.1\|WP_003048089.1\|557305_557893_-\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|224760
NZ_CP010822.1\|WP_003048078.1\|546493_547387_-\|phosphoglucomutase	unknown	unknown	gnl\|CDD\|100093
NZ_CP010822.1\|WP_003048072.1\|541605_542421_+\|3-hydroxybutyryl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|181070
NZ_CP010822.1\|WP_003043735.1\|543470_545099_-\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NZ_CP010822.1\|WP_003048090.1\|557902_559195_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|274665
NZ_CP010822.1\|WP_003048080.1\|549537_550251_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_040684469.1\|552527_552968_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003048088.1\|556524_557343_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP010822.1\|WP_003048066.1\|539559_540207_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP010822.1\|WP_155982910.1\|550934_551357_-\|disulfide-bond-formation-protein-B	unknown	unknown	gnl\|CDD\|179540

Protein	Function_ID	Function_description	E-value
NZ_CP010822.1\|WP_003048087.1\|555189_556578_+\|DUF3084-domain-containing-protein	gnl\|CDD\|226809	COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown].	3.4585e-24
NZ_CP010822.1\|WP_003048085.1\|553000_554407_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP010822.1\|WP_003048070.1\|540896_541604_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|350165	cd17765, PNP_ThPNP_like, purine nucleoside phosphorylases similar to Thermus thermophiles PNP. Purine nucleoside phosphorylase (PNP) catalyzes the reversible phosphorolysis of purine nucleosides. Thermus thermophiles PNP catalyzes the phosphorolysis of guanosine but not adenosine. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	4.78232e-118
NZ_CP010822.1\|WP_003048091.1\|559191_559440_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	2.48185e-38
NZ_CP010822.1\|WP_040684479.1\|542459_543332_+\|phosphohydrolase	gnl\|CDD\|225831	COG3294, COG3294, HD supefamily hydrolase [General function prediction only].	2.20036e-104
NZ_CP010822.1\|WP_003048079.1\|547421_549527_+\|AAA-family-ATPase	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP010822.1\|WP_003048083.1\|551613_552528_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	2.13608e-159
NZ_CP010822.1\|WP_003048077.1\|545543_546497_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293811	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1429 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	5.26915e-68
NZ_CP010822.1\|WP_003048068.1\|540255_540882_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.31871e-72
NZ_CP010822.1\|WP_003048089.1\|557305_557893_-\|KH-domain-containing-protein	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	1.01761e-37
NZ_CP010822.1\|WP_003048078.1\|546493_547387_-\|phosphoglucomutase	gnl\|CDD\|100093	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.	8.13057e-47
NZ_CP010822.1\|WP_003048072.1\|541605_542421_+\|3-hydroxybutyryl-CoA-dehydratase	gnl\|CDD\|181070	PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.	2.33892e-92
NZ_CP010822.1\|WP_003043735.1\|543470_545099_-\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	3.55338e-54
NZ_CP010822.1\|WP_003048090.1\|557902_559195_-\|membrane-protein-insertase-YidC	gnl\|CDD\|274665	TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here. [Protein fate, Protein and peptide secretion and trafficking].	2.16009e-79
NZ_CP010822.1\|WP_003048086.1\|554460_555189_+\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213185	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system. The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.	5.14575e-140
NZ_CP010822.1\|WP_003048088.1\|556524_557343_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	2.40393e-87
NZ_CP010822.1\|WP_003048066.1\|539559_540207_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	4.31598e-38
NZ_CP010822.1\|WP_155982910.1\|550934_551357_-\|disulfide-bond-formation-protein-B	gnl\|CDD\|179540	PRK03113, PRK03113, putative disulfide oxidoreductase; Provisional.	1.62759e-41

>NZ_CP010822.1|WP_003048080.1|549537_550251_+|hypothetical-protein
MWPPYHKARPLPVFYGKASAFFGPLAAEIAASRLPLFPYPVEDQDPWAALPCLRPLDFAGMVLEEASPPPEGMRLEAEAERAGLVDLVVPGALGLVGHYTEGLALDRLLSAFFPGSKALWLGPLRPGLAPFLRALGQVSVRAGSFAEGDSFLARLPERARGHVALRPEEVGALALKADLVIFAGGRLPLDVLQPFHVLLALAPVERGARERVLEVHGPETLLDFRAKAVLEALGYTP
>NZ_CP010822.1|WP_003048079.1|547421_549527_+|AAA-family-ATPase
MGEAHPSEEALLSSLNEAQRQAVLHFEGPALVVAGAGSGKTRTVVHRVAYLIARRGVFPSEILAVTFTNKAAEEMKARLKAMVRGAGELWVSTFHAAALRILRVYGERVGLKPGFVVYDEDDQTALLKEVLKELGLAAKPGPIKSLLDRAKNQGVPPEHLLLELPEFYAGLSRGRLQDVLHRYQEALRAQGALDFGDILLYALKLLEEDGEVLKRVRKRARFIHVDEYQDTNPVQYRFTRLLAGEEANLMAVGDPDQGIYSFRAADIRNILDFTQDYPKARVYRLEDNYRSTEAILRFANAVIVKNALRLEKTLRPVKKGGEPVRLFRAESARDEARFVAEEIARLGPPFDRVAVLYRTNAQSRLLEQALASRGIPARVVGGVGFFERAEVKDLLAYARLSLNPLDAVSLKRVLNTPPRGIGPATVEKVQAIARERGLPLFEALKVAALTLPRPEPLRAFLALMEELMDLAFGPAEAFFRHLLLATDYPAYLKEAYPEDAEDRLENVEELLRAAKEAESLMDFLDKVALTARAEEPAEAEGRVALMTLHNAKGLEFPVVFLVGVEEGLLPHRSSLSTQEGLEEERRLFYVGVTRAQERLYLSYAQEREIYGRLEPVRPSRFLEEVDEGLYEVYDPYRQSSRKPTPPPHRALPGAFRGGEKVVHPRFGPGTVVAAAGDEVTVHFEGVGLKRLSLKYADLRPA
>NZ_CP010822.1|WP_003048078.1|546493_547387_-|phosphoglucomutase
MELYPTPEGFVGELARGFTFKSAARLAAGLGEALLARGIKRAVVGHDARFLAREMAEKAARVLSGLGLETHLLLGPAPLPLFGLALETLEAGGLYLTASRRPARFQGVKLRLGPGEPLPGEALTLPETLPEPGRFAPLDLRQAYLERLLKNLGEAPKGKAGVVYLDTMGGAGGGVLPQAFRALGLAAELRELHPLPHPLFYGVDPDPKPENLKTLQVLLKAQEPPAVGFALDGDADRLAVFQVGGEALPPEAVLAGLKEALGGLEVVADGEGGYLFPWHLKEKDPFLAALLLLKVLL
>NZ_CP010822.1|WP_003048077.1|545543_546497_-|MBL-fold-metallo-hydrolase
MRELLPGLYLLPVPIPYPLKTVNLYLLLGNGEVALVDTALGTRAARGTLELYLAELGLCFADIGAVLLTHHHPDHYGLAGFLEGLGARVFLHEEELPRGHRFWREPEAFAEASLRLFLDHGMPEEALLGIQETMAKTRERVHPPQSPTPLKDGEVLEVAGRRLKVVWTPGHADGHVAFFLEEEGVLLAGDALLERVSPNVGLWAYTRENPLKDFLASLERLAELPAKVAHAGHFGPIQDVRARALELKAHHAERLEGLLALLEEPKTAWALSLKLFPQELDAAGRRFAFAETLAHLEYLRLEGLLLREGPPYRYFRA
>NZ_CP010822.1|WP_003043735.1|543470_545099_-|IS1634-family-transposase
METTPNLQVYDLGHLGLVASILDQIGLVQTVDRFVGPRPGEKVSTGMALKAAILNALGFVTSPLYLFGHFFQGKPTELLLGPGITPELLNDDRMGRMLDSLYAAGVTELFVEVAKSARRAFPFPVRALHVDSTSFHVHGVYGSGEEGQTDTGDEPLVIRLTHGYSRDHRPDLKQWVMNLICADTGGIPLLFAPGDGNQSDQEALVPLLARYRQSLELGEVVVLDGASYSQENLGALRGFSWVMRVPATLKEAKVLLREELPQEAWRPLLPGYRGLEVESEYGGVRQRWLLVESQERARMEEASLQQRIARAEGEARKVLGRLTARTFACEADARRALSEASGRLPSHRLVYLGVQEERQWERVGRPRKGERPLAVVYRLRARLEVDQEKLERARRGLGRFLLATNVLDREGLPPQEVLRRYKDQARTVERGFRFLKDPLFFAESTFLKRPERVMALGMVMALALLVYALGEWALRRRLWEAGSSLPDQKGRPTAKPTLRWVFQLFMWVRLVELGGRWFVLNLAPHHETAARLLGAGRYYLLE
>NZ_CP010822.1|WP_040684479.1|542459_543332_+|phosphohydrolase
MTEERVVHVASPKAKLYAEADQAIREHLKAFPKALKAYELLIQDPEARAGWNMANYLTMRKLGYNDHGRVHALLTGAASVAILRLLSEAGVRLDTLESGAGELEDAYVVVLLSTMLHDLGNQVHRVGHEAFGVTLALPILNRILEKIYPDPEQRTALRALILHGIYSHDLNPEPLTLEAGITAVADGTDITKGRGRKAFALGSIDIHSISALAVDEVRILKGEKVPVEIQVTMNNSAGIFQVEETLTKKVLRSPLRPYVSVVAMTEGDGGDQRIVHRVRLHESEDRFVLD
>NZ_CP010822.1|WP_003048072.1|541605_542421_+|3-hydroxybutyryl-CoA-dehydratase
MAEEHGHEFILEIPEFEHLSYEVEEGIALVTLRRPEALNALSQDLLRELAEVAEVLAQDPEARVAIFTGEGKAFAAGADLKEIAAIKDPFMAREYALLGQQVFSEIAALPIPTIAAINGYALGGGLELALACDLRVAATGARLGLPEVGLGLIPGFGGTQRLPRLIGRGRALDLIFTGRHVTAEEALSMGLVNRVGEDALEEARKLAEKILKNAPIALALAKESVVRGEGLDLAEALEIEADLFGYAAATEDMKEGVRAFLEKRPPNFKGE
>NZ_CP010822.1|WP_003048070.1|540896_541604_+|purine-nucleoside-phosphorylase
MSPIHVRGKPGEVAERVLLPGDPGRAEWIAKTFLQDPVLYTSHRGLLGYTGRYKGVPVSVQTTGMGAPSASIVAEELIGLGARVLLRVGTCGAVDEGLAPGDLVIAQGAVPLDGASRQYLEGRPYAPLPDAGLFAALWRKAEVLGYPHHVGLIATEDAFYATTPEGARAWSRFGVLAFEMEASALFLIGKMRGVRAGAILTVSNQIGDPELAPEEVLKEGVRRMVEVALEALLEV
>NZ_CP010822.1|WP_003048068.1|540255_540882_+|ATP-binding-cassette-domain-containing-protein
MRPVLEARRLGFAYEGALFRDLSFALAPGEALALLGPSGSGKTTLLHLLAGLLPLQEGEVYWEGEAIRGLSEGVLARKRLHFLGLIFQHHFLFPELTALENVLAPGYLAGRVDRTRALGLLDRLGLAKRAHFLPQRLSGGERQRVAVARALYLRPRLLLADEPTASLDRRQAREVLALLLELSREVGAALVLATHDEALVEGLPTLRL
>NZ_CP010822.1|WP_003048066.1|539559_540207_-|Crp/Fnr-family-transcriptional-regulator
MPGPLFHDLTPEEEALARSYFLRQAYPKGKPVFHQGDLGQALYLVERGRVRLFRTHLGGQEKTLGYVGPGEIFGEMSLLDGSERSASALAEEEALLLVLHREAYLALIRRLPLIAHNLARLLAHRLREADLELDLMAFEEAKSRVAYALLKLLRQGMGPKIRARQQELAALAGASRETVTRALQELKAQGAVRLAPGVVEVLSPALLEEVAFGLV
>NZ_CP010822.1|WP_155982910.1|550934_551357_-|disulfide-bond-formation-protein-B
MLGPMQRAPLLLAFAWIVALVATLGSLYYSEVRLFLPCELCWYQRIFMYPQAVILGLALWRQDFGVWPYSLALSLIGGSISTLHLLEQKFPNLFTLACKPPVPCSVEYIPQFPIPLQALIAFVLIALSMALLAREARVVR
>NZ_CP010822.1|WP_003048083.1|551613_552528_-|signal-recognition-particle-docking-protein-FtsY
MGFFDRLKAGLAKTRERLLKAIPWGGNLEEVLEELEMALLAADVGLSATEEILQEVRASGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARDYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIRFIGVGEGPDDLQPFDPEAFVEALLEE
>NZ_CP010822.1|WP_040684469.1|552527_552968_-|hypothetical-protein
MKRFLLATIALLGLATAQSAIQMRFGYGEGLGLTFGAGVESRLRQNLSGRLLAELAPAAPGVALEASLLFKPDLGQYDPTLRGLLPYFGGGLSGLLGEQSTAGVSFSAGLEGLLDPYTGLFAEATYVYGFAGFPKVWRFGLGVNFR
>NZ_CP010822.1|WP_003048085.1|553000_554407_-|glutamate--tRNA-ligase
MVVTRIAPSPTGDPHVGTAYIALFNYAWARKNGGRFIVRIEDTDRARYVPGAEERILAALKWLEIAYDEGPDIGGPHAPYRQSERLPIYKAYAEELLRRGWAYRAFETPEELERIRQEKGGYDGRARHIPPEEAEERARRGEPHVIRLKVPRPGTTEVRDELRGVVVYDNGEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYQAFGWEVPRFYHMPLLRNPDRTKISKRKSHTSLEWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFVAAFSWERVSLGGPIFDLEKLRWMNGKYIREVLSLEEVAQRVKPFLEAAGFFWPSEAYLRRAVELMRPRIDTLKELPEKAPYLFTEDYPFSEKARAKLEEGLPVLKELLPLLKAQEDWGEAALEALLRNFAAQRGLKLGQVAQPLRAALTGSLETPGLFEIMALLGRERTLSRLERALS
>NZ_CP010822.1|WP_003048086.1|554460_555189_+|LPS-export-ABC-transporter-ATP-binding-protein
MDGELVAQGLRKRYGPKEVVKGVDLHLKRGEIVALFGPNGAGKTTTFYMVVGFIRPTGGRIFLKGQEIGRLPMYKRARMGLGYLPQEPSAFRRMTVLENLLAILEFQPLSQRERLEKAKALLEELAIYHLKDRMAYALSGGERRRLEIARALCTDPDFILLDEPFTGVDPKNVREIQKVIAELRERRGVGVFVTDHAVRETLAITDRVYVMYDGEILFHGDPETFAKDQGVRRHYLGEDYEL
>NZ_CP010822.1|WP_003048087.1|555189_556578_+|DUF3084-domain-containing-protein
MTFWALLVLILLLSALVAYLGDRVAKWAGKRHFRFLGLRPRQTATLVAVMTGVGIALFSYLGFLLVFREARETILEAQAIREERDRLKGEREALLRAKEAMEAEAARALSELNALRAERKELLKALEEAEALKGRLMAEARGLQAQVAALGKEKARLEEEKTRLAALLSEKEAPLAEKERALAERTEALKALEEALRRTAAEKKRLEGEKGRLEADIALLQARLEEARRERQGLEEELSALRGRLAEAQRSLAQAEERVRGLLRQAEALAGERGQLSERLLRLSQGLYLGEVRLGAEEGRATLERVAERWALLQGFRGAELLEGEVRGPGLAVLEGAGYRDGRLLVRFRFYPEKKAFAAGEVLASATFRLSTQARHQEVLERLGEEARRRLLEAGFPPEYATFPSPEELARGLALLQGRKGVVRLGVVAAKDLWTTERPLLAYQLLGGPPGPEVPLPTQKVP
>NZ_CP010822.1|WP_003048088.1|556524_557343_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MIRLLRELERELEGAGLPKGEALDLLALAAGLPRKALLLRLSEPPPPGAEARARELLKRRLSGYPLQYLLGEVEFFGLPLKVAEGVLIPRPETEGLVELALSLPLPPRPRVLDVGTGTGAIALALKRHLPEAEVHATEVDPRALALAEENARRLGLPVHFLKAPLTGGLRGLDLIVSNPPYLPEAYREVAPKELAFENPLALYAGPEGLDVARPLAGEAWEALRPGGFLLLELAPENVGLMAEELGAMGFQEVAVLRDLLGRERYLRARRPP
>NZ_CP010822.1|WP_003048089.1|557305_557893_-|KH-domain-containing-protein
MDEKKKSIDELLSDLGVLEEAPVEVELKESGKESQTKGPKEVLEEFLVGLLLRLDPAHYVEVRQEGNLLRAEVKGGDLGRFIGKEGRTLKAVEYLAGVVLAKHFGGAYRVVLDAAGYRKRQEDKIRRLAEEAALTVELTGEPLPLPPMRPSERRIVHMLLKNHPKVTTESHGEGEERHVVVYPRDKAPPGTGEGA
>NZ_CP010822.1|WP_003048090.1|557902_559195_-|membrane-protein-insertase-YidC
MRRLIALALLLLPALALEAGFKDVDVNGDGVPEKVAVTNLMDLAFDQKGQVVGWYVKTYKGTAIGDYAKAPNLRANGPVVSPAGFTPTKAEFLVEDGRLLARFQGPEGTLTYEIAKGRYTVGVRADFPLNLRLSAQGAPRVLLEGQGEPLPSGEGQFRYLAWQTRPKAGYALVAFGEGPLEGKLVGKEGEVRLPPGREVKVYGGQNELVRFHVEGLLALPGLFTPNLWGQLSLGLLWLMEMAFRYTGSWGLAILFLTLVVRLLLWPLMHQQFKSMAEMQRLQPLIQKINEKYKDDPNKRAEATMKLYQEHKVNPAAGCLPLFIQMPILFILWKVIANYEFGQGLLWIPDLALPDPYYILPVLYVASTLLSTWLSAHGNKDIIRQGLFINLIFVFLVLQFPAGVTLYWVLSNLIGLFQQWLINKSLKPLAA
>NZ_CP010822.1|WP_003048091.1|559191_559440_-|membrane-protein-insertion-efficiency-factor-YidD
MRGLLILLVKAYRRFISPLKPRTCRFHPTCSAYALEALERHGALLGSYLAARRLLRCHPLHPGGLDPVPPVFPPKKAKEGLR

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Crispr_ID: NZ_CP010822_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010822_4

550599-550813

Orphan

I-E,II-B:I-B,III-A,III-B

Consensus_repeat	Method
CGGGCCATCCCCACGTGCGTGGGGACTAC	CRT
GGGCCATCCCCACGTGTGTGGGGACT	CRISPRCasFinder
ACGGGCCATCCCCACGTGCGTGGGGACTACGG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP010822_4

>merge|NZ_CP010822|4|550599-550813|CRT,CRISPRCasFinder,PILER-CR
CGGGCCATCTCCACGTGCGTGGTGACTACTTCCCCGCCGTGCGAGTCGCCGGAGAGGAAGTCGGGCCATCCCCACGTGCGTGGGGACTACGGGCGAGAACGCTTCCTCTCCTGGCTCCCGGACGGGCCATCCCCACGTGCGTGGGGACTACGGTATCCACCCCGGCCAGGGGGTCAAATAACCACGGGCCATCCCCACGTGCGTGGGGACTACAC

>NZ_CP010822|4|2|550599-550811|CRT
CGGGCCATCTCCACGTGCGTGGTGACTAC	TTCCCCGCCGTGCGAGTCGCCGGAGAGGAAGT
CGGGCCATCCCCACGTGCGTGGGGACTAC	GGGCGAGAACGCTTCCTCTCCTGGCTCCCGGA
CGGGCCATCCCCACGTGCGTGGGGACTAC	GGTATCCACCCCGGCCAGGGGGTCAAATAACCA
CGGGCCATCCCCACGTGCGTGGGGACTAC

>NZ_CP010822|4|4|550600-550809|CRISPRCasFinder
GGGCCATCTCCACGTGCGTGGTGACT	ACTTCCCCGCCGTGCGAGTCGCCGGAGAGGAAGTC
GGGCCATCCCCACGTGCGTGGGGACT	ACGGGCGAGAACGCTTCCTCTCCTGGCTCCCGGAC
GGGCCATCCCCACGTGCGTGGGGACT	ACGGTATCCACCCCGGCCAGGGGGTCAAATAACCAC
GGGCCATCCCCACGTGCGTGGGGACT

>NZ_CP010822|4|2|550660-550813|PILER-CR
CGGGCCATCCCCACGTGCGTGGGGACTACGGG	CGAGAACGCTTCCTCTCCTGGCTCCCGGA
CGGGCCATCCCCACGTGCGTGGGGACTACGGT	ATCCACCCCGGCCAGGGGGTCAAATAACCA
CGGGCCATCCCCACGTGCGTGGGGACTACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010822.1\|WP_003048087.1\|555189_556578_+\|DUF3084-domain-containing-protein	unknown	unknown	gnl\|CDD\|226809
NZ_CP010822.1\|WP_003048085.1\|553000_554407_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP010822.1\|WP_003048070.1\|540896_541604_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350165
NZ_CP010822.1\|WP_003048086.1\|554460_555189_+\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213185
NZ_CP010822.1\|WP_003048091.1\|559191_559440_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_CP010822.1\|WP_040684479.1\|542459_543332_+\|phosphohydrolase	unknown	unknown	gnl\|CDD\|225831
NZ_CP010822.1\|WP_003048079.1\|547421_549527_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273429
NZ_CP010822.1\|WP_003048083.1\|551613_552528_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP010822.1\|WP_003048077.1\|545543_546497_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293811
NZ_CP010822.1\|WP_003048068.1\|540255_540882_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP010822.1\|WP_003048089.1\|557305_557893_-\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|224760
NZ_CP010822.1\|WP_003048078.1\|546493_547387_-\|phosphoglucomutase	unknown	unknown	gnl\|CDD\|100093
NZ_CP010822.1\|WP_003048072.1\|541605_542421_+\|3-hydroxybutyryl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|181070
NZ_CP010822.1\|WP_003043735.1\|543470_545099_-\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NZ_CP010822.1\|WP_003048090.1\|557902_559195_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|274665
NZ_CP010822.1\|WP_003048080.1\|549537_550251_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_040684469.1\|552527_552968_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003048088.1\|556524_557343_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP010822.1\|WP_003048066.1\|539559_540207_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP010822.1\|WP_155982910.1\|550934_551357_-\|disulfide-bond-formation-protein-B	unknown	unknown	gnl\|CDD\|179540

Protein	Function_ID	Function_description	E-value
NZ_CP010822.1\|WP_003048087.1\|555189_556578_+\|DUF3084-domain-containing-protein	gnl\|CDD\|226809	COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown].	3.4585e-24
NZ_CP010822.1\|WP_003048085.1\|553000_554407_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP010822.1\|WP_003048070.1\|540896_541604_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|350165	cd17765, PNP_ThPNP_like, purine nucleoside phosphorylases similar to Thermus thermophiles PNP. Purine nucleoside phosphorylase (PNP) catalyzes the reversible phosphorolysis of purine nucleosides. Thermus thermophiles PNP catalyzes the phosphorolysis of guanosine but not adenosine. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	4.78232e-118
NZ_CP010822.1\|WP_003048091.1\|559191_559440_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	2.48185e-38
NZ_CP010822.1\|WP_040684479.1\|542459_543332_+\|phosphohydrolase	gnl\|CDD\|225831	COG3294, COG3294, HD supefamily hydrolase [General function prediction only].	2.20036e-104
NZ_CP010822.1\|WP_003048079.1\|547421_549527_+\|AAA-family-ATPase	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP010822.1\|WP_003048083.1\|551613_552528_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	2.13608e-159
NZ_CP010822.1\|WP_003048077.1\|545543_546497_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293811	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1429 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	5.26915e-68
NZ_CP010822.1\|WP_003048068.1\|540255_540882_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.31871e-72
NZ_CP010822.1\|WP_003048089.1\|557305_557893_-\|KH-domain-containing-protein	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	1.01761e-37
NZ_CP010822.1\|WP_003048078.1\|546493_547387_-\|phosphoglucomutase	gnl\|CDD\|100093	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.	8.13057e-47
NZ_CP010822.1\|WP_003048072.1\|541605_542421_+\|3-hydroxybutyryl-CoA-dehydratase	gnl\|CDD\|181070	PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.	2.33892e-92
NZ_CP010822.1\|WP_003043735.1\|543470_545099_-\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	3.55338e-54
NZ_CP010822.1\|WP_003048090.1\|557902_559195_-\|membrane-protein-insertase-YidC	gnl\|CDD\|274665	TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here. [Protein fate, Protein and peptide secretion and trafficking].	2.16009e-79
NZ_CP010822.1\|WP_003048086.1\|554460_555189_+\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213185	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system. The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.	5.14575e-140
NZ_CP010822.1\|WP_003048088.1\|556524_557343_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	2.40393e-87
NZ_CP010822.1\|WP_003048066.1\|539559_540207_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	4.31598e-38
NZ_CP010822.1\|WP_155982910.1\|550934_551357_-\|disulfide-bond-formation-protein-B	gnl\|CDD\|179540	PRK03113, PRK03113, putative disulfide oxidoreductase; Provisional.	1.62759e-41

>NZ_CP010822.1|WP_003048080.1|549537_550251_+|hypothetical-protein
MWPPYHKARPLPVFYGKASAFFGPLAAEIAASRLPLFPYPVEDQDPWAALPCLRPLDFAGMVLEEASPPPEGMRLEAEAERAGLVDLVVPGALGLVGHYTEGLALDRLLSAFFPGSKALWLGPLRPGLAPFLRALGQVSVRAGSFAEGDSFLARLPERARGHVALRPEEVGALALKADLVIFAGGRLPLDVLQPFHVLLALAPVERGARERVLEVHGPETLLDFRAKAVLEALGYTP
>NZ_CP010822.1|WP_003048079.1|547421_549527_+|AAA-family-ATPase
MGEAHPSEEALLSSLNEAQRQAVLHFEGPALVVAGAGSGKTRTVVHRVAYLIARRGVFPSEILAVTFTNKAAEEMKARLKAMVRGAGELWVSTFHAAALRILRVYGERVGLKPGFVVYDEDDQTALLKEVLKELGLAAKPGPIKSLLDRAKNQGVPPEHLLLELPEFYAGLSRGRLQDVLHRYQEALRAQGALDFGDILLYALKLLEEDGEVLKRVRKRARFIHVDEYQDTNPVQYRFTRLLAGEEANLMAVGDPDQGIYSFRAADIRNILDFTQDYPKARVYRLEDNYRSTEAILRFANAVIVKNALRLEKTLRPVKKGGEPVRLFRAESARDEARFVAEEIARLGPPFDRVAVLYRTNAQSRLLEQALASRGIPARVVGGVGFFERAEVKDLLAYARLSLNPLDAVSLKRVLNTPPRGIGPATVEKVQAIARERGLPLFEALKVAALTLPRPEPLRAFLALMEELMDLAFGPAEAFFRHLLLATDYPAYLKEAYPEDAEDRLENVEELLRAAKEAESLMDFLDKVALTARAEEPAEAEGRVALMTLHNAKGLEFPVVFLVGVEEGLLPHRSSLSTQEGLEEERRLFYVGVTRAQERLYLSYAQEREIYGRLEPVRPSRFLEEVDEGLYEVYDPYRQSSRKPTPPPHRALPGAFRGGEKVVHPRFGPGTVVAAAGDEVTVHFEGVGLKRLSLKYADLRPA
>NZ_CP010822.1|WP_003048078.1|546493_547387_-|phosphoglucomutase
MELYPTPEGFVGELARGFTFKSAARLAAGLGEALLARGIKRAVVGHDARFLAREMAEKAARVLSGLGLETHLLLGPAPLPLFGLALETLEAGGLYLTASRRPARFQGVKLRLGPGEPLPGEALTLPETLPEPGRFAPLDLRQAYLERLLKNLGEAPKGKAGVVYLDTMGGAGGGVLPQAFRALGLAAELRELHPLPHPLFYGVDPDPKPENLKTLQVLLKAQEPPAVGFALDGDADRLAVFQVGGEALPPEAVLAGLKEALGGLEVVADGEGGYLFPWHLKEKDPFLAALLLLKVLL
>NZ_CP010822.1|WP_003048077.1|545543_546497_-|MBL-fold-metallo-hydrolase
MRELLPGLYLLPVPIPYPLKTVNLYLLLGNGEVALVDTALGTRAARGTLELYLAELGLCFADIGAVLLTHHHPDHYGLAGFLEGLGARVFLHEEELPRGHRFWREPEAFAEASLRLFLDHGMPEEALLGIQETMAKTRERVHPPQSPTPLKDGEVLEVAGRRLKVVWTPGHADGHVAFFLEEEGVLLAGDALLERVSPNVGLWAYTRENPLKDFLASLERLAELPAKVAHAGHFGPIQDVRARALELKAHHAERLEGLLALLEEPKTAWALSLKLFPQELDAAGRRFAFAETLAHLEYLRLEGLLLREGPPYRYFRA
>NZ_CP010822.1|WP_003043735.1|543470_545099_-|IS1634-family-transposase
METTPNLQVYDLGHLGLVASILDQIGLVQTVDRFVGPRPGEKVSTGMALKAAILNALGFVTSPLYLFGHFFQGKPTELLLGPGITPELLNDDRMGRMLDSLYAAGVTELFVEVAKSARRAFPFPVRALHVDSTSFHVHGVYGSGEEGQTDTGDEPLVIRLTHGYSRDHRPDLKQWVMNLICADTGGIPLLFAPGDGNQSDQEALVPLLARYRQSLELGEVVVLDGASYSQENLGALRGFSWVMRVPATLKEAKVLLREELPQEAWRPLLPGYRGLEVESEYGGVRQRWLLVESQERARMEEASLQQRIARAEGEARKVLGRLTARTFACEADARRALSEASGRLPSHRLVYLGVQEERQWERVGRPRKGERPLAVVYRLRARLEVDQEKLERARRGLGRFLLATNVLDREGLPPQEVLRRYKDQARTVERGFRFLKDPLFFAESTFLKRPERVMALGMVMALALLVYALGEWALRRRLWEAGSSLPDQKGRPTAKPTLRWVFQLFMWVRLVELGGRWFVLNLAPHHETAARLLGAGRYYLLE
>NZ_CP010822.1|WP_040684479.1|542459_543332_+|phosphohydrolase
MTEERVVHVASPKAKLYAEADQAIREHLKAFPKALKAYELLIQDPEARAGWNMANYLTMRKLGYNDHGRVHALLTGAASVAILRLLSEAGVRLDTLESGAGELEDAYVVVLLSTMLHDLGNQVHRVGHEAFGVTLALPILNRILEKIYPDPEQRTALRALILHGIYSHDLNPEPLTLEAGITAVADGTDITKGRGRKAFALGSIDIHSISALAVDEVRILKGEKVPVEIQVTMNNSAGIFQVEETLTKKVLRSPLRPYVSVVAMTEGDGGDQRIVHRVRLHESEDRFVLD
>NZ_CP010822.1|WP_003048072.1|541605_542421_+|3-hydroxybutyryl-CoA-dehydratase
MAEEHGHEFILEIPEFEHLSYEVEEGIALVTLRRPEALNALSQDLLRELAEVAEVLAQDPEARVAIFTGEGKAFAAGADLKEIAAIKDPFMAREYALLGQQVFSEIAALPIPTIAAINGYALGGGLELALACDLRVAATGARLGLPEVGLGLIPGFGGTQRLPRLIGRGRALDLIFTGRHVTAEEALSMGLVNRVGEDALEEARKLAEKILKNAPIALALAKESVVRGEGLDLAEALEIEADLFGYAAATEDMKEGVRAFLEKRPPNFKGE
>NZ_CP010822.1|WP_003048070.1|540896_541604_+|purine-nucleoside-phosphorylase
MSPIHVRGKPGEVAERVLLPGDPGRAEWIAKTFLQDPVLYTSHRGLLGYTGRYKGVPVSVQTTGMGAPSASIVAEELIGLGARVLLRVGTCGAVDEGLAPGDLVIAQGAVPLDGASRQYLEGRPYAPLPDAGLFAALWRKAEVLGYPHHVGLIATEDAFYATTPEGARAWSRFGVLAFEMEASALFLIGKMRGVRAGAILTVSNQIGDPELAPEEVLKEGVRRMVEVALEALLEV
>NZ_CP010822.1|WP_003048068.1|540255_540882_+|ATP-binding-cassette-domain-containing-protein
MRPVLEARRLGFAYEGALFRDLSFALAPGEALALLGPSGSGKTTLLHLLAGLLPLQEGEVYWEGEAIRGLSEGVLARKRLHFLGLIFQHHFLFPELTALENVLAPGYLAGRVDRTRALGLLDRLGLAKRAHFLPQRLSGGERQRVAVARALYLRPRLLLADEPTASLDRRQAREVLALLLELSREVGAALVLATHDEALVEGLPTLRL
>NZ_CP010822.1|WP_003048066.1|539559_540207_-|Crp/Fnr-family-transcriptional-regulator
MPGPLFHDLTPEEEALARSYFLRQAYPKGKPVFHQGDLGQALYLVERGRVRLFRTHLGGQEKTLGYVGPGEIFGEMSLLDGSERSASALAEEEALLLVLHREAYLALIRRLPLIAHNLARLLAHRLREADLELDLMAFEEAKSRVAYALLKLLRQGMGPKIRARQQELAALAGASRETVTRALQELKAQGAVRLAPGVVEVLSPALLEEVAFGLV
>NZ_CP010822.1|WP_155982910.1|550934_551357_-|disulfide-bond-formation-protein-B
MLGPMQRAPLLLAFAWIVALVATLGSLYYSEVRLFLPCELCWYQRIFMYPQAVILGLALWRQDFGVWPYSLALSLIGGSISTLHLLEQKFPNLFTLACKPPVPCSVEYIPQFPIPLQALIAFVLIALSMALLAREARVVR
>NZ_CP010822.1|WP_003048083.1|551613_552528_-|signal-recognition-particle-docking-protein-FtsY
MGFFDRLKAGLAKTRERLLKAIPWGGNLEEVLEELEMALLAADVGLSATEEILQEVRASGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARDYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIRFIGVGEGPDDLQPFDPEAFVEALLEE
>NZ_CP010822.1|WP_040684469.1|552527_552968_-|hypothetical-protein
MKRFLLATIALLGLATAQSAIQMRFGYGEGLGLTFGAGVESRLRQNLSGRLLAELAPAAPGVALEASLLFKPDLGQYDPTLRGLLPYFGGGLSGLLGEQSTAGVSFSAGLEGLLDPYTGLFAEATYVYGFAGFPKVWRFGLGVNFR
>NZ_CP010822.1|WP_003048085.1|553000_554407_-|glutamate--tRNA-ligase
MVVTRIAPSPTGDPHVGTAYIALFNYAWARKNGGRFIVRIEDTDRARYVPGAEERILAALKWLEIAYDEGPDIGGPHAPYRQSERLPIYKAYAEELLRRGWAYRAFETPEELERIRQEKGGYDGRARHIPPEEAEERARRGEPHVIRLKVPRPGTTEVRDELRGVVVYDNGEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYQAFGWEVPRFYHMPLLRNPDRTKISKRKSHTSLEWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFVAAFSWERVSLGGPIFDLEKLRWMNGKYIREVLSLEEVAQRVKPFLEAAGFFWPSEAYLRRAVELMRPRIDTLKELPEKAPYLFTEDYPFSEKARAKLEEGLPVLKELLPLLKAQEDWGEAALEALLRNFAAQRGLKLGQVAQPLRAALTGSLETPGLFEIMALLGRERTLSRLERALS
>NZ_CP010822.1|WP_003048086.1|554460_555189_+|LPS-export-ABC-transporter-ATP-binding-protein
MDGELVAQGLRKRYGPKEVVKGVDLHLKRGEIVALFGPNGAGKTTTFYMVVGFIRPTGGRIFLKGQEIGRLPMYKRARMGLGYLPQEPSAFRRMTVLENLLAILEFQPLSQRERLEKAKALLEELAIYHLKDRMAYALSGGERRRLEIARALCTDPDFILLDEPFTGVDPKNVREIQKVIAELRERRGVGVFVTDHAVRETLAITDRVYVMYDGEILFHGDPETFAKDQGVRRHYLGEDYEL
>NZ_CP010822.1|WP_003048087.1|555189_556578_+|DUF3084-domain-containing-protein
MTFWALLVLILLLSALVAYLGDRVAKWAGKRHFRFLGLRPRQTATLVAVMTGVGIALFSYLGFLLVFREARETILEAQAIREERDRLKGEREALLRAKEAMEAEAARALSELNALRAERKELLKALEEAEALKGRLMAEARGLQAQVAALGKEKARLEEEKTRLAALLSEKEAPLAEKERALAERTEALKALEEALRRTAAEKKRLEGEKGRLEADIALLQARLEEARRERQGLEEELSALRGRLAEAQRSLAQAEERVRGLLRQAEALAGERGQLSERLLRLSQGLYLGEVRLGAEEGRATLERVAERWALLQGFRGAELLEGEVRGPGLAVLEGAGYRDGRLLVRFRFYPEKKAFAAGEVLASATFRLSTQARHQEVLERLGEEARRRLLEAGFPPEYATFPSPEELARGLALLQGRKGVVRLGVVAAKDLWTTERPLLAYQLLGGPPGPEVPLPTQKVP
>NZ_CP010822.1|WP_003048088.1|556524_557343_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MIRLLRELERELEGAGLPKGEALDLLALAAGLPRKALLLRLSEPPPPGAEARARELLKRRLSGYPLQYLLGEVEFFGLPLKVAEGVLIPRPETEGLVELALSLPLPPRPRVLDVGTGTGAIALALKRHLPEAEVHATEVDPRALALAEENARRLGLPVHFLKAPLTGGLRGLDLIVSNPPYLPEAYREVAPKELAFENPLALYAGPEGLDVARPLAGEAWEALRPGGFLLLELAPENVGLMAEELGAMGFQEVAVLRDLLGRERYLRARRPP
>NZ_CP010822.1|WP_003048089.1|557305_557893_-|KH-domain-containing-protein
MDEKKKSIDELLSDLGVLEEAPVEVELKESGKESQTKGPKEVLEEFLVGLLLRLDPAHYVEVRQEGNLLRAEVKGGDLGRFIGKEGRTLKAVEYLAGVVLAKHFGGAYRVVLDAAGYRKRQEDKIRRLAEEAALTVELTGEPLPLPPMRPSERRIVHMLLKNHPKVTTESHGEGEERHVVVYPRDKAPPGTGEGA
>NZ_CP010822.1|WP_003048090.1|557902_559195_-|membrane-protein-insertase-YidC
MRRLIALALLLLPALALEAGFKDVDVNGDGVPEKVAVTNLMDLAFDQKGQVVGWYVKTYKGTAIGDYAKAPNLRANGPVVSPAGFTPTKAEFLVEDGRLLARFQGPEGTLTYEIAKGRYTVGVRADFPLNLRLSAQGAPRVLLEGQGEPLPSGEGQFRYLAWQTRPKAGYALVAFGEGPLEGKLVGKEGEVRLPPGREVKVYGGQNELVRFHVEGLLALPGLFTPNLWGQLSLGLLWLMEMAFRYTGSWGLAILFLTLVVRLLLWPLMHQQFKSMAEMQRLQPLIQKINEKYKDDPNKRAEATMKLYQEHKVNPAAGCLPLFIQMPILFILWKVIANYEFGQGLLWIPDLALPDPYYILPVLYVASTLLSTWLSAHGNKDIIRQGLFINLIFVFLVLQFPAGVTLYWVLSNLIGLFQQWLINKSLKPLAA
>NZ_CP010822.1|WP_003048091.1|559191_559440_-|membrane-protein-insertion-efficiency-factor-YidD
MRGLLILLVKAYRRFISPLKPRTCRFHPTCSAYALEALERHGALLGSYLAARRLLRCHPLHPGGLDPVPPVFPPKKAKEGLR

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Crispr_ID: NZ_CP010822_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010822_5

869567-871070

TypeI-B

Consensus_repeat	Method
CTTTTGACCGTACCTATGAGGGTTTGAAAC	PILER-CR
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CRISPRCasFinder
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CRT

22 spacers

cas1,cas4,cas3,cas6,cas8b1,cas7,cas5,cas2

The CRISPR arrays of NZ_CP010822_5

>merge|NZ_CP010822|5|869567-871070|PILER-CR,CRISPRCasFinder,CRT
CTTTTGACCGTACCTATGAGGGTTTGAAACCGCCGTGTCCCTGAATGGGGTAAGCTACTCATGCCTCCTTTTGACCGTACCTATGAGGGTTTGAAACACGGCACCCCGCCCTGGCCAAGGCCTGGCCTCGGGGCTTTTGACCGTACCTATGAGGGTTTGAAACTGCCGCACCTGGCGGGCATAGGCCCGCCAGACACCGGCTTTTGACCGTACCTATGAGGGTTTGAAACGCGCTATCCTGGACGCTGAGGTGAAGCCGGTTCCTCCTTTTGACCGTACCTATGAGGGTTTGAAACGCCATGACCGGGTCGCTCGCCCTCCTTGGGAGGCCTCTTTTGACCGTACCTATGAGGGTTTGAAACGGCGGCGGGAAGCCTCCCTCCCCATGGTCAAAGACCAGCTTTTGACCGTACCTATGAGGGTTTGAAACGTCTTCTCCCTCCCCTCCCTCTCCGGCCTCCTGGTCCTTTTGACCGTACCTATGAGGGTTTGAAACCCCACCACCCGCCGCGGGCGCCCGACTCCCCTCCGCTTTTGACCGTACCTATGAGGGTTTGAAACGCCATAGGCCTGCTCCTTCCTGTCCTGGCCAAGGGCGGCTTTTGACCGTACCTATGAGGGTTTGAAACGCATAGCTCATAGCTAAATGCTAAGGCAAAAGCTTTCCTTTTGACCGTACCTATGAGGGTTTGAAACGCCGAGGTGAAGGCCGAGTTCATGGGGAGGGTTCCCGCTTTTGACCGTACCTATGAGGGTTTGAAACCCTCAGACCAGGCCACCCACCACACCCTCACCTTCCGCTTTTGACCGTACCTATGAGGGTTTGAAACGCTCCGAGCGGCGGGGTACGAAGCCCATATCTGGGAGTCTTTTGACCGTACCTATGAGGGTTTGAAACACCAAAAACCAATAGGCCGTCTCCCGGTCTACCTCCCCTTTTGACCGTACCTATGAGGGTTTGAAACGTGGCCAAAAAGGCCAGCAGAGCCAGGGCCAGGACGTACTTTTGACCGTACCTATGAGGGTTTGAAACGACTCCTGAGCTGGTGGAGGTGGCCAGGACCGCCTACCTTTTGACCGTACCTATGAGGGTTTGAAACGCGGGGGGCGTGGGGGGGGGTGAGGGCCGCCCAACATGCTTTTGACCGTACCTATGAGGGTTTGAAACCTCCTGCCTGCGGGTGAGGCCGTCCCCATCTACCTGGAGGCTTTTGACCGTACCTATGAGGGTTTGAAACCGGACTCCACCGGTAACCTCGGGACCGACACCCCACCTTTTGACCGTACCTATGAGGGTTTGAAACAAGTAAGGGAGCTTTTCAGCACTCTCTCCCGCATGTTCCTTTTGACCGTACCTATGAGGGTTTGAAACGGGGTACAGGGGGCCGCCAGGCCCCCTGTCTGCGACTTTTGACCGTACCTATGAGGGTTTGAAACGGAGGCCCCGGGAACTGGGAGGCCCGCACCACGAGGCCTTTTGACCGTACCTGTGAGGGTTTGAAAC

>NZ_CP010822|5|3|869567-871070|PILER-CR
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CGCCGTGTCCCTGAATGGGGTAAGCTACTCATGCCTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	ACGGCACCCCGCCCTGGCCAAGGCCTGGCCTCGGGG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	TGCCGCACCTGGCGGGCATAGGCCCGCCAGACACCGG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCGCTATCCTGGACGCTGAGGTGAAGCCGGTTCCTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCCATGACCGGGTCGCTCGCCCTCCTTGGGAGGCCT
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GGCGGCGGGAAGCCTCCCTCCCCATGGTCAAAGACCAG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GTCTTCTCCCTCCCCTCCCTCTCCGGCCTCCTGGTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CCCACCACCCGCCGCGGGCGCCCGACTCCCCTCCG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCCATAGGCCTGCTCCTTCCTGTCCTGGCCAAGGGCGG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCATAGCTCATAGCTAAATGCTAAGGCAAAAGCTTTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCCGAGGTGAAGGCCGAGTTCATGGGGAGGGTTCCCG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CCTCAGACCAGGCCACCCACCACACCCTCACCTTCCG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCTCCGAGCGGCGGGGTACGAAGCCCATATCTGGGAGT
CTTTTGACCGTACCTATGAGGGTTTGAAAC	ACCAAAAACCAATAGGCCGTCTCCCGGTCTACCTCCC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GTGGCCAAAAAGGCCAGCAGAGCCAGGGCCAGGACGTA
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GACTCCTGAGCTGGTGGAGGTGGCCAGGACCGCCTAC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCGGGGGGCGTGGGGGGGGGTGAGGGCCGCCCAACATG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CTCCTGCCTGCGGGTGAGGCCGTCCCCATCTACCTGGAGG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CGGACTCCACCGGTAACCTCGGGACCGACACCCCAC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	AAGTAAGGGAGCTTTTCAGCACTCTCTCCCGCATGTTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GGGGTACAGGGGGCCGCCAGGCCCCCTGTCTGCGA
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GGAGGCCCCGGGAACTGGGAGGCCCGCACCACGAGGC
CTTTTGACCGTACCTGTGAGGGTTTGAAAC

>NZ_CP010822|5|5|869567-871070|CRISPRCasFinder
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CGCCGTGTCCCTGAATGGGGTAAGCTACTCATGCCTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	ACGGCACCCCGCCCTGGCCAAGGCCTGGCCTCGGGG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	TGCCGCACCTGGCGGGCATAGGCCCGCCAGACACCGG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCGCTATCCTGGACGCTGAGGTGAAGCCGGTTCCTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCCATGACCGGGTCGCTCGCCCTCCTTGGGAGGCCT
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GGCGGCGGGAAGCCTCCCTCCCCATGGTCAAAGACCAG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GTCTTCTCCCTCCCCTCCCTCTCCGGCCTCCTGGTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CCCACCACCCGCCGCGGGCGCCCGACTCCCCTCCG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCCATAGGCCTGCTCCTTCCTGTCCTGGCCAAGGGCGG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCATAGCTCATAGCTAAATGCTAAGGCAAAAGCTTTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCCGAGGTGAAGGCCGAGTTCATGGGGAGGGTTCCCG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CCTCAGACCAGGCCACCCACCACACCCTCACCTTCCG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCTCCGAGCGGCGGGGTACGAAGCCCATATCTGGGAGT
CTTTTGACCGTACCTATGAGGGTTTGAAAC	ACCAAAAACCAATAGGCCGTCTCCCGGTCTACCTCCC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GTGGCCAAAAAGGCCAGCAGAGCCAGGGCCAGGACGTA
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GACTCCTGAGCTGGTGGAGGTGGCCAGGACCGCCTAC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCGGGGGGCGTGGGGGGGGGTGAGGGCCGCCCAACATG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CTCCTGCCTGCGGGTGAGGCCGTCCCCATCTACCTGGAGG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CGGACTCCACCGGTAACCTCGGGACCGACACCCCAC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	AAGTAAGGGAGCTTTTCAGCACTCTCTCCCGCATGTTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GGGGTACAGGGGGCCGCCAGGCCCCCTGTCTGCGA
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GGAGGCCCCGGGAACTGGGAGGCCCGCACCACGAGGC
CTTTTGACCGTACCTGTGAGGGTTTGAAAC

>NZ_CP010822|5|3|869567-871070|CRT
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CGCCGTGTCCCTGAATGGGGTAAGCTACTCATGCCTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	ACGGCACCCCGCCCTGGCCAAGGCCTGGCCTCGGGG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	TGCCGCACCTGGCGGGCATAGGCCCGCCAGACACCGG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCGCTATCCTGGACGCTGAGGTGAAGCCGGTTCCTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCCATGACCGGGTCGCTCGCCCTCCTTGGGAGGCCT
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GGCGGCGGGAAGCCTCCCTCCCCATGGTCAAAGACCAG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GTCTTCTCCCTCCCCTCCCTCTCCGGCCTCCTGGTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CCCACCACCCGCCGCGGGCGCCCGACTCCCCTCCG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCCATAGGCCTGCTCCTTCCTGTCCTGGCCAAGGGCGG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCATAGCTCATAGCTAAATGCTAAGGCAAAAGCTTTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCCGAGGTGAAGGCCGAGTTCATGGGGAGGGTTCCCG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CCTCAGACCAGGCCACCCACCACACCCTCACCTTCCG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCTCCGAGCGGCGGGGTACGAAGCCCATATCTGGGAGT
CTTTTGACCGTACCTATGAGGGTTTGAAAC	ACCAAAAACCAATAGGCCGTCTCCCGGTCTACCTCCC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GTGGCCAAAAAGGCCAGCAGAGCCAGGGCCAGGACGTA
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GACTCCTGAGCTGGTGGAGGTGGCCAGGACCGCCTAC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GCGGGGGGCGTGGGGGGGGGTGAGGGCCGCCCAACATG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CTCCTGCCTGCGGGTGAGGCCGTCCCCATCTACCTGGAGG
CTTTTGACCGTACCTATGAGGGTTTGAAAC	CGGACTCCACCGGTAACCTCGGGACCGACACCCCAC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	AAGTAAGGGAGCTTTTCAGCACTCTCTCCCGCATGTTC
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GGGGTACAGGGGGCCGCCAGGCCCCCTGTCTGCGA
CTTTTGACCGTACCTATGAGGGTTTGAAAC	GGAGGCCCCGGGAACTGGGAGGCCCGCACCACGAGGC
CTTTTGACCGTACCTGTGAGGGTTTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010822.1\|WP_040684250.1\|861103_861364_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_CP010822.1\|WP_003045454.1\|864888_865617_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
NZ_CP010822.1\|WP_155982872.1\|874002_874515_+\|phenylacetate-CoA-oxygenase-subunit-PaaJ	unknown	unknown	gnl\|CDD\|131214
NZ_CP010822.1\|WP_003045458.1\|867882_868404_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP010822.1\|WP_081453648.1\|861367_862093_-\|CRISPR-associated-protein-Cas5	cas5	mkCas0191_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP010822.1\|WP_003045438.1\|857948_858890_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|234698
NZ_CP010822.1\|WP_003045478.1\|878819_879188_-\|hydroxyphenylacetyl-CoA-thioesterase-PaaI	unknown	unknown	gnl\|CDD\|131339
NZ_CP010822.1\|WP_003045464.1\|871812_872784_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	unknown	unknown	gnl\|CDD\|184320
NZ_CP010822.1\|WP_003045440.1\|859046_859469_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NZ_CP010822.1\|WP_003045462.1\|871241_871826_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380061
NZ_CP010822.1\|WP_155982878.1\|863038_864847_-\|hypothetical-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	gnl\|CDD\|187861
NZ_CP010822.1\|WP_003045456.1\|865657_867907_+\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP010822.1\|WP_003045465.1\|872793_873315_+\|phenylacetic-acid-degradation-protein	unknown	unknown	gnl\|CDD\|368813
NZ_CP010822.1\|WP_003045460.1\|868396_869380_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP010822.1\|WP_003045469.1\|874523_876515_+\|phenylacetic-acid-degradation-bifunctional-protein-PaaZ	unknown	unknown	gnl\|CDD\|236931
NZ_CP010822.1\|WP_003045466.1\|873307_874066_+\|phenylacetate-CoA-oxygenase-subunit-PaaC	unknown	unknown	gnl\|CDD\|131213
NZ_CP010822.1\|WP_003045474.1\|877020_877482_-\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|227783
NZ_CP010822.1\|WP_003045476.1\|877485_878823_-\|phenylacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|341239
NZ_CP010822.1\|WP_155982877.1\|862089_863046_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	gnl\|CDD\|377458
NZ_CP010822.1\|WP_003045472.1\|876486_877005_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379658

Protein	Function_ID	Function_description	E-value
NZ_CP010822.1\|WP_040684250.1\|861103_861364_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.02249e-26
NZ_CP010822.1\|WP_003045454.1\|864888_865617_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	3.96327e-28
NZ_CP010822.1\|WP_155982872.1\|874002_874515_+\|phenylacetate-CoA-oxygenase-subunit-PaaJ	gnl\|CDD\|131214	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	2.44359e-48
NZ_CP010822.1\|WP_003045458.1\|867882_868404_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.14944e-66
NZ_CP010822.1\|WP_081453648.1\|861367_862093_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	6.17672e-17
NZ_CP010822.1\|WP_003045438.1\|857948_858890_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	2.31458e-61
NZ_CP010822.1\|WP_003045478.1\|878819_879188_-\|hydroxyphenylacetyl-CoA-thioesterase-PaaI	gnl\|CDD\|131339	TIGR02286, Acyl-coenzyme_A_thioesterase_PaaI, phenylacetic acid degradation protein PaaD. This member of the domain family TIGR00369 (which is, in turn, a member of the pfam03061 thioesterase superfamily) is nearly always found adjacent to other genes of the phenylacetic acid degradation pathway. Its function is currently unknown, but a role as a thioesterase is not inconsistent with the proposed overall pathway. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.	2.08781e-41
NZ_CP010822.1\|WP_003045464.1\|871812_872784_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	gnl\|CDD\|184320	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional.	0
NZ_CP010822.1\|WP_003045440.1\|859046_859469_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	7.48308e-26
NZ_CP010822.1\|WP_003045462.1\|871241_871826_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380061	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in family members such as HTH-type transcriptional repressor KstR2 as well as fatty acid metabolism regulator proteins. In Mycobacterium smegmatis, KstR2 is involved in involved in cholesterol catabolism, while YsiA in Bacillus subtilis is involved in fatty acid degradation.	2.32215e-42
NZ_CP010822.1\|WP_155982878.1\|863038_864847_-\|hypothetical-protein	gnl\|CDD\|187861	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as TM1802 family.	1.07025e-49
NZ_CP010822.1\|WP_003045456.1\|865657_867907_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.82967e-45
NZ_CP010822.1\|WP_003045465.1\|872793_873315_+\|phenylacetic-acid-degradation-protein	gnl\|CDD\|368813	pfam06243, PaaB, Phenylacetic acid degradation B. Phenylacetic acid degradation protein B (PaaB) is thought to be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation.	2.82428e-22
NZ_CP010822.1\|WP_003045460.1\|868396_869380_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.52886e-158
NZ_CP010822.1\|WP_003045469.1\|874523_876515_+\|phenylacetic-acid-degradation-bifunctional-protein-PaaZ	gnl\|CDD\|236931	PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional.	0
NZ_CP010822.1\|WP_003045466.1\|873307_874066_+\|phenylacetate-CoA-oxygenase-subunit-PaaC	gnl\|CDD\|131213	TIGR02158, 12-phenylacetyl-CoA_epoxidase_subunit_C, phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	4.80305e-89
NZ_CP010822.1\|WP_003045474.1\|877020_877482_-\|thioesterase-family-protein	gnl\|CDD\|227783	COG5496, COG5496, Predicted thioesterase [General function prediction only].	1.48459e-31
NZ_CP010822.1\|WP_003045476.1\|877485_878823_-\|phenylacetate--CoA-ligase	gnl\|CDD\|341239	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK). PaaK catalyzes the first step in the aromatic degradation pathway, by converting phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has been found in proteobacteria as well as gram positive prokaryotes. The enzyme is specifically induced after aerobic growth in a chemically defined medium containing PA or phenylalanine (Phe) as the sole carbon source. PaaKs are members of the adenylate-forming enzyme (AFE) family. However, sequence comparison reveals divergent features of PaaK with respect to the superfamily, including a novel N-terminal sequence.	0
NZ_CP010822.1\|WP_155982877.1\|862089_863046_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.0092e-58
NZ_CP010822.1\|WP_003045472.1\|876486_877005_-\|hypothetical-protein	gnl\|CDD\|379658	pfam14595, Thioredoxin_9, Thioredoxin.	2.3736e-19

>NZ_CP010822.1|WP_003045460.1|868396_869380_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MAKPVYVFSSGRLSRLANTLVLEREDGKRHLPVEQVSELYLFGEVELNKRFLEFAAQKGILLHFFNRFGYYVGSFYPREHLLSGYLTLRQAEHYLDSAKRLDLARRFVEGGLVNILSLLRKEEARGNNLEPVLELLEELLARTGEAQSVGELMALEGRAREAYYRTWEALLGEDWALERSRRPPRDPINALLSFANTLLYTAVLAQIYQTHLDPRIGFLHEANYRRHSLNLDVAEVFKPVLADRLVFRLVRRGQVKPGHFMREGEGVFLSEAGRRLVVEEWEKTLQTTYRHRALKRAVSYRTTLRLELYKLEKHLIGEQPYTPYRLR
>NZ_CP010822.1|WP_003045458.1|867882_868404_+|CRISPR-associated-protein-Cas4
MGDGAVPLTGTLFWYFGVCPREAWLMGHALEPFPDHELLALGRLLQETSYPRGRKEVALPGMRLDLLEGKGGTLVVAEVKRSSGQKEAHLLQLGFYLLRLREMGLEVQGELRYPEERRVERVALTPELEAKVREAEEALRALLAKPTPPPPKRIPACSGCAYFELCFVEEVDG
>NZ_CP010822.1|WP_003045456.1|865657_867907_+|CRISPR-associated-endonuclease-Cas3''
MNLLARVNPEEPLSEHLLGVGQLSEGFLAPLGLGLQGRLAGLCHDLGKATPYFQDMLQGKRRKGDPLTWHALPGALFAAWTARRWGLEGDALFLFLAVLEHHGSLSSPWERLPPDLAEGRRPRKGAWDVLPQQLKALDTEAFRALTASLGLPDPGPFLEGEAWEEAERLALEAETLLHQEGRELRDHFRLALLYSALLDADRRLAGQTPPSRPRPIPPGAVEAHLEAKRASGPLGPHRKALFQGVARALEAPLERLFPARLTLTAPTGAGKTLAALRFALGLRERVAKERGYLPKVVYALPYIAIADQVEEEARGVLARAGLDPEAHLLVHHHLALARLREEEAVEEVMALQETWDRDVVVTTFHQVFPALVGPGSGLRPLHALAEGAILILDEVQALPAELWPLLRALLRELPGRVTVVSMTATQPRLVEGEEIAPKLPDYPARVRLAWGEARTLEALAERLLEEPPRPRLVVLNTVREAVDLYRRLRQEGLPHLHLLTSHLMPKHRKARLEAIRKALAAGVPLTLVATQVVEAGVDLDFQEGYRAFAPLESLLQTAGRVNRNALGEGRLWVLDLEGESGKKIYGEVLLDRTRRLLGDLLEGGLEDREAYRLLPEYYRLVEEGISQAKGQKALKALAALDYDRLEGFRLLEEAPSLPIFVEWDEEATQLLRRLEEAFAQKDPKERRKSLRLLLPRLQAYTVSPLLRRALKNLPPPLLGREDWRHVPREAVGDFYDEEVGFLWEMEQFL
>NZ_CP010822.1|WP_003045454.1|864888_865617_-|CRISPR-associated-endoribonuclease-Cas6
MGPIKGGRLKLRLYAEGHLPVTYREGLQAALYRALPSPLGETLHERGLVSGERPLKLFVFSRLLGLRYLPEAKAFAAEGELTLYFASALEEVLSGLVRGLWERGGLEVHGLPLRLLGLELEPLPPGGRVVVEALAPITVYRTEGGATRYFNPLNREFGLLLEANLRRKAEALGLEAGPFQVRPLGFRPQHKRLERYKGTWVEGWMGRFRLEGPPHLVRLALLSGLGAKNSQGFGFVREVGGC
>NZ_CP010822.1|WP_155982878.1|863038_864847_-|hypothetical-protein
MEAHVLQATGRFYLLDLYPKAREARLVPYGLGPEQCRRFLWVGDPPASNAPRDRATTRKLTYLLGQVPTRLAEDPGLKPLLQGLLLDPGRPGGKARFLLDLRGYRLVGAKDAEAQPFRVRGERLEVTEDLGKWKAGDLAEALAEVLKRAWGVAPPKGGEEVLFSLALEGRPLADFPEYRDYLKRLLTGERRFAQGSQGLCHACGRAGVPVAQSFADFKLKFYITDKKGFAPGVREEAFAKAYALCPDCFRALKLGEGFALENLKLRFLETEALVLPGAALEPERLSRLVERVLAQVHGLERLSAWRDFLARAKREEGVGYLGFTLLFFREAQAATKAKGVVLEVPPSRVEALFRAMEEAGVEGVRDWLYLLPLDRGQRGVEAGLALEAASRLFLGLPFLSRDWVPLFLRAAERAFREDATLFATSRFRGPGGALGLVTLAADWLAILVRMGVWGGTMGEKDLSGALLEEEEKRAFQAYNFGPLEAGLYLLGKAMEAVGQAQARLYQYRKEPLLEAIGWQGMSLVRVRHLVPEVMAKAAYYLEGEDRTRVLDLLGRATDLLERAEGGLSDREVPYYILMGYAQARSQRLRGGRREVAHEGEDA
>NZ_CP010822.1|WP_155982877.1|862089_863046_-|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MPNAEILFLYEAKDTNPNGDPDAENRPRMDYVGRRLLVSDVRLKRYVRDYLLARGEDVWVRTREDGSRTDADGRLEELKDLYKKETGKELGAKKKDLDPEFLAWYLRRLRDVRLFGAVLPIKAEGEAKGGTGQFVGPVQFDWGYSLHPVEVYAATIASQFAGRTEGGKGEHGTFGKDHRVHYALIAFWGRVSALRAERVGLSLKDLEVLERGLLEGLLEGATTRSKVGQTPLLYLRVDWRGGFRPLGDPRDGLRVRPEGGKAPEAIRSQADYVLEAGGLSERLARYREEVERVRLWRHPGLKVEGLSLEGVRVEEVSF
>NZ_CP010822.1|WP_081453648.1|861367_862093_-|CRISPR-associated-protein-Cas5
MTVLRFVLKGKRAHFRRFYTNSSALTYPVPPPSTLLGLLGAARGLGPEFAEVLSGIYLSVRPLGGQRQLFQAVNYLFLKEGTLSELRGLYKDGRTQIPLQFLVGEEGGPVAYEVYVASRDAGLMGDLARALEAPAYPLSLGPAFALGWAEAVTLARGEVVEGWEGKGIGWWQADRLRLKELLPEVRLYRDRFPVALSPDRNPRRVEELALEIGGKPLAVAYEGPVLRVDGLEGCAVGVVRV
>NZ_CP010822.1|WP_040684250.1|861103_861364_-|CRISPR-associated-endonuclease-Cas2
MYVVMVYDVAVERVAKVLKVGRRYLTWVQNSVLEGELSPARFARLKAEVAKVIESSDAVRFYVLPDKGALRVEVLGTSKNEPSQFI
>NZ_CP010822.1|WP_003045440.1|859046_859469_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MRPPKRLLLDTNFFIALRRGEPEAYRFLARLSEEQLVTSAIVQVEYATGEFVVDPRRERSVEAMFARFAVLPFEGKAARKAMREAAKLNLPKLPNPHKKLFDLMIAATAWAHNRTLLTENIGDFAAFTWVKVANWRDYGR
>NZ_CP010822.1|WP_003045438.1|857948_858890_-|tyrosine-type-recombinase/integrase
MYNAPMAEPTTQGVIWKTIGVKKPEKGLLPLAPYAEYLLLERGYSPRGVRRYLQDLALWFRFLEARALPPGPEAVRAILLEERWAPRRVQGFLAALRSYYRYLAQVRGEAVADPTEGIGRPKAGRRLPLHPAPEELLRFLEALAQEKEARLLTALARFLYGTGLRISEALSLKGKNIVQEGGRPVAVRVVGKGNKERLVPLSRTAQSALLELGPPQGNVNVFTFAQGRYRGRVPSARYVEAKFREAALRAGLDPRRFTPHKLRHAYATFLVERGVQLDAVKDLLGHESIATTQIYLHASRERLKEAASRLPDL
>NZ_CP010822.1|WP_003045462.1|871241_871826_+|TetR/AcrR-family-transcriptional-regulator
MDRRSQILQMAGHLFSQRGYHATSIRDLAKALNLQGGSLYAHIASKEELLLEVVRQAAARFQEVLNSLPQAGPKEKMVALVKGHLRVIAEELPRATVFFHEWKHLSPPLLKEAKALRDRYEEGVQRVIAEGVEKGVFRVANLRLATLFVLSALNWTYQWYRPEGPMSLEELAEAYAQMVLKALGAEEGGEDGEA
>NZ_CP010822.1|WP_003045464.1|871812_872784_+|1,2-phenylacetyl-CoA-epoxidase-subunit-A
MVRLRIGYPEDPDYQERLEEFEARIARGEKIEPGDWMPAEYRRQLIRMISQHAHSEWVGMLPEGAWITRAPSLRRKLILLAKVQDEAGHGQYLYHAAETLGITREEMVEALLSGKAKYSNIFNYPTLTWADVGIIGWLVDGMAIKNQTMLAQCSYGPYSRAMVRICAEETFHHKQGKEAVLLYARGSRKQRQMVQDALNRWWWPTLMMAGPHDSESPHTPLLLRWGIKTKTNDQIRQEFLNEHIPELLEAGLSIPDPDLRYDEKTGNWIHGPIPWDEFWKVIGGEGPMNRHRLEARRRAHEEGRWVREALEAHAKRRLAQAAD
>NZ_CP010822.1|WP_003045465.1|872793_873315_+|phenylacetic-acid-degradation-protein
MWGTEWPRWEVIKQDTEKSPPQMVGSVHATDPEHALLVARHVFVRRPSAYALFVAPAEAFFHVTREALKDPKALEVPEGEEEAYWVFAKRSHRRSMVYGDLVGRFLAKSPGEAVKEALLQTQGVAFWAVPERVIVGTEPKAEVIESWFAPAKDKTYRLQSYYGLITAKEVEDA
>NZ_CP010822.1|WP_003045466.1|873307_874066_+|phenylacetate-CoA-oxygenase-subunit-PaaC
MLDPYLKEALVGKLTALADDEVVLAQRLSEWVAHAPILEEDIAIANLAQDELGHAKLYLELRQELDGSDPDQVVFLRDPLDYGNAVLVELPRGDWAFTMVRQYLFDAYEGLWLREAASSRYAPLAEVAARILKEERFHLRHSSLWVERLALGTEESHRRAQAALDLLFPYARQLFRPLEGEEALVEAGIVPDLKALEGPYLEEVGSFLKGVGLKVPEGGYVPKSRREHTEYLWSLLAEMQSVARWDREAKAW
>NZ_CP010822.1|WP_155982872.1|874002_874515_+|phenylacetate-CoA-oxygenase-subunit-PaaJ
MVPSGRDAVRGPLGPGGQGVVERYFEALKGVKDPEIPVLNIVEMGMVLGLEAEGDRVRVRFRPTFSGCPALALIREEIRRALEEAGAKEVEVVEERTPWTTEAITEEAKEKLRAYGVAPPLPLPMAHRDPPCPRCGSRRVALKNPFGATLCKMLYQCQACGEVFEAFKTV
>NZ_CP010822.1|WP_003045469.1|874523_876515_+|phenylacetic-acid-degradation-bifunctional-protein-PaaZ
MRKLQSYLMGAWHEGAGEGVAIRDAVTGEELYRVTSEGLPLKEAVAWGREVGGKALLALGFQERGRRLRALAQHLSERKEELYRLYATTGGTRRDAWYDVDGGIGVLFAYSSLARSLPEGNLLPEDEYIPLSKDLSFQGRHALVPKGGITLQINAFNFPVWGLLEKFAPAFLAGVPTLAKPATPTAHVAEGLVRLMLDSGLLPEGSLQFVAGGLGEALEALDHRDSVYFTGSKATADRLRLHPAFQRGALFNAETDSLNAAVLGEEAGEEELERLAEEIAQELAIKTGQRCTAIRRVLAPEKKLTALLEATQARLAPLRLGDPREEGVDLGPLASLAQKEEVERAVAALLQAGARVYWAHPGRRDGAFFPPTLLLAEDPWAEALHRIEPFGPVATFFPYRTKEEALRLARLGGGMLAATLATPDPGEARFFLLGLGGEVGRLHLLNRRDAKTSTGHGSPLPRLLHGGPGRAGGGLELGGLLSVKAHLARVALQGDPETLQALLLEYAKGAERPAEVHPFRKYYEELQVGETLITHRRTVTEADIALFSALSWDHFYAHTDELAARESLFGKRVAHGYFVLSAAAGLFVDPAPGPVLANYGLEGLRFTEPVAAGDTIQARLTVKGKRPRDEKSGVVEWAVEVQNQEGKVVAAYTILTLVARKPS
>NZ_CP010822.1|WP_003045472.1|876486_877005_-|hypothetical-protein
MAPDLQTRLIQGMTFAQLLERSRHASLLLAFLEAAPPEPLPEEVAWVLALVEDWCPDCHQAAPVLAKAAGERVRFFFRDENPDLREAYKLGEKRIVPTLVFLDRELKELARWHGPPEEARAFFRARLAEGAPASREEKRALLAAYHRAFPRMAKAIREEWARLLRRASGPPG
>NZ_CP010822.1|WP_003045474.1|877020_877482_-|thioesterase-family-protein
MRPIPIGYEAVFETVVTEAMTVDFEELGPVHPVYATYWMAKHMELAGRKIILPFLEEGEEGIGSYVEVRHLASALPGMRVRIIARHERTEGNRVHAVMEAYNELGDLLGRGRTEQVILPKAKVEALFARLRARWEAFRQGAVSGDEKRKPEES
>NZ_CP010822.1|WP_003045476.1|877485_878823_-|phenylacetate--CoA-ligase
MIFQPELETLSRERLEKLQDERLRFVVGYVYERVPFYRQRLDEAGVDPKAFGGLKDLHKLPFTRKDHLRENYPFGLFAVPREEVARIHASSGTTGKPTVVGYTKKDLQVFAEVVARSLAAAGARPGMMLHNAYGYGLFTGGLGLHGGAEALGMTVVPVSGGMTERQVMLIQDFRPEVISCTPSYAQTLAEAFRKRGVSPEDLSLEYAVLGAEPWTEAIRKQVDEGLGVRSTNIYGLSEIIGPGVANECVEERQGSHIWEDHFLPEVVDPDTGEPLPEGKVGVLVLTNLTKEAMPLLRYWTGDLTFLTYEPCACGRTHVRMGPILGRTDDMLIIRGVNVYPTQVEAVLLGIPEVVPYYQIVVRREGTLDEAELKVEVSEDFFREIGEKALSDEVIEADHRLHALKEKVAHKIKDTIGVSMRVTLLAPGQAPRSEGGKLRRVLDLRK
>NZ_CP010822.1|WP_003045478.1|878819_879188_-|hydroxyphenylacetyl-CoA-thioesterase-PaaI
MKDPFMAHLGFAVLHLAPGEAVVAGEVGEAHLNLHGTAHGGFLYALADSAFALASNSRGPAVALSCRMDYFRPLALGARVEARAKEVNLSRRTATYEVEVVAEGKKVALFIGTVFRLGGEAA

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Crispr_ID: NZ_CP010822_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010822_6

1009153-1009266

Orphan

III-A

Consensus_repeat	Method
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010822_6

>merge|NZ_CP010822|6|1009153-1009266|CRISPRCasFinder
GCCGCAATCCCCTTACGGGGCTAACTGGTTAGCAACGGAAGATTGAAGGCCTTTTGGACAAGGTGCTTGAGGATGCCGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACC

>NZ_CP010822|6|6|1009153-1009266|CRISPRCasFinder
GCCGCAATCCCCTTACGGGGCTAACTGGTTAGCAAC	GGAAGATTGAAGGCCTTTTGGACAAGGTGCTTGAGGATGCC
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010822.1\|WP_003045761.1\|1021094_1022285_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP010822.1\|WP_040684260.1\|1000341_1000560_-\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|379029
NZ_CP010822.1\|WP_003045721.1\|999847_1000342_-\|16S-rRNA-processing-protein-RimM	unknown	unknown	gnl\|CDD\|184352
NZ_CP010822.1\|WP_003045751.1\|1012673_1013420_-\|aminotransferase-class-IV	unknown	unknown	gnl\|CDD\|376449
NZ_CP010822.1\|WP_003045736.1\|1005141_1005681_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NZ_CP010822.1\|WP_003045730.1\|1002389_1003736_+\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_CP010822.1\|WP_003045725.1\|1000617_1000881_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NZ_CP010822.1\|WP_003045738.1\|1005754_1008328_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP010822.1\|WP_003045747.1\|1011494_1012160_+\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|224299
NZ_CP010822.1\|WP_003045745.1\|1011231_1011471_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003045755.1\|1015289_1015811_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP010822.1\|WP_003045732.1\|1003738_1004134_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223299
NZ_CP010822.1\|WP_003045740.1\|1008324_1009080_-\|YmdB-family-metallophosphoesterase	unknown	unknown	gnl\|CDD\|277328
NZ_CP010822.1\|WP_003045728.1\|1000888_1002181_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP010822.1\|WP_003045757.1\|1015891_1019449_-\|methionine-synthase	unknown	unknown	gnl\|CDD\|273959
NZ_CP010822.1\|WP_003045753.1\|1013416_1015267_-\|aminodeoxychorismate-components-I/II	unknown	unknown	gnl\|CDD\|223225
NZ_CP010822.1\|WP_003045743.1\|1009502_1010456_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP010822.1\|WP_003045759.1\|1019491_1021015_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NZ_CP010822.1\|WP_003045750.1\|1012146_1012617_-\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|273638
NZ_CP010822.1\|WP_003045735.1\|1004100_1005138_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666

Protein	Function_ID	Function_description	E-value
NZ_CP010822.1\|WP_003045761.1\|1021094_1022285_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_CP010822.1\|WP_040684260.1\|1000341_1000560_-\|KH-domain-containing-protein	gnl\|CDD\|379029	pfam13083, KH_4, KH domain.	1.7533e-17
NZ_CP010822.1\|WP_003045721.1\|999847_1000342_-\|16S-rRNA-processing-protein-RimM	gnl\|CDD\|184352	PRK13829, rimM, 16S rRNA-processing protein RimM; Provisional.	6.41251e-79
NZ_CP010822.1\|WP_003045751.1\|1012673_1013420_-\|aminotransferase-class-IV	gnl\|CDD\|376449	pfam01063, Aminotran_4, Amino-transferase class IV. The D-amino acid transferases (D-AAT) are required by bacteria to catalyze the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity.	4.1328e-42
NZ_CP010822.1\|WP_003045736.1\|1005141_1005681_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	6.4761e-56
NZ_CP010822.1\|WP_003045730.1\|1002389_1003736_+\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	2.91072e-145
NZ_CP010822.1\|WP_003045725.1\|1000617_1000881_-\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	6.15544e-39
NZ_CP010822.1\|WP_003045738.1\|1005754_1008328_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP010822.1\|WP_003045747.1\|1011494_1012160_+\|DNA-repair-protein-RecO	gnl\|CDD\|224299	COG1381, RecO, Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair].	3.28839e-13
NZ_CP010822.1\|WP_003045755.1\|1015289_1015811_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	6.39614e-24
NZ_CP010822.1\|WP_003045732.1\|1003738_1004134_+\|hypothetical-protein	gnl\|CDD\|223299	COG0221, Ppa, Inorganic pyrophosphatase [Energy production and conversion].	3.59198e-10
NZ_CP010822.1\|WP_003045740.1\|1008324_1009080_-\|YmdB-family-metallophosphoesterase	gnl\|CDD\|277328	cd07382, MPP_DR1281, Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.45539e-135
NZ_CP010822.1\|WP_003045728.1\|1000888_1002181_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP010822.1\|WP_003045757.1\|1015891_1019449_-\|methionine-synthase	gnl\|CDD\|273959	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase. This family represents 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), one of at least three different enzymes able to convert homocysteine to methionine by transferring a methyl group on to the sulfur atom. It is also called the vitamin B12(or cobalamine)-dependent methionine synthase. Other methionine synthases include 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP010822.1\|WP_003045753.1\|1013416_1015267_-\|aminodeoxychorismate-components-I/II	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	9.58535e-139
NZ_CP010822.1\|WP_003045743.1\|1009502_1010456_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	3.73713e-30
NZ_CP010822.1\|WP_003045759.1\|1019491_1021015_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NZ_CP010822.1\|WP_003045750.1\|1012146_1012617_-\|transcription-elongation-factor-GreA	gnl\|CDD\|273638	TIGR01462, Transcription_elongation_factor_GreA, transcription elongation factor GreA. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreA differs functionally in that it releases smaller oligonucleotides. Because members of the family outside the Proteobacteria resemble GreA more closely than GreB, the GreB clade (TIGR01461) forms a plausible outgroup and the remainder of the GreA/B family, included in this model, is designated GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein. [Transcription, Transcription factors].	1.60157e-60
NZ_CP010822.1\|WP_003045735.1\|1004100_1005138_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0

>NZ_CP010822.1|WP_003045740.1|1008324_1009080_-|YmdB-family-metallophosphoesterase
MRLLFIGDVMAEPGLRAVSLHLPDIRDRYDLVIANGENAAKGKGLDKRSYRLLREAGVDLISLGNHAWDHKEVYELLEKEPVVRALNYPPGTPGKGFWRLEAGESLLFVQVMGRIFMDPLDDPFRALDALLEREKADYVLVEVHAEATSEKMALAHYLDGRVSAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYQSIIGGEIETFLARFLTGRPQPFRAAEGKARLHATELVLEGGRPISISPYVWEEP
>NZ_CP010822.1|WP_003045738.1|1005754_1008328_-|phosphoenolpyruvate-carboxylase
MTEPFELLKAEVDLLGRLLGEAIRRVSGERFFALVEEVRLLAKARRQGDEGAGEALWKRVGTLSTEEAEALVRAFTHYFHLVNLAEERHRVRVNRMRAQAETPENPRPEGFLALAQALKGRGLSLEEAEAHLNRLELLLTFTAHPTETRRRTLRHHLEALQGELEEGERTRLEARVALLYATEEVRKARPSVEDEIKGGLYYLPTTLWRAIPKVVEGLETALERVYGKRPRLKSPVRFRSWIGGDRDGNPFVTPEVTRFAARYAREVAKEKVLEELGALVRDLSLSEAKVPVPREVRAGGEGVERFPGEPYRRFFAQIYRKVSQDEATTEELLSALKVAEGGLRAVGLEEVGKSFLRPLEARLSAFGLELAPLDLREESGKLLLAAAELLRLGGVHPDFLSLSPEAQEALLTEELKTARPLLPVGEEPQEEALRVALGALRAWRDKGAHVVSMTHHPADLLSVFLLAREVGLYRPGKPLPFDVVPLFETLEDLRRAPLVLRRLLENPVFLAHARGRGGVEVMIGYSDSNKDAGFLMANLALYEAQEALSRVGEERGLPVHFFHGRGTSTARGGGPAGRAIASLPPRSVGRRLRLTEQGEALADRYGHPDLAVRHLEQLLFHFAQAALGDGVEPKPHWREALSWAGERSMAHYRALLAEEGFFPFFEALTPIREIGELPIASRPVYRHGRVRDIGDLRAIPWVMAWTQVRLLLPGWYGLSTLEELPLELLREMYREWPFFATTLESAAMALAKADLGVARLYLRLVPEALHPLFHRIAEEYLRTQALLEAIFQAPLLHNQRTLERQIALRNPYVDPINIVQVELLRRYRAPGGREDEALRKALLLSILGVAAGLRNAG
>NZ_CP010822.1|WP_003045736.1|1005141_1005681_-|NYN-domain-containing-protein
MELLGHHQDQRVGVFVDTQNLYHSARDYYERNVNFESLLRFAVGGRRLVRATAYVVEKEGDTSAWPFIYKLSTIGYRVRRMYLTVKETGEGGRPIYEGNWDMGIAADMVRLMPYLDVVVLGSGDGDFVEILEVLMERGIRVEVIAFRETTAQRLIDAVDRFVHLPEIPNPFMEPKNPER
>NZ_CP010822.1|WP_003045735.1|1004100_1005138_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MAGLEAYDYHLPPERIAQEGVEPRDLARMMVVYREGPFRVAHRRVRDLPEFLRPGDLLVFNESKVIPARLLARKPTGGRVEVLLVQERAPGLWEALLGPARRAPVGTELFFLSPRDWRPVPGLKAEVVGVEADGVRLLQIQGDLLAHLEEVGEVPLPPYIKAQIPLERYQTVYAKRPGSVAAPTAGLHFTPELMERLRGMGVELHFLTLHVGPGTFRPVKGDPEKHAMHAEPYEIPEATALAVNRAKAEGRRVIAVGTTVVRALESAYREGEGVAAGAGETRLFIRPPYAFKVIDGLFTNFHLPRSTLLMLVAAFLGYERTMEAYRLAVEEGYRFYSLGDAMLIL
>NZ_CP010822.1|WP_003045732.1|1003738_1004134_+|hypothetical-protein
MRLRMIVEWTKGSPFRHAWKEGRLVPVGEDRPAPVNYGLIPGLLNPADGEEVDAVLLGPPHPLGEAEGEVVGLLHLEDGDHKVLLAPQDSPPDENVAPLLAWFAPERRPTLFPKEAALDFLQRISMASPRE
>NZ_CP010822.1|WP_003045730.1|1002389_1003736_+|magnesium-transporter
MEKILSPILKALEEGDTLSLKRLLEEAHPQDLLLIWDDLNREHRYVLLTLLPKEKAAEVFSNLPPEDQAEYLKTLPPWRVQELLEELSLDDLADALQAVEEEDPALARKLKEALDPETRAEVEELTQYEEDEAGGLMTPEYVAVRASMAVEDVLRFLRRAAPDAETIYYLYVVDEEGRLMGVLSLRDLIVADPRTKVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEEEATEDIHKLAAVDVPDLVYSQASPLQLWLARVRWLIILILTGMVTSSILQGFESVLEAVTALAFYVPVLLGTGGNTGNQSATLIIRALATRDLELKDWRKVLLKESLVGVLLGLTLALFLLLKVRLDGHPALLPVVGLALFLLVLFANLVGSMLPMVLRRFGVDPALVSNPLIATLSDVMGLLIYLSVARLILGI
>NZ_CP010822.1|WP_003045728.1|1000888_1002181_-|signal-recognition-particle-protein
MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKELSLEDFLKQMQNLKRLGPFSEILGLLPGVPQGLKVDEKAIKRLEAIVLSMTPEERKDPRILNGSRRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSLEKKKGRGLMGMFRR
>NZ_CP010822.1|WP_003045725.1|1000617_1000881_-|30S-ribosomal-protein-S16
MVKIRLSRFGSKHNPHYRIVVTDVRRKRDGAYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQETQGA
>NZ_CP010822.1|WP_040684260.1|1000341_1000560_-|KH-domain-containing-protein
MKDLVEYLAKSVVDRPEAIRVQERRGREGPVYLVEVAPEDKGRLIGKGGRVIESIRTLVRAYAKRKVGVEVR
>NZ_CP010822.1|WP_003045721.1|999847_1000342_-|16S-rRNA-processing-protein-RimM
MAGRLVEIGRFGAPYALAGGLKFRGEPVVAHLTRIYVEGHGWRAVEDLYQVGEELVVHLAGVSTRELAEALVGLRVYAEVADLPPLEEGQYYYFALIGLPVYVEGQKVGEVADILDAGAQDVLVIRGVGERLRDRAERLVPLQAPYVRVEAEGIHVEPIPGLFD
>NZ_CP010822.1|WP_003045743.1|1009502_1010456_+|IS110-family-transposase
MLCAGIDVSKPHLDLALVSTTAKPTRLRFPNTPEGRQALLAALAHHRPTWVALEPTGAYHLPLLQLLAEKGLQVALVNPYHLAAFRRATGERHKTDRQDALLLARYAQVYGESLRAYTLPPKALQELKALVGYREDLAQRARAILNQLEAARWAGSEEILVLLQRELACVEGLLGEVEARIQALLAALPEAEVLMGLPGVGPQVAAVVLALLPPHLWGRAKAAASYAGLIPEREESGKSVERSRLSRKGPPLLRRKLFMGALVVVRHDPEMGAFYHRLLSRGKRKKQALVAVAHKLLRRMMGRLREYYAGQSLQGVA
>NZ_CP010822.1|WP_003045745.1|1011231_1011471_-|hypothetical-protein
MERTLRDILEWVVLGLLVVVGVLLALWVGGWVFTFLGKVLLALSGLIWTLLTYAIPVLIVAAIGYGVVYFLQKRSSSAS
>NZ_CP010822.1|WP_003045747.1|1011494_1012160_+|DNA-repair-protein-RecO
MERYRLEEGIVVGRKPLAQGDLLVRFLTPKGSLEAVARKGQRPTGRTGRLSLFHHVRFQLYAKEEGLPTLTQAELIGRLHGLEEPRRFLLASFLAELAYRLASPEAAPRIYPVFVSGLRGIAKHKEPLLPLVWAGWRALKAGGLSPNLLGPGLHLKGGRLGEEGVYLGEKGVEALRAVLHLKGGEALPYLEEAPLDRLFLALKAHAEESLGPLRSAEAIGV
>NZ_CP010822.1|WP_003045750.1|1012146_1012617_-|transcription-elongation-factor-GreA
MKKPVYLTPEGFRRLQEELNHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNEARIAQLEDLLARAVIVEGNGSYDQVALGCQVELETESGERLSLAIVGSHEADIFSGKISDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIKPL
>NZ_CP010822.1|WP_003045751.1|1012673_1013420_-|aminotransferase-class-IV
MKRVLLSGKPFAEPLPEGFLYHGYSVFTTLRAEGGRPLWLPDHLARLRRHAEALGLGYPGDEAFLQDLKVLLAAFPQAPCLRLRLTVGEGVWLSEARPYAPPPRALYREGVRVHLTPYRVHPDLFPYKTGNYLPYRLALEEAKRQGAFEGLLLNEKGHVVDGSRTSPLLFRKGTLYLLEGGLEGLTREKVAEAARELGLKVERVHLRPEELEGALLLAGSGVGLLPVGRPPEALFPLIERFLPACYTE
>NZ_CP010822.1|WP_003045753.1|1013416_1015267_-|aminodeoxychorismate-components-I/II
MLGLFQAARALGLRPALLESLGPKTPFSRLSLLGLKPRHRLEVLEGRLYLDGRRVGEALDLFRYLERGLGRGFFPAWMGFFAYEFARHLGLPTHPPVPGLPEAAFFYYPEGFAFLEGRLVERPTLPIRPSPYLPPPLPPLRLYSDYPKARFLEGVREVQERIRAGVVYQVNLSHRFRAQGALDPLALYARLRAQNPSPFMGLLEGEGWAVVSGSPERLFQKVGARVLTRPIAGTRPRGRKEAEDLRLEEELLSSPKERAEHAMLVDLLRNDLAKVALPGTVRVRELFTVERYAHVMHLVSEVEGYTRASLGEVFAALFPGGTITGAPKGTVMEAIRDLEPVPRGAYTGSLGYVSGRGADFNILIRSMYQVKETLYFSAGAGVVIASDPNKEYEETLHKAEGLLRALTGGRPGSPLAPPKPTARWAPPPPPRRLEARVLFLENRDSFSHNLVDYLRALGAEVEVVDQEEAPRFSGFTHLLVGPGPKDPYRAGRVLEWTKRALEEGIPFLGVCLGHQALGVALGAELYREAPVHGEAHPIHHSGEALFRGLPNPLPFARYHSLALRRLPPALRLLAWTEDGVPMAIWDGRRAFGVQFHPESILSPWGMELLARFLEVG
>NZ_CP010822.1|WP_003045755.1|1015289_1015811_+|Uma2-family-endonuclease
MVKHRFTVEAYHKAYEAGALPERVELLEGEVYAVSPMGKNHIRYLIHLTKVFSEAFGDEALVVSQIPILLSEVSEPEPDLVLLAPPESRYDQRPPRAEDVLLLVEISDTTLVQDRALKLPLYQKAGIPEVWLVNLVEEVLEVYAFPHYAMERHPKGEAVAPRAFPTRPVAWWV
>NZ_CP010822.1|WP_003045757.1|1015891_1019449_-|methionine-synthase
MVEVHTCSPGCRHHLGGAGWGEAPLVRLGYNKEARARKFPYLKALLERPVIFDGAMGTELQKRDLTPEDYGGEAYYGCPEVLNATRPEVIREIHLAYLEAGAEVIETNTFGALRHVLAEYGLGHRAEELAYLGARLAKEAAEPYGAFVAGALGPGTKLISLGQITWDELFAAYKEAVRGLLRGGVDLVLLETAQDILQVRCAVLAAREAMAEVGREVPLQVQVTIEATGTMLVGTDEQAALAALESLPIDVVGMNCATGPDLMDNKIRYFAQNSTRFVSCLPNAGLPRNEGGKVVYDLTPEELARWHRKFVAEYGVNAVGGCCGTGPEHIRRVAEAVRGLPAPGRPKAFPPQVASLYLAVPLKQEASVFLVGERLNATGSKRFREMLFGRDLEGILALAREQVEEGAHALDLSVAWTGRDELEDLQWLLPHLATAVTVPFMVDSTSPEAMELALKHLPGRVLLNSVNLEDGLEKFDRVASLAKAHGAALVALTIDEKGMAKTRAEKVRVALRMYERLTLHHGFRPEDLLLDLLTFPITQGDEESRPLARETLLAMEELKERLPGVGFILGISNVSFGLKPRARRVLNSVFLDEARKRGLTAAIVDAGKILPIAQIPEEAYALALDLIHDRRREGYDPLFAFMAYFEAHREDVGAKEDAFSALPLLERLKRRVVEGRKGGLEADLEEALKAGHRPLDLINGPLLEGMKEVGELFGAGKMQLPFVLQAAEVMKRAVAFLEPHMEKRGEGKGKMVLATVKGDVHDIGKNLVDIILTNNGYQVINLGIKVPIEEMLKAVEEHRPHALGMSGLLVKSTVVMKENLEYMAERGYTLPVILGGAALTRAYVEELKAIYPNVYYAEDAFEGLRLMEELTGHAPPELTRREVKGREAPLPRVEVKAKPVGEPAFIPRPPFFGVRKEEGLDLYTIAHYVNKLALYRGQWGYSRKGLSREAWQALVEREAEPVFRRLLKEAREEGWLRPRVLYGFFPVAREGEELLVFSPETGEVLERFPFPRQKGGGLSLVDYFRPRFAPPLGDEAAWMPEAAFQAGARDVLGVQLVTMGEEPSLKAKALFESGAYQDYLFVHGFSVEMTEALAEYWHKRMRQMWGIAGKDATDVRKLFQQGYQGARYSFGYPACPDLSDQAKLDRLMGFSQIGVGLTENYQLVPEHSTSALVVHHPEARYFSAD
>NZ_CP010822.1|WP_003045759.1|1019491_1021015_+|nicotinate-phosphoribosyltransferase
MDPFGILYTDLYQLTMGQVYFRMGLHEREALFETFYRRNPDYGAHQAGYTVFAGLDPLLSWMEEARFGEAELNALRALKSRSGRPLFSEDYLAYLKAMGGFSGLTVRAHLEGRVAHPQVPLISVEGPLLQAQLLETALLNRINYETLVATKASRVREAAGEAVVLEFGLRRAPGKGGESATRASLIGGADRSSAVSLSHLLGLPSSGTHAHSLVQAFLALGHSEEEAFQAFAEVFPDDTILLLDTVDTLHSGLPHAIKVFEALRKKGHRPVGVRIDSGDLAYLAIQVARELDKAGFPEALIVLSGDLDELVIWQIKSQILEEAPRYGVEPEALLKRLVFGVGTRMVVSWGYPALGGVYKLVAIRENGAWAPAIKISDSLEKILNPGHKRVYRVYDERGLATADLLALAEEEVREDRPLTLRHPTDPTKRRVLSPGAFTLEPLLVEVFRGGKRLFPPLSIKELRARRDRDVARLDPGVRRLVNPHIYHVSLTERLFALKEELVRKLDR
>NZ_CP010822.1|WP_003045761.1|1021094_1022285_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MKKPRPFCSFCGLRPPETGRLLESPIDEVYICEDCVERAQEILRQGERPKGPTRLPKPQEIKAHLDGYVVGQEAAKRALSVAVYNHYKRLLHPEAEIGKSNILLIGPTGTGKTLLAETLARFLEVPFAIADATTLTEAGYVGEDVENVILRLLQNADFDVARAEMGIVYIDEIDKIARKSENPSLTRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPHQEFIPVNTKNILFILGGAFEGLENIVKARTERTTIGFTRPRAKEEPMEVIPEDLVKFGLIPEFVGRAPLIVQLHPLGEEDLVRILTEPKNALVKQYQALLRMEGIELRFTQAALREIARRALKRGTGARGLRAILEKTMVDLMFEAPGSGVREIVIDLPHLDQPLKALEEAKLRQAS

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Crispr_ID: NZ_CP010822_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010822_7

1010468-1010734

Orphan

III-A

Consensus_repeat	Method
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CRISPRCasFinder
AGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP010822_7

>merge|NZ_CP010822|7|1010468-1010734|CRISPRCasFinder,PILER-CR
GTATCAATCCCCTTACGGGGCTAGGTGGTTTGCAACCTGGTGAACAACGGCGTGGCGCTGGTCCAGGGGGTGCCCCTGAAGTCGCAATCCCCTTACGGGGCTAGGTGGTTTGCAACAACTCAGCTATGAGCCCCCACTCGTCTATGCACATCACTAGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACATGAGGACATGCGGGCTTTGGCCCTTTTCTTTGGGCGGCGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

>NZ_CP010822|7|7|1010468-1010734|CRISPRCasFinder
GTATCAATCCCCTTACGGGGCTAGGTGGTTTGCAAC	CTGGTGAACAACGGCGTGGCGCTGGTCCAGGGGGTGCCCCTGAA
GTCGCAATCCCCTTACGGGGCTAGGTGGTTTGCAAC	AACTCAGCTATGAGCCCCCACTCGTCTATGCACATCACTA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	ATGAGGACATGCGGGCTTTGGCCCTTTTCTTTGGGCGGC
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

>NZ_CP010822|7|4|1010547-1010734|PILER-CR
AGTCGCAATCCCCTTACGGGGCTAGGTGGTTTGCAAC	AACTCAGCTATGAGCCCCCACTCGTCTATGCACATCACT
AGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	ATGAGGACATGCGGGCTTTGGCCCTTTTCTTTGGGCGG
CGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010822.1\|WP_003045764.1\|1022271_1022856_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP010822.1\|WP_003045757.1\|1015891_1019449_-\|methionine-synthase	unknown	unknown	gnl\|CDD\|273959
NZ_CP010822.1\|WP_003045759.1\|1019491_1021015_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NZ_CP010822.1\|WP_003045761.1\|1021094_1022285_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP010822.1\|WP_003045732.1\|1003738_1004134_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223299
NZ_CP010822.1\|WP_157628169.1\|1009194_1009386_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003045736.1\|1005141_1005681_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NZ_CP010822.1\|WP_003045730.1\|1002389_1003736_+\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_CP010822.1\|WP_003045725.1\|1000617_1000881_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NZ_CP010822.1\|WP_003045745.1\|1011231_1011471_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003045747.1\|1011494_1012160_+\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|224299
NZ_CP010822.1\|WP_003045755.1\|1015289_1015811_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP010822.1\|WP_003045743.1\|1009502_1010456_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP010822.1\|WP_003045740.1\|1008324_1009080_-\|YmdB-family-metallophosphoesterase	unknown	unknown	gnl\|CDD\|277328
NZ_CP010822.1\|WP_003045728.1\|1000888_1002181_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP010822.1\|WP_003045751.1\|1012673_1013420_-\|aminotransferase-class-IV	unknown	unknown	gnl\|CDD\|376449
NZ_CP010822.1\|WP_003045753.1\|1013416_1015267_-\|aminodeoxychorismate-components-I/II	unknown	unknown	gnl\|CDD\|223225
NZ_CP010822.1\|WP_003045750.1\|1012146_1012617_-\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|273638
NZ_CP010822.1\|WP_003045735.1\|1004100_1005138_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP010822.1\|WP_003045738.1\|1005754_1008328_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570

Protein	Function_ID	Function_description	E-value
NZ_CP010822.1\|WP_003045764.1\|1022271_1022856_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	3.93107e-139
NZ_CP010822.1\|WP_003045761.1\|1021094_1022285_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_CP010822.1\|WP_003045732.1\|1003738_1004134_+\|hypothetical-protein	gnl\|CDD\|223299	COG0221, Ppa, Inorganic pyrophosphatase [Energy production and conversion].	3.59198e-10
NZ_CP010822.1\|WP_003045751.1\|1012673_1013420_-\|aminotransferase-class-IV	gnl\|CDD\|376449	pfam01063, Aminotran_4, Amino-transferase class IV. The D-amino acid transferases (D-AAT) are required by bacteria to catalyze the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity.	4.1328e-42
NZ_CP010822.1\|WP_003045736.1\|1005141_1005681_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	6.4761e-56
NZ_CP010822.1\|WP_003045730.1\|1002389_1003736_+\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	2.91072e-145
NZ_CP010822.1\|WP_003045725.1\|1000617_1000881_-\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	6.15544e-39
NZ_CP010822.1\|WP_003045738.1\|1005754_1008328_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP010822.1\|WP_003045747.1\|1011494_1012160_+\|DNA-repair-protein-RecO	gnl\|CDD\|224299	COG1381, RecO, Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair].	3.28839e-13
NZ_CP010822.1\|WP_003045755.1\|1015289_1015811_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	6.39614e-24
NZ_CP010822.1\|WP_003045743.1\|1009502_1010456_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	3.73713e-30
NZ_CP010822.1\|WP_003045740.1\|1008324_1009080_-\|YmdB-family-metallophosphoesterase	gnl\|CDD\|277328	cd07382, MPP_DR1281, Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.45539e-135
NZ_CP010822.1\|WP_003045728.1\|1000888_1002181_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP010822.1\|WP_003045757.1\|1015891_1019449_-\|methionine-synthase	gnl\|CDD\|273959	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase. This family represents 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), one of at least three different enzymes able to convert homocysteine to methionine by transferring a methyl group on to the sulfur atom. It is also called the vitamin B12(or cobalamine)-dependent methionine synthase. Other methionine synthases include 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP010822.1\|WP_003045753.1\|1013416_1015267_-\|aminodeoxychorismate-components-I/II	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	9.58535e-139
NZ_CP010822.1\|WP_003045750.1\|1012146_1012617_-\|transcription-elongation-factor-GreA	gnl\|CDD\|273638	TIGR01462, Transcription_elongation_factor_GreA, transcription elongation factor GreA. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreA differs functionally in that it releases smaller oligonucleotides. Because members of the family outside the Proteobacteria resemble GreA more closely than GreB, the GreB clade (TIGR01461) forms a plausible outgroup and the remainder of the GreA/B family, included in this model, is designated GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein. [Transcription, Transcription factors].	1.60157e-60
NZ_CP010822.1\|WP_003045759.1\|1019491_1021015_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NZ_CP010822.1\|WP_003045735.1\|1004100_1005138_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0

>NZ_CP010822.1|WP_003045743.1|1009502_1010456_+|IS110-family-transposase
MLCAGIDVSKPHLDLALVSTTAKPTRLRFPNTPEGRQALLAALAHHRPTWVALEPTGAYHLPLLQLLAEKGLQVALVNPYHLAAFRRATGERHKTDRQDALLLARYAQVYGESLRAYTLPPKALQELKALVGYREDLAQRARAILNQLEAARWAGSEEILVLLQRELACVEGLLGEVEARIQALLAALPEAEVLMGLPGVGPQVAAVVLALLPPHLWGRAKAAASYAGLIPEREESGKSVERSRLSRKGPPLLRRKLFMGALVVVRHDPEMGAFYHRLLSRGKRKKQALVAVAHKLLRRMMGRLREYYAGQSLQGVA
>NZ_CP010822.1|WP_157628169.1|1009194_1009386_+|hypothetical-protein
MKAFWTRCLRMPSQSPYGAKWFATLYDRYRDLVKVVEVSHVSCPLREVLPPVLPGSHARDFDR
>NZ_CP010822.1|WP_003045740.1|1008324_1009080_-|YmdB-family-metallophosphoesterase
MRLLFIGDVMAEPGLRAVSLHLPDIRDRYDLVIANGENAAKGKGLDKRSYRLLREAGVDLISLGNHAWDHKEVYELLEKEPVVRALNYPPGTPGKGFWRLEAGESLLFVQVMGRIFMDPLDDPFRALDALLEREKADYVLVEVHAEATSEKMALAHYLDGRVSAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYQSIIGGEIETFLARFLTGRPQPFRAAEGKARLHATELVLEGGRPISISPYVWEEP
>NZ_CP010822.1|WP_003045738.1|1005754_1008328_-|phosphoenolpyruvate-carboxylase
MTEPFELLKAEVDLLGRLLGEAIRRVSGERFFALVEEVRLLAKARRQGDEGAGEALWKRVGTLSTEEAEALVRAFTHYFHLVNLAEERHRVRVNRMRAQAETPENPRPEGFLALAQALKGRGLSLEEAEAHLNRLELLLTFTAHPTETRRRTLRHHLEALQGELEEGERTRLEARVALLYATEEVRKARPSVEDEIKGGLYYLPTTLWRAIPKVVEGLETALERVYGKRPRLKSPVRFRSWIGGDRDGNPFVTPEVTRFAARYAREVAKEKVLEELGALVRDLSLSEAKVPVPREVRAGGEGVERFPGEPYRRFFAQIYRKVSQDEATTEELLSALKVAEGGLRAVGLEEVGKSFLRPLEARLSAFGLELAPLDLREESGKLLLAAAELLRLGGVHPDFLSLSPEAQEALLTEELKTARPLLPVGEEPQEEALRVALGALRAWRDKGAHVVSMTHHPADLLSVFLLAREVGLYRPGKPLPFDVVPLFETLEDLRRAPLVLRRLLENPVFLAHARGRGGVEVMIGYSDSNKDAGFLMANLALYEAQEALSRVGEERGLPVHFFHGRGTSTARGGGPAGRAIASLPPRSVGRRLRLTEQGEALADRYGHPDLAVRHLEQLLFHFAQAALGDGVEPKPHWREALSWAGERSMAHYRALLAEEGFFPFFEALTPIREIGELPIASRPVYRHGRVRDIGDLRAIPWVMAWTQVRLLLPGWYGLSTLEELPLELLREMYREWPFFATTLESAAMALAKADLGVARLYLRLVPEALHPLFHRIAEEYLRTQALLEAIFQAPLLHNQRTLERQIALRNPYVDPINIVQVELLRRYRAPGGREDEALRKALLLSILGVAAGLRNAG
>NZ_CP010822.1|WP_003045736.1|1005141_1005681_-|NYN-domain-containing-protein
MELLGHHQDQRVGVFVDTQNLYHSARDYYERNVNFESLLRFAVGGRRLVRATAYVVEKEGDTSAWPFIYKLSTIGYRVRRMYLTVKETGEGGRPIYEGNWDMGIAADMVRLMPYLDVVVLGSGDGDFVEILEVLMERGIRVEVIAFRETTAQRLIDAVDRFVHLPEIPNPFMEPKNPER
>NZ_CP010822.1|WP_003045735.1|1004100_1005138_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MAGLEAYDYHLPPERIAQEGVEPRDLARMMVVYREGPFRVAHRRVRDLPEFLRPGDLLVFNESKVIPARLLARKPTGGRVEVLLVQERAPGLWEALLGPARRAPVGTELFFLSPRDWRPVPGLKAEVVGVEADGVRLLQIQGDLLAHLEEVGEVPLPPYIKAQIPLERYQTVYAKRPGSVAAPTAGLHFTPELMERLRGMGVELHFLTLHVGPGTFRPVKGDPEKHAMHAEPYEIPEATALAVNRAKAEGRRVIAVGTTVVRALESAYREGEGVAAGAGETRLFIRPPYAFKVIDGLFTNFHLPRSTLLMLVAAFLGYERTMEAYRLAVEEGYRFYSLGDAMLIL
>NZ_CP010822.1|WP_003045732.1|1003738_1004134_+|hypothetical-protein
MRLRMIVEWTKGSPFRHAWKEGRLVPVGEDRPAPVNYGLIPGLLNPADGEEVDAVLLGPPHPLGEAEGEVVGLLHLEDGDHKVLLAPQDSPPDENVAPLLAWFAPERRPTLFPKEAALDFLQRISMASPRE
>NZ_CP010822.1|WP_003045730.1|1002389_1003736_+|magnesium-transporter
MEKILSPILKALEEGDTLSLKRLLEEAHPQDLLLIWDDLNREHRYVLLTLLPKEKAAEVFSNLPPEDQAEYLKTLPPWRVQELLEELSLDDLADALQAVEEEDPALARKLKEALDPETRAEVEELTQYEEDEAGGLMTPEYVAVRASMAVEDVLRFLRRAAPDAETIYYLYVVDEEGRLMGVLSLRDLIVADPRTKVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEEEATEDIHKLAAVDVPDLVYSQASPLQLWLARVRWLIILILTGMVTSSILQGFESVLEAVTALAFYVPVLLGTGGNTGNQSATLIIRALATRDLELKDWRKVLLKESLVGVLLGLTLALFLLLKVRLDGHPALLPVVGLALFLLVLFANLVGSMLPMVLRRFGVDPALVSNPLIATLSDVMGLLIYLSVARLILGI
>NZ_CP010822.1|WP_003045728.1|1000888_1002181_-|signal-recognition-particle-protein
MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKELSLEDFLKQMQNLKRLGPFSEILGLLPGVPQGLKVDEKAIKRLEAIVLSMTPEERKDPRILNGSRRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSLEKKKGRGLMGMFRR
>NZ_CP010822.1|WP_003045725.1|1000617_1000881_-|30S-ribosomal-protein-S16
MVKIRLSRFGSKHNPHYRIVVTDVRRKRDGAYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQETQGA
>NZ_CP010822.1|WP_003045745.1|1011231_1011471_-|hypothetical-protein
MERTLRDILEWVVLGLLVVVGVLLALWVGGWVFTFLGKVLLALSGLIWTLLTYAIPVLIVAAIGYGVVYFLQKRSSSAS
>NZ_CP010822.1|WP_003045747.1|1011494_1012160_+|DNA-repair-protein-RecO
MERYRLEEGIVVGRKPLAQGDLLVRFLTPKGSLEAVARKGQRPTGRTGRLSLFHHVRFQLYAKEEGLPTLTQAELIGRLHGLEEPRRFLLASFLAELAYRLASPEAAPRIYPVFVSGLRGIAKHKEPLLPLVWAGWRALKAGGLSPNLLGPGLHLKGGRLGEEGVYLGEKGVEALRAVLHLKGGEALPYLEEAPLDRLFLALKAHAEESLGPLRSAEAIGV
>NZ_CP010822.1|WP_003045750.1|1012146_1012617_-|transcription-elongation-factor-GreA
MKKPVYLTPEGFRRLQEELNHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNEARIAQLEDLLARAVIVEGNGSYDQVALGCQVELETESGERLSLAIVGSHEADIFSGKISDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIKPL
>NZ_CP010822.1|WP_003045751.1|1012673_1013420_-|aminotransferase-class-IV
MKRVLLSGKPFAEPLPEGFLYHGYSVFTTLRAEGGRPLWLPDHLARLRRHAEALGLGYPGDEAFLQDLKVLLAAFPQAPCLRLRLTVGEGVWLSEARPYAPPPRALYREGVRVHLTPYRVHPDLFPYKTGNYLPYRLALEEAKRQGAFEGLLLNEKGHVVDGSRTSPLLFRKGTLYLLEGGLEGLTREKVAEAARELGLKVERVHLRPEELEGALLLAGSGVGLLPVGRPPEALFPLIERFLPACYTE
>NZ_CP010822.1|WP_003045753.1|1013416_1015267_-|aminodeoxychorismate-components-I/II
MLGLFQAARALGLRPALLESLGPKTPFSRLSLLGLKPRHRLEVLEGRLYLDGRRVGEALDLFRYLERGLGRGFFPAWMGFFAYEFARHLGLPTHPPVPGLPEAAFFYYPEGFAFLEGRLVERPTLPIRPSPYLPPPLPPLRLYSDYPKARFLEGVREVQERIRAGVVYQVNLSHRFRAQGALDPLALYARLRAQNPSPFMGLLEGEGWAVVSGSPERLFQKVGARVLTRPIAGTRPRGRKEAEDLRLEEELLSSPKERAEHAMLVDLLRNDLAKVALPGTVRVRELFTVERYAHVMHLVSEVEGYTRASLGEVFAALFPGGTITGAPKGTVMEAIRDLEPVPRGAYTGSLGYVSGRGADFNILIRSMYQVKETLYFSAGAGVVIASDPNKEYEETLHKAEGLLRALTGGRPGSPLAPPKPTARWAPPPPPRRLEARVLFLENRDSFSHNLVDYLRALGAEVEVVDQEEAPRFSGFTHLLVGPGPKDPYRAGRVLEWTKRALEEGIPFLGVCLGHQALGVALGAELYREAPVHGEAHPIHHSGEALFRGLPNPLPFARYHSLALRRLPPALRLLAWTEDGVPMAIWDGRRAFGVQFHPESILSPWGMELLARFLEVG
>NZ_CP010822.1|WP_003045755.1|1015289_1015811_+|Uma2-family-endonuclease
MVKHRFTVEAYHKAYEAGALPERVELLEGEVYAVSPMGKNHIRYLIHLTKVFSEAFGDEALVVSQIPILLSEVSEPEPDLVLLAPPESRYDQRPPRAEDVLLLVEISDTTLVQDRALKLPLYQKAGIPEVWLVNLVEEVLEVYAFPHYAMERHPKGEAVAPRAFPTRPVAWWV
>NZ_CP010822.1|WP_003045757.1|1015891_1019449_-|methionine-synthase
MVEVHTCSPGCRHHLGGAGWGEAPLVRLGYNKEARARKFPYLKALLERPVIFDGAMGTELQKRDLTPEDYGGEAYYGCPEVLNATRPEVIREIHLAYLEAGAEVIETNTFGALRHVLAEYGLGHRAEELAYLGARLAKEAAEPYGAFVAGALGPGTKLISLGQITWDELFAAYKEAVRGLLRGGVDLVLLETAQDILQVRCAVLAAREAMAEVGREVPLQVQVTIEATGTMLVGTDEQAALAALESLPIDVVGMNCATGPDLMDNKIRYFAQNSTRFVSCLPNAGLPRNEGGKVVYDLTPEELARWHRKFVAEYGVNAVGGCCGTGPEHIRRVAEAVRGLPAPGRPKAFPPQVASLYLAVPLKQEASVFLVGERLNATGSKRFREMLFGRDLEGILALAREQVEEGAHALDLSVAWTGRDELEDLQWLLPHLATAVTVPFMVDSTSPEAMELALKHLPGRVLLNSVNLEDGLEKFDRVASLAKAHGAALVALTIDEKGMAKTRAEKVRVALRMYERLTLHHGFRPEDLLLDLLTFPITQGDEESRPLARETLLAMEELKERLPGVGFILGISNVSFGLKPRARRVLNSVFLDEARKRGLTAAIVDAGKILPIAQIPEEAYALALDLIHDRRREGYDPLFAFMAYFEAHREDVGAKEDAFSALPLLERLKRRVVEGRKGGLEADLEEALKAGHRPLDLINGPLLEGMKEVGELFGAGKMQLPFVLQAAEVMKRAVAFLEPHMEKRGEGKGKMVLATVKGDVHDIGKNLVDIILTNNGYQVINLGIKVPIEEMLKAVEEHRPHALGMSGLLVKSTVVMKENLEYMAERGYTLPVILGGAALTRAYVEELKAIYPNVYYAEDAFEGLRLMEELTGHAPPELTRREVKGREAPLPRVEVKAKPVGEPAFIPRPPFFGVRKEEGLDLYTIAHYVNKLALYRGQWGYSRKGLSREAWQALVEREAEPVFRRLLKEAREEGWLRPRVLYGFFPVAREGEELLVFSPETGEVLERFPFPRQKGGGLSLVDYFRPRFAPPLGDEAAWMPEAAFQAGARDVLGVQLVTMGEEPSLKAKALFESGAYQDYLFVHGFSVEMTEALAEYWHKRMRQMWGIAGKDATDVRKLFQQGYQGARYSFGYPACPDLSDQAKLDRLMGFSQIGVGLTENYQLVPEHSTSALVVHHPEARYFSAD
>NZ_CP010822.1|WP_003045759.1|1019491_1021015_+|nicotinate-phosphoribosyltransferase
MDPFGILYTDLYQLTMGQVYFRMGLHEREALFETFYRRNPDYGAHQAGYTVFAGLDPLLSWMEEARFGEAELNALRALKSRSGRPLFSEDYLAYLKAMGGFSGLTVRAHLEGRVAHPQVPLISVEGPLLQAQLLETALLNRINYETLVATKASRVREAAGEAVVLEFGLRRAPGKGGESATRASLIGGADRSSAVSLSHLLGLPSSGTHAHSLVQAFLALGHSEEEAFQAFAEVFPDDTILLLDTVDTLHSGLPHAIKVFEALRKKGHRPVGVRIDSGDLAYLAIQVARELDKAGFPEALIVLSGDLDELVIWQIKSQILEEAPRYGVEPEALLKRLVFGVGTRMVVSWGYPALGGVYKLVAIRENGAWAPAIKISDSLEKILNPGHKRVYRVYDERGLATADLLALAEEEVREDRPLTLRHPTDPTKRRVLSPGAFTLEPLLVEVFRGGKRLFPPLSIKELRARRDRDVARLDPGVRRLVNPHIYHVSLTERLFALKEELVRKLDR
>NZ_CP010822.1|WP_003045761.1|1021094_1022285_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MKKPRPFCSFCGLRPPETGRLLESPIDEVYICEDCVERAQEILRQGERPKGPTRLPKPQEIKAHLDGYVVGQEAAKRALSVAVYNHYKRLLHPEAEIGKSNILLIGPTGTGKTLLAETLARFLEVPFAIADATTLTEAGYVGEDVENVILRLLQNADFDVARAEMGIVYIDEIDKIARKSENPSLTRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPHQEFIPVNTKNILFILGGAFEGLENIVKARTERTTIGFTRPRAKEEPMEVIPEDLVKFGLIPEFVGRAPLIVQLHPLGEEDLVRILTEPKNALVKQYQALLRMEGIELRFTQAALREIARRALKRGTGARGLRAILEKTMVDLMFEAPGSGVREIVIDLPHLDQPLKALEEAKLRQAS
>NZ_CP010822.1|WP_003045764.1|1022271_1022856_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MVIPYVIEQTARGERVYDIYSRLLKDRIIFLGTPIDAQVANTIVAQLLFLDAQNPNQEIRLYINSPGGEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHSKVMIHQPWGGARGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVERDTDRDYYLSAQEALEYGLIDQVVTREEA

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Crispr_ID: NZ_CP010822_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010822_8

1232917-1233872

TypeIII

III-A

Consensus_repeat	Method
GTCGCAATCCCCTTACGGGGCTAAGTGG	CRISPRCasFinder
GTCGCAATCCCCTTACGGGGCTAAGTGG	CRT
GTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAAC	PILER-CR

12 spacers

cas3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas6

The CRISPR arrays of NZ_CP010822_8

>merge|NZ_CP010822|8|1232917-1233872|CRISPRCasFinder,CRT,PILER-CR
GCCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAACCTGGCGGTCAAGGTGCCCGGTCCATGGACCAGCTACATCCTGTCGCAATCCCCTTGCGGGGCTAAGTGGTTTGCAACCTGGAGCCGTTACGCAAGCAGTGAGGTTTGCCCTCGCGTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAACGCAAGAAGAAGGAAATCGTGGCTCAGTACCGGGTCTTCACGTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAACGGAGGTATTTGACATTCTTGTTTACGCCTCTGACACTTCAGAGTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAACTGAACGCCGGGGTGCTTGGGGGACAGGCCTGGAAGTACGCGTCGCAATCCCCTTACGGGGCTATGTGGTTTGCAACTCCTCGAGGGCTACCTTGACCCCGAGGCCTTTCTGAAGCAGAGTCGCAATCCCCTTGCGGGGCTATGTGGTTTGCAACTACATCCAGAGTGGCCGCCACAGGGTGGTCGTGGAGGTGTTTTACCTCGGGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACCTCGCTTCGTGATGACGACAGGAATCCCGCGCGAAACCCCGTGTCGCAATCCCCTTACGGGGCTAAGTGGTTCGCAACCCCGGCGATGGCGAGGGCACCATTACCGCCCTCAGCTAGTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAACTCCGGGCCTTCGGGGCCTCCGCCGTCCTGGAGCACATGGAGTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAACCCACTGGCCGTTTTCAATCCGGCCAGTGTACACTACAGTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAACCTGAGGCCGCGGCTATTGTTGCCGAGGCCCTTAGGGAGAGTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAAC

>NZ_CP010822|8|8|1232917-1233864|CRISPRCasFinder
GCCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACCTGGCGGTCAAGGTGCCCGGTCCATGGACCAGCTACATCCT
GTCGCAATCCCCTTGCGGGGCTAAGTGG	TTTGCAACCTGGAGCCGTTACGCAAGCAGTGAGGTTTGCCCTCGC
GTCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACGCAAGAAGAAGGAAATCGTGGCTCAGTACCGGGTCTTCAC
GTCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACGGAGGTATTTGACATTCTTGTTTACGCCTCTGACACTTCAGA
GTCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACTGAACGCCGGGGTGCTTGGGGGACAGGCCTGGAAGTACGC
GTCGCAATCCCCTTACGGGGCTATGTGG	TTTGCAACTCCTCGAGGGCTACCTTGACCCCGAGGCCTTTCTGAAGCAGA
GTCGCAATCCCCTTGCGGGGCTATGTGG	TTTGCAACTACATCCAGAGTGGCCGCCACAGGGTGGTCGTGGAGGTGTTTTACCTCGG
GTCGCAATCCCCTTACGGGGCTAAGTGG	TTTGCAACCTCGCTTCGTGATGACGACAGGAATCCCGCGCGAAACCCCGT
GTCGCAATCCCCTTACGGGGCTAAGTGG	TTCGCAACCCCGGCGATGGCGAGGGCACCATTACCGCCCTCAGCTA
GTCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACTCCGGGCCTTCGGGGCCTCCGCCGTCCTGGAGCACATGGA
GTCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACCCACTGGCCGTTTTCAATCCGGCCAGTGTACACTACA
GTCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACCTGAGGCCGCGGCTATTGTTGCCGAGGCCCTTAGGGAGA
GTCGCAATCCCCTTACGGGGCTAAGTGG

>NZ_CP010822|8|4|1232917-1233864|CRT
GCCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACCTGGCGGTCAAGGTGCCCGGTCCATGGACCAGCTACATCCT
GTCGCAATCCCCTTGCGGGGCTAAGTGG	TTTGCAACCTGGAGCCGTTACGCAAGCAGTGAGGTTTGCCCTCGC
GTCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACGCAAGAAGAAGGAAATCGTGGCTCAGTACCGGGTCTTCAC
GTCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACGGAGGTATTTGACATTCTTGTTTACGCCTCTGACACTTCAGA
GTCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACTGAACGCCGGGGTGCTTGGGGGACAGGCCTGGAAGTACGC
GTCGCAATCCCCTTACGGGGCTATGTGG	TTTGCAACTCCTCGAGGGCTACCTTGACCCCGAGGCCTTTCTGAAGCAGA
GTCGCAATCCCCTTGCGGGGCTATGTGG	TTTGCAACTACATCCAGAGTGGCCGCCACAGGGTGGTCGTGGAGGTGTTTTACCTCGG
GTCGCAATCCCCTTACGGGGCTAAGTGG	TTTGCAACCTCGCTTCGTGATGACGACAGGAATCCCGCGCGAAACCCCGT
GTCGCAATCCCCTTACGGGGCTAAGTGG	TTCGCAACCCCGGCGATGGCGAGGGCACCATTACCGCCCTCAGCTA
GTCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACTCCGGGCCTTCGGGGCCTCCGCCGTCCTGGAGCACATGGA
GTCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACCCACTGGCCGTTTTCAATCCGGCCAGTGTACACTACA
GTCGCAATCCCCTTACGGGGCTAAGTGG	CTTGCAACCTGAGGCCGCGGCTATTGTTGCCGAGGCCCTTAGGGAGA
GTCGCAATCCCCTTACGGGGCTAAGTGG

>NZ_CP010822|8|5|1232994-1233872|PILER-CR
GTCGCAATCCCCTTGCGGGGCTAAGTGGTTTGCAAC	CTGGAGCCGTTACGCAAGCAGTGAGGTTTGCCCTCGC
GTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAAC	GCAAGAAGAAGGAAATCGTGGCTCAGTACCGGGTCTTCAC
GTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAAC	GGAGGTATTTGACATTCTTGTTTACGCCTCTGACACTTCAGA
GTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAAC	TGAACGCCGGGGTGCTTGGGGGACAGGCCTGGAAGTACGC
GTCGCAATCCCCTTACGGGGCTATGTGGTTTGCAAC	TCCTCGAGGGCTACCTTGACCCCGAGGCCTTTCTGAAGCAGA
GTCGCAATCCCCTTGCGGGGCTATGTGGTTTGCAAC	TACATCCAGAGTGGCCGCCACAGGGTGGTCGTGGAGGTGTTTTACCTCGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CTCGCTTCGTGATGACGACAGGAATCCCGCGCGAAACCCCGT
GTCGCAATCCCCTTACGGGGCTAAGTGGTTCGCAAC	CCCGGCGATGGCGAGGGCACCATTACCGCCCTCAGCTA
GTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAAC	TCCGGGCCTTCGGGGCCTCCGCCGTCCTGGAGCACATGGA
GTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAAC	CCACTGGCCGTTTTCAATCCGGCCAGTGTACACTACA
GTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAAC	CTGAGGCCGCGGCTATTGTTGCCGAGGCCCTTAGGGAGA
GTCGCAATCCCCTTACGGGGCTAAGTGGCTTGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010822.1\|WP_003047976.1\|1242553_1243939_+\|TIGR02710-family-CRISPR-associated-protein	csx1	cd09747_csx1_CAS-III	gnl\|CDD\|378236
NZ_CP010822.1\|WP_003047946.1\|1226336_1227557_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP010822.1\|WP_003047949.1\|1228776_1231080_+\|ATP-dependent-DNA-helicase-RecG	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP010822.1\|WP_003047971.1\|1240346_1241297_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003047978.1\|1243938_1244682_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	gnl\|CDD\|273848
NZ_CP010822.1\|WP_003047969.1\|1240099_1240384_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003047961.1\|1237212_1237944_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NZ_CP010822.1\|WP_003047944.1\|1225489_1226347_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP010822.1\|WP_003047937.1\|1223046_1224549_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237738
NZ_CP010822.1\|WP_003047940.1\|1224601_1225474_-\|3-hydroxybutyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|180269
NZ_CP010822.1\|WP_060474009.1\|1237945_1238812_+\|hypothetical-protein	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|187794
NZ_CP010822.1\|WP_003047932.1\|1220998_1222135_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP010822.1\|WP_003047967.1\|1238808_1239936_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	mkCas0182_csm5gr7_CAS-III-A	gnl\|CDD\|224251
NZ_CP010822.1\|WP_003047956.1\|1234381_1236799_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP010822.1\|WP_003047954.1\|1231821_1232811_-\|esterase	unknown	unknown	gnl\|CDD\|367434
NZ_CP010822.1\|WP_003047973.1\|1241293_1242007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010822.1\|WP_003047959.1\|1236799_1237204_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|273844
NZ_CP010822.1\|WP_003047935.1\|1222131_1222998_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP010822.1\|WP_040684458.1\|1227549_1228761_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP010822.1\|WP_003047951.1\|1231085_1231838_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010822.1\|WP_003047976.1\|1242553_1243939_+\|TIGR02710-family-CRISPR-associated-protein	gnl\|CDD\|378236	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710). Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).	7.20971e-86
NZ_CP010822.1\|WP_003047946.1\|1226336_1227557_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	7.46532e-80
NZ_CP010822.1\|WP_003047949.1\|1228776_1231080_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP010822.1\|WP_003047978.1\|1243938_1244682_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.67509e-14
NZ_CP010822.1\|WP_003047961.1\|1237212_1237944_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.51947e-97
NZ_CP010822.1\|WP_003047944.1\|1225489_1226347_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	5.96374e-20
NZ_CP010822.1\|WP_003047959.1\|1236799_1237204_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	1.50879e-16
NZ_CP010822.1\|WP_003047940.1\|1224601_1225474_-\|3-hydroxybutyryl-CoA-dehydrogenase	gnl\|CDD\|180269	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	3.13398e-157
NZ_CP010822.1\|WP_003047932.1\|1220998_1222135_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP010822.1\|WP_003047967.1\|1238808_1239936_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.93207e-13
NZ_CP010822.1\|WP_003047956.1\|1234381_1236799_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_CP010822.1\|WP_003047954.1\|1231821_1232811_-\|esterase	gnl\|CDD\|367434	pfam03283, PAE, Pectinacetylesterase.	1.77635e-20
NZ_CP010822.1\|WP_003047937.1\|1223046_1224549_-\|4-alpha-glucanotransferase	gnl\|CDD\|237738	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.	0
NZ_CP010822.1\|WP_003047935.1\|1222131_1222998_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	1.19454e-164
NZ_CP010822.1\|WP_040684458.1\|1227549_1228761_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	6.00948e-65
NZ_CP010822.1\|WP_060474009.1\|1237945_1238812_+\|hypothetical-protein	gnl\|CDD\|187794	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.43343e-07

>NZ_CP010822.1|WP_003047954.1|1231821_1232811_-|esterase
MKRLIALVVALALALAQGLEAFWKAVEVPGGVCSDGSPYRFYVSPGDPKKVVLDFQGGGACWDAATCGPQSQTYRKRVDVQELLLAQGIYNRMSVANPFFGWTHVFVPYCTGDLHVGRATVDYGGFKVHHQGARNAQAALEYVFRNHAQAERVFVTGCSAGAYGAIFWADKVLATYKNAQVAVCGDAGVGVATPDFPGYARWNPRFPELPGLSARPSVSEIYLALSRAYPKAVLAQYTTLLDGTQIFFYGLMKGERTPSEATAREWATEAQKAVLTPAQAENYTFYLAPGSQHCILPRPELYTLKVGEASFLDWLKALAEGKVAPRVRP
>NZ_CP010822.1|WP_003047951.1|1231085_1231838_+|hypothetical-protein
MALEALPHPLLPAFFSPGGALRANALQAYLLSLTPAYAPYAPLPVVRLFVLSEKDWRARLPYPYGLPFQHTGPEGLILYAPLTYPERLLHRLREVLLPLGPPPGEIPAFLDLNLGHEYAHALQVAWRLRTGARWLDEFLANYLFLLGLKEKRPELAQELRLFSAYLARLNPEKKSLSLYERRRGNLESALWFQAHFTLKAWEVLEKDGDRLLKSFLAAAPLDRRKGHRLLLALYPDLKAWFAAFGLRGAP
>NZ_CP010822.1|WP_003047949.1|1228776_1231080_+|ATP-dependent-DNA-helicase-RecG
MGSVKEGEVRERLLRPILRELQDGARDRVVVGGLEGLVRNLARPFPKLLDLFQGYGEKDPEARKKVLEEALRILQDGQEKAPPPGPKPRLKPQDPAHLLAPPQSRKKLSELGLHTVRDVLHHYPRRYEDRRALPGVRYLEDGQKATLSVKVLAKELVRTPKKGMQLVQVKAMDAWGWRLALVWFNQPWVLSQIEEGATLIVTGRVQRRNGVQLLVEHFEDEGTESLSTGRIVPIYPAKEGVGQAFLRRTVHRALEMALPLPDPVEPYREGLALMPYSQALRAIHFPEDEEALKKALLRLKFDEYLLLELKALLDAGGVVLGRAFRVEEAWVEAFKKALPFPLTRAQERVMAEIAQDMQSPRQMARLLQGDVGSGKTVVAAFALYLAAMNGAQGALMAPTEILARQHFQNLTRYLFPLGVRVELLLGSTPAREREAILARLRSGEAQVAVGTHALIQEGVEFQDLGLAVVDEEHRFGVLQRRALLKMAKTPPDVLVMSATPIPRSLALTLYGDLEVSVLDEMPPGRTPVKTKVLPHRLRLQAYAFAREEIKKGHQVFVVAPAIEESELDLKAATLLYEELQGLLPEARIALLHGKMPAREKEAVMEAFRQGAYDLLVSTTVIEVGVDIPRATLIIVENAERFGLAQLHQLRGRVGRGGLPGYAIFLAGEASQKTMKRLKVLEASTDGFYIAEMDLKLRGPGELRGTRQSGYPELRLGDLAEDTEVIERARALAKAIVEEDPDLSLPKHQALKEELRAQAERIGFREVI
>NZ_CP010822.1|WP_040684458.1|1227549_1228761_-|insulinase-family-protein
MSRVERWPNGLTVALEERDFPGVAFQLLVPAGAVNDPEGLEGASTLLEGWLWKGAGELDARGLAQALDALGVRRSSGAGLEYTAFAASFLPEVLEEVFRLYALLLTRPRLPEEGFEAVRSVALQSLLSQEDQPARKLFSELRRRVFLSPHGRDPLGREEDLKRATPKALREDFGRRYTPRGAVLAVAGGVSWERLLGALEPLALWEGEEVLYPPPLLASPERFALRRPTAQVQIGLVYPDVGPEDPGFYAARLALEVLSGGMSSRLFTEVREKRGLVYAVSAFPAGVKGQGLLMAYAGTTRDRAKETLAVMLQEMERLAEGVTEEELARAKVGLRTALVMGDESIRTRASSMARDLYMLGRVRPLAEIEARVEGTTLAEVNAFLRAHPYRDPWVGLLGEVEDV
>NZ_CP010822.1|WP_003047946.1|1226336_1227557_-|insulinase-family-protein
MFREAVLKNGLRVIAEVLPGARSVALGYFVKTGARDEAPHESGVSHFLEHMVFKGPEGMDALSVNLAFDRMGAQYNAFTSEEATVYYGAVLPEFAPPLLALFSRLMLPALREEDFATEKQVILEEIARYQDRPGFMAYDWARRAFFRDHPLGNSVLGTEESIRALTREGMTAYHRRRYLAGNMVLAATGKVDFGWLLEEAERLTEGFYRGEAGRAYPPLAPATGLLEHPYDKAKALYLVGLFPGFAYGEEARFPAQVLAHLLGEEGSGRLHFALVDTGLAEAASFGHEEADRAGFFHAYVQADPAHKGEVLSALQEELARLAREGVGEEEVEKAKTPLATGLVFAGETPMGRLFHLGLEYLYTGRYLALEEVKARVLRVTAREVNALLERGFLDRGLYYLVLPHGA
>NZ_CP010822.1|WP_003047944.1|1225489_1226347_-|DMT-family-transporter
MEPRALLAALVTILFWASAFAAIRAGLKGLSPGHLVLLRFLVAGSVLLLYARARGLRPPRREDLPRLFLLGFLGITVYHVALVFGQLTVSAGAASLLIATGPVFTAVLSYFFLKERLRPLGVLGFALALLGSLLIAFGEGGGLAFSPGAFLVLLSALATSIYFVLQKPLFARYGSEAIAVYTLVLGTLPLLLFLPGLPEALLKAPGPALLSALYLGVFPGALAYLTWTYALSRTPASRLSSFLYLSPVLAILIAYLWLGEVPSPLSLLGGALALVGVVLVNLRVK
>NZ_CP010822.1|WP_003047940.1|1224601_1225474_-|3-hydroxybutyryl-CoA-dehydrogenase
MEVKTIGVVGAGQMGSGIAQVAAQAGYEVVLLDVSQEALERGLGAIRRSLAKFLEKGRITEEALEAALGRIRTTLDLEALGEADLIVEAIVEDEGAKRALLERLGALAKPEAILASNTSSIPITALGRYSGRPERFIGMHFFNPVPLMGLVEVIRGELTSAATRDVVVEVARRMGKTPLEVQDYPGFVSNRLLMPMINEAVEALREGVATKEAIDGIMRLGMNHPMGPLELADFIGLDTCLAIMEVLHRGFGDDKYRPSPLLRRMVQAGLLGRKVGRGFYVYDEKGNKVG
>NZ_CP010822.1|WP_003047937.1|1223046_1224549_-|4-alpha-glucanotransferase
MELPRAFGLLLHPTSLPGPYGVGVLGLEARDFLRFLKGAGGRFWQVLPLGPTGYGDSPYQALSAFAGNPYLIDLRPLAEKGYLVLKDPGFPQGRVDYGWLYAWKWPALKAAYQGFLERAPRKEREDFLAFREKEASWLKDYALFMALKAQHGGLPWNRWPLPLRRREEKALKEAEAALAEEVAFHAWTQWLFFEAWKALKEEAEALGIQIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRPTVVAGVPPDYFSETGQRWGNPLYRWDVLEREGFSFWIARLAKALELFHLVRVDHFRGFEAYWEIPASCPTAVEGRWVKAPGEKLFDRIQEVFGQVPILAEDLGVITPEVEALRDRYGLPGMKVLQFAFDDGMENPFLPHNYPAHGRVVVYTGTHDNDTTLGWYRTASPHERAFLERYLADWGISFRQEEEVPWALMGLCMKSAARLAIYPVQDVLALGSEARMNYPGRPSGNWAWRLLPGQLTQEHAARLLAMAEATGRA
>NZ_CP010822.1|WP_003047935.1|1222131_1222998_+|succinate--CoA-ligase-subunit-alpha
MILVNRETRVLVQGITGREGQFHTQQMLAYGTKIVAGVTPGKGGTEVLGVPVYDTVKEAVKNHAIDASIIFVPAPGAADAALEAAHAGIPLIVLITEGIPTLDMVKAVEEIRTLGVRLIGGNCPGIISAEETKLGIMPGHVFKRGRVGLISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNDDPETEAVVLIGEIGGSDEEEAAAWVKAHMKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLKAFAEAGIPVADTIDEIVELVKKALG
>NZ_CP010822.1|WP_003047932.1|1220998_1222135_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MNLHEYQAKEILARYGVPVPPGRVAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPAEAYEKAQAILGMNIKGLTVKKVLVAEAVDIAKEYYAGLILDRSKKRVVLMLSKEGGVDIEEVAAQRPEAIHKFWIDPHKGLRPFEAREMVRRAGLEGNLNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGAIVAADAKIVLDDNALFRHPELAELREVEAEHPLEVEASNYGFAYVKLDGNIGVIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGAKADVVYNALKLVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGTAEEEAKKLLEGKPIYMYPTSIEAAKAIVAMVGGAA
>NZ_CP010822.1|WP_003047956.1|1234381_1236799_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MVRDGLDLALAGLLHDVGKLYGRALWGERDERLPDRTHTAYTAHFVQKEAELFRKAGLDPGWLAQTASRHHEGWRDRPQYQPQSPEEWCVALADTYASQEREEGGQGGSPPEVPLKPPFSQLRLQGKEGRDGGYLPVGEGGRVGLAPGALYPEAGVPMGKATYGRLVERLEARLSEMARLSLTKEALLLNLALAFQEALSLVPADTQSEPDVSLYDHLRLTAAIAHALWLYHGGQPSVEELRRDGKKFLLVVGDLGGIQGHIYRISGAETGVGGIAKRLRARSLEVSLAAETMALGILRSLGLTPLNRILGAGGKFYLLLPNTEEAREALEEAQEAWGRWALRRGGSLVPNLAHLAFEGKEFRDFAGVLKALHQELAQAKLKPFPFLKKTEETQGEALRPCAACGLRPALKDEPGSLCPDCEREREVGGLLPKRDRVGFFPDGAPRPFFAFPSLKVALEDGPGAVHVFRAELDFRPSAAPAEAKPLLGHLPRVAHALKAKRVSLADYTAWARGEGLLEEEEGGEDRVLTFGELAALSQGAPYLGALMLDADRMGEAFATGFQREGRDLATPSRLAALSRTLEVFFATEVLELIRNPALYAGRLGWDALEARRKGERYPLIYSVYSGGDDLFLLGPWDVLLDFALDLERLYALFTGHEALTLSGGFVLAGPSLPIPELSRLLTRAEKAAKEAGRGRLFLFGQAVPWADLRKLRQEVEALRSDLRAERVSRAQVYRWLALWRRFWGQDMNEGERMRYKPLLAYALRRVRERDEGAWERYMGLLDHQGPAWRYLPVWVQWGLYLERRV
>NZ_CP010822.1|WP_003047959.1|1236799_1237204_+|type-III-A-CRISPR-associated-protein-Csm2
MPALEFYRDKEKGVLDPGIFEKAREVAEELVREGAIKSSQFRNYFAELRSLENRFERERREDEGLAFARLVPQLELLKAKLYYNTRSNGPLSRARAFVRFLEEAIDAGKRSPQDFEAMMKYVEAVLAYFYAKGR
>NZ_CP010822.1|WP_003047961.1|1237212_1237944_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MRLRKIIRIRSVLLAKTGLRIGMSRDQMAIGDLDNPVIRNPLTDEPYIPGSSLKGKLRYLLEWSLGGPYILEAKERHVYASPDPKDPVARIFGLAPENDEASLKVARERGPTRLLVRDAYLLEDSKRELERTAARGGLYTEIKQEVFIPRLGGNANPRTTERVPAGARFGVEMAYRVLDDLDEEYFQNYLLRALELLEVDGLGGHISRGYGQVYFLHPKKPWDAQEGLPLKERLLVEEIALGA
>NZ_CP010822.1|WP_060474009.1|1237945_1238812_+|hypothetical-protein
MRATLFRLYFQGPLKELPRAPALLGHVLWWYRYTHGREALEGLLEKPLPFRLSSVFPEGWLPRPKLPPVQVEETERRKAIKNLTLVSLETFQALAEKGEEVLLEAPEVLGRARPPEPRRLRRSRVGIDRGTGAARRGILFTQELLFPDPRTAYALYVMGEAPFDLRDALAFVGEMGFGGGASVGLGRFRVEGPQTVELPEAKEANAYATLAPGPLEGALYYDLEPYWGRLGGGYVGSKPFKGPYLRTREGSVYQEPTALYLDTTPQDPPEEGVRVREFLGVFPLGVRL
>NZ_CP010822.1|WP_003047967.1|1238808_1239936_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MSFLETFRLELEAISPVHVGTGETYPAYAYVPDFEKKEVHLLDPGVLLLALPEARRRQYLEKVAQGPKAAQDILAYLHKEGQLPQEAILRTLPASAAFLKTIQEATQEALLEWRPLPRSPLGAYLPGSSVKGALRTAWLFWTLVERDQAATFDEREGVWRLKKGSGDVHVRPSWNPSLWENQAFEGVVLGYIREGRRGMTLDLYQDPFRAVRLSDSAPQETFLNRIGVFHPQKDTSGLALLAETFRKGSRFTLGFRYHGGLSRHQGVSMPIPPKDLQRALREYYTKVAEWERGFAEEHGLKNALGVYEELFQRLKDPEVFPIRVGFGSGRLALRLALLLPEDHPEAREPKTRKTVGSANPRDGFPLGWMVGWIHR
>NZ_CP010822.1|WP_003047969.1|1240099_1240384_+|hypothetical-protein
MRNLQYLKALQEEGRYPVNQLAPAILREELRLQHLESELKKLDEAFRLAKEKVYRSARLKVAKMAARSGLALDLDRLFPEVKDESPGDAAEHQG
>NZ_CP010822.1|WP_003047971.1|1240346_1241297_+|hypothetical-protein
MSPLATLRNIRANFFGKRDGKAFSKKHASLAYLTVPPFPKELAERYRRVLEAHLHRYQAKRARLEEKLIQVRHLRQSLERVVGQDEPTPEVFSHMLAFGGRYALMGLIFSAELVFNKLAADTLGVNQLEAYIIGFIATLIMFWMGHEAGNQFRKGQKVLAGILLSVPLLMAVLFALLRAEFTQRMAQIVGAPASHWTLAALIALGLGLVAFTFFLGFKAPHERETLFRRYLMARNREKHLMGRLLFLHRQARKVQDYAMARYREEVAAYWRGFARAWPDWDPAPEFVGALPPLEPPKLPPEPPGPESLDESAKMPA
>NZ_CP010822.1|WP_003047973.1|1241293_1242007_+|hypothetical-protein
MKVLLLLFTLPFLGGKQEYQILVALGCSAPRALQNQYREMLANEVLPLLASRLQDQSLRLYLAPITGRSYTAPVRVIETPDALLSNRFQLEAYKATFKKEVLSAFDALRKRASVECSKGTEIIGALKAAGERAKGPGKILMMAHGFEQSELMNLYDYRLGLEKPEVRRRLLERVKAKLGLPKLQRQEICFTGLSAGNDNNANARLTSSIKDFWEELITESGGQLVGYGFSPRICPFW
>NZ_CP010822.1|WP_003047976.1|1242553_1243939_+|TIGR02710-family-CRISPR-associated-protein
MEELQALWDRYKEAVRSGGNPQALYQEMVWPALVARWKEAPNVHPRREAFAVSVHTLGTSPEATILAILGAGAERVYVLHTRESASYLERLQKETGKPIYPLEVGKSDVAAIYREVKRILDQHGDVPVALDLTSGTKAMSAGLAVAGFFFRRFYPKARVVYVDNEDYDSELRRPRAGTERLIILQDPHEVLGEVDALFAKELYGRGEFAQAARYFQKMVGATGDGRWTLYQSLAEMYEAWHALNFPEAHKKGSGLLDKLAQNAWLNHPLNRSRDLLEKQVSLLEAGKAFLEGKDLGHRRGVGAVARTLLHLGEKEHRPLLAALYAYRALELLLQERLYRYGRLADQPNLTPEEEAALRNALAEILGEPPSAVEVPKKLGLLHLIGLLRLLGDPLLAGKPAGELRGLGGVLQARNTSLLIHGFEVPTGRQVGALKGLAKDLLADLDKELGPAVSLEPLPLGF
>NZ_CP010822.1|WP_003047978.1|1243938_1244682_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MVLVALVLVLEGEGPPEPLGLRGFFYTLLKEAFPELHDQGENPFALGFGLRGGEPWARVSLLREDLYGRLSPALFGLEGREVRLGRLFRVRAVLQEGHPWAGLTTYARLFQGPHSPNLPLRFYSPTFFRRKGVQYPLPEPRLVLESLLRRLEAFGPLKAPQEVREALLERTTVRFLEGRTQMARTEVDTVGFVGKVVYHLPKATEEEALWLSALGRYAFFSGVGAKTSLGYGLARAFTQVGPQDAET

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Crispr_ID: NZ_CP010822_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010822_9

1731966-1732521

TypeIII

III-A

Consensus_repeat	Method
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CRISPRCasFinder
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CRT
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	PILER-CR

7 spacers

csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,cas10

The CRISPR arrays of NZ_CP010822_9

>merge|NZ_CP010822|9|1731966-1732521|CRISPRCasFinder,CRT,PILER-CR
GTATCAATCCCCTTACGGGGCTAAGTGGTTTGCAACTAAACACGCTAGGCATTGGGGACTGCTTAAAAAAGGGTTGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACTTGCGAGCGTTGCTACCAAACTTGCACCCGCTGTGGTGTTGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACCGTGAGGGGTACAAGCCGGTAGGCGGTCCAGAGTGGGCGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACAAGTCAAAGGTGGAGTTTACCTGGTCTAACTATGCGGGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACCCCCCTCCCCTGCGCGGTATCCCGTGGCCTGCCGCCGGGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACTTCGCTTCAAGCCCGATGGAGAGGTGGACTCCACCTGGAGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACAAAGTGAACCTTAGAGACTTAATCAGGCGGTACTGGTGGGGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

>NZ_CP010822|9|9|1731966-1732521|CRISPRCasFinder
GTATCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TAAACACGCTAGGCATTGGGGACTGCTTAAAAAAGGGTT
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TTGCGAGCGTTGCTACCAAACTTGCACCCGCTGTGGT
GTTGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CGTGAGGGGTACAAGCCGGTAGGCGGTCCAGAGTGGGC
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	AAGTCAAAGGTGGAGTTTACCTGGTCTAACTATGCGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CCCCCTCCCCTGCGCGGTATCCCGTGGCCTGCCGCCGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TTCGCTTCAAGCCCGATGGAGAGGTGGACTCCACCTGGA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	AAAGTGAACCTTAGAGACTTAATCAGGCGGTACTGGTGGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

>NZ_CP010822|9|5|1731966-1732521|CRT
GTATCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TAAACACGCTAGGCATTGGGGACTGCTTAAAAAAGGGTT
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TTGCGAGCGTTGCTACCAAACTTGCACCCGCTGTGGT
GTTGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CGTGAGGGGTACAAGCCGGTAGGCGGTCCAGAGTGGGC
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	AAGTCAAAGGTGGAGTTTACCTGGTCTAACTATGCGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CCCCCTCCCCTGCGCGGTATCCCGTGGCCTGCCGCCGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TTCGCTTCAAGCCCGATGGAGAGGTGGACTCCACCTGGA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	AAAGTGAACCTTAGAGACTTAATCAGGCGGTACTGGTGGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

>NZ_CP010822|9|6|1732041-1732521|PILER-CR
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TTGCGAGCGTTGCTACCAAACTTGCACCCGCTGTGGT
GTTGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CGTGAGGGGTACAAGCCGGTAGGCGGTCCAGAGTGGGC
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	AAGTCAAAGGTGGAGTTTACCTGGTCTAACTATGCGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CCCCCTCCCCTGCGCGGTATCCCGTGGCCTGCCGCCGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TTCGCTTCAAGCCCGATGGAGAGGTGGACTCCACCTGGA
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	AAAGTGAACCTTAGAGACTTAATCAGGCGGTACTGGTGGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010822.1\|WP_003045267.1\|1721452_1722667_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP010822.1\|WP_155982870.1\|1740629_1742510_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|312526
NZ_CP010822.1\|WP_003045304.1\|1744915_1745746_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|237667
NZ_CP010822.1\|WP_003045269.1\|1722672_1723806_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP010822.1\|WP_003045289.1\|1735319_1735664_-\|CRISPR-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP010822.1\|WP_155982865.1\|1734253_1735303_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NZ_CP010822.1\|WP_003045302.1\|1744689_1744929_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|338835
NZ_CP010822.1\|WP_155982863.1\|1723903_1724566_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_CP010822.1\|WP_003045297.1\|1738823_1740578_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP010822.1\|WP_003045282.1\|1729010_1730231_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|179745
NZ_CP010822.1\|WP_003045293.1\|1736534_1737731_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NZ_CP010822.1\|WP_003045284.1\|1730772_1731750_-\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
NZ_CP010822.1\|WP_003045283.1\|1730243_1730795_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP010822.1\|WP_003045273.1\|1724580_1724952_+\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|119346
NZ_CP010822.1\|WP_003045295.1\|1737727_1738834_-\|CRISPR-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NZ_CP010822.1\|WP_003045275.1\|1724948_1726679_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225265
NZ_CP010822.1\|WP_003045280.1\|1727544_1728978_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236327
NZ_CP010822.1\|WP_003045265.1\|1719837_1721379_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP010822.1\|WP_003045291.1\|1735660_1736521_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP010822.1\|WP_155982864.1\|1732995_1734252_+\|TIGR02221-family-CRISPR-associated-protein	csx1	pfam09455_csx1_CAS-III	gnl\|CDD\|378186

Protein	Function_ID	Function_description	E-value
NZ_CP010822.1\|WP_003045267.1\|1721452_1722667_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	4.04726e-160
NZ_CP010822.1\|WP_155982870.1\|1740629_1742510_-\|hypothetical-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	6.48093e-06
NZ_CP010822.1\|WP_003045304.1\|1744915_1745746_-\|DnaJ-domain-containing-protein	gnl\|CDD\|237667	PRK14299, PRK14299, chaperone protein DnaJ; Provisional.	1.46939e-143
NZ_CP010822.1\|WP_003045269.1\|1722672_1723806_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.05748e-20
NZ_CP010822.1\|WP_003045289.1\|1735319_1735664_-\|CRISPR-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	1.91255e-28
NZ_CP010822.1\|WP_155982865.1\|1734253_1735303_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	4.2823e-53
NZ_CP010822.1\|WP_003045302.1\|1744689_1744929_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|338835	pfam13591, MerR_2, MerR HTH family regulatory protein.	2.44049e-10
NZ_CP010822.1\|WP_155982863.1\|1723903_1724566_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	5.07948e-108
NZ_CP010822.1\|WP_003045297.1\|1738823_1740578_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	3.46096e-118
NZ_CP010822.1\|WP_003045282.1\|1729010_1730231_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|179745	PRK04135, PRK04135, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP010822.1\|WP_003045293.1\|1736534_1737731_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.89002e-28
NZ_CP010822.1\|WP_003045284.1\|1730772_1731750_-\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	3.01272e-57
NZ_CP010822.1\|WP_003045283.1\|1730243_1730795_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.9536e-28
NZ_CP010822.1\|WP_003045273.1\|1724580_1724952_+\|ASCH-domain-containing-protein	gnl\|CDD\|119346	cd06554, ASCH_ASC-1_like, ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.	5.38637e-19
NZ_CP010822.1\|WP_003045295.1\|1737727_1738834_-\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	7.67045e-92
NZ_CP010822.1\|WP_003045275.1\|1724948_1726679_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225265	COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only].	0
NZ_CP010822.1\|WP_003045280.1\|1727544_1728978_-\|proline--tRNA-ligase	gnl\|CDD\|236327	PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional.	0
NZ_CP010822.1\|WP_003045265.1\|1719837_1721379_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	9.82826e-142
NZ_CP010822.1\|WP_003045291.1\|1735660_1736521_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	5.08479e-99
NZ_CP010822.1\|WP_155982864.1\|1732995_1734252_+\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	4.00904e-64

>NZ_CP010822.1|WP_003045284.1|1730772_1731750_-|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MDGNAPDPKYWEKMRLVAEVLKAVEGPIYIATHVDPDGDAIGSSLGLYRALKALGKDARWVAEPPRFLRFLPKEDEYSDPVEKLPPGATLVALDSAEPSRVAGVPVEGFVINIDHHGTNPRFGQIAVVDPSKAATAQMVKDLIDLLGVAWTEEIATPVLTGILTDTGNFRFANTTPEVLQVAAELVGYGVRLPELTDRLQFRPPSYFRLMGQVLSTVAFHFGGLVVTAHLPEDAQRTEEDSDDFVGLIRYVEGSVVSVFLRRREEGVKVSIRSRGGVSAQNIALRLGGGGHVPAAGATLKDVDLDRAYEMVLEAVAEELRRAGYL
>NZ_CP010822.1|WP_003045283.1|1730243_1730795_+|Uma2-family-endonuclease
MIRHRLSLEEFQALLEKAPEGARLELLDGEVYEMAPIGSGHASLVTYLAKQLERLYGDRALVYVQNPLRLSQHSLPQPDLALLKPREDFYRARLPEPGDTLLVVEVSFSSRELDLEVKLPLYAQGGIPEVWLVEETGTLEVYREPRGSHFRHRLIVEPGEEVAPLLLAHPLLRWDPPRGTPPA
>NZ_CP010822.1|WP_003045282.1|1729010_1730231_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MDLFPVFKELAQKSESKIVLVVLDGVGGLPLKPGGPTELEAALTPNLDALAQESALGLLTPVYPGLAPGSGPGHLALFGYDPFRYLVGRGALSALGLGADFQEGDVALRGNFATLAPDGTVLDRRAGRPSTEENARVIARLKEATPRVEDVEVHFYTESEHRFLVILRGQGLSDQVTDTDPQKPGLKPLPARALSPEAERTARVLNLLTERIREALKDEPRLNGALFRGASKRPSFPKMEEVYGLKAAAIASYPMYKGLASLVGMDVLPVEGEGDALPGKIQALRDNWDQYDFFYFHVKKTDAMGEDGDFRGKVEKIELFDAILPEILALGPTVLAITGDHSTPALLKAHSWHPVPLLLKAPYLRADEAGRFTEKEAQKGSLGHLRGVELMPLLLAHAGRLAKYGA
>NZ_CP010822.1|WP_003045280.1|1727544_1728978_-|proline--tRNA-ligase
MAKEKGLTPQSVDFSEWYLEVIQKAELADYGPVRGTIVLRPYGYAIWENIQKTLDQMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIQSYRDLPQLLNQWGNVVRWELRTRPFLRTSEFLWQEGHTAHATREEAEAEVRRMLGIYAKLARDYAAIPVIEGLKTEKEKFAGAVYTTTIEAMMRDGKALQSGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIVMTHGDDKGLILPPRLAPIQVVIVPIYREENREKVLEAAFALKKDLLARGLRAHLDDRDQYTPGYKFHEWELKGVPYRVELGPKDLEVGQAVLASRLGGKETLPLAALPEALPERLDAFHQALYQRALDFQRARTRKVESYEAFKEAVQEGFALAFHCGDKACEKQIQEETTATSRCVPFEAEPEEGFCVRCGRPSAYGKRVVFAKAY
>NZ_CP010822.1|WP_003045275.1|1724948_1726679_-|GNAT-family-N-acetyltransferase
MRVLGRRVYWRWYGEVLLSGNVVLRMTGDAAKWLCPGDSVRLSTEFKKPLLGFDEYALWGRFPLWPPFAKDLEHVREGPLGGEAYRYRLRAREAQFEADFEAIAELEQYHYASEKEVVALWVCPRCGQTLAANSKPLCQCGGEARLKEIKGSTPASRFLVLELKERLPFEPRILGYLRLDPPIPRMHRRTPDGRLERDIRERIFPPDWFHPTFEGGEDWEKALDQVETAAARIARVVVHPDYRSEGLGALLVQVALDWVRERGAPEGRRAKHLVYTIAQMARYHPFFEKVGFRYLFDTASGRPVLFYPLSEEAKEHLEHFLKEDPYARAHGGRLFQKSYGQVAGLPGPIRLEDVYKGYRSLLDLKGLSLEVEEVLSAFGVKARRVERAVLRGADLEVPPRSLVVLAGASGAGKTTLLRLLLGEPPDAGRVLLPGGRVAAYIPGEVEVPLGELPLLERLYREMGEVRAAIEVLNRVGLSDAVLYRARPQELSTGQRERFRLALLLALRPDLLLIDEFAAHLDVPTARRVALGLGKLCREAGITLVAATHRPEVHQALDPDLTVFVGYGGLVVVPRKG
>NZ_CP010822.1|WP_003045273.1|1724580_1724952_+|ASCH-domain-containing-protein
MERPKLGLIVREPYASYIVDGKKTWEIRKRVARHRGPLGIVSRGLLIGQADLVGVEGPFSVEELLPHFAKHLAEEAFLRAYAQGEPLYAWVLENAFRYEKPLFVPRRPGRVMFVDLTETFEEG
>NZ_CP010822.1|WP_155982863.1|1723903_1724566_-|endonuclease-III
MEAVACPKEGEKAKKARASEILKALKALYPGARTELKHENPFQLLVATVLSAQATDKSVNEATPALFARFPDAKALAAATPEEVEPYIRKIGLYRTKARNLVALARRLLEDYGGEVPRDKEALMRLPGVGWKTATVVLGAAFGVPGIAVDTHVARLARRLCLSEARTPEKIAEDLEALFPKDHWVFVHHALVLHGRYVCTARRPRCGACPLAPHCPSRQV
>NZ_CP010822.1|WP_003045269.1|1722672_1723806_-|MFS-transporter
MHKLSPAYRFLLAGFLWSFGGNLVYFFLNFHLEALGFSRQAIGLAQAVVLLSGVAFALPLAYLIPRLGFLRSLHLAFFLTLPAVLLLGLGLLVFPSLALYGLAGALLQGAAAPLLARLVPEGRRVAFFSLQAALTTMSGFFSTLLAGYLSELFGARWVLLFALPFFLLGLPFVWGLPVVEGERRPLRLSRRLFLWLRLLLPQVVIGFGAGLVIPFLNLYLKEKFGLTYGTTGLIFALSSLATGAAMLLQPLLVQRLGRLGAIVFVQALSLPFLAALAWAPWLPLVTLALLIRGALMNAAGPVYAALVMDYLDEEERPGFFLVESALWSLLFAMASALSGMVQGAMGLKAFDYLFGVTLALYALGIALWPWAFRKRVD
>NZ_CP010822.1|WP_003045267.1|1721452_1722667_-|molybdopterin-molybdotransferase-MoeA
MRTNLSVEEALSLVLEGARGELGVEELPLGEAYGRVLAEDLASLVDHPDQDDTAIDGYACREADTLLASPERPVRLRVIGEAPAGKPFLGEVGQGEAVAVYTGAPIPRGADAVIRVEDTRREGAYVLLLAPASPKDIRPKGDDLRRGEVYLRRGDLLTPGRLGLAAAMGHPRVRVYRRPRVGILSTGDEVVEPGEPLPYGGVYNSNAYSLLGLVLEAGGEPVLLGKVPDSPEAVMAKLEEAGHLDLLLTSGGVSMGEYDVVRKVLEEKGEVVFWKVRQQPGGPLLFARLGGLPVLGLPGNPVSSMVTFFLYGRPFLFRLLKRTEPPYGTLKARAETPFRGAKGKKVFRRGVLSLAQGPSVRTTGNQSSGVLRSMAFGNALVVLPPDQDAREGEEVEVIPLTFVP
>NZ_CP010822.1|WP_003045265.1|1719837_1721379_-|DEAD/DEAH-box-helicase
MEFKDFPLKDEIKEALYGRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAQRLEASRQRGRKPRALVLTPTRELALQVASEVAALAPHLKVVPVYGGTGYGKQKEELQKGADVVVATPGRALDYLRQGVLDLSEVEIAVLDEADEMLSMGFEEEVEAILAATPPSRQTLLFSATLPTWARRLAERYMKSPVVINVVKEEGVTYQEEAILAPTDRLALLSDLLYVKAPKRAIVFTKTKAETEEVATGLLRLGHAARAIHGDLSQADRERVMRAFREGEVRVLVATDVAARGLDIPEVDLVVHYRLPDKPETYQHRSGRTGRAGRGGEVVILYGPREKRELAELERAVGRPFKRVNPPTPEEVLEAKWQHLLARLARVPEKDYKLYLDFAGRLFAEGRVEVVAALMALILGGAPKERSLLTGEEGWITLKATGARLTLPRLVALLKERGLEVGKIAEAEEGFYLDLRPQDLAKAAEVQGLKLERAKRVERVLETASRPRRPARSF
>NZ_CP010822.1|WP_155982864.1|1732995_1734252_+|TIGR02221-family-CRISPR-associated-protein
MLKAGQVPAMLHAGSENMSKVILSFLGTGNYARTRYQLDGQLYPDDPTPYTQEALLKRYEEEGWVLKVLMTEEAEKKHKEALAERVKYEPVPIPSGHTEEQLWRIFNAIVDSIPEGAELIMDVSHGFRSQPILALAAVQFLQVVKGVRVHRILYGFYEPTKPEGNFFDLTNFLRLMEWTQATRDLLEHGEGLRLRKLLREIHSHSYQEEGPKAKKLASVGEALDKVEDALDLLRVAEALSSAQELLKHLEAASEDVAQLPRSMPLGLLLGRMRERYRPLAAKDPFSPEGLRAQGEMLHLLLQTKRYAQAITLARELLVTLVCVRQNWDPLEERGVAEAWLNAKVKVRKKKDSTAEDSQALRLISLWEKTADLRNDVAHAAMRENPAGARKLAQSVEDVCNQVRALLEEKTTLPGMRQE
>NZ_CP010822.1|WP_155982865.1|1734253_1735303_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MEKSRRKALQGISLPRDEEPHRGLWLDKFLVSTERKDTEAKRSLVREVAGIPEPKEYQGFFGRYRKALEALGAELREAETLSRLVVGLGGEGVLETSLTLHRTYGVPYIPGSALKGLASRYAHLYLEGEAWRRDLANFQRGEAQAALFGTTEEQGLVVFFDALPLPGKWELHPDILNPHHPAYYRGEGEPPADWDSPTPVPFLSVTGTFLLALAPAPGVDREAARPWLRAAWQILAWALREEGVGAKTSSGYGRMALAEPGVPEAGSGSPAPSSALEGLLTRVRSLSYRDVPHFLTSQAEAILGLSAEEAQALRQALEGKGFLRNREDLKRWLKEHSGLERVYAKLGLA
>NZ_CP010822.1|WP_003045289.1|1735319_1735664_-|CRISPR-associated-protein-Cmr5
MRTRAQRWAEDAYNRVKARAQGDKAQKYKDMALKFPVLVRQAGLSQALAFVASRGEEGHKNLVGDLAQTLGFKDLEALAEEARNAELPAYLRLTREVLGAAEWYKRFAQALIED
>NZ_CP010822.1|WP_003045291.1|1735660_1736521_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MKHAALVFLHALSPLHAGTGQGIGAIDLPIAREKATGIPYLPGSSLKGVLRDRAASWDRDTRFAVFGPDPESASDHAGAVQVGDAKLLLLPVRSVYGVFALVTSPYLLVRFRREAEMVGLGTPETLEVQNPGQALLAPGSRVLGDGGKVYLEDLDLEAREEAGARAWEDWLAQRLEAPVKGRLVVVHDDLMGYLLETATEVVARIRLDDETKTVARGALWYEESLPTESVLYSLLRTEDSRRKGQNLPAEAILAMVKGLLEGPVQLGGKATVGRGLCAFKVVGGQA
>NZ_CP010822.1|WP_003045293.1|1736534_1737731_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MSRKARAFEEALAPRRKEEKGALLRPNGARVLTWERTYTLITPLFGGGVEPREADPVSVVRATEVRGQLRFWWRALRGWQAKGSLEELQNLESALFGSAGEGGASSVAVEVEVLERGEDVEVAQYGRAVQWYLGFPLRGEGGWAPVKKGVAFRLRLRFPERVKSLNLAEELEAALWAWETFGGIGARTRRGFGALLREGASPPTEKEIRERLGRYSRQGGWPEGVPHLTPQSLVRVVPLSWKELAERYQAFRQARPGGNSRSPGRSLWPEPDEIRRLTGRHAPTHPPRHPVRKFPRAHFGLPIIFHFKDRGDPPDTTLKLPEAERRASPLIFRPLGEGQKPCVVAVLEGDRFPEKKLLLEDRNRRTWEVDPRLTPEEAGKISPLRGQVDPVRAFVESL
>NZ_CP010822.1|WP_003045295.1|1737727_1738834_-|CRISPR-associated-protein-Cmr3
MLIEPRDPLIVRDGRPFTNNPGARAKSLPFPLPQTLAGVYRTRRALLEGLPLPERAEEVLRWGLRGPLLAEEGKEGWRLLVPRPLDALRLGGTVYPLRPLEFPEGAGTNLPEGLRPVGLPSPSLKEKPTPLEAFWYWESFLKWLLEDAPERFSPEGHGGPTPEVRTHVALDPSTQTAREGFLFQTSGLEFSRKLQGPAQGGIRRLALVLWPEKELEGLFPLGGERRLAFWQKGGPGLPPLPEALVERLARSRAARILFLTPAFLEGAYLPKGGAFGGAQVVAAVVGRPQVVSGWDLKEGKPKPSRRAVPAGSVYFVRLPEAWGEGEVRAWAEGIWFQNLSDGEQDRRDGFGLAALGVWDGKLRRWEGA
>NZ_CP010822.1|WP_003045297.1|1738823_1740578_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MDRLLAIALGPVQEFIATARRTRDLFAGSRLLSEAASCAAKALAKEVGVENLIFPAPQDENQLEKLAEAGIPNVLLLRVPEGKDPGKLGEAALEAAKDCLRARAEEVFAPRKAHLLWDEALSQVKDLLEGYYAYVPLEDYPRSRERLMALLAARKNTRDFAPVAWGSAAYKSSLDGARESVLRLPQEGADRLRVRLGLRPGEYLSGPDLLKRWWQTQHPFLSTTHVAALPFFEGVREAGQEGVLQDALKDLAQLAGEEARAGIYHPVLEGTPFAQWDVRLLYESRLEEFPAFAEDPELLEKAKARLRELWRALSQRGVKVPPGSYYALLHADGDRMGETLDRLRTPEEHRRFSNALALGFAAEVKRIVEAHGGALVYSGGDDVLALLPLHKALMAAKALAERFQKVMAPFGGPGKAPSLSVGLAVVHHLEPLQDALDLARRAEKRAKEGEPKRNALCVAYSPRSGSERMVRGRWDEDPRLTRRLLRYADLLRAGEVPSRAGYELWALVQEVGEALPGEALVAEALRILGRRAMEPKYQEELGRWVQTGEDVRRLAEELLMARPFAEALDQAGVPVESREVWDAH
>NZ_CP010822.1|WP_155982870.1|1740629_1742510_-|hypothetical-protein
MRDPVYLSLLGNDPAPAYLGLKMVEQRARGVARAIFYTLRVWNEAYKAKRCALFALLEEKGIPFEDRPLSEAAIEEEDAEEAWVNLTGGDKFNAVRLLGHWRRPGARVFLLEGHRLLEAPKALFLWPEEEVLSLEAEALTLEEYARLYLEPLGETWEEAPPPPAFPSGARAARLPQRGGGLFVVYRGQPYWFKPFLGDEREEMHREAIAHFAKEARELGGQLCLPVVPYHKARLRSYHPNEQDNVLSRWHTWAEENGVRLVTPRAPLEREVASLPQENLPPKPLPPPRGPVLLALVSEQATPLYGAYLYARPQEVYLLTTPEMADRLGWAEAFFRDKGTQVRSGRLSGPWALWEVRDLLAPVVEEALRQGHPVHANLNGGTHAMAMGLYLALKEGARAHYLERDRLCFLDGAEAPVPWGQGRPQDLLALRGYRLKESFPSLQPNPEVLTVAEEILRRWDEVQASWETSPLVDRFFSLLAQRFGQRFSPNERGSLKGLPLEYAVYAHLQAHLASRGGVAVMGGHVVPLKGNAALDDQLTEVDGLALYGGALWLVECKPDARQLKRRARIMENLVNSVGGSHAKGLMVARSWKGSSPPQGSNLVYMAFEAGEGVFRFPQDLDKALERP
>NZ_CP010822.1|WP_003045302.1|1744689_1744929_-|MerR-family-transcriptional-regulator
MLARSAWLSLEALEEHGLSRSAVRAYVEIGFVEPLEVGGTWYFRREDLLRMAKAERIRKDLGANLIGAALVVEILERSQ
>NZ_CP010822.1|WP_003045304.1|1744915_1745746_-|DnaJ-domain-containing-protein
MKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVNKSPEAEEKFKEINEAYAILSDPEKRKIYDTYGTTTPPPPPPPGGYDFSGFDVEDFSDFFQELFGGGLFGRSRRPRRGRDVRAEVALTLEEAFHGGERVLEVGGRRVSVRIPPGVQDGATLRVPGMGGPGDPPGDLVLTVRLLPHPRFRREGQDLYATLDVPAPIAVVGGKVRAMTLEGPVEVTVPPRTQAGRKLRLKGKGFPGPTGRGDLYLEVRLTIPERLTPEEEALWKRLAEAYYARA

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Crispr_ID: NZ_CP010822_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010822_10

1742839-1743245

TypeIII

III-A

Consensus_repeat	Method
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CRISPRCasFinder
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	CRT
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	PILER-CR

5 spacers

cas10,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,csx1

The CRISPR arrays of NZ_CP010822_10

>merge|NZ_CP010822|10|1742839-1743245|CRISPRCasFinder,CRT,PILER-CR
GTATCAATCCCCTTACGGGGCTATGTGGTTTGCAACTCCTGCCCGAGAGGGCCCAGGAGGAGTTTGACCGCTGGCTGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACATGATGAGCGCCACGGAAACCGCCGCCAAGGTGCTCACGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACTTAATCTCTACCAATCACCCCATGTGGAAAAGGCTCATGGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACAGGAAGTCCGTCAGCACCCCTTCTGCCCAAGGTGGGGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAACGGGGTGCTTTTCCTCCGCCTACTCGGAAGTAGCCAGGTGTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

>NZ_CP010822|10|10|1742839-1743245|CRISPRCasFinder
GTATCAATCCCCTTACGGGGCTATGTGGTTTGCAAC	TCCTGCCCGAGAGGGCCCAGGAGGAGTTTGACCGCTGGCT
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	ATGATGAGCGCCACGGAAACCGCCGCCAAGGTGCTCAC
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TTAATCTCTACCAATCACCCCATGTGGAAAAGGCTCATG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	AGGAAGTCCGTCAGCACCCCTTCTGCCCAAGGTGGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	GGGGTGCTTTTCCTCCGCCTACTCGGAAGTAGCCAGGT
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

>NZ_CP010822|10|6|1742839-1743245|CRT
GTATCAATCCCCTTACGGGGCTATGTGGTTTGCAAC	TCCTGCCCGAGAGGGCCCAGGAGGAGTTTGACCGCTGGCT
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	ATGATGAGCGCCACGGAAACCGCCGCCAAGGTGCTCAC
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TTAATCTCTACCAATCACCCCATGTGGAAAAGGCTCATG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	AGGAAGTCCGTCAGCACCCCTTCTGCCCAAGGTGGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	GGGGTGCTTTTCCTCCGCCTACTCGGAAGTAGCCAGGT
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

>NZ_CP010822|10|7|1742915-1743245|PILER-CR
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	ATGATGAGCGCCACGGAAACCGCCGCCAAGGTGCTCAC
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	TTAATCTCTACCAATCACCCCATGTGGAAAAGGCTCATG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	AGGAAGTCCGTCAGCACCCCTTCTGCCCAAGGTGGG
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC	GGGGTGCTTTTCCTCCGCCTACTCGGAAGTAGCCAGGT
GTCGCAATCCCCTTACGGGGCTAAGTGGTTTGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010822.1\|WP_003049348.1\|1750241_1750535_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP010822.1\|WP_155982870.1\|1740629_1742510_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|312526
NZ_CP010822.1\|WP_060474027.1\|1748323_1750198_+\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NZ_CP010822.1\|WP_003045304.1\|1744915_1745746_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|237667
NZ_CP010822.1\|WP_003045289.1\|1735319_1735664_-\|CRISPR-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP010822.1\|WP_003049352.1\|1751292_1751973_-\|endonuclease-V	unknown	unknown	gnl\|CDD\|143472
NZ_CP010822.1\|WP_003045297.1\|1738823_1740578_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP010822.1\|WP_003049354.1\|1751973_1752846_-\|bifunctional-glucose-6-phosphate/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|375780
NZ_CP010822.1\|WP_003045293.1\|1736534_1737731_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NZ_CP010822.1\|WP_060474026.1\|1746347_1748198_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP010822.1\|WP_003045291.1\|1735660_1736521_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP010822.1\|WP_003045284.1\|1730772_1731750_-\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
NZ_CP010822.1\|WP_003045283.1\|1730243_1730795_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP010822.1\|WP_003049350.1\|1750657_1751287_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP010822.1\|WP_003045295.1\|1737727_1738834_-\|CRISPR-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NZ_CP010822.1\|WP_040684678.1\|1752865_1753651_+\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|380413
NZ_CP010822.1\|WP_003045305.1\|1745749_1746289_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|366423
NZ_CP010822.1\|WP_155982865.1\|1734253_1735303_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NZ_CP010822.1\|WP_003045302.1\|1744689_1744929_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|338835
NZ_CP010822.1\|WP_155982864.1\|1732995_1734252_+\|TIGR02221-family-CRISPR-associated-protein	csx1	pfam09455_csx1_CAS-III	gnl\|CDD\|378186

Protein	Function_ID	Function_description	E-value
NZ_CP010822.1\|WP_003049348.1\|1750241_1750535_-\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	4.77396e-34
NZ_CP010822.1\|WP_155982870.1\|1740629_1742510_-\|hypothetical-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	6.48093e-06
NZ_CP010822.1\|WP_060474027.1\|1748323_1750198_+\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP010822.1\|WP_003045304.1\|1744915_1745746_-\|DnaJ-domain-containing-protein	gnl\|CDD\|237667	PRK14299, PRK14299, chaperone protein DnaJ; Provisional.	1.46939e-143
NZ_CP010822.1\|WP_003045289.1\|1735319_1735664_-\|CRISPR-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	1.91255e-28
NZ_CP010822.1\|WP_003049352.1\|1751292_1751973_-\|endonuclease-V	gnl\|CDD\|143472	cd06559, Endonuclease_V, Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.	3.27842e-79
NZ_CP010822.1\|WP_003045297.1\|1738823_1740578_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	3.46096e-118
NZ_CP010822.1\|WP_003049354.1\|1751973_1752846_-\|bifunctional-glucose-6-phosphate/mannose-6-phosphate-isomerase	gnl\|CDD\|375780	pfam18353, PG_isomerase_N, Phosphoglucose isomerase N-terminal domain. This domain is found in the N-terminal region of glucose-6-phosphate isomerase-like protein, just before the phospho-glucose isomerase C-terminal SIS domain (pfam10432).	6.51943e-38
NZ_CP010822.1\|WP_003045293.1\|1736534_1737731_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.89002e-28
NZ_CP010822.1\|WP_060474026.1\|1746347_1748198_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP010822.1\|WP_003045291.1\|1735660_1736521_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	5.08479e-99
NZ_CP010822.1\|WP_003045284.1\|1730772_1731750_-\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	3.01272e-57
NZ_CP010822.1\|WP_003045283.1\|1730243_1730795_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.9536e-28
NZ_CP010822.1\|WP_003049350.1\|1750657_1751287_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	3.41567e-55
NZ_CP010822.1\|WP_003045295.1\|1737727_1738834_-\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	7.67045e-92
NZ_CP010822.1\|WP_040684678.1\|1752865_1753651_+\|mannose-6-phosphate-isomerase	gnl\|CDD\|380413	cd07010, cupin_PMI_type_I_N_bac, Phosphomannose isomerase in bacteria and archaea, N-terminal cupin domain. This subfamily contains type I phosphomannose isomerase (PMI; E.C. 5.3.1.8; also known as mannose-6-phosphate isomerase) found in many bacteria (e.g. Bacillus subtilis) and archaea. PMI catalyzes the reversible isomerization of fructose-6-phosphate (F6P) and mannose-6-phosphate (M6P), the first committed step in the synthesis of mannosylated glycoproteins. The active site, located within the N-terminal jelly roll-like beta-barrel cupin fold, contains a single essential zinc atom and forms a deep, open cavity large enough to contain M6P or F6P. PMI type I also has a C-terminal beta-barrel fold which has diverged considerably from the N-terminal domain and is not included here. This subfamily does not contain an alpha helical domain that exists in eukaryotic and some prokaryotic PMIs. F6P is a substrate for glycolysis and gluconeogenesis, while M6P is a substrate for production of activated mannose donor guanosine 5'-diphosphate D-mannose, an important precursor of mannosylated biomolecules such as glycoproteins, bacterial exopolysaccharides and fungal cell wall components. PMI is also essential for survival, virulence and possibly pathogenicity of some bacteria and protozoan parasites, as well as for cell wall integrity of certain yeasts. Thus, PMI is a potential target against fungal infections causing serious illness or death.	2.14756e-67
NZ_CP010822.1\|WP_003045305.1\|1745749_1746289_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|366423	pfam01025, GrpE, GrpE.	1.84458e-48
NZ_CP010822.1\|WP_155982865.1\|1734253_1735303_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	4.2823e-53
NZ_CP010822.1\|WP_003045302.1\|1744689_1744929_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|338835	pfam13591, MerR_2, MerR HTH family regulatory protein.	2.44049e-10
NZ_CP010822.1\|WP_155982864.1\|1732995_1734252_+\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	4.00904e-64

>NZ_CP010822.1|WP_155982870.1|1740629_1742510_-|hypothetical-protein
MRDPVYLSLLGNDPAPAYLGLKMVEQRARGVARAIFYTLRVWNEAYKAKRCALFALLEEKGIPFEDRPLSEAAIEEEDAEEAWVNLTGGDKFNAVRLLGHWRRPGARVFLLEGHRLLEAPKALFLWPEEEVLSLEAEALTLEEYARLYLEPLGETWEEAPPPPAFPSGARAARLPQRGGGLFVVYRGQPYWFKPFLGDEREEMHREAIAHFAKEARELGGQLCLPVVPYHKARLRSYHPNEQDNVLSRWHTWAEENGVRLVTPRAPLEREVASLPQENLPPKPLPPPRGPVLLALVSEQATPLYGAYLYARPQEVYLLTTPEMADRLGWAEAFFRDKGTQVRSGRLSGPWALWEVRDLLAPVVEEALRQGHPVHANLNGGTHAMAMGLYLALKEGARAHYLERDRLCFLDGAEAPVPWGQGRPQDLLALRGYRLKESFPSLQPNPEVLTVAEEILRRWDEVQASWETSPLVDRFFSLLAQRFGQRFSPNERGSLKGLPLEYAVYAHLQAHLASRGGVAVMGGHVVPLKGNAALDDQLTEVDGLALYGGALWLVECKPDARQLKRRARIMENLVNSVGGSHAKGLMVARSWKGSSPPQGSNLVYMAFEAGEGVFRFPQDLDKALERP
>NZ_CP010822.1|WP_003045297.1|1738823_1740578_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MDRLLAIALGPVQEFIATARRTRDLFAGSRLLSEAASCAAKALAKEVGVENLIFPAPQDENQLEKLAEAGIPNVLLLRVPEGKDPGKLGEAALEAAKDCLRARAEEVFAPRKAHLLWDEALSQVKDLLEGYYAYVPLEDYPRSRERLMALLAARKNTRDFAPVAWGSAAYKSSLDGARESVLRLPQEGADRLRVRLGLRPGEYLSGPDLLKRWWQTQHPFLSTTHVAALPFFEGVREAGQEGVLQDALKDLAQLAGEEARAGIYHPVLEGTPFAQWDVRLLYESRLEEFPAFAEDPELLEKAKARLRELWRALSQRGVKVPPGSYYALLHADGDRMGETLDRLRTPEEHRRFSNALALGFAAEVKRIVEAHGGALVYSGGDDVLALLPLHKALMAAKALAERFQKVMAPFGGPGKAPSLSVGLAVVHHLEPLQDALDLARRAEKRAKEGEPKRNALCVAYSPRSGSERMVRGRWDEDPRLTRRLLRYADLLRAGEVPSRAGYELWALVQEVGEALPGEALVAEALRILGRRAMEPKYQEELGRWVQTGEDVRRLAEELLMARPFAEALDQAGVPVESREVWDAH
>NZ_CP010822.1|WP_003045295.1|1737727_1738834_-|CRISPR-associated-protein-Cmr3
MLIEPRDPLIVRDGRPFTNNPGARAKSLPFPLPQTLAGVYRTRRALLEGLPLPERAEEVLRWGLRGPLLAEEGKEGWRLLVPRPLDALRLGGTVYPLRPLEFPEGAGTNLPEGLRPVGLPSPSLKEKPTPLEAFWYWESFLKWLLEDAPERFSPEGHGGPTPEVRTHVALDPSTQTAREGFLFQTSGLEFSRKLQGPAQGGIRRLALVLWPEKELEGLFPLGGERRLAFWQKGGPGLPPLPEALVERLARSRAARILFLTPAFLEGAYLPKGGAFGGAQVVAAVVGRPQVVSGWDLKEGKPKPSRRAVPAGSVYFVRLPEAWGEGEVRAWAEGIWFQNLSDGEQDRRDGFGLAALGVWDGKLRRWEGA
>NZ_CP010822.1|WP_003045293.1|1736534_1737731_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MSRKARAFEEALAPRRKEEKGALLRPNGARVLTWERTYTLITPLFGGGVEPREADPVSVVRATEVRGQLRFWWRALRGWQAKGSLEELQNLESALFGSAGEGGASSVAVEVEVLERGEDVEVAQYGRAVQWYLGFPLRGEGGWAPVKKGVAFRLRLRFPERVKSLNLAEELEAALWAWETFGGIGARTRRGFGALLREGASPPTEKEIRERLGRYSRQGGWPEGVPHLTPQSLVRVVPLSWKELAERYQAFRQARPGGNSRSPGRSLWPEPDEIRRLTGRHAPTHPPRHPVRKFPRAHFGLPIIFHFKDRGDPPDTTLKLPEAERRASPLIFRPLGEGQKPCVVAVLEGDRFPEKKLLLEDRNRRTWEVDPRLTPEEAGKISPLRGQVDPVRAFVESL
>NZ_CP010822.1|WP_003045291.1|1735660_1736521_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MKHAALVFLHALSPLHAGTGQGIGAIDLPIAREKATGIPYLPGSSLKGVLRDRAASWDRDTRFAVFGPDPESASDHAGAVQVGDAKLLLLPVRSVYGVFALVTSPYLLVRFRREAEMVGLGTPETLEVQNPGQALLAPGSRVLGDGGKVYLEDLDLEAREEAGARAWEDWLAQRLEAPVKGRLVVVHDDLMGYLLETATEVVARIRLDDETKTVARGALWYEESLPTESVLYSLLRTEDSRRKGQNLPAEAILAMVKGLLEGPVQLGGKATVGRGLCAFKVVGGQA
>NZ_CP010822.1|WP_003045289.1|1735319_1735664_-|CRISPR-associated-protein-Cmr5
MRTRAQRWAEDAYNRVKARAQGDKAQKYKDMALKFPVLVRQAGLSQALAFVASRGEEGHKNLVGDLAQTLGFKDLEALAEEARNAELPAYLRLTREVLGAAEWYKRFAQALIED
>NZ_CP010822.1|WP_155982865.1|1734253_1735303_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MEKSRRKALQGISLPRDEEPHRGLWLDKFLVSTERKDTEAKRSLVREVAGIPEPKEYQGFFGRYRKALEALGAELREAETLSRLVVGLGGEGVLETSLTLHRTYGVPYIPGSALKGLASRYAHLYLEGEAWRRDLANFQRGEAQAALFGTTEEQGLVVFFDALPLPGKWELHPDILNPHHPAYYRGEGEPPADWDSPTPVPFLSVTGTFLLALAPAPGVDREAARPWLRAAWQILAWALREEGVGAKTSSGYGRMALAEPGVPEAGSGSPAPSSALEGLLTRVRSLSYRDVPHFLTSQAEAILGLSAEEAQALRQALEGKGFLRNREDLKRWLKEHSGLERVYAKLGLA
>NZ_CP010822.1|WP_155982864.1|1732995_1734252_+|TIGR02221-family-CRISPR-associated-protein
MLKAGQVPAMLHAGSENMSKVILSFLGTGNYARTRYQLDGQLYPDDPTPYTQEALLKRYEEEGWVLKVLMTEEAEKKHKEALAERVKYEPVPIPSGHTEEQLWRIFNAIVDSIPEGAELIMDVSHGFRSQPILALAAVQFLQVVKGVRVHRILYGFYEPTKPEGNFFDLTNFLRLMEWTQATRDLLEHGEGLRLRKLLREIHSHSYQEEGPKAKKLASVGEALDKVEDALDLLRVAEALSSAQELLKHLEAASEDVAQLPRSMPLGLLLGRMRERYRPLAAKDPFSPEGLRAQGEMLHLLLQTKRYAQAITLARELLVTLVCVRQNWDPLEERGVAEAWLNAKVKVRKKKDSTAEDSQALRLISLWEKTADLRNDVAHAAMRENPAGARKLAQSVEDVCNQVRALLEEKTTLPGMRQE
>NZ_CP010822.1|WP_003045284.1|1730772_1731750_-|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MDGNAPDPKYWEKMRLVAEVLKAVEGPIYIATHVDPDGDAIGSSLGLYRALKALGKDARWVAEPPRFLRFLPKEDEYSDPVEKLPPGATLVALDSAEPSRVAGVPVEGFVINIDHHGTNPRFGQIAVVDPSKAATAQMVKDLIDLLGVAWTEEIATPVLTGILTDTGNFRFANTTPEVLQVAAELVGYGVRLPELTDRLQFRPPSYFRLMGQVLSTVAFHFGGLVVTAHLPEDAQRTEEDSDDFVGLIRYVEGSVVSVFLRRREEGVKVSIRSRGGVSAQNIALRLGGGGHVPAAGATLKDVDLDRAYEMVLEAVAEELRRAGYL
>NZ_CP010822.1|WP_003045283.1|1730243_1730795_+|Uma2-family-endonuclease
MIRHRLSLEEFQALLEKAPEGARLELLDGEVYEMAPIGSGHASLVTYLAKQLERLYGDRALVYVQNPLRLSQHSLPQPDLALLKPREDFYRARLPEPGDTLLVVEVSFSSRELDLEVKLPLYAQGGIPEVWLVEETGTLEVYREPRGSHFRHRLIVEPGEEVAPLLLAHPLLRWDPPRGTPPA
>NZ_CP010822.1|WP_003045302.1|1744689_1744929_-|MerR-family-transcriptional-regulator
MLARSAWLSLEALEEHGLSRSAVRAYVEIGFVEPLEVGGTWYFRREDLLRMAKAERIRKDLGANLIGAALVVEILERSQ
>NZ_CP010822.1|WP_003045304.1|1744915_1745746_-|DnaJ-domain-containing-protein
MKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVNKSPEAEEKFKEINEAYAILSDPEKRKIYDTYGTTTPPPPPPPGGYDFSGFDVEDFSDFFQELFGGGLFGRSRRPRRGRDVRAEVALTLEEAFHGGERVLEVGGRRVSVRIPPGVQDGATLRVPGMGGPGDPPGDLVLTVRLLPHPRFRREGQDLYATLDVPAPIAVVGGKVRAMTLEGPVEVTVPPRTQAGRKLRLKGKGFPGPTGRGDLYLEVRLTIPERLTPEEEALWKRLAEAYYARA
>NZ_CP010822.1|WP_003045305.1|1745749_1746289_-|nucleotide-exchange-factor-GrpE
MEERNLGENALEKDLNEVAQEAEALEARLKAAEEELKSLKDRYLRLLADFDNYRKRMEEELKAREREGALKVLRALLPVLDDLDRALEFAQANPESILQGVRAVREGFFRILAGLGVEEVPGEGQAFDPRYHEAIGLLPGEPGKVARVFQRGFRMGDSLVRPARVAVGEEKPEDEAGVE
>NZ_CP010822.1|WP_060474026.1|1746347_1748198_-|molecular-chaperone-DnaK
MAKAVGIDLGTTNSVIAVMEGGKPVVLENAEGERTTPSVVAFRDGETLVGRMAKRQAVLNPEGTIFEVKRFIGRRYEEVQEEAKRVPYKVVPGPDGGVRIEVKGKLYTPEEISAMILRKLVEDASKKLGEKITKAVITVPAYFNNAQREATANAGRIAGLEVLRIINEPTAAALAYGLDKKGNETVLVFDLGGGTFDVTVLEIGEGVFEVKSTSGDTHLGGSDMDHAIVNWLAEEFKREYGVDLKADRQALQRLIEAAEKAKIELSSTLETTISLPFIALDPATKTPLHLEKKLTRAKFEELIEPLLKRLRGPVEQALKDAGLTPAQIDEVILVGGATRVPAVQRVVKELLGKEPNRSVNPDEVVAMGAAIQAGVLMGEVRDVVLLDVTPLSLGVETKGGVMTVLIPRNTTIPTRKCEIFTTAEHNQTAVEIHVLQGERPMAADNKSLGRFRLEGIPPMPAGVPQIEVCFDIDANGILHVTAREKSTGREASITIQNTTTLSEEEIQRIIAEAQRHAEEDRRRKEHAELKNALDTARVQAERVLNEKPGSPEAKARLEAAIARAKELVERDAPDPELKAATEELLQAVQAYEASATAGTTGGRPDDVIDADYKPAE
>NZ_CP010822.1|WP_060474027.1|1748323_1750198_+|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MPRVHLNFLVFVLGLLFLAWAFSLAGTMAPPSGAVNYTTFLEDLKAGRVKEVVVRSGETRIQGTLTDGSGFTTYAASPPDNATLEAWTRQGVSVRVEPPQTQNALGFLWPLLLVGLLIGALYYFSRTGRAGPSDSAFSFTKSRAKVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPGRFHEMGARIPKGVLLVGPPGVGKTHIARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRRRGSGVGGGNDEREQTLNQLLVEMDGFEKDSTIIVMAATNRPDVLDPALLRPGRFDRQVAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRKKITMKDLEEAADRVMMGPAKKSLVLTHRDRQITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMMPRREDMLHWSRKRLLDQIAVALAGRAAEELVFEDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYALREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVLDLLRAKREVLERVAETLLERETLTAEEFQRVVEGLPLEVPEEPKEEREVPRVVPKIKPGGALGGA
>NZ_CP010822.1|WP_003049348.1|1750241_1750535_-|HU-family-DNA-binding-protein
MAAKKTVTKADLVDQVAAAAGLKKKDAKAAIDAFLAKVEEALAAGNKVQLTGFGTFEVRKRKARTGVKPGTKEKIKIPATQYPAFKPGKALKDKVKK
>NZ_CP010822.1|WP_003049350.1|1750657_1751287_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MERPNPVYRAAWPLARFLLHLLFGYRTEGAEKVPEKGPVILAANHLSILDPIAIGAGIKRPVSFLARADVFRLPVLSWLLPRLYAIPVERGTGDLSAIKGAIRALERGMAFGIFPEGTRSRSGRLQPFKTGVAAIAFRTGSPVVPVAVVGSEKAWPVGRKLFRLRQPIRVVYGDPISVPRKTKVSHQELESLTREIEARVRELLPPQYR
>NZ_CP010822.1|WP_003049352.1|1751292_1751973_-|endonuclease-V
MEIPPFPKPGSLEEALALQKALAGKVVVAGSLEGVRRIAALDASHRRGKPLLAVAVLYDLERGPLFVGKGAVPEEELFPYVPGFLSFREAPAYLLALKALPEAPEALLVDGQGIAHPRGLGIASHLGVHLDLPSVGVAKSLLYGRPEGPLPQERGSAVRLLSPEDRPMGYVYRSRAEARPLYVSPGHRVGLEEALAFVRALPTRFRLPEPLRLAHLEAGRALKALD
>NZ_CP010822.1|WP_003049354.1|1751973_1752846_-|bifunctional-glucose-6-phosphate/mannose-6-phosphate-isomerase
MRDLDREETYLVDRRGLALELRDLVGTGPVPQGTYPGPHGVLAYGEGRFAAELLAFPEWVEEGTLFLLEGGYDLGEAAAMGLLAESGRARVVRVGFRQGVDVHIPPSPLSPYRYLRFLLLATGQEEALKEVDEKLLEERRRLGPEVPLEENPAKFLAYTLLERLPLFYSPFFRPLEAAAQTLTARIGKSLSLTPPFSALEFFLTGLEARHEQGDPLAAVLLGGGEAVALAKEILETRVDAVAEVPPPEGSRLAQAVALWYRLAWTAYYLALLYGVDPSDQEVLERLREVS
>NZ_CP010822.1|WP_040684678.1|1752865_1753651_+|mannose-6-phosphate-isomerase
MRPCVPKPVPRIWGGSALGYGPGIGEVWLCEEPLLVKLLDPAEWLSVQVHPPHAYALRAEGKPGKYEAWYVLSPGEIVYGVKRPLGREEARRRAEEGRLEEVLRRVRVVPGQVVYLPAGVVHALGPGVRVYEVQTPSDLTYRLYDYGRPRELHLEKALEVALLEPTPIPPVRPEPVPGGERLLKTPHFALYRFPLRGGLTLRPEAPLILTLLEGEAWLLGEVLRPPATFLLFPGEEVRLQGEGLFLGAAPGLDQSPEGRED

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010822_4	4.1\|550628\|32\|NZ_CP010822\|CRT	550628-550659	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1048526-1048557	9	0.719
NZ_CP010822_5	5.8\|870063\|35\|NZ_CP010822\|PILER-CR,CRISPRCasFinder,CRT	870063-870097	35	NC_019847	Sinorhizobium meliloti GR4 plasmid pRmeGR4b, complete sequence	212839-212873	9	0.743
NZ_CP010822_8	8.20\|1233575\|38\|NZ_CP010822\|PILER-CR	1233575-1233612	38	NZ_CP026517	Deinococcus sp. NW-56 plasmid unnamed1, complete sequence	298355-298392	9	0.763

1. spacer 4.1|550628|32|NZ_CP010822|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ttccccgccgtgcgagtcgccggagaggaagt	CRISPR spacer
ccgggcgccgggcgagccgccggagaggccgt	Protospacer
..   ***** *****.***********  **

2. spacer 5.8|870063|35|NZ_CP010822|PILER-CR,CRISPRCasFinder,CRT matches to NC_019847 (Sinorhizobium meliloti GR4 plasmid pRmeGR4b, complete sequence) position: , mismatch: 9, identity: 0.743

----cccaccacccgccgcgggcgcccgactcccctccg	CRISPR spacer
gagctcca----gcgccgggggagcccgactcccctccc	Protospacer
    .***     ***** *** ***************

3. spacer 8.20|1233575|38|NZ_CP010822|PILER-CR matches to NZ_CP026517 (Deinococcus sp. NW-56 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.763

cccggcgatggcgagggcaccattaccgccctcagcta	CRISPR spacer
tacggcgacggcgagggcaccatcaccgccctgcaccc	Protospacer
. ******.**************.********  .*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1452076 : 1464055

Thermus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003046229.1\|1452076_1452982_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.7e-119	71.1
WP_003046231.1\|1453260_1454175_-	hypothetical protein	A0A0M3VSU8	Thermus_phage	2.6e-130	73.7
WP_003046233.1\|1454171_1454606_-	hypothetical protein	A0A0M4VAS8	Thermus_phage	3.0e-12	51.4
WP_155982855.1\|1455452_1455899_+	hypothetical protein	NA	NA	NA	NA
WP_155982856.1\|1456374_1456524_-	hypothetical protein	A0A1S7J237	Thermus_phage	3.8e-07	63.0
WP_003044553.1\|1456886_1457189_-	hypothetical protein	A0A1S7J230	Thermus_phage	1.4e-16	52.1
WP_003044556.1\|1457188_1458523_-	hypothetical protein	A0A1S7J233	Thermus_phage	6.7e-127	55.4
WP_003044559.1\|1458547_1459693_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	8.6e-22	27.8
WP_003044563.1\|1459640_1460048_-	hypothetical protein	NA	NA	NA	NA
WP_003044566.1\|1460076_1460286_+	DUF3248 domain-containing protein	NA	NA	NA	NA
WP_003044569.1\|1460282_1460648_+	DUF3809 domain-containing protein	NA	NA	NA	NA
WP_003044573.1\|1460668_1461343_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_003044576.1\|1461362_1462160_+	serine/threonine protein kinase	A0A2P1EMR8	Moumouvirus	1.1e-15	26.8
WP_003044579.1\|1462162_1464055_+	AMP-binding protein	A0A2K9KZV5	Tupanvirus	9.5e-10	20.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010826

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010822

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection