CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP013030	Escherichia coli strain 2012C-4227 plasmid unnamed2, complete sequence	0 crisprs	NA	0	2
NZ_CP013028	Escherichia coli strain 2012C-4227 plasmid unnamed1, complete sequence	0 crisprs	NA	0	1
NZ_CP013029	Escherichia coli strain 2012C-4227 chromosome, complete genome	7 crisprs	WYL,DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas6e,cas5,cas7,cse2gr11,RT	3	18

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 34440

Escherichia_phage(54.55%)

tail,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001187870.1\|510_1311_-	protein kilA	Q1MVK4	Enterobacteria_phage	2.1e-147	99.2
WP_001749377.1\|1474_2512_-	hypothetical protein	Q71TN2	Escherichia_phage	7.0e-172	92.8
WP_071887565.1\|2508_2730_-	host cell division inhibitor Icd-like protein	A0A077SLM6	Escherichia_phage	2.4e-37	97.3
WP_000120523.1\|3130_3805_+	hypothetical protein	Q71TC4	Escherichia_phage	6.8e-19	94.0
WP_000846124.1\|4076_4346_+	hypothetical protein	NA	NA	NA	NA
WP_060552916.1\|4404_4971_+	hypothetical protein	Q1MVL0	Enterobacteria_phage	6.2e-98	98.4
WP_000523980.1\|4981_5593_+	hypothetical protein	Q71TN8	Escherichia_phage	2.9e-109	99.5
WP_000926345.1\|5607_6489_+	hypothetical protein	A0A1B0VBL3	Salmonella_phage	3.7e-174	99.7
WP_000440158.1\|6570_9903_+	lytic transglycosylase domain-containing protein	A0A077SK38	Escherichia_phage	0.0e+00	89.9
WP_000002800.1\|9902_10259_+	hypothetical protein	Q71TP1	Escherichia_phage	1.0e-61	100.0
WP_001561130.1\|10255_11689_+	hypothetical protein	A0A1B0VAD6	Salmonella_phage	1.4e-271	99.8
WP_001189831.1\|11688_12525_+	hypothetical protein	A0A077SLH5	Escherichia_phage	1.7e-152	98.9
WP_001286326.1\|12603_13038_+	hypothetical protein	A0A077SLL3	Escherichia_phage	3.3e-75	100.0
WP_060552917.1\|13049_15899_+\|tail	phage tail protein	Q71TP5	Escherichia_phage	0.0e+00	89.5
WP_000144016.1\|15898_16477_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	7.7e-96	89.0
WP_001369353.1\|16520_17093_-	serine acetyltransferase	NA	NA	NA	NA
WP_024177048.1\|17583_17958_-	hypothetical protein	A0A077SL44	Escherichia_phage	1.0e-24	63.1
WP_000887652.1\|17848_18178_+\|holin	holin	Q37876	Escherichia_phage	1.3e-52	100.0
WP_000580770.1\|18174_18618_+	hypothetical protein	A0A077SK09	Escherichia_phage	2.9e-82	99.3
WP_001345482.1\|18604_19207_+	hypothetical protein	Q1MVM6	Enterobacteria_phage	5.4e-100	100.0
WP_000434673.1\|19208_21128_+	hypothetical protein	A0A1B0V7H1	Salmonella_phage	0.0e+00	95.1
WP_000175481.1\|21124_21490_+	hypothetical protein	Q1MVM8	Enterobacteria_phage	6.7e-45	98.3
WP_060552918.1\|21502_24490_+	hypothetical protein	A0A1B0VFX4	Salmonella_phage	0.0e+00	99.3
WP_001165936.1\|24479_24788_+	hypothetical protein	O21974	Escherichia_phage	5.4e-48	97.1
WP_032283206.1\|24819_25914_-	hypothetical protein	Q5QBP2	Enterobacteria_phage	1.3e-40	36.3
WP_000432105.1\|25906_26689_-	hypothetical protein	A0A1B0VDP8	Salmonella_phage	1.9e-145	100.0
WP_032283208.1\|26695_27373_-	DUF2829 domain-containing protein	A0A1B0VBT1	Salmonella_phage	1.9e-125	97.8
WP_000068870.1\|27570_28059_-	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	2.3e-77	90.1
WP_001345478.1\|28228_28786_+	lysozyme	Q71TF3	Escherichia_phage	4.2e-107	100.0
WP_001038141.1\|28778_29030_+	hypothetical protein	Q71TF4	Escherichia_phage	6.0e-37	100.0
WP_071802376.1\|29373_29595_+	host cell division inhibitor Icd-like protein	Q38557	Escherichia_phage	3.3e-31	83.6
WP_060552919.1\|29591_30704_+	antirepressor	A0A077SLR9	Escherichia_phage	4.7e-174	86.0
WP_060552920.1\|30779_31799_-	hypothetical protein	Q71TR6	Escherichia_phage	7.8e-184	99.4
WP_060552921.1\|31791_33501_-	hypothetical protein	Q1MVN6	Enterobacteria_phage	0.0e+00	99.6
WP_158414313.1\|33678_34440_+	N-6 DNA methylase	A0A1B0VCE3	Salmonella_phage	8.8e-140	98.8

DBSCAN-SWA_2

38378 : 97289

Escherichia_phage(75.0%)

terminase,integrase

attL 29040:29057|attR 79588:79605

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
29040:29057	attL	NA	NA	NA	NA
WP_024220496.1\|38378_38819_+	hypothetical protein	A0A077SLF0	Escherichia_phage	8.5e-79	99.3
WP_000747846.1\|38815_39064_+	hypothetical protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
WP_001100381.1\|39125_40076_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_072096992.1\|40108_40861_-	hypothetical protein	Q71TG2	Escherichia_phage	6.5e-119	92.0
WP_024222310.1\|40939_41500_-	Ref family protein	Q5QBN4	Enterobacteria_phage	2.8e-95	94.6
WP_001224234.1\|41745_42057_-	hypothetical protein	A0A077SK03	Escherichia_phage	1.0e-46	100.0
WP_032326486.1\|42107_43139_-\|integrase	site-specific integrase	A0A077SLE7	Escherichia_phage	2.1e-192	98.5
WP_000481733.1\|43135_43531_-	hypothetical protein	NA	NA	NA	NA
WP_000542341.1\|43550_43772_-	hypothetical protein	Q5QBN7	Enterobacteria_phage	1.0e-32	94.5
WP_000874157.1\|44376_44586_+	hypothetical protein	Q5XLQ8	Enterobacteria_phage	3.1e-31	98.6
WP_000611655.1\|44696_45548_+	hypothetical protein	A0A077SLM8	Escherichia_phage	2.3e-157	99.3
WP_060552922.1\|45580_46699_-	antirepressor	A0A077SLR9	Escherichia_phage	2.4e-178	88.2
WP_000908421.1\|46695_47172_-	host cell division inhibitor Icd-like protein	Q38557	Escherichia_phage	3.4e-25	80.3
WP_000124150.1\|47255_48740_-\|terminase	terminase	Q71T61	Escherichia_phage	1.5e-292	100.0
WP_000219616.1\|48739_49933_-	hypothetical protein	Q71T62	Escherichia_phage	5.7e-178	99.5
WP_001326849.1\|50018_50471_-	late promoter-activating protein	Q71T63	Escherichia_phage	3.0e-79	100.0
WP_032326523.1\|50559_51603_-	DUF968 domain-containing protein	A0A077SLM1	Escherichia_phage	8.2e-205	98.8
WP_000113018.1\|51630_51810_-	hypothetical protein	Q71TH5	Escherichia_phage	1.2e-23	98.3
WP_001216034.1\|51814_52195_-	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.1e-63	100.0
WP_001190712.1\|52194_52416_-	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_032326524.1\|52488_52878_-	DNA repair protein	A0A077SK24	Escherichia_phage	4.1e-69	97.7
WP_001133670.1\|53052_53625_+	hypothetical protein	Q71TH9	Escherichia_phage	6.7e-108	100.0
WP_001667237.1\|53631_53883_-	DNA polymerase III subunit theta	Q71T70	Escherichia_phage	7.6e-40	100.0
WP_001261545.1\|54544_54907_-	hypothetical protein	Q71TI4	Escherichia_phage	4.9e-56	99.2
WP_000057458.1\|54903_55578_-	hypothetical protein	A0A077SK55	Escherichia_phage	1.2e-116	98.6
WP_032326525.1\|55559_55934_-	hypothetical protein	A0A077SL57	Escherichia_phage	6.4e-67	97.6
WP_000269004.1\|55940_56234_-	hypothetical protein	A0A077SK23	Escherichia_phage	3.1e-45	92.8
WP_032326596.1\|56412_56646_-	hypothetical protein	A0A1B0V7L5	Salmonella_phage	3.6e-36	97.4
WP_000426669.1\|56728_57124_-	hypothetical protein	A0A1I9LJU8	Stx_converting_phage	4.4e-66	98.5
WP_060552923.1\|57123_57963_-	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	4.0e-93	64.1
WP_000951706.1\|57959_58169_-	hypothetical protein	A0A077SL56	Escherichia_phage	4.2e-36	100.0
WP_000935430.1\|58424_58637_-	hypothetical protein	A0A2R2Z310	Escherichia_phage	2.2e-32	88.6
WP_000403776.1\|58682_59042_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	8.0e-59	99.2
WP_001018057.1\|59708_59999_-	DUF4752 family protein	A0A2I6TCB0	Escherichia_phage	1.2e-36	82.3
WP_023442322.1\|59995_60697_-	ead/Ea22-like family protein	A0A0U2QW67	Escherichia_phage	7.0e-51	55.8
WP_023442323.1\|60683_60950_-	hypothetical protein	Q1MVG1	Enterobacteria_phage	4.5e-43	98.8
WP_000675643.1\|60942_61524_-	hypothetical protein	A0A077SLQ8	Escherichia_phage	2.0e-112	100.0
WP_000021752.1\|61718_62225_-	hypothetical protein	Q71T77	Escherichia_phage	5.0e-91	97.0
WP_000107685.1\|62298_63561_-	hypothetical protein	A0A1B0V7L1	Salmonella_phage	4.0e-230	97.6
WP_024222347.1\|63862_64564_-	hypothetical protein	A0A077SLK3	Escherichia_phage	2.3e-142	98.7
WP_024222346.1\|64560_65238_-	serine/threonine protein phosphatase	Q71TJ1	Escherichia_phage	1.9e-133	98.7
WP_029365172.1\|65234_65861_-	norphogenetic protein	Q1MVG8	Enterobacteria_phage	6.1e-123	99.5
WP_012817939.1\|65758_66421_-	hypothetical protein	Q71T83	Escherichia_phage	4.5e-124	100.0
WP_001561105.1\|66362_66518_-	hypothetical protein	Q71TJ4	Escherichia_phage	2.0e-19	98.0
WP_024224109.1\|66584_67163_-	norphogenetic protein	Q71T85	Escherichia_phage	9.8e-99	92.2
WP_000840930.1\|67165_67411_-	hypothetical protein	A0A1B0VDU5	Salmonella_phage	1.5e-40	100.0
WP_000235786.1\|67557_67935_+	hypothetical protein	Q38620	Escherichia_phage	2.2e-67	100.0
WP_001141901.1\|67944_69162_+	hypothetical protein	A0A077SL53	Escherichia_phage	1.9e-224	99.8
WP_000896808.1\|69165_69894_+	hypothetical protein	Q71TJ9	Escherichia_phage	1.2e-138	99.6
WP_015974270.1\|69880_70666_+	hypothetical protein	Q71T90	Escherichia_phage	9.4e-145	100.0
WP_000212015.1\|70667_71684_+	hypothetical protein	A0A077SLQ1	Escherichia_phage	4.5e-192	99.7
WP_000535203.1\|71676_72309_+	hypothetical protein	A0A077SK50	Escherichia_phage	6.9e-90	100.0
WP_060552924.1\|72379_73414_-	antirepressor	Q71TN2	Escherichia_phage	6.3e-149	79.4
WP_000245706.1\|73410_73632_-	host cell division inhibitor Icd-like protein	Q38557	Escherichia_phage	2.1e-30	82.2
WP_060552925.1\|74011_75010_-	hypothetical protein	A0A077SL52	Escherichia_phage	7.6e-192	98.5
WP_001276599.1\|75009_76374_-	replicative DNA helicase	A0A077SK18	Escherichia_phage	2.1e-253	100.0
WP_000751806.1\|76757_77585_-	hypothetical protein	A0A077SLJ6	Escherichia_phage	2.8e-131	99.6
WP_024222318.1\|79594_82882_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A077SL51	Escherichia_phage	0.0e+00	98.7
79588:79605	attR	NA	NA	NA	NA
WP_000472523.1\|82878_83784_-	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	5.9e-159	99.3
WP_001177859.1\|83776_84061_-	hypothetical protein	Q71TA2	Escherichia_phage	1.7e-48	98.9
WP_000890203.1\|84523_85312_+	hypothetical protein	A0A1B0V830	Salmonella_phage	9.2e-108	89.3
WP_000007769.1\|85351_85774_+	hypothetical protein	A0A1B0VCB0	Salmonella_phage	2.7e-58	100.0
WP_000336812.1\|85799_85940_+	hypothetical protein	Q71TL6	Escherichia_phage	6.3e-20	100.0
WP_001281116.1\|85951_86344_+	hypothetical protein	A0A077SLJ1	Escherichia_phage	2.0e-71	99.2
WP_032346381.1\|86677_87562_+	RepB family plasmid replication initiator protein	A0A1B0VDL5	Salmonella_phage	4.0e-160	99.3
WP_023442332.1\|87854_88664_+	GIY-YIG nuclease family protein	A0A077SK46	Escherichia_phage	2.1e-155	97.8
WP_001285362.1\|88832_90029_+	ParA family protein	A0A077SL49	Escherichia_phage	1.6e-225	100.0
WP_023442333.1\|90045_91047_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	6.3e-178	99.7
WP_023442334.1\|91272_92979_+	hypothetical protein	Q1MVJ5	Enterobacteria_phage	0.0e+00	99.8
WP_000085155.1\|93039_94629_+	hypothetical protein	A0A1B0V7E4	Salmonella_phage	6.2e-305	99.2
WP_000041774.1\|94638_95454_+	hypothetical protein	A0A1B0V835	Salmonella_phage	9.8e-113	99.3
WP_064765777.1\|95489_96071_+	hypothetical protein	Q1MVJ8	Enterobacteria_phage	6.1e-101	96.9
WP_001313475.1\|96706_96862_-	type I toxin-antitoxin system toxin HokD	A0A1I9LJU7	Stx_converting_phage	1.0e-15	92.2
WP_001426344.1\|97043_97289_-	hypothetical protein	A0A1B0VDM5	Salmonella_phage	3.5e-13	45.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013028

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

52492 : 61973

Acinetobacter_phage(28.57%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000336626.1\|52492_53311_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.0e-66	45.2
WP_077744811.1\|53216_53723_+	chromosome partitioning protein ParB	Q1MVJ4	Enterobacteria_phage	3.3e-26	52.9
WP_010375835.1\|53861_54044_-	DUF4113 domain-containing protein	A0A1W6JNT0	Morganella_phage	8.2e-12	55.4
WP_047618801.1\|54451_58351_-\|protease	serine protease autotransporter EspP	Q9LA58	Enterobacterial_phage	3.2e-238	40.3
WP_106888148.1\|59299_60513_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
WP_000088311.1\|60816_61119_+\|transposase	transposase	Q716C1	Shigella_phage	1.1e-05	31.3
WP_060552797.1\|61154_61973_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.5e-65	44.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP013029

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013029_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013029_1

292364-292476

Orphan

Consensus_repeat	Method
GTCGGATAAGGCGTTCATGCCGCATCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013029_1

>merge|NZ_CP013029|1|292364-292476|CRISPRCasFinder
GTCGGATAAGGCGTTCATGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTCGCGCGTCTTATCAGGCCTACGAGTTCAGTCGGATAAGGCGTTCACGCCGCATCCG

>NZ_CP013029|1|1|292364-292476|CRISPRCasFinder
GTCGGATAAGGCGTTCATGCCGCATCCG	ACAATAACAGCATTGCCTGATGCGACGCTCGCGCGTCTTATCAGGCCTACGAGTTCA
GTCGGATAAGGCGTTCACGCCGCATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013029.1\|WP_000583470.1\|283103_283556_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP013029.1\|WP_001059422.1\|287007_287511_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP013029.1\|WP_000500686.1\|281581_282295_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714
NZ_CP013029.1\|WP_001548056.1\|282365_282959_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013029.1\|WP_001295681.1\|295379_296462_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP013029.1\|WP_032208261.1\|296580_298083_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP013029.1\|WP_074433542.1\|285152_285308_+\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP013029.1\|WP_000896738.1\|303959_304523_+\|gluconokinase	unknown	unknown	gnl\|CDD\|182097
NZ_CP013029.1\|WP_000397144.1\|292501_294013_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP013029.1\|WP_000584114.1\|294279_295380_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP013029.1\|WP_001296693.1\|280640_280775_-\|pyr-operon-leader-peptide	unknown	unknown	gnl\|CDD\|285317
NZ_CP013029.1\|WP_032208262.1\|288956_291812_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP013029.1\|WP_000012919.1\|285379_286384_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP013029.1\|WP_000002953.1\|286545_286962_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP013029.1\|WP_000786399.1\|291811_292255_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP013029.1\|WP_106888148.1\|300953_302167_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP013029.1\|WP_001309159.1\|298160_299159_-\|DNA-binding-transcriptional-regulator-IdnR	unknown	unknown	gnl\|CDD\|380489
NZ_CP013029.1\|WP_032208260.1\|299225_300545_-\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
NZ_CP013029.1\|WP_001197416.1\|302711_303743_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
NZ_CP013029.1\|WP_032208422.1\|304526_305546_-\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186

Protein	Function_ID	Function_description	E-value
NZ_CP013029.1\|WP_000583470.1\|283103_283556_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.50239e-70
NZ_CP013029.1\|WP_001059422.1\|287007_287511_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.57543e-19
NZ_CP013029.1\|WP_000500686.1\|281581_282295_-\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	5.29943e-150
NZ_CP013029.1\|WP_001548056.1\|282365_282959_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.93166e-10
NZ_CP013029.1\|WP_001295681.1\|295379_296462_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP013029.1\|WP_032208261.1\|296580_298083_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP013029.1\|WP_000896738.1\|303959_304523_+\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
NZ_CP013029.1\|WP_000397144.1\|292501_294013_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP013029.1\|WP_000584114.1\|294279_295380_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP013029.1\|WP_001296693.1\|280640_280775_-\|pyr-operon-leader-peptide	gnl\|CDD\|285317	pfam08052, PyrBI_leader, PyrBI operon leader peptide. This family consists of the pyrBI operon leader peptides. The expression of the pyrBI operon, which encodes the subunits of the pyrimidine biosynthetic enzyme aspartate transcarbamylase. is regulated primarily through a UTP-sensitive transcriptional attenuation control mechanism. In this mechanism, the concentration of UTP determines the extent of coupling between transcription and translation within the pyrBI leader region, hence determining the level of rho-independent transcriptional termination at an attenuator preceding the pyrB gene.	7.18385e-22
NZ_CP013029.1\|WP_032208262.1\|288956_291812_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP013029.1\|WP_000012919.1\|285379_286384_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP013029.1\|WP_000002953.1\|286545_286962_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_CP013029.1\|WP_000786399.1\|291811_292255_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NZ_CP013029.1\|WP_106888148.1\|300953_302167_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.78346e-158
NZ_CP013029.1\|WP_001309159.1\|298160_299159_-\|DNA-binding-transcriptional-regulator-IdnR	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.4437e-109
NZ_CP013029.1\|WP_032208260.1\|299225_300545_-\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP013029.1\|WP_001197416.1\|302711_303743_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NZ_CP013029.1\|WP_032208422.1\|304526_305546_-\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	7.75177e-168

>NZ_CP013029.1|WP_000786399.1|291811_292255_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP013029.1|WP_032208262.1|288956_291812_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVVLRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIELHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPLYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP013029.1|WP_001059422.1|287007_287511_-|GNAT-family-N-acetyltransferase
MNNIAPQSPVMRRLTQQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYDGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIGLYEHLGFQHIDYALGCTGHVDCEVRMLREL
>NZ_CP013029.1|WP_000002953.1|286545_286962_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_CP013029.1|WP_000012919.1|285379_286384_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRTLAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
>NZ_CP013029.1|WP_074433542.1|285152_285308_+|DNA-binding-protein
MINELKIRTRMMKILRNGKINIYEYINKEQLEKLNPPEDLRISIEKYGWNN
>NZ_CP013029.1|WP_000583470.1|283103_283556_+|YhcH/YjgK/YiaL-family-protein
MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NZ_CP013029.1|WP_001548056.1|282365_282959_+|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHSQSAQCVTDFMSTVMSGLSAKAREGHSLEQLCATAALAGEAIKTILEE
>NZ_CP013029.1|WP_000500686.1|281581_282295_-|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAEHLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>NZ_CP013029.1|WP_001296693.1|280640_280775_-|pyr-operon-leader-peptide
MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
>NZ_CP013029.1|WP_000397144.1|292501_294013_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP013029.1|WP_000584114.1|294279_295380_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP013029.1|WP_001295681.1|295379_296462_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP013029.1|WP_032208261.1|296580_298083_-|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHSVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDTNGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDVKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NZ_CP013029.1|WP_001309159.1|298160_299159_-|DNA-binding-transcriptional-regulator-IdnR
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>NZ_CP013029.1|WP_032208260.1|299225_300545_-|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFADVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTPGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGHYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVQATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>NZ_CP013029.1|WP_106888148.1|300953_302167_-|IS3-family-transposase
MTKNTRFSPEVRQRAVRMVLESQGEYDSQWAAICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRSTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSPSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
>NZ_CP013029.1|WP_001197416.1|302711_303743_-|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTEMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>NZ_CP013029.1|WP_000896738.1|303959_304523_+|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>NZ_CP013029.1|WP_032208422.1|304526_305546_-|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVHVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF

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Crispr_ID: NZ_CP013029_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013029_2

550621-550736

Orphan

Consensus_repeat	Method
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013029_2

>merge|NZ_CP013029|2|550621-550736|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTT

>NZ_CP013029|2|2|550621-550736|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	GAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCA
GATAAGACGCGTCAGCGTCGCATCAGGCGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013029.1\|WP_001248770.1\|561264_561396_+\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203
NZ_CP013029.1\|WP_000610901.1\|536626_537004_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP013029.1\|WP_032205929.1\|549860_550556_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP013029.1\|WP_032205926.1\|556787_558398_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP013029.1\|WP_000151734.1\|550755_552258_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP013029.1\|WP_001297366.1\|559520_561176_-\|DNA-binding-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP013029.1\|WP_032205930.1\|547434_549786_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP013029.1\|WP_001295536.1\|558373_559357_-\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP013029.1\|WP_000916287.1\|556105_556804_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
NZ_CP013029.1\|WP_032205927.1\|555271_556036_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP013029.1\|WP_000241259.1\|537824_538814_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP013029.1\|WP_032205933.1\|538813_540100_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP013029.1\|WP_032205956.1\|554307_555186_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP013029.1\|WP_001200573.1\|542761_543577_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP013029.1\|WP_000951769.1\|552268_553969_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP013029.1\|WP_032205934.1\|537006_537828_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP013029.1\|WP_032205931.1\|544364_547271_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP013029.1\|WP_000637846.1\|561497_562676_+\|sugar-efflux-transporter-SetA	unknown	unknown	gnl\|CDD\|129977
NZ_CP013029.1\|WP_032205932.1\|540152_542507_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP013029.1\|WP_000525176.1\|543693_544353_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659

Protein	Function_ID	Function_description	E-value
NZ_CP013029.1\|WP_001248770.1\|561264_561396_+\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924
NZ_CP013029.1\|WP_000610901.1\|536626_537004_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP013029.1\|WP_032205929.1\|549860_550556_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	3.85174e-179
NZ_CP013029.1\|WP_032205926.1\|556787_558398_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP013029.1\|WP_000151734.1\|550755_552258_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP013029.1\|WP_001297366.1\|559520_561176_-\|DNA-binding-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP013029.1\|WP_032205930.1\|547434_549786_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP013029.1\|WP_001295536.1\|558373_559357_-\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NZ_CP013029.1\|WP_000916287.1\|556105_556804_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	1.09593e-164
NZ_CP013029.1\|WP_032205927.1\|555271_556036_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	4.07701e-49
NZ_CP013029.1\|WP_000241259.1\|537824_538814_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP013029.1\|WP_032205933.1\|538813_540100_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP013029.1\|WP_032205956.1\|554307_555186_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP013029.1\|WP_001200573.1\|542761_543577_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.09407e-169
NZ_CP013029.1\|WP_000951769.1\|552268_553969_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP013029.1\|WP_032205934.1\|537006_537828_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	1.85371e-146
NZ_CP013029.1\|WP_032205931.1\|544364_547271_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP013029.1\|WP_000637846.1\|561497_562676_+\|sugar-efflux-transporter-SetA	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP013029.1\|WP_032205932.1\|540152_542507_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP013029.1\|WP_000525176.1\|543693_544353_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.37214e-159

>NZ_CP013029.1|WP_032205929.1|549860_550556_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINSEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP013029.1|WP_032205930.1|547434_549786_-|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVKGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDTRLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NZ_CP013029.1|WP_032205931.1|544364_547271_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVEGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLFLSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NZ_CP013029.1|WP_000525176.1|543693_544353_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NZ_CP013029.1|WP_001200573.1|542761_543577_+|co-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NZ_CP013029.1|WP_032205932.1|540152_542507_-|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWKGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWQHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL
>NZ_CP013029.1|WP_032205933.1|538813_540100_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFASAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>NZ_CP013029.1|WP_000241259.1|537824_538814_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRPYSPNSPAQPQTTGTLTLLPVALRESVTAGQLAIENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NZ_CP013029.1|WP_032205934.1|537006_537828_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPLAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAKNAPLQES
>NZ_CP013029.1|WP_000610901.1|536626_537004_-|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>NZ_CP013029.1|WP_000151734.1|550755_552258_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NZ_CP013029.1|WP_000951769.1|552268_553969_-|ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVATL
>NZ_CP013029.1|WP_032205956.1|554307_555186_+|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQLHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NZ_CP013029.1|WP_032205927.1|555271_556036_+|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWIGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV
>NZ_CP013029.1|WP_000916287.1|556105_556804_-|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTDELLSGKASASALLGITG
>NZ_CP013029.1|WP_032205926.1|556787_558398_-|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASFCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>NZ_CP013029.1|WP_001295536.1|558373_559357_-|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>NZ_CP013029.1|WP_001297366.1|559520_561176_-|DNA-binding-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNTTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>NZ_CP013029.1|WP_001248770.1|561264_561396_+|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>NZ_CP013029.1|WP_000637846.1|561497_562676_+|sugar-efflux-transporter-SetA
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSWGHFAVYWVIAVISVVALFLTAKVKDV

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Crispr_ID: NZ_CP013029_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013029_3

1407458-1407606

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP013029_3

>merge|NZ_CP013029|3|1407458-1407606|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAATCGACGGGGTGCGGTAAAACCTTTGCGAACGCGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGC

>NZ_CP013029|3|3|1407458-1407606|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CGACGGGGTGCGGTAAAACCTTTGCGAACGC
GTTCACTGCCGTACAGGCAGCTTAGAAAT	TCACAGGTAACATACTCCACCCGCCCACCAT
GTTCACTGCCGTACAGACAGATAAAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013029.1\|WP_024166058.1\|1401122_1401305_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013029.1\|WP_000537418.1\|1412849_1413815_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP013029.1\|WP_001145908.1\|1400698_1401139_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|224321
NZ_CP013029.1\|WP_000134111.1\|1400402_1400699_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130623
NZ_CP013029.1\|WP_032208042.1\|1410960_1412727_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP013029.1\|WP_032208039.1\|1414987_1418821_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP013029.1\|WP_032208053.1\|1403441_1403723_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013029.1\|WP_001202188.1\|1409238_1410960_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP013029.1\|WP_000067756.1\|1419597_1420941_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP013029.1\|WP_032208045.1\|1408492_1409197_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP013029.1\|WP_016241300.1\|1400067_1400406_+\|phage-head-closure-protein	unknown	unknown	gnl\|CDD\|227901
NZ_CP013029.1\|WP_032208036.1\|1421031_1422324_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP013029.1\|WP_000520781.1\|1404617_1404938_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP013029.1\|WP_032208055.1\|1398859_1400071_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|227039
NZ_CP013029.1\|WP_001295343.1\|1418975_1419587_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP013029.1\|WP_001475696.1\|1398300_1398858_+\|HK97-family-phage-prohead-protease	unknown	unknown	gnl\|CDD\|226263
NZ_CP013029.1\|WP_000113648.1\|1401427_1401784_+\|phage-terminase-small-subunit-P27-family	unknown	unknown	gnl\|CDD\|226270
NZ_CP013029.1\|WP_032208047.1\|1404968_1407245_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP013029.1\|WP_001040187.1\|1407989_1408208_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP013029.1\|WP_000228473.1\|1414358_1414853_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009

Protein	Function_ID	Function_description	E-value
NZ_CP013029.1\|WP_000537418.1\|1412849_1413815_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP013029.1\|WP_001145908.1\|1400698_1401139_+\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	1.38968e-15
NZ_CP013029.1\|WP_000134111.1\|1400402_1400699_+\|hypothetical-protein	gnl\|CDD\|130623	TIGR01560, phage-related_hypothetical_protein, uncharacterized phage protein (possible DNA packaging). This model describes a small (~ 100 amino acids) protein found in phage and in putative prophage regions of a number of bacterial genomes. Members have been annotated in some cases as a possible DNA packaging protein, but the source of this annotation was not traced during construction of this model. [Mobile and extrachromosomal element functions, Prophage functions].	4.7238e-38
NZ_CP013029.1\|WP_032208042.1\|1410960_1412727_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP013029.1\|WP_032208039.1\|1414987_1418821_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP013029.1\|WP_001202188.1\|1409238_1410960_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP013029.1\|WP_000067756.1\|1419597_1420941_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP013029.1\|WP_032208045.1\|1408492_1409197_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	6.08206e-138
NZ_CP013029.1\|WP_016241300.1\|1400067_1400406_+\|phage-head-closure-protein	gnl\|CDD\|227901	COG5614, COG5614, Bacteriophage head-tail adaptor [General function prediction only].	5.56349e-43
NZ_CP013029.1\|WP_032208036.1\|1421031_1422324_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP013029.1\|WP_000520781.1\|1404617_1404938_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP013029.1\|WP_032208055.1\|1398859_1400071_+\|phage-portal-protein	gnl\|CDD\|227039	COG4695, COG4695, Phage-related protein [Function unknown].	2.45835e-153
NZ_CP013029.1\|WP_001295343.1\|1418975_1419587_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP013029.1\|WP_001475696.1\|1398300_1398858_+\|HK97-family-phage-prohead-protease	gnl\|CDD\|226263	COG3740, COG3740, Phage head maturation protease [General function prediction only].	4.43324e-77
NZ_CP013029.1\|WP_000113648.1\|1401427_1401784_+\|phage-terminase-small-subunit-P27-family	gnl\|CDD\|226270	COG3747, COG3747, Phage terminase, small subunit [DNA replication, recombination, and repair].	4.53234e-48
NZ_CP013029.1\|WP_032208047.1\|1404968_1407245_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP013029.1\|WP_001040187.1\|1407989_1408208_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP013029.1\|WP_000228473.1\|1414358_1414853_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117

>NZ_CP013029.1|WP_032208047.1|1404968_1407245_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTAYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGYQSAQKHKAEAAH
>NZ_CP013029.1|WP_000520781.1|1404617_1404938_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP013029.1|WP_032208053.1|1403441_1403723_+|hypothetical-protein
MTEAEILGLIRRVSGISQQHDEQGTQPDSMTAENYARVVAEVMRRDGIELNGVDMRNIRTRVLELLAYRRRVEMYREKEKITYHWKKPERLRR
>NZ_CP013029.1|WP_000113648.1|1401427_1401784_+|phage-terminase-small-subunit-P27-family
MARPPKVPAYLDDIAVKQWREKSRQLAERGDLTPADWSNLELYCVNYSIYRKAVADLAARGFSIVNSQGGESRNPALSAKSDAERVMIKMASLLGFDPISRRKNPPETEEEDELDRLE
>NZ_CP013029.1|WP_024166058.1|1401122_1401305_+|hypothetical-protein
MALMNEREQNRLIRGLIRQRDAWKAQETGHKDKASGRAERITATRLNDRDREVMECFRNR
>NZ_CP013029.1|WP_001145908.1|1400698_1401139_+|HNH-endonuclease
MPWQPLRRCTEPGCNRRVKSGKCEEHRRSARQQQDSRRGSSRERGYTRQWEKYRAMYLSKNPLCAHCLEKGIYTPAVVVDHIIPIDGGNDVLFWPEWNHQPLCQACHNQKTKWLDPSTKNKRAAGGFREEEERAANRNNWMYGADE
>NZ_CP013029.1|WP_000134111.1|1400402_1400699_+|hypothetical-protein
MTEELITLEEVKLHCRIDGDEEDQLISGYIAASLEACQIHIGRRFDDGLEFTPAIKIGCMMFIAHLYENRQIVADNAKTHVPMTIGALWTAYRDVGVY
>NZ_CP013029.1|WP_016241300.1|1400067_1400406_+|phage-head-closure-protein
MNIGRLRDRVTIQTLKQTRAMTGEILETWEDGHTLWASVNMVSSKEAISSGAELAIGTVRIWIRYRKDINATSRIKVNTGPLAGRVLNIIGQPLPDAARTRLEILCREGAEK
>NZ_CP013029.1|WP_032208055.1|1398859_1400071_+|phage-portal-protein
MWPFRRKKEQRSMTLDEFMALAGTSNTGAGEYVSSGTAESLPAVMNAVTVISEAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAWQTPYQFKRMMIRHCLLNGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGEHNWRYCITDAYTGNTRNYLPWEVLHLRYSTDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMSYQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVVSPVPGIRYQVEFDSADLLRATPGERFATYERGIKSGVMCPNEAREREGLSPRDGGDEFSQAWKQEVKISEGEKPE
>NZ_CP013029.1|WP_001475696.1|1398300_1398858_+|HK97-family-phage-prohead-protease
MKSMEIRSSEITTSASNTLTGYVVRWDNLSELLWGEFYEKFQRGAFTEWLAAGNDVRGLYEHDHSMLLGRTRSGTLKLEEDDTGLRFELTPPDTSTGRDVIELVKRGDISGMSFGFRSRKDVWDTTTDPCVRTVLVAELYEITVTSVPAYPDSGVELARRSLYEQHPEKMPRADNRRWWADLAGV
>NZ_CP013029.1|WP_001040187.1|1407989_1408208_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP013029.1|WP_032208045.1|1408492_1409197_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHSHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>NZ_CP013029.1|WP_001202188.1|1409238_1410960_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAESLRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP013029.1|WP_032208042.1|1410960_1412727_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAKIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEVELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEHELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGCYAELSVAGGPFATLLAHRQEEI
>NZ_CP013029.1|WP_000537418.1|1412849_1413815_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP013029.1|WP_000228473.1|1414358_1414853_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP013029.1|WP_032208039.1|1414987_1418821_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAVAATTATQSWAAPVEPVTQTPPVASVDVPPSQPTVAWQPVPGPQTGEPVIAPAPDGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQSVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADCMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP013029.1|WP_001295343.1|1418975_1419587_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP013029.1|WP_000067756.1|1419597_1420941_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPREIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP013029.1|WP_032208036.1|1421031_1422324_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAGLDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Crispr_ID: NZ_CP013029_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013029_4

1639558-1639649

Orphan

Consensus_repeat	Method
GCATCAGAAGCAGGTAAAAAAGGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013029_4

>merge|NZ_CP013029|4|1639558-1639649|CRISPRCasFinder
GCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGGAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGG

>NZ_CP013029|4|4|1639558-1639649|CRISPRCasFinder
GCATCAGAAGCAGGTAAAAAAGGTGG	ACAGCACAGCGGGGGGAATTTCAAGAATGACCCGCAGCGC
GCATCTGAAGCAGGTAAAAAAGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013029.1\|WP_001028096.1\|1640889_1641384_-\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP013029.1\|WP_001001183.1\|1641394_1641985_-\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP013029.1\|WP_032206532.1\|1645949_1649912_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP013029.1\|WP_071845684.1\|1632972_1633188_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013029.1\|WP_001126780.1\|1642802_1643189_-\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP013029.1\|WP_060552826.1\|1634880_1635306_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013029.1\|WP_060552824.1\|1630620_1632780_-\|tape-measure-protein	unknown	unknown	gnl\|CDD\|131723
NZ_CP013029.1\|WP_060552825.1\|1634385_1634694_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013029.1\|WP_060552827.1\|1635305_1635596_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013029.1\|WP_001307100.1\|1643200_1643893_-\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP013029.1\|WP_001307099.1\|1641994_1642795_-\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP013029.1\|WP_032206534.1\|1645271_1645910_+\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP013029.1\|WP_000979516.1\|1649966_1650176_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013029.1\|WP_000410414.1\|1636205_1637183_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227880
NZ_CP013029.1\|WP_000666449.1\|1635915_1636206_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013029.1\|WP_044501828.1\|1633210_1633915_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013029.1\|WP_001352489.1\|1643892_1644984_-\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP013029.1\|WP_060552829.1\|1638197_1638767_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP013029.1\|WP_000506009.1\|1635733_1635919_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013029.1\|WP_032206537.1\|1639762_1640869_-\|pyrimidine-permease	unknown	unknown	gnl\|CDD\|132655

Protein	Function_ID	Function_description	E-value
NZ_CP013029.1\|WP_001028096.1\|1640889_1641384_-\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	8.28716e-106
NZ_CP013029.1\|WP_001001183.1\|1641394_1641985_-\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	2.57102e-129
NZ_CP013029.1\|WP_032206532.1\|1645949_1649912_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP013029.1\|WP_032206537.1\|1639762_1640869_-\|pyrimidine-permease	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	1.41788e-100
NZ_CP013029.1\|WP_001126780.1\|1642802_1643189_-\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP013029.1\|WP_001307100.1\|1643200_1643893_-\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.45431e-169
NZ_CP013029.1\|WP_001352489.1\|1643892_1644984_-\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP013029.1\|WP_000410414.1\|1636205_1637183_-\|hypothetical-protein	gnl\|CDD\|227880	COG5593, COG5593, Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis].	0.000619511
NZ_CP013029.1\|WP_060552824.1\|1630620_1632780_-\|tape-measure-protein	gnl\|CDD\|131723	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.	1.40036e-09
NZ_CP013029.1\|WP_060552829.1\|1638197_1638767_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	6.0519e-43
NZ_CP013029.1\|WP_001307099.1\|1641994_1642795_-\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	1.96403e-140
NZ_CP013029.1\|WP_032206534.1\|1645271_1645910_+\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	2.19121e-153

>NZ_CP013029.1|WP_060552829.1|1638197_1638767_+|recombinase-family-protein
MRTFLYARVSVNDLTTQNQVEAVKRAGYEVKPSRVIEEVISGATPAMDRPQFVKLVDKLEEGDCLVVTKIDRLGRDNIDVQKTVTMLLDMGVKLICLDLPVKDLSSAEGKLILQLFSTFAEFELNRIRERTREGLERAKAQGKVLGRPVAVNTTEAVLEHKAKGLSQSQVAKLLNLSVRTVSRHWTKTL
>NZ_CP013029.1|WP_000410414.1|1636205_1637183_-|hypothetical-protein
MEKFHMFDDRIYQMTNGVKAADRIIYTVMLNEQKFYHDKGQYYTPSYAHLGQYAGITRTSVIACMKRLEAHGLIKKTNVASNQCVIKVYSLDEVPEVLTELTAKEARKAKLESKVTQSVKKDDPLSQNSLPTESKFFTQSVKIFDTYNNSNNKKELINNNKEDDFEEESLKKGDLLCDSHECDIKEDDFLSLDELNDFLSMNESDLDSEATKETSKTSDLEEDKISDVIASSDHKNTQCPATDDEMDPFDDDEEDEESEREKAIKRVEKKKRFELARQKNKVSGLDPFDDSDDDDFSFTPKKKQTQDDKKQKIKPKMYFAGGGMC
>NZ_CP013029.1|WP_000666449.1|1635915_1636206_-|hypothetical-protein
MKEYNGEKRYKDYLLRRYSISREGHLLKDTHGEVYRIRPKKEGKNYFFFDGVTDLKIDALRFAVLYHYDIWDSVHQLRLKDGDPSNLKATNIITKR
>NZ_CP013029.1|WP_000506009.1|1635733_1635919_+|hypothetical-protein
MGFLETIAESHRFASLGCFVFLVLLVYQLLKMIIAKSTRFNFSIKLFKYEITITIDDGKTN
>NZ_CP013029.1|WP_060552827.1|1635305_1635596_-|hypothetical-protein
MRQTVTRLLPEAFERLAAIKAKYPDMKHTALVGELLKESVSLTPFDNVKGVAEGSKAIRITTGQLELLKAQSAVTGCSMIQVLSAKVHQLADKLGV
>NZ_CP013029.1|WP_060552826.1|1634880_1635306_-|hypothetical-protein
MLCTFDYHAFYRHRGHLVRENNGTWKDLTRNAEPFTHQQLKSRFSRWKNAPADTGDFEIIHTFDYASEDDLHDAIKLIEDFNTSEDVGGDRFKSRGNRYNRDDITQAINAGQSQRYITEKYGISRRQYFYVKSLINKDNSK
>NZ_CP013029.1|WP_060552825.1|1634385_1634694_-|hypothetical-protein
MNNYPMQIMVDQETMNWLIDLNRSGFNVHFLHCFEASSYIDKRTINEIKLDDYVHKLEVTDPYNKRFITEECNRLDLSPEQLLKLNVFLTYQNELNPYGEVM
>NZ_CP013029.1|WP_044501828.1|1633210_1633915_-|hypothetical-protein
MSIRNEHEMIVENRPSALDIHELTLRESFDRAWRESHEVNKGPYIPPEPIEIPRVEIDFSMNEECELDLKLKLQRKYFKDLRDSQEAMRSVYEKIQSKLEDEIDEMAILMELQTNSYAYFSRLDRDGWGYDPVEIGKVIADLPEGQRVVRTERAIRAPHRLSLIVADKSQAELEEIAKEKLMKARENEINLLKSRLAKLISDHQALAKEYRQELAQIISFNDFLSVPREFSKAV
>NZ_CP013029.1|WP_071845684.1|1632972_1633188_-|hypothetical-protein
MIDLTERYETIKSVCENLKLQTKPALRIKTKHQIITSHKPKTRKIPKWCIDRIPSDAQIIGETELHYLVRH
>NZ_CP013029.1|WP_060552824.1|1630620_1632780_-|tape-measure-protein
MAQFKVDDFLIELSFSSQRVLKGLEKAEKQTMQIASRIEKRLNKAFKVNPTPLNDSLKLMEKNVDKTVSKIEQRLKNTKAFKIKTEIEDTLKPLRQPRQPRISGNRAITAAHSVNMSKLGDINPLMAKMFKAQYYSLSGKAGNIGSEKFNAELAKLNQSLRETLNKLRSQTKTTSISNTSDAFNSLASNAIKLSGAFYSVMGALNAYKAIMNAGLKRDSAQRAAKFVLGDKAPEAETFIRGLADKTGLNISEGLSSYAKFAAGAQGSMSQDETQQLFGNATAMSRLMGLSNDELNGILKAFEQMASKGKIQAEELRGQLGDRMAGAFKLFAEALGMTATELDKAMKDGKILSSDTLPKVAKQMGLMIDKAGGWAEVAKSTQTALGKLANNWDDTMVKIFSGSQDELNGFLSSLGNLLSEMGMSSSIAGDAIGGLIDMLKAGVDDIRIFNNHLEGWILQTKKFYYSLDDTKRKLLDEVGDGFINFVKGLAIALSAKTLFSAATGVMSLTRAITTLGTRANQVAGQVATGTLKGVAGGVGSALAIGYADDGYETALALASMIPQIRGVTLGLYALKKALDFMNQEAIKNANMHPSGVGVGSDFNPVYSGDPNKPNVINEGWSKIFNSMGELFNNATMNIARFNHPELNNIKQDSALTSADIQSLRDEISALSKRIQEPVKVSLGGEVAIKPDETSFMTFSSNIYDQYAEATLLSSSFPEDD
>NZ_CP013029.1|WP_032206537.1|1639762_1640869_-|pyrimidine-permease
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAENLGHLKAVAGMTGRNMDPYMGRAFVGNGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAATVIAMLLGFSPKFGALIHTIPAPVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQEP
>NZ_CP013029.1|WP_001028096.1|1640889_1641384_-|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHTTPYGLVWFDRSYHALMRPAC
>NZ_CP013029.1|WP_001001183.1|1641394_1641985_-|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFAGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NZ_CP013029.1|WP_001307099.1|1641994_1642795_-|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPSACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP013029.1|WP_001126780.1|1642802_1643189_-|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP013029.1|WP_001307100.1|1643200_1643893_-|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFAHIA
>NZ_CP013029.1|WP_001352489.1|1643892_1644984_-|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAVRMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP013029.1|WP_032206534.1|1645271_1645910_+|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLVGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEIFFNQTVENVQRIIIEGIRPR
>NZ_CP013029.1|WP_032206532.1|1645949_1649912_-|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLENLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLVDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIATQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELHKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGLTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP013029.1|WP_000979516.1|1649966_1650176_+|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH

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Crispr_ID: NZ_CP013029_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013029_5

3755598-3755688

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACACA	CRISPRCasFinder

1 spacers

cas2,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of NZ_CP013029_5

>merge|NZ_CP013029|5|3755598-3755688|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACACAAGCAGTTAGCAAAAAAACAGCGAATTGAAAACGGTTTATCCCCGCTGGCGCGGGGAACACA

>NZ_CP013029|5|5|3755598-3755688|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACACA	AGCAGTTAGCAAAAAAACAGCGAATTGAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013029.1\|WP_050439355.1\|3761661_3764364_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP013029.1\|WP_000372106.1\|3753318_3754227_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP013029.1\|WP_000246138.1\|3749677_3750388_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP013029.1\|WP_000206407.1\|3758383_3759457_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP013029.1\|WP_001246104.1\|3750911_3751235_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP013029.1\|WP_001295182.1\|3747410_3748172_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP013029.1\|WP_000039841.1\|3764974_3765709_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP013029.1\|WP_001173673.1\|3751284_3751890_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP013029.1\|WP_001219242.1\|3749198_3749678_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP013029.1\|WP_000281454.1\|3756994_3757645_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP013029.1\|WP_000517476.1\|3750406_3750718_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP013029.1\|WP_032207606.1\|3757626_3758373_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP013029.1\|WP_000490402.1\|3754478_3755516_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP013029.1\|WP_032207613.1\|3767494_3769294_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP013029.1\|WP_032207611.1\|3765782_3767495_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP013029.1\|WP_032207604.1\|3748152_3749202_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP013029.1\|WP_000063176.1\|3755783_3756077_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP013029.1\|WP_032207608.1\|3759471_3760005_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP013029.1\|WP_001090361.1\|3751889_3753317_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP013029.1\|WP_000956460.1\|3764557_3764710_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840

Protein	Function_ID	Function_description	E-value
NZ_CP013029.1\|WP_050439355.1\|3761661_3764364_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	9.85319e-179
NZ_CP013029.1\|WP_000372106.1\|3753318_3754227_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP013029.1\|WP_000246138.1\|3749677_3750388_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP013029.1\|WP_000206407.1\|3758383_3759457_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	6.3804e-147
NZ_CP013029.1\|WP_001246104.1\|3750911_3751235_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP013029.1\|WP_001295182.1\|3747410_3748172_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP013029.1\|WP_000039841.1\|3764974_3765709_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.50395e-137
NZ_CP013029.1\|WP_001173673.1\|3751284_3751890_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP013029.1\|WP_001219242.1\|3749198_3749678_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP013029.1\|WP_000281454.1\|3756994_3757645_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.4219e-90
NZ_CP013029.1\|WP_000517476.1\|3750406_3750718_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP013029.1\|WP_032207606.1\|3757626_3758373_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.25986e-47
NZ_CP013029.1\|WP_000490402.1\|3754478_3755516_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP013029.1\|WP_032207613.1\|3767494_3769294_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP013029.1\|WP_032207611.1\|3765782_3767495_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP013029.1\|WP_032207604.1\|3748152_3749202_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP013029.1\|WP_000063176.1\|3755783_3756077_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP013029.1\|WP_032207608.1\|3759471_3760005_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.15223e-29
NZ_CP013029.1\|WP_001090361.1\|3751889_3753317_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP013029.1\|WP_000956460.1\|3764557_3764710_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	4.96653e-13

>NZ_CP013029.1|WP_000490402.1|3754478_3755516_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP013029.1|WP_000372106.1|3753318_3754227_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFIHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP013029.1|WP_001090361.1|3751889_3753317_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP013029.1|WP_001173673.1|3751284_3751890_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP013029.1|WP_001246104.1|3750911_3751235_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP013029.1|WP_000517476.1|3750406_3750718_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP013029.1|WP_000246138.1|3749677_3750388_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP013029.1|WP_001219242.1|3749198_3749678_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP013029.1|WP_032207604.1|3748152_3749202_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFVGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQTLLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP013029.1|WP_001295182.1|3747410_3748172_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP013029.1|WP_000063176.1|3755783_3756077_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP013029.1|WP_000281454.1|3756994_3757645_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRPFVSELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVKGQAEGRDIWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTAPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP013029.1|WP_032207606.1|3757626_3758373_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQIPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDTLRNAYQQYQDHFRKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP013029.1|WP_000206407.1|3758383_3759457_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDSGSPKTVILGGATRLRVSSQSLKRAWRTSELFEQALAGHIGVRSGRIAREAATILIEKGIEDKKAIEWAVEIADYLGKAKKDKKQKNDKKPKDPLTSAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEKDLALLRKDRMAVDIAMFGRMLAKKPGFNVEAACQVAHAFGVSETIVENDFFTAVDDLRQASEDAGAGHVDETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLEVAVQRITTLRENMNTVYEQKTDYASFDVMNKQGSMKDVLDFICA
>NZ_CP013029.1|WP_032207608.1|3759471_3760005_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKDEHKVALRKWHEELQDKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMKKGRFTRLLAVKTPDDLLRQLRRAVKLLNGSVNLDSLAEGVFRWCQESDDLLNHYRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP013029.1|WP_050439355.1|3761661_3764364_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKNRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLVQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMGRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGLQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDSSQRAGKVLICTQVLEQSVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>NZ_CP013029.1|WP_000956460.1|3764557_3764710_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP013029.1|WP_000039841.1|3764974_3765709_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP013029.1|WP_032207611.1|3765782_3767495_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVSTTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP013029.1|WP_032207613.1|3767494_3769294_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAVTPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQTAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY

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Crispr_ID: NZ_CP013029_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013029_6

3780819-3780902

Unclear

I-E

Consensus_repeat	Method
TTATCCCCGCTGACGCGGGGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013029_6

>merge|NZ_CP013029|6|3780819-3780902|CRISPRCasFinder
TTATCCCCGCTGACGCGGGGAACATAAGTTCGACAACTTAAAAAATGATAACAAGTCCGGTTTATCCCCGCTGGCGCGGGGAAC

>NZ_CP013029|6|6|3780819-3780902|CRISPRCasFinder
TTATCCCCGCTGACGCGGGGAAC	ATAAGTTCGACAACTTAAAAAATGATAACAAGTCCGGT
TTATCCCCGCTGGCGCGGGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013029.1\|WP_032207613.1\|3767494_3769294_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP013029.1\|WP_001164581.1\|3777986_3779264_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP013029.1\|WP_000581937.1\|3787586_3787835_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP013029.1\|WP_001071643.1\|3786389_3787181_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP013029.1\|WP_000186450.1\|3791552_3794309_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP013029.1\|WP_000036723.1\|3783138_3784437_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP013029.1\|WP_032207628.1\|3794540_3795881_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP013029.1\|WP_032207618.1\|3773170_3773950_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP013029.1\|WP_000147666.1\|3773927_3775337_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP013029.1\|WP_000046800.1\|3790194_3791496_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP013029.1\|WP_032207619.1\|3775358_3776813_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP013029.1\|WP_032207617.1\|3772313_3773174_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP013029.1\|WP_032207620.1\|3776882_3777668_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP013029.1\|WP_000987944.1\|3769609_3769975_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP013029.1\|WP_032207614.1\|3771313_3771574_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP013029.1\|WP_000254738.1\|3787251_3787587_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP013029.1\|WP_032207616.1\|3771590_3772166_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP013029.1\|WP_032207625.1\|3787912_3790147_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP013029.1\|WP_032207621.1\|3781243_3781915_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP013029.1\|WP_000210878.1\|3784524_3786162_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437

Protein	Function_ID	Function_description	E-value
NZ_CP013029.1\|WP_032207613.1\|3767494_3769294_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP013029.1\|WP_001164581.1\|3777986_3779264_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	2.41032e-29
NZ_CP013029.1\|WP_000581937.1\|3787586_3787835_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP013029.1\|WP_001071643.1\|3786389_3787181_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	9.36315e-160
NZ_CP013029.1\|WP_000186450.1\|3791552_3794309_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP013029.1\|WP_000036723.1\|3783138_3784437_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP013029.1\|WP_032207628.1\|3794540_3795881_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP013029.1\|WP_032207618.1\|3773170_3773950_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.20062e-61
NZ_CP013029.1\|WP_000147666.1\|3773927_3775337_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NZ_CP013029.1\|WP_000046800.1\|3790194_3791496_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP013029.1\|WP_032207619.1\|3775358_3776813_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	4.04648e-82
NZ_CP013029.1\|WP_032207617.1\|3772313_3773174_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	2.51177e-87
NZ_CP013029.1\|WP_032207620.1\|3776882_3777668_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	6.87397e-139
NZ_CP013029.1\|WP_000987944.1\|3769609_3769975_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
NZ_CP013029.1\|WP_032207614.1\|3771313_3771574_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.03675e-40
NZ_CP013029.1\|WP_000254738.1\|3787251_3787587_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP013029.1\|WP_032207616.1\|3771590_3772166_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.3567e-86
NZ_CP013029.1\|WP_032207625.1\|3787912_3790147_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP013029.1\|WP_032207621.1\|3781243_3781915_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.57014e-153
NZ_CP013029.1\|WP_000210878.1\|3784524_3786162_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0

>NZ_CP013029.1|WP_001164581.1|3777986_3779264_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP013029.1|WP_032207620.1|3776882_3777668_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQNLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP013029.1|WP_032207619.1|3775358_3776813_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTSENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEENIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP013029.1|WP_000147666.1|3773927_3775337_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP013029.1|WP_032207618.1|3773170_3773950_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMGQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP013029.1|WP_032207617.1|3772313_3773174_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAVKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRGLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP013029.1|WP_032207616.1|3771590_3772166_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICIISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP013029.1|WP_032207614.1|3771313_3771574_+|ferredoxin-family-protein
MSVAHNLWRVADAPHIVPADSVEHQMVQRLINACPAGLFSLTSEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP013029.1|WP_000987944.1|3769609_3769975_+|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP013029.1|WP_032207613.1|3767494_3769294_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAVTPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQTAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NZ_CP013029.1|WP_032207621.1|3781243_3781915_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALELANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP013029.1|WP_000036723.1|3783138_3784437_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP013029.1|WP_000210878.1|3784524_3786162_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP013029.1|WP_001071643.1|3786389_3787181_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVIDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP013029.1|WP_000254738.1|3787251_3787587_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP013029.1|WP_000581937.1|3787586_3787835_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP013029.1|WP_032207625.1|3787912_3790147_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVDHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP013029.1|WP_000046800.1|3790194_3791496_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVAVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQVMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP013029.1|WP_000186450.1|3791552_3794309_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP013029.1|WP_032207628.1|3794540_3795881_-|glucarate-dehydratase
MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGDRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGRTFDNKRPCMVR

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Crispr_ID: NZ_CP013029_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013029_7

4200271-4200391

Orphan

Consensus_repeat	Method
CACCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013029_7

>merge|NZ_CP013029|7|4200271-4200391|CRISPRCasFinder
CACCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCATCAGGTACAAAACACAACAACATCAACAAGTTGAGCACCCCGTAGGCCGGATAAGGTGCGCCAGCATCGCATCCGGCA

>NZ_CP013029|7|7|4200271-4200391|CRISPRCasFinder
CACCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCA	TCAGGTACAAAACACAACAACATCAACAAGTTGAG
CACCCCGTAGGCCGGATAAGGTGCGCCAGCATCGCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013029.1\|WP_000548347.1\|4210109_4211099_-\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	unknown	unknown	gnl\|CDD\|236317
NZ_CP013029.1\|WP_000104211.1\|4211197_4212136_-\|transcriptional-regulator-TdcA	unknown	unknown	gnl\|CDD\|182391
NZ_CP013029.1\|WP_001297162.1\|4207522_4208731_-\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
NZ_CP013029.1\|WP_001198807.1\|4197903_4198260_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP013029.1\|WP_001297155.1\|4195466_4195949_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP013029.1\|WP_000107720.1\|4208756_4210088_-\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191
NZ_CP013029.1\|WP_000719990.1\|4204791_4205181_-\|enamine/imine-deaminase	unknown	unknown	gnl\|CDD\|105214
NZ_CP013029.1\|WP_001041010.1\|4198310_4199207_-\|DNA-binding-transcriptional-regulator-YhaJ	unknown	unknown	gnl\|CDD\|176122
NZ_CP013029.1\|WP_000031415.1\|4194369_4194675_+\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
NZ_CP013029.1\|WP_000096086.1\|4195071_4195371_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372871
NZ_CP013029.1\|WP_000460519.1\|4200411_4201722_-\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NZ_CP013029.1\|WP_000145828.1\|4212323_4212668_+\|DNA-binding-transcriptional-activator-TdcR	unknown	unknown	gnl\|CDD\|236909
NZ_CP013029.1\|WP_001295544.1\|4200035_4200200_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013029.1\|WP_032208124.1\|4203355_4204720_-\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
NZ_CP013029.1\|WP_000531201.1\|4196018_4197005_+\|glutathionyl-hydroquinone-reductase-YqjG	unknown	unknown	gnl\|CDD\|223512
NZ_CP013029.1\|WP_000861734.1\|4205194_4207489_-\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	unknown	unknown	gnl\|CDD\|153087
NZ_CP013029.1\|WP_000401598.1\|4201749_4203081_-\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NZ_CP013029.1\|WP_000384145.1\|4197297_4197663_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP013029.1\|WP_000633577.1\|4199311_4200013_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP013029.1\|WP_000785722.1\|4194677_4195082_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227681

Protein	Function_ID	Function_description	E-value
NZ_CP013029.1\|WP_000548347.1\|4210109_4211099_-\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
NZ_CP013029.1\|WP_000104211.1\|4211197_4212136_-\|transcriptional-regulator-TdcA	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
NZ_CP013029.1\|WP_001297162.1\|4207522_4208731_-\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
NZ_CP013029.1\|WP_001198807.1\|4197903_4198260_+\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.17161e-38
NZ_CP013029.1\|WP_001297155.1\|4195466_4195949_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.8408e-29
NZ_CP013029.1\|WP_000107720.1\|4208756_4210088_-\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
NZ_CP013029.1\|WP_000719990.1\|4204791_4205181_-\|enamine/imine-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	2.43767e-83
NZ_CP013029.1\|WP_001041010.1\|4198310_4199207_-\|DNA-binding-transcriptional-regulator-YhaJ	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.2986e-51
NZ_CP013029.1\|WP_000031415.1\|4194369_4194675_+\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.46625e-41
NZ_CP013029.1\|WP_000096086.1\|4195071_4195371_+\|hypothetical-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	6.11451e-20
NZ_CP013029.1\|WP_000460519.1\|4200411_4201722_-\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0
NZ_CP013029.1\|WP_000145828.1\|4212323_4212668_+\|DNA-binding-transcriptional-activator-TdcR	gnl\|CDD\|236909	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional.	6.78402e-66
NZ_CP013029.1\|WP_032208124.1\|4203355_4204720_-\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
NZ_CP013029.1\|WP_000531201.1\|4196018_4197005_+\|glutathionyl-hydroquinone-reductase-YqjG	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP013029.1\|WP_000861734.1\|4205194_4207489_-\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP013029.1\|WP_000401598.1\|4201749_4203081_-\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	2.53913e-167
NZ_CP013029.1\|WP_000384145.1\|4197297_4197663_+\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	3.68376e-42
NZ_CP013029.1\|WP_000633577.1\|4199311_4200013_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.02982e-67
NZ_CP013029.1\|WP_000785722.1\|4194677_4195082_+\|hypothetical-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	2.73939e-60

>NZ_CP013029.1|WP_001295544.1|4200035_4200200_+|hypothetical-protein
MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA
>NZ_CP013029.1|WP_000633577.1|4199311_4200013_+|pirin-family-protein
MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVWLHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV
>NZ_CP013029.1|WP_001041010.1|4198310_4199207_-|DNA-binding-transcriptional-regulator-YhaJ
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFSGK
>NZ_CP013029.1|WP_001198807.1|4197903_4198260_+|DUF805-domain-containing-protein
MQWYLSVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLELPYLSMLYLLATFLPVLALAIRRLHDTDRSGAWALLFFVPFIGWLVLLVFFCTEGTSGSNRYGNDPKFGSN
>NZ_CP013029.1|WP_000384145.1|4197297_4197663_+|DUF805-domain-containing-protein
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP
>NZ_CP013029.1|WP_000531201.1|4196018_4197005_+|glutathionyl-hydroquinone-reductase-YqjG
MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG
>NZ_CP013029.1|WP_001297155.1|4195466_4195949_+|DoxX-family-protein
MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARILMPILFITAGWGKITAYSGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
>NZ_CP013029.1|WP_000096086.1|4195071_4195371_+|hypothetical-protein
MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWNMLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG
>NZ_CP013029.1|WP_000785722.1|4194677_4195082_+|hypothetical-protein
MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ
>NZ_CP013029.1|WP_000031415.1|4194369_4194675_+|DUF883-domain-containing-protein
MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR
>NZ_CP013029.1|WP_000460519.1|4200411_4201722_-|serine-dehydratase-subunit-alpha-family-protein
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
>NZ_CP013029.1|WP_000401598.1|4201749_4203081_-|HAAAP-family-serine/threonine-permease
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS
>NZ_CP013029.1|WP_032208124.1|4203355_4204720_-|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAVGGRVVTAPTNGACGIIPAVLAYYDKSRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCD
>NZ_CP013029.1|WP_000719990.1|4204791_4205181_-|enamine/imine-deaminase
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA
>NZ_CP013029.1|WP_000861734.1|4205194_4207489_-|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>NZ_CP013029.1|WP_001297162.1|4207522_4208731_-|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA
>NZ_CP013029.1|WP_000107720.1|4208756_4210088_-|threonine/serine-transporter-TdcC
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF
>NZ_CP013029.1|WP_000548347.1|4210109_4211099_-|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>NZ_CP013029.1|WP_000104211.1|4211197_4212136_-|transcriptional-regulator-TdcA
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>NZ_CP013029.1|WP_000145828.1|4212323_4212668_+|DNA-binding-transcriptional-activator-TdcR
MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLISKFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013029_2	2.1\|550652\|54\|NZ_CP013029\|CRISPRCasFinder	550652-550705	54	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	165411-165464	1	0.981
NZ_CP013029_4	4.1\|1639584\|40\|NZ_CP013029\|CRISPRCasFinder	1639584-1639623	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_CP013029_1	1.1\|292392\|57\|NZ_CP013029\|CRISPRCasFinder	292392-292448	57	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15004-15060	11	0.807
NZ_CP013029_2	2.1\|550652\|54\|NZ_CP013029\|CRISPRCasFinder	550652-550705	54	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	72431-72484	12	0.778
NZ_CP013029_1	1.1\|292392\|57\|NZ_CP013029\|CRISPRCasFinder	292392-292448	57	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12104-12160	13	0.772
NZ_CP013029_1	1.1\|292392\|57\|NZ_CP013029\|CRISPRCasFinder	292392-292448	57	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3364-3420	16	0.719
NZ_CP013029_1	1.1\|292392\|57\|NZ_CP013029\|CRISPRCasFinder	292392-292448	57	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3363-3419	16	0.719
NZ_CP013029_1	1.1\|292392\|57\|NZ_CP013029\|CRISPRCasFinder	292392-292448	57	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3363-3419	16	0.719
NZ_CP013029_1	1.1\|292392\|57\|NZ_CP013029\|CRISPRCasFinder	292392-292448	57	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3363-3419	16	0.719

1. spacer 2.1|550652|54|NZ_CP013029|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.981

gaatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	CRISPR spacer
caatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	Protospacer
 *****************************************************

2. spacer 4.1|1639584|40|NZ_CP013029|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

acagcacagcggggggaatttcaagaatgacccgcagcgc	CRISPR spacer
acagcacagcgggggtaatttcaagaatgacccgcagcgc	Protospacer
*************** ************************

3. spacer 1.1|292392|57|NZ_CP013029|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.807

-acaataacagcattgcctgatgcgacgctcgcgcgtcttatcaggcctacgagttca	CRISPR spacer
aacaattacca-ggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccg	Protospacer
 ***** ** . . **************** ************* *********..*.

4. spacer 2.1|550652|54|NZ_CP013029|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 12, identity: 0.778

gaatgccggatgcgctttgcttatccggcctacaaaatcgc-----agcgtgtaggcca	CRISPR spacer
tactgccggatgcgctttgcttatccggcctacaataccgcgaattaatttgta-----	Protospacer
 * ******************************** *.***     *.. ****

5. spacer 1.1|292392|57|NZ_CP013029|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 13, identity: 0.772

-----acaataacagcattgcctgatgcgacgctcgcgcgtcttatcaggcctacgagtt	CRISPR spacer
ctccgacgtt-----cggtgcctgatgcgacgctggcgcgtcttatcaggcctacgagtc	Protospacer
     **. *     *. **************** ************************.

6. spacer 1.1|292392|57|NZ_CP013029|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 16, identity: 0.719

acaataacagcat-----tgcctgatgcgacgctcgcgcgtcttatcaggcctacgagtt	CRISPR spacer
-----agttgtacgcaggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcc	Protospacer
     *.. *.*.     **************** ************* *********..

7. spacer 1.1|292392|57|NZ_CP013029|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 16, identity: 0.719

acaataacagcat-----tgcctgatgcgacgctcgcgcgtcttatcaggcctacgagtt	CRISPR spacer
-----agttgtacgcaggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcc	Protospacer
     *.. *.*.     **************** ************* *********..

8. spacer 1.1|292392|57|NZ_CP013029|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 16, identity: 0.719

acaataacagcat-----tgcctgatgcgacgctcgcgcgtcttatcaggcctacgagtt	CRISPR spacer
-----agttgtacgcaggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcc	Protospacer
     *.. *.*.     **************** ************* *********..

9. spacer 1.1|292392|57|NZ_CP013029|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 16, identity: 0.719

acaataacagcat-----tgcctgatgcgacgctcgcgcgtcttatcaggcctacgagtt	CRISPR spacer
-----agttgtacgcaggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcc	Protospacer
     *.. *.*.     **************** ************* *********..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

126714 : 204181

Vibrio_phage(13.33%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000004476.1\|126714_127662_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	3.2e-06	39.5
WP_000114986.1\|127676_128186_-	peptide deformylase	E3SLL2	Synechococcus_phage	1.1e-18	41.1
WP_000460680.1\|129410_129884_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_032206968.1\|129912_130455_+	hypothetical protein	NA	NA	NA	NA
WP_001365384.1\|130459_131032_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_000451227.1\|131036_131855_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_032206969.1\|131851_132109_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_001286214.1\|132084_132639_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_000078316.1\|138520_139279_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-29	38.1
WP_001364972.1\|139286_140390_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_106888148.1\|140442_141656_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
WP_032208684.1\|142898_152570_-	lymphostatin Efa1/LifA	NA	NA	NA	NA
WP_032208683.1\|154444_155119_-	type III secretion system effector cysteine methyltransferase NleE	NA	NA	NA	NA
WP_000953023.1\|155167_156157_-	type III secretion system effector arginine glycosyltransferase NleB	Q8HAB2	Salmonella_phage	4.9e-98	58.5
WP_032208682.1\|156764_158414_-	ShET2/EspL2 family type III secretion system effector toxin	NA	NA	NA	NA
WP_106918773.1\|159264_160538_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	9.8e-176	98.3
WP_000169527.1\|160783_161083_+\|transposase	transposase	NA	NA	NA	NA
WP_000878219.1\|161079_161946_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
WP_032208316.1\|163051_163627_-	transcriptional regulator	NA	NA	NA	NA
WP_032208314.1\|163663_165361_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_000883400.1\|165336_165675_-	divalent cation tolerance protein CutA	NA	NA	NA	NA
WP_000961959.1\|165790_167092_-	anaerobic C4-dicarboxylate transporter DcuA	NA	NA	NA	NA
WP_000069437.1\|167209_168646_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_001267448.1\|168982_169459_+	membrane protein FxsA	NA	NA	NA	NA
WP_032208312.1\|169474_170731_-	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA
WP_001026276.1\|171007_171301_+	co-chaperone GroES	K4F9I2	Cronobacter_phage	9.2e-13	45.4
WP_000729117.1\|171344_172991_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	5.3e-190	68.9
WP_000558209.1\|173128_173482_+	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_032208310.1\|173684_174554_-	hypothetical protein	NA	NA	NA	NA
WP_032208308.1\|174943_175972_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_000257278.1\|176013_176580_+	elongation factor P	NA	NA	NA	NA
WP_000977757.1\|176631_176757_+	lipoprotein antitoxin entericidin A	NA	NA	NA	NA
WP_000239596.1\|176867_177014_+	lipoprotein toxin entericidin B	NA	NA	NA	NA
WP_000118482.1\|177188_177506_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_001238369.1\|177502_178036_-	lipocalin Blc	A0A1W6JNX6	Morganella_phage	2.7e-47	55.0
WP_001339477.1\|178124_179258_-	BlaEC family class C beta-lactamase	NA	NA	NA	NA
WP_001299198.1\|179320_179680_-	fumarate reductase subunit FrdD	NA	NA	NA	NA
WP_000208757.1\|179690_180086_-	fumarate reductase subunit FrdC	NA	NA	NA	NA
WP_000829498.1\|180096_180831_-	fumarate reductase iron-sulfur protein	NA	NA	NA	NA
WP_001192973.1\|180823_182632_-	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA
WP_000004771.1\|182956_183934_+	elongation factor P--(R)-beta-lysine ligase	A0A2K9KZX5	Tupanvirus	6.8e-28	28.2
WP_032208307.1\|184152_185655_+	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA
WP_032208306.1\|185805_189129_-	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA
WP_000934912.1\|189150_190119_-	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_000041970.1\|190215_191268_-	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_001295188.1\|191362_191908_+	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.2e-28	40.4
WP_010723271.1\|192770_192824_+	hypothetical protein	NA	NA	NA	NA
WP_001294219.1\|192806_193946_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_072097076.1\|193944_195492_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_000981977.1\|195463_195925_+\|tRNA	tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE	NA	NA	NA	NA
WP_032208305.1\|195943_197278_+	N-acetylmuramoyl-L-alanine amidase AmiB	A0A067ZJB6	Vibrio_phage	8.8e-18	31.0
WP_001122503.1\|197287_199135_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	4.4e-60	41.3
WP_032208303.1\|199127_200078_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_001051883.1\|200163_200472_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_000460360.1\|200548_201829_+	GTPase HflX	NA	NA	NA	NA
WP_000312488.1\|201914_203174_+\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5
WP_001232412.1\|203176_204181_+\|protease	protease modulator HflC	NA	NA	NA	NA

DBSCAN-SWA_2

399503 : 483431

Stx2-converting_phage(43.42%)

tRNA,terminase,integrase,head,capsid,protease,holin,tail

attL 392129:392144|attR 462289:462304

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
392129:392144	attL	NA	NA	NA	NA
WP_001218294.1\|399503_400727_+\|integrase	site-specific integrase	A0A291AWU1	Escherichia_phage	1.3e-233	98.0
WP_001400035.1\|403250_404069_-	hypothetical protein	A0A0H4IU61	Shigella_phage	1.7e-120	96.5
WP_155701557.1\|404065_404398_-	hypothetical protein	A0A0P0ZBM8	Stx2-converting_phage	4.9e-63	98.2
WP_001289923.1\|404582_405353_-	ead/Ea22-like family protein	H6WZG2	Escherichia_phage	4.0e-140	97.7
WP_000763383.1\|405349_405571_-	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.9e-35	100.0
WP_001447688.1\|405669_405951_-	hypothetical protein	Q08J56	Stx2-converting_phage	6.5e-48	100.0
WP_000548528.1\|405961_406153_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	5.6e-27	100.0
WP_000682304.1\|406125_406308_-	DUF1317 domain-containing protein	A0A0P0ZD61	Stx2-converting_phage	7.4e-29	100.0
WP_000186781.1\|406304_406985_-	YqaJ viral recombinase family protein	A0A0P0ZCQ7	Stx2-converting_phage	6.0e-132	99.1
WP_000100847.1\|406981_407767_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995407.1\|407772_408069_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	5.2e-48	98.0
WP_000361826.1\|408144_408288_-	host cell division inhibitory peptide Kil	A0A0P0ZC96	Stx2-converting_phage	3.5e-18	97.9
WP_001198858.1\|408280_408421_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	3.3e-21	100.0
WP_000065373.1\|408493_408862_-	DUF2528 family protein	M1FPD2	Enterobacteria_phage	7.6e-65	99.2
WP_000095081.1\|409042_409666_-	hypothetical protein	A0A2D1GLY1	Escherichia_phage	2.8e-107	96.6
WP_000198445.1\|409727_410111_-	hypothetical protein	Q08J47	Stx2-converting_phage	3.9e-64	100.0
WP_000687675.1\|410618_411023_-	hypothetical protein	A0A0P0ZDD3	Stx2-converting_phage	1.6e-68	100.0
WP_001082382.1\|411019_411676_-	transcriptional regulator	A0A0P0ZCT8	Stx2-converting_phage	2.6e-116	100.0
WP_000866443.1\|411672_411960_-	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	1.6e-49	100.0
WP_000428098.1\|412096_412801_-	helix-turn-helix transcriptional regulator	A0A0P0ZE37	Stx2-converting_phage	1.1e-133	100.0
WP_000064148.1\|412914_413148_+	hypothetical protein	A0A0P0ZDD7	Stx2-converting_phage	8.0e-36	100.0
WP_000438541.1\|413286_413583_+	hypothetical protein	C1JJ56	Enterobacteria_phage	8.9e-48	100.0
WP_032208536.1\|414483_415185_+	Replication protein P	A0A0P0ZD31	Stx2-converting_phage	6.4e-129	98.7
WP_000145907.1\|415181_415472_+	protein ren	A0A0N6WES4	Escherichia_phage	1.6e-46	99.0
WP_001000127.1\|415542_415821_+	hypothetical protein	Q9ZWY1	Enterobacteria_phage	3.4e-49	100.0
WP_000103679.1\|415953_416169_+	hypothetical protein	A0A1I9LJP7	Stx_converting_phage	1.3e-32	100.0
WP_001281772.1\|416179_416416_+	restriction alleviation protein, Lar family	Q8HA09	Enterobacteria_phage	1.2e-39	100.0
WP_000814576.1\|416372_416819_+	recombination protein NinB	A0A0N7C2V1	Escherichia_phage	2.4e-81	100.0
WP_000153280.1\|416815_417343_+	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
WP_001254256.1\|417339_417522_+	NinE family protein	A0A0N7C1X3	Escherichia_phage	5.7e-29	100.0
WP_000211422.1\|417796_418531_+	phage antirepressor Ant	A0A0N7C203	Escherichia_phage	1.9e-123	100.0
WP_001004018.1\|418605_419328_+	DNA-binding protein	B6DZ83	Enterobacteria_phage	3.5e-130	100.0
WP_001107998.1\|419327_419933_+	recombination protein NinG	B6DZ84	Enterobacteria_phage	6.6e-98	100.0
WP_000144759.1\|419929_420124_+	protein ninH	Q6H9W6	Enterobacteria_phage	8.4e-31	100.0
WP_001204852.1\|420116_420551_+	antitermination protein	Q777W5	Enterobacteria_phage	3.6e-82	100.0
WP_000691354.1\|421057_422005_+	Shiga toxin Stx1 subunit A	Q777W4	Enterobacteria_phage	3.2e-171	100.0
WP_000752026.1\|422014_422284_+	Shiga toxin Stx1a subunit B	Q7AYI7	Enterobacteria_phage	1.6e-43	100.0
WP_032362364.1\|422783_424634_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	99.5
WP_000411802.1\|425081_425288_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	2.4e-31	100.0
WP_000731236.1\|425292_425637_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.0e-58	100.0
WP_000992166.1\|425687_426221_+	lysozyme	Q6H9V6	Enterobacteria_phage	5.6e-101	97.7
WP_001056806.1\|426491_427061_+	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000539794.1\|427060_427207_+	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	1.7e-15	95.8
WP_012816791.1\|427434_427620_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000095749.1\|428044_428272_-	DUF3950 domain-containing protein	A0A0P0ZCA1	Stx2-converting_phage	3.9e-35	100.0
WP_001303046.1\|428313_428679_+	HNH endonuclease	A0A0P0ZCH0	Stx2-converting_phage	2.0e-65	100.0
WP_000958390.1\|428967_429531_+\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.5e-88	98.9
WP_001365116.1\|429527_431189_+\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	0.0e+00	99.8
WP_060552799.1\|431252_433190_+\|capsid	phage major capsid protein	A0A0P0ZCT9	Stx2-converting_phage	0.0e+00	98.6
WP_001063096.1\|433234_433456_+	hypothetical protein	H6WZL1	Escherichia_phage	3.4e-36	100.0
WP_000125988.1\|435982_436309_+\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	7.0e-54	100.0
WP_001007905.1\|436318_436669_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573391.1\|436665_437112_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_000133391.1\|437108_437453_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	9.4e-57	99.1
WP_001275510.1\|437511_438228_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	1.1e-128	99.6
WP_001030063.1\|438233_438608_+\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_122993099.1\|438703_438913_+	DUF4035 domain-containing protein	A0A0P0ZED8	Stx2-converting_phage	3.3e-33	98.6
WP_032207138.1\|438960_442203_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	92.7
WP_000807944.1\|442195_442537_+\|tail	phage tail protein	H6WZM2	Escherichia_phage	1.2e-61	98.2
WP_001357740.1\|442536_443235_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	8.1e-132	98.7
WP_000194767.1\|443245_443989_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	3.8e-148	97.6
WP_122994371.1\|443934_444567_+\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	2.5e-103	98.1
WP_060552800.1\|444805_448219_+	host specificity protein J	A0A0P0ZEQ8	Stx2-converting_phage	0.0e+00	85.8
WP_001230466.1\|448288_448888_+	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	2.0e-110	99.0
WP_015740448.1\|448952_450266_+\|tail	tail fiber protein	A0A0P0ZCC1	Stx2-converting_phage	2.7e-80	97.9
WP_001101699.1\|450267_450537_+\|tail	phage tail protein	Q6H9S8	Enterobacteria_phage	1.9e-44	98.9
WP_001121225.1\|450821_451472_-	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	1.2e-121	99.1
WP_001217548.1\|452064_452325_-	DinI-like family protein	A5LH55	Enterobacteria_phage	8.1e-37	95.3
WP_000202564.1\|452544_454131_+	peptide chain release factor 3	D0R0F5	Streptococcus_phage	5.3e-30	24.9
WP_001295748.1\|454523_455129_+	molecular chaperone OsmY	NA	NA	NA	NA
WP_000490275.1\|455255_455417_+	DUF1328 domain-containing protein	A0A0N7CBR2	Salmonella_phage	1.8e-10	64.2
WP_001299799.1\|455538_456612_+	patatin family protein	NA	NA	NA	NA
WP_000563058.1\|456608_457391_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_001088405.1\|457503_458367_-	YjjW family glycine radical enzyme activase	NA	NA	NA	NA
WP_001143257.1\|458338_459889_-	YjjI family glycine radical enzyme	NA	NA	NA	NA
WP_001295412.1\|460146_460926_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_032205954.1\|461052_462375_+	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	2.3e-79	39.8
462289:462304	attR	NA	NA	NA	NA
WP_032205953.1\|462426_463650_+	phosphopentomutase	NA	NA	NA	NA
WP_000224877.1\|463729_464449_+	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_000105889.1\|464904_465921_-	lipoate--protein ligase LplA	NA	NA	NA	NA
WP_000124615.1\|465948_466593_-	YtjB family periplasmic protein	NA	NA	NA	NA
WP_032205952.1\|466698_467667_+	phosphoserine phosphatase	NA	NA	NA	NA
WP_001029697.1\|467715_469098_+	DNA repair protein RadA	NA	NA	NA	NA
WP_000093810.1\|469118_470351_+	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	A0A0C5K935	Enterococcus_phage	1.6e-82	42.6
WP_000046749.1\|470657_472325_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	3.7e-42	26.4
WP_000409459.1\|472535_474473_+	murein transglycosylase	A0A1P8CWQ1	Bacillus_phage	4.0e-11	34.8
WP_000068679.1\|474562_474889_+	trp operon repressor	NA	NA	NA	NA
WP_032205957.1\|475035_475548_-	non-canonical purine NTP phosphatase	NA	NA	NA	NA
WP_032205951.1\|475599_476247_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB	NA	NA	NA	NA
WP_000371666.1\|476243_477113_-	MDR efflux pump AcrAB transcriptional activator RobA	NA	NA	NA	NA
WP_000875487.1\|477323_477797_+	protein CreA	NA	NA	NA	NA
WP_001188659.1\|477809_478499_+	two-component system response regulator CreB	W8CYM9	Bacillus_phage	8.8e-30	35.3
WP_001219614.1\|478498_479923_+	two-component system sensor histidine kinase CreC	Q8QKV7	Ectocarpus_siliculosus_virus	1.6e-09	20.4
WP_032205950.1\|479980_481333_+	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_001194358.1\|481392_482109_-	two-component system response regulator ArcA	NA	NA	NA	NA
WP_001303782.1\|482204_482345_+	hypothetical protein	NA	NA	NA	NA
WP_001223181.1\|482744_483431_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

975433 : 1034227

Escherichia_phage(30.43%)

transposase,tRNA,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001344277.1\|975433_976057_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_001110573.1\|976027_976714_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-33	35.6
WP_032208352.1\|976710_979125_+	ABC transporter permease	NA	NA	NA	NA
WP_001320180.1\|983743_984004_+	hypothetical protein	NA	NA	NA	NA
WP_001157976.1\|985235_986330_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_032208349.1\|986398_987325_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA
WP_000776388.1\|987554_988037_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_000141276.1\|988114_988930_+	HTH-type transcriptional repressor AllR	NA	NA	NA	NA
WP_032208406.1\|989019_990801_+	glyoxylate carboligase	E4WLQ6	Ostreococcus_tauri_virus	6.0e-38	26.9
WP_032206999.1\|990813_991590_+	hydroxypyruvate isomerase	NA	NA	NA	NA
WP_032208347.1\|992736_994152_+	putative allantoin permease	NA	NA	NA	NA
WP_001302767.1\|995628_996930_+	uracil/xanthine transporter	NA	NA	NA	NA
WP_000706344.1\|996951_998097_+	glycerate 3-kinase	W6LM47	Streptococcus_phage	1.8e-48	41.9
WP_000540946.1\|998324_999110_-	(S)-ureidoglycine aminohydrolase	NA	NA	NA	NA
WP_032208342.1\|1000376_1001426_-	ureidoglycolate dehydrogenase	NA	NA	NA	NA
WP_032208341.1\|1001740_1003408_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA
WP_032208340.1\|1003417_1004677_+	DUF1116 domain-containing protein	NA	NA	NA	NA
WP_001325209.1\|1004687_1005503_+	DUF2877 domain-containing protein	NA	NA	NA	NA
WP_000855389.1\|1005499_1006393_+	carbamate kinase	NA	NA	NA	NA
WP_000815537.1\|1006529_1007597_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_032208338.1\|1007593_1008103_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_032208336.1\|1008220_1008943_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_000256002.1\|1008945_1009440_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_032208334.1\|1009613_1010999_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143552.1\|1011034_1011556_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|1011663_1011876_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729160.1\|1011877_1012744_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000776555.1\|1013224_1013767_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988364.1\|1013986_1014679_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_032208333.1\|1014709_1017319_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_032208332.1\|1018865_1019498_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
WP_000088311.1\|1020547_1020850_+\|transposase	transposase	NA	NA	NA	NA
WP_060552805.1\|1020885_1021704_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.5e-65	45.2
WP_106888148.1\|1022012_1023225_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
WP_071887448.1\|1023228_1023345_-	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	1.0e-07	84.4
WP_060552806.1\|1023335_1024016_-	YqaJ viral recombinase family protein	A0A0P0ZCQ7	Stx2-converting_phage	1.0e-131	99.1
WP_000100847.1\|1024012_1024798_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995409.1\|1024803_1025100_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	6.2e-49	99.0
WP_000372937.1\|1025175_1025319_-	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	1.2e-18	100.0
WP_001198861.1\|1025287_1025452_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
WP_047088220.1\|1025524_1025893_-	DUF2528 family protein	M1FPD2	Enterobacteria_phage	2.2e-64	98.4
WP_032207130.1\|1026088_1026538_-	hypothetical protein	I6RSN8	Salmonella_phage	1.3e-69	88.6
WP_032207131.1\|1026596_1026869_-	hypothetical protein	A0A0N7C217	Escherichia_phage	9.7e-41	98.9
WP_032208417.1\|1028508_1028970_-	hypothetical protein	G9L674	Escherichia_phage	3.8e-77	99.3
WP_000885926.1\|1029037_1029379_-	DUF3024 domain-containing protein	G9L675	Escherichia_phage	2.5e-62	99.1
WP_001302016.1\|1029388_1030084_-	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	8.6e-134	100.0
WP_000067727.1\|1030158_1030374_+	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_032208418.1\|1030515_1030818_+	hypothetical protein	A4KWW1	Enterobacteria_phage	3.3e-42	97.8
WP_078164212.1\|1032779_1033118_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	3.7e-05	41.9
WP_129014751.1\|1033197_1033857_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_032207501.1\|1033921_1034227_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5

DBSCAN-SWA_4

1260147 : 1270077

Enterobacteria_phage(50.0%)

transposase,tail,holin,integrase

attL 1260060:1260074|attR 1274167:1274181

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1260060:1260074	attL	NA	NA	NA	NA
WP_064717027.1\|1260147_1261029_-\|integrase	tyrosine-type recombinase/integrase	Q9MCR4	Enterobacteria_phage	9.5e-162	99.7
WP_001235472.1\|1262282_1262906_+	antitermination protein	K7PM87	Enterobacteria_phage	2.2e-112	98.1
WP_001302581.1\|1263158_1263902_+	hypothetical protein	NA	NA	NA	NA
WP_000499454.1\|1263987_1264146_+	DUF3927 family protein	NA	NA	NA	NA
WP_032208531.1\|1264768_1264984_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	5.5e-31	97.2
WP_000088311.1\|1265394_1265697_+\|transposase	transposase	NA	NA	NA	NA
WP_060552815.1\|1265732_1266551_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.9e-65	44.9
WP_060552816.1\|1266578_1266734_+\|tail	phage tail protein	B6DZB8	Enterobacteria_phage	1.1e-17	100.0
WP_085972493.1\|1268803_1270077_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
1274167:1274181	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1389662 : 1469011

Escherichia_phage(36.21%)

tRNA,integrase,portal,terminase,head,plate,transposase,protease,capsid,holin,lysis,tail

attL 1401978:1401994|attR 1478508:1478524

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032208065.1\|1389662_1390901_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-126	52.7
WP_001206970.1\|1391319_1391529_+	AlpA family phage regulatory protein	A0A2H4JB58	uncultured_Caudovirales_phage	2.2e-16	67.9
WP_032208063.1\|1391877_1392057_-	hypothetical protein	NA	NA	NA	NA
WP_106918783.1\|1392462_1392789_+	host cell division inhibitor Icd-like protein	A0A1C9IHV9	Salmonella_phage	1.7e-07	55.7
WP_032208062.1\|1392781_1393102_+	hypothetical protein	NA	NA	NA	NA
WP_032208060.1\|1393108_1393408_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_001475690.1\|1395505_1395751_+	hypothetical protein	NA	NA	NA	NA
WP_032208058.1\|1395747_1396158_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_024166342.1\|1396168_1396441_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001475693.1\|1396566_1396791_+	hypothetical protein	NA	NA	NA	NA
WP_001475695.1\|1397087_1398245_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.6e-137	64.9
WP_001475696.1\|1398300_1398858_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	4.1e-62	64.1
WP_032208055.1\|1398859_1400071_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	5.6e-189	79.2
WP_016241300.1\|1400067_1400406_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	2.5e-30	51.8
WP_000134111.1\|1400402_1400699_+	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	4.0e-32	65.3
WP_001145908.1\|1400698_1401139_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	7.8e-56	67.8
WP_024166058.1\|1401122_1401305_+	hypothetical protein	NA	NA	NA	NA
WP_000113648.1\|1401427_1401784_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
1401978:1401994	attL	NA	NA	NA	NA
WP_032208053.1\|1403441_1403723_+	hypothetical protein	NA	NA	NA	NA
WP_000520781.1\|1404617_1404938_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_032208047.1\|1404968_1407245_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.1e-165	42.4
WP_001040187.1\|1407989_1408208_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_032208045.1\|1408492_1409197_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001202188.1\|1409238_1410960_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.9e-20	25.2
WP_032208042.1\|1410960_1412727_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	1.6e-22	24.0
WP_000537418.1\|1412849_1413815_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	8.5e-63	44.6
WP_000228473.1\|1414358_1414853_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_032208039.1\|1414987_1418821_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.1e-86	48.7
WP_001295343.1\|1418975_1419587_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000067756.1\|1419597_1420941_+	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	3.6e-80	40.8
WP_032208036.1\|1421031_1422324_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.6e-95	44.7
WP_000850303.1\|1422561_1425006_+	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
WP_000213098.1\|1425016_1425634_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_032208034.1\|1426533_1427160_-	hydrolase	NA	NA	NA	NA
WP_000109295.1\|1427473_1428622_+	MFS transporter	NA	NA	NA	NA
WP_000918506.1\|1428831_1430262_+	amino acid permease	NA	NA	NA	NA
WP_032208033.1\|1430262_1431171_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001190367.1\|1431270_1431861_+	NAD(P)H oxidoreductase	NA	NA	NA	NA
WP_000067977.1\|1431942_1432740_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	1.3e-21	26.6
WP_032208032.1\|1432771_1433767_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	6.0e-189	99.4
WP_024182500.1\|1433860_1434160_-	helix-turn-helix transcriptional regulator	Q1JS29	Enterobacteria_phage	3.8e-38	79.8
WP_032208031.1\|1434628_1435225_+	hypothetical protein	NA	NA	NA	NA
WP_032208029.1\|1435227_1435434_-	hypothetical protein	NA	NA	NA	NA
WP_129014754.1\|1435505_1436778_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	5.4e-174	97.3
WP_032208026.1\|1437036_1437537_+	hypothetical protein	M1SV55	Escherichia_phage	3.8e-91	98.8
WP_032208023.1\|1437600_1437825_+	DUF2732 family protein	S4TP68	Salmonella_phage	8.8e-32	97.3
WP_001277958.1\|1437824_1438127_+	DUF5405 family protein	U5N0U2	Enterobacteria_phage	5.0e-46	98.0
WP_001113264.1\|1438126_1438351_+	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
WP_032208021.1\|1438347_1438623_+	DUF5405 family protein	M1TAP2	Escherichia_phage	2.5e-44	97.8
WP_032208018.1\|1440905_1441349_+	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	3.1e-76	93.9
WP_085972493.1\|1441482_1442756_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_001620979.1\|1442964_1443906_-	hypothetical protein	Q2P9W7	Enterobacteria_phage	5.4e-147	81.5
WP_032206254.1\|1444332_1445367_-\|portal	phage portal protein	A0A0F7LDI7	Escherichia_phage	9.3e-201	99.4
WP_032206253.1\|1445366_1447139_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.2
WP_032206252.1\|1447312_1448167_+\|capsid	GPO family capsid scaffolding protein	Q94MI4	Enterobacteria_phage	2.4e-130	95.1
WP_032206251.1\|1448225_1449299_+\|capsid	phage major capsid protein, P2 family	Q94MK2	Enterobacteria_phage	2.8e-200	99.4
WP_032206249.1\|1449302_1450046_+\|terminase	terminase endonuclease subunit	Q94MK1	Enterobacteria_phage	3.6e-122	99.6
WP_032206247.1\|1450145_1450652_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.0e-88	99.4
WP_032206246.1\|1450651_1450855_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	4.4e-30	98.5
WP_000123123.1\|1450858_1451140_+\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
WP_001530534.1\|1451139_1451637_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	9.0e-93	99.4
WP_032206243.1\|1451651_1452086_+	hypothetical protein	A0A0F7LBP4	Escherichia_phage	7.2e-54	87.5
WP_032206242.1\|1452073_1452499_+\|lysis	LysB family phage lysis regulatory protein	A0A0F7LDJ6	Escherichia_phage	3.0e-65	95.7
WP_001300730.1\|1452470_1452644_+	hypothetical protein	Q7Y4E1	Escherichia_virus	5.2e-24	94.7
WP_032206241.1\|1452606_1453074_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	3.0e-82	99.4
WP_032206240.1\|1453066_1453519_+	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	3.8e-74	97.3
WP_024245775.1\|1453590_1454376_-	hypothetical protein	NA	NA	NA	NA
WP_001093707.1\|1454459_1455095_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	4.1e-114	99.5
WP_032206239.1\|1455091_1455439_+\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	5.5e-57	98.3
WP_032206238.1\|1455443_1456352_+\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	7.5e-162	99.7
WP_032206237.1\|1456344_1456875_+\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	1.9e-101	98.9
WP_032206236.1\|1456885_1459204_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	3.7e-213	67.1
WP_032206234.1\|1459207_1459735_+\|tail	tail fiber assembly protein	U5N0T1	Enterobacteria_phage	5.2e-91	96.0
WP_000257039.1\|1460016_1461360_+	hypothetical protein	NA	NA	NA	NA
WP_032206231.1\|1461618_1462809_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.4e-224	99.5
WP_001251408.1\|1462821_1463340_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001031303.1\|1463396_1463672_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_000785970.1\|1463704_1463824_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_000468308.1\|1466191_1466410_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_001292815.1\|1466728_1469011_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.3e-162	41.4
1478508:1478524	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1532160 : 1597460

Enterobacteria_phage(36.96%)

terminase,integrase,portal,head,protease,capsid,holin,tail

attL 1547242:1547301|attR 1592723:1592787

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032206208.1\|1532160_1533921_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877161.1\|1534106_1534559_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000750416.1\|1534634_1535675_-	porin OmpA	NA	NA	NA	NA
WP_000288710.1\|1536031_1536541_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_000839153.1\|1536759_1537389_+	CRP-S regulon transcriptional coactivator Sxy	NA	NA	NA	NA
WP_074433556.1\|1537351_1539514_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261235.1\|1539523_1539970_-	YccF domain-containing protein	NA	NA	NA	NA
WP_032206206.1\|1540092_1542147_+	DNA helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
WP_000424181.1\|1542178_1542637_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847791.1\|1542732_1543395_-	DUF2057 family protein	NA	NA	NA	NA
WP_001343235.1\|1543567_1543981_+	CoA-binding protein	NA	NA	NA	NA
WP_001295356.1\|1544025_1544343_-	heat shock protein HspQ	NA	NA	NA	NA
WP_032206204.1\|1544400_1545591_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000048252.1\|1545685_1545964_+	acylphosphatase	NA	NA	NA	NA
WP_000904442.1\|1545960_1546290_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000375138.1\|1546380_1547040_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	5.2e-48	54.9
1547242:1547301	attL	NA	NA	NA	NA
WP_032206255.1\|1547447_1548257_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	1.1e-76	53.6
WP_000273151.1\|1548444_1548687_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_032206202.1\|1548754_1551229_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	58.2
WP_001098307.1\|1551322_1551514_-	DUF1482 family protein	NA	NA	NA	NA
WP_000413705.1\|1551510_1551699_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_000373334.1\|1552411_1552858_+	hypothetical protein	NA	NA	NA	NA
WP_000367377.1\|1552956_1553109_-	DUF1391 family protein	M4QQ57	Salicola_phage	1.9e-06	53.2
WP_021568727.1\|1553383_1553674_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000108762.1\|1553673_1553865_-	hypothetical protein	NA	NA	NA	NA
WP_021568728.1\|1553882_1554383_-	helix-turn-helix transcriptional regulator	A0A0U2QW76	Escherichia_phage	1.8e-16	54.5
WP_001048459.1\|1554490_1554754_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000693918.1\|1554750_1555176_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001262367.1\|1555247_1556318_+	hypothetical protein	A0A088CD36	Shigella_phage	3.8e-64	65.7
WP_032206198.1\|1556358_1556781_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	5.7e-64	91.9
WP_032206196.1\|1556838_1557198_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	8.0e-59	99.2
WP_032206194.1\|1557243_1557456_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	1.7e-32	88.6
WP_032206192.1\|1557491_1558325_+	hypothetical protein	Q1MVF7	Enterobacteria_phage	5.5e-26	65.7
WP_001278459.1\|1558434_1558539_+	hypothetical protein	NA	NA	NA	NA
WP_000128514.1\|1558726_1558939_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	9.6e-28	94.3
WP_001219082.1\|1559183_1559543_+	helix-turn-helix transcriptional regulator	L7TKV7	Pseudomonas_virus	7.1e-23	50.9
WP_000284536.1\|1559545_1560022_+	ImmA/IrrE family metallo-endopeptidase	L7THB5	Pseudomonas_virus	1.7e-16	33.3
WP_032207160.1\|1560454_1560733_+	hypothetical protein	I6PCV7	Cronobacter_phage	6.3e-11	45.3
WP_032207158.1\|1560734_1561793_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.1e-90	48.6
WP_032207155.1\|1561793_1562174_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.2e-34	62.7
WP_000762928.1\|1562170_1562992_+	antitermination protein	K7P7B9	Enterobacteria_phage	4.1e-82	61.2
WP_001344632.1\|1563588_1563720_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	5.2e-08	85.7
WP_053888468.1\|1564162_1566013_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	99.0
WP_000411804.1\|1566458_1566665_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	5.3e-31	98.5
WP_000138558.1\|1566920_1567193_-	hypothetical protein	NA	NA	NA	NA
WP_001003118.1\|1567352_1567886_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	3.1e-99	94.4
WP_000675931.1\|1568106_1568220_+	hypothetical protein	A0A2L1IV24	Escherichia_phage	6.6e-12	100.0
WP_012816791.1\|1568441_1568627_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_001303878.1\|1569154_1569469_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001300236.1\|1569550_1569775_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.9e-19	88.7
WP_000235436.1\|1570177_1570687_+\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_032207005.1\|1570658_1572587_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.1e-262	66.0
WP_000258991.1\|1572570_1572777_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	4.2e-12	60.0
WP_001430223.1\|1572773_1574366_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.1e-184	61.3
WP_001254039.1\|1574355_1575861_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.6e-100	54.0
WP_000256818.1\|1575897_1576245_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_000522630.1\|1576302_1577331_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.3e-114	61.3
WP_000201528.1\|1577382_1577757_+	hypothetical protein	NA	NA	NA	NA
WP_001204544.1\|1577749_1578103_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.5e-41	69.2
WP_032207006.1\|1578117_1578693_+\|tail	tail protein	A0A2R9YJK4	Escherichia_phage	6.4e-50	58.3
WP_032207007.1\|1578689_1579085_+	hypothetical protein	A0A2R9YJI2	Escherichia_phage	1.3e-65	91.6
WP_001342267.1\|1579092_1579833_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.0e-129	98.0
WP_000479169.1\|1579848_1580271_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.1e-70	96.4
WP_000459457.1\|1580252_1580687_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000847347.1\|1583237_1583567_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	3.6e-58	99.1
WP_032207009.1\|1583566_1584265_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.2e-132	98.7
WP_032207010.1\|1584270_1585014_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.0e-149	97.6
WP_071887464.1\|1584950_1585583_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	7.2e-95	98.6
WP_032207011.1\|1585643_1589039_+	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	88.8
WP_047617645.1\|1589106_1589706_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	6.3e-109	99.0
WP_060552821.1\|1589770_1590976_+\|tail	phage tail protein	B6DZB7	Enterobacteria_phage	1.9e-80	95.8
WP_001023379.1\|1590977_1591247_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	8.7e-42	95.5
WP_047618562.1\|1591372_1592125_-	molecular chaperone Tir	NA	NA	NA	NA
WP_001058323.1\|1593241_1594360_+	hydrogenase 1 small subunit	NA	NA	NA	NA
1592723:1592787	attR	NA	NA	NA	NA
WP_000107384.1\|1594356_1596150_+	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_001186424.1\|1596168_1596876_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000003671.1\|1596872_1597460_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA

DBSCAN-SWA_7

1755932 : 1836781

Enterobacteria_phage(39.44%)

tRNA,terminase,portal,integrase,transposase,protease,holin,tail

attL 1783907:1783923|attR 1837701:1837717

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001113310.1\|1755932_1756400_+	DUF2335 domain-containing protein	A0A1B0YZW3	Pseudomonas_phage	4.4e-09	35.0
WP_000948454.1\|1757375_1757852_-	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	5.7e-12	53.4
WP_000711018.1\|1757976_1758300_+	transcriptional regulator	A0A0R6PH31	Moraxella_phage	6.2e-10	44.9
WP_000693928.1\|1758283_1758709_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_032206333.1\|1758780_1759851_+	phage replisome organizer	A0A088CD36	Shigella_phage	1.3e-64	65.7
WP_032206334.1\|1759857_1760604_+	ATP-binding protein	A0A088CBP4	Shigella_phage	1.1e-113	83.2
WP_032206335.1\|1760625_1761351_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.0e-77	63.2
WP_001118161.1\|1761366_1761762_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.0e-30	51.4
WP_001278450.1\|1762519_1762624_+	hypothetical protein	NA	NA	NA	NA
WP_000887477.1\|1762812_1763025_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	3.1e-18	68.6
WP_032206337.1\|1763144_1763489_+	YgiW/YdeI family stress tolerance OB fold protein	A0A1I9LJU6	Stx_converting_phage	1.4e-55	98.2
WP_032206341.1\|1763610_1763883_+	hypothetical protein	S4TNP0	Salmonella_phage	5.5e-12	51.5
WP_032207210.1\|1764945_1765320_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	64.5
WP_047619233.1\|1765316_1766138_+	antitermination protein	K7P7B9	Enterobacteria_phage	5.1e-77	57.5
WP_000143458.1\|1769103_1769283_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_060552830.1\|1769323_1769614_+	DUF826 domain-containing protein	A0A0P0ZC09	Stx2-converting_phage	2.9e-19	88.5
WP_000284518.1\|1769690_1769906_+\|holin	holin	Q6H9V8	Enterobacteria_phage	2.0e-33	100.0
WP_074433498.1\|1769910_1770900_+	YdfR family protein	Q08JA0	Stx2-converting_phage	7.5e-107	64.1
WP_032207060.1\|1770936_1771473_+	lysozyme	G9L6J6	Escherichia_phage	4.5e-98	94.9
WP_012816791.1\|1771990_1772176_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_032207063.1\|1772261_1772486_+	hypothetical protein	NA	NA	NA	NA
WP_000373407.1\|1772905_1773382_+	DUF1441 family protein	Q8VNN8	Enterobacteria_phage	3.3e-84	100.0
WP_001077625.1\|1773378_1775502_+\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	0.0e+00	100.0
WP_000102414.1\|1775498_1775711_+	hypothetical protein	S5MBY8	Escherichia_phage	1.1e-28	97.1
WP_060552831.1\|1775710_1777213_+\|portal	phage portal protein	Q8VNN6	Enterobacteria_phage	6.5e-288	99.4
WP_129014764.1\|1777202_1779182_+\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	98.9
WP_001097065.1\|1779269_1779596_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
WP_001281350.1\|1779588_1779870_+	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	3.9e-45	97.8
WP_000974966.1\|1779872_1780496_+	hypothetical protein	Q9EYD6	Enterobacteria_phage	6.6e-101	100.0
WP_000682718.1\|1780508_1780907_+	hypothetical protein	Q9EYD7	Enterobacteria_phage	1.7e-70	99.2
WP_032208644.1\|1780914_1781664_+\|tail	phage tail protein	S5M7Q5	Escherichia_phage	4.8e-130	94.4
WP_000479056.1\|1781679_1782102_+\|tail	phage minor tail protein G	S5MQJ3	Escherichia_phage	4.3e-72	98.6
WP_000532075.1\|1782128_1782437_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	3.0e-54	99.0
WP_060552832.1\|1782480_1785126_+\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	95.2
1783907:1783923	attL	NA	NA	NA	NA
WP_000847304.1\|1785122_1785452_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	2.2e-55	95.4
WP_060552833.1\|1785451_1786150_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	8.9e-131	97.8
WP_096913390.1\|1786635_1786770_-	AMP nucleosidase	A0A0N7BTS3	Escherichia_phage	1.3e-06	84.4
WP_106888148.1\|1786735_1787949_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
WP_123007084.1\|1788162_1788795_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	1.0e-104	93.3
WP_060552835.1\|1789040_1792520_+	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	95.0
WP_060552836.1\|1792586_1793186_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	2.9e-106	95.5
WP_071887548.1\|1793250_1794366_+\|tail	phage tail protein	B6DZB7	Enterobacteria_phage	1.8e-80	93.6
WP_001023446.1\|1794367_1794637_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	1.2e-43	97.8
WP_047088273.1\|1795091_1796453_-	type III secretion system effector EspK	Q9MBM1	Phage_Gifsy-1	1.5e-49	40.2
WP_106888148.1\|1796548_1797762_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
WP_000799400.1\|1798129_1798993_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_032206984.1\|1798976_1800113_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	9.4e-29	39.8
WP_000359446.1\|1800362_1801589_+	peptidase T	NA	NA	NA	NA
WP_060552838.1\|1801637_1802759_-	[50S ribosomal protein L16]-arginine 3-hydroxylase	NA	NA	NA	NA
WP_032206982.1\|1802834_1804295_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|1804294_1804966_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423729.1\|1805134_1806505_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
WP_001297479.1\|1806508_1807150_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_032206981.1\|1807185_1808292_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476093.1\|1808345_1808807_-	phosphatase NudJ	NA	NA	NA	NA
WP_032206979.1\|1808816_1809470_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_032206978.1\|1809641_1810892_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-22	98.1
WP_000741335.1\|1810993_1812136_-\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	3.6e-206	100.0
WP_000088653.1\|1812125_1812362_-	excisionase	NA	NA	NA	NA
WP_106918786.1\|1812559_1813790_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-172	98.0
WP_032207484.1\|1813878_1814079_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.2e-33	98.5
WP_000763385.1\|1814126_1814345_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
WP_001386642.1\|1814443_1814725_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
WP_032207486.1\|1814735_1815293_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	7.8e-61	61.7
WP_000682319.1\|1815285_1815447_-	DUF1317 family protein	A0A0P0ZAS9	Stx2-converting_phage	9.1e-23	100.0
WP_032207488.1\|1815443_1816124_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	7.9e-132	99.1
WP_001438244.1\|1816120_1816906_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	1.4e-148	99.6
WP_000995409.1\|1816911_1817208_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	6.2e-49	99.0
WP_000372937.1\|1817283_1817427_-	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	1.2e-18	100.0
WP_001198861.1\|1817395_1817560_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
WP_047088220.1\|1817632_1818001_-	DUF2528 family protein	M1FPD2	Enterobacteria_phage	2.2e-64	98.4
WP_032207130.1\|1818196_1818646_-	hypothetical protein	I6RSN8	Salmonella_phage	1.3e-69	88.6
WP_032207131.1\|1818704_1818977_-	hypothetical protein	A0A0N7C217	Escherichia_phage	9.7e-41	98.9
WP_001278657.1\|1819418_1820039_-	hypothetical protein	A4KWT4	Enterobacteria_phage	6.2e-51	99.5
WP_001207141.1\|1820035_1820470_-	hypothetical protein	A4KWT5	Enterobacteria_phage	6.0e-77	99.3
WP_096913377.1\|1820520_1821216_-	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	4.3e-133	99.6
WP_000067727.1\|1821290_1821506_+	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_106918787.1\|1821629_1822842_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	3.5e-167	98.6
WP_071887470.1\|1822923_1823343_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.7e-68	92.0
WP_032206875.1\|1823462_1824353_-	manganese catalase family protein	NA	NA	NA	NA
WP_032206874.1\|1824371_1824878_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001546534.1\|1824914_1825415_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000134810.1\|1825493_1825676_-	general stress protein	NA	NA	NA	NA
WP_129014756.1\|1826173_1826842_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937500.1\|1826898_1827204_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
WP_060552842.1\|1827387_1828872_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_032207030.1\|1829058_1830012_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_000361110.1\|1830510_1831095_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_074433656.1\|1832036_1832189_+	isocitrate dehydrogenase	Q77Z09	Phage_21	2.4e-20	98.0
WP_001307134.1\|1832291_1832615_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	8.0e-42	65.4
WP_032141808.1\|1833147_1833258_-	hypothetical protein	NA	NA	NA	NA
WP_106888170.1\|1835567_1836781_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.6e-167	98.6
1837701:1837717	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1867966 : 1979486

114

Escherichia_phage(23.91%)

tRNA,integrase,portal,head,transposase,protease,holin,tail

attL 1920504:1920563|attR 1959776:1961086

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032208512.1\|1867966_1868551_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000823885.1\|1868828_1869107_+	stress-induced protein YchH	NA	NA	NA	NA
WP_001033352.1\|1869161_1870841_-	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	1.3e-23	23.6
WP_001298109.1\|1870965_1871913_-	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	3.9e-44	37.8
WP_001260333.1\|1872063_1872915_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_001130692.1\|1872914_1873538_-	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_000173200.1\|1873751_1875008_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_024226915.1\|1875049_1876132_+	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	1.5e-07	41.6
WP_000456461.1\|1876131_1876965_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_000200378.1\|1876961_1877354_+	SirB family protein	NA	NA	NA	NA
WP_001257044.1\|1877357_1878167_+	tetratricopeptide repeat-containing protein	NA	NA	NA	NA
WP_000811065.1\|1878202_1879057_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	8.3e-46	39.0
WP_000170926.1\|1879205_1879313_-	hypothetical protein	NA	NA	NA	NA
WP_000170965.1\|1879741_1879849_-	hypothetical protein	NA	NA	NA	NA
WP_001295620.1\|1880253_1881354_-	sodium-potassium/proton antiporter ChaA	NA	NA	NA	NA
WP_001146440.1\|1881623_1881854_+	putative cation transport regulator ChaB	NA	NA	NA	NA
WP_001336325.1\|1882011_1882707_+	glutathione-specific gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_001169669.1\|1882750_1883104_-	DsrE/F sulfur relay family protein YchN	NA	NA	NA	NA
WP_000086217.1\|1883288_1884683_+	inverse autotransporter invasin YchO	NA	NA	NA	NA
WP_000070491.1\|1884683_1885334_-	two-component system response regulator NarL	NA	NA	NA	NA
WP_000918073.1\|1885326_1887123_-	nitrate/nitrite two-component system sensor histidine kinase NarX	NA	NA	NA	NA
WP_000019827.1\|1887461_1888853_+	nitrate transporter NarK	NA	NA	NA	NA
WP_060552846.1\|1889368_1893112_+	nitrate reductase subunit alpha	NA	NA	NA	NA
WP_000702660.1\|1893108_1894647_+	nitrate reductase subunit beta	A0A077SL61	Escherichia_phage	6.3e-20	40.8
WP_000571699.1\|1894643_1895354_+	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA
WP_001160110.1\|1895353_1896031_+	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA
WP_000555849.1\|1896637_1897480_-	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	1.1e-13	47.6
WP_001307143.1\|1897529_1897988_-	YchJ family protein	NA	NA	NA	NA
WP_001295622.1\|1898100_1899006_+	patatin-like phospholipase RssA	NA	NA	NA	NA
WP_000193447.1\|1899097_1900111_+	two-component system response regulator RssB	NA	NA	NA	NA
WP_000718995.1\|1900312_1901221_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.4e-59	46.8
WP_001287378.1\|1901364_1901778_-	DNA-binding transcriptional regulator H-NS	NA	NA	NA	NA
WP_000068079.1\|1902382_1903000_+	thymidine kinase	A0A0A0YP64	Citrobacter_phage	1.3e-53	53.6
WP_000301651.1\|1903301_1905977_-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_000616554.1\|1906453_1907101_+	NAAT family transporter YchE	NA	NA	NA	NA
WP_001211521.1\|1907258_1907555_-	hypothetical protein	NA	NA	NA	NA
WP_032208522.1\|1907838_1909470_+	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA
WP_000911112.1\|1909555_1910476_+	oligopeptide ABC transporter permease OppB	NA	NA	NA	NA
WP_000979648.1\|1910490_1911399_+	oligopeptide ABC transporter permease OppC	NA	NA	NA	NA
WP_032208507.1\|1911410_1912424_+	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppD	G9BWD6	Planktothrix_phage	9.0e-15	31.7
WP_000994905.1\|1912420_1913425_+	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF	G9BWD6	Planktothrix_phage	8.0e-24	35.6
WP_000366959.1\|1913477_1913807_-	YciU family protein	NA	NA	NA	NA
WP_032208505.1\|1913841_1915302_-	cardiolipin synthase	NA	NA	NA	NA
WP_001309467.1\|1915444_1915618_+	YciY family protein	NA	NA	NA	NA
WP_001299682.1\|1915672_1916926_-	voltage-gated potassium channel protein	NA	NA	NA	NA
WP_000967595.1\|1917225_1917522_-	YciI family protein	NA	NA	NA	NA
WP_050439363.1\|1918092_1918446_+	hypothetical protein	NA	NA	NA	NA
WP_000447713.1\|1919114_1919666_+	recombinase family protein	G8I4U3	Mycobacterium_phage	4.7e-26	39.0
1920504:1920563	attL	NA	NA	NA	NA
WP_106888077.1\|1920557_1921770_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3
WP_032206800.1\|1922225_1922945_+	TonB system transport protein TonB	NA	NA	NA	NA
WP_032206794.1\|1922984_1923383_-	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA
WP_032206795.1\|1923487_1924027_-	septation protein A	NA	NA	NA	NA
WP_000028540.1\|1924056_1924800_-	UPF0259 family protein	NA	NA	NA	NA
WP_000737224.1\|1925156_1925795_+	outer membrane protein OmpW	NA	NA	NA	NA
WP_000336626.1\|1926191_1927010_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.0e-66	45.2
WP_000088311.1\|1927045_1927348_-\|transposase	transposase	NA	NA	NA	NA
WP_060552847.1\|1927421_1927943_+\|portal	portal protein	A0A0P0ZCZ4	Stx2-converting_phage	1.5e-74	96.4
WP_000125990.1\|1927939_1928266_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001007905.1\|1928275_1928626_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000878219.1\|1928904_1929771_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
WP_072097498.1\|1929767_1929998_-\|transposase	transposase	NA	NA	NA	NA
WP_047619061.1\|1931168_1931438_+\|tail	phage tail protein	B6DZB8	Enterobacteria_phage	6.4e-45	98.9
WP_000767050.1\|1931658_1932201_+	hypothetical protein	Q9LA55	Enterobacteria_phage	8.4e-52	68.6
WP_106409363.1\|1932145_1932340_+	hypothetical protein	A0A2R2Z347	Escherichia_phage	1.1e-09	87.2
WP_032207133.1\|1932682_1934005_-	type III secretion system effector NleA	H6WZN2	Escherichia_phage	4.6e-221	83.9
WP_000878219.1\|1934756_1935623_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
WP_000169527.1\|1935619_1935919_-\|transposase	transposase	NA	NA	NA	NA
WP_000935464.1\|1936106_1936745_+	hypothetical protein	A5LH48	Enterobacteria_phage	5.4e-82	76.9
WP_000938103.1\|1936810_1937380_+	T3SS effector caspase inhibitor NleF	NA	NA	NA	NA
WP_001303943.1\|1938547_1938826_-	hypothetical protein	NA	NA	NA	NA
WP_001414184.1\|1940563_1940710_+	hypothetical protein	NA	NA	NA	NA
WP_032207081.1\|1940846_1941494_-	T3SS effector E3 ubiquitin-protein ligase NleG	B6ETE1	Enterobacteria_phage	1.6e-41	41.1
WP_032207080.1\|1941677_1942268_+	T3SS effector guanine nucleotide exchange factor EspM1	NA	NA	NA	NA
WP_101967138.1\|1945121_1945556_-\|integrase	tyrosine-type recombinase/integrase	Q77Z04	Phage_21	6.3e-42	56.8
WP_000088311.1\|1945636_1945939_+\|transposase	transposase	NA	NA	NA	NA
WP_000336626.1\|1945974_1946793_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.0e-66	45.2
WP_000199475.1\|1947991_1948180_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449175.1\|1948176_1948365_-	cell division inhibitor	NA	NA	NA	NA
WP_001331716.1\|1948765_1948930_+	hypothetical protein	NA	NA	NA	NA
WP_032208669.1\|1948933_1949152_-	hypothetical protein	NA	NA	NA	NA
WP_024182289.1\|1949243_1949444_+	hypothetical protein	NA	NA	NA	NA
WP_064765773.1\|1949855_1950500_-	LexA family transcriptional regulator	A0A1P8DTH0	Proteus_phage	8.0e-09	25.9
WP_001261756.1\|1950599_1950827_+	cell division protein	NA	NA	NA	NA
WP_000917749.1\|1951492_1951690_+	hypothetical protein	Q9MC00	Enterobacteria_phage	3.6e-29	98.5
WP_032208672.1\|1951840_1952917_+	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	3.8e-181	87.3
WP_001443281.1\|1953510_1953837_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.1e-36	62.9
WP_000143458.1\|1956211_1956391_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290230.1\|1956431_1956677_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_001072901.1\|1956754_1956970_+\|holin	holin	A0A2R2Z340	Escherichia_phage	1.2e-33	100.0
WP_047618934.1\|1956974_1957508_+	lysozyme	A0A2R2Z343	Escherichia_phage	1.5e-101	98.9
WP_001056885.1\|1957782_1958352_+	hypothetical protein	A0A2R2Z339	Escherichia_phage	1.8e-105	100.0
WP_000455406.1\|1958351_1958501_+	hypothetical protein	A0A0P0ZFU6	Escherichia_phage	2.4e-17	100.0
WP_106888077.1\|1958567_1959781_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3
WP_129014757.1\|1960041_1960227_+	hypothetical protein	A0A1U9AJA4	Stx1_converting_phage	4.9e-20	78.7
WP_001302717.1\|1960752_1961067_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_032208325.1\|1961148_1961373_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	5.0e-19	88.7
1959776:1961086	attR	NA	NA	NA	NA
WP_000336626.1\|1961466_1962285_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.0e-66	45.2
WP_106918788.1\|1962661_1962769_+	hypothetical protein	A0A2R2Z352	Escherichia_phage	3.2e-08	100.0
WP_001023986.1\|1962827_1963097_+\|tail	phage tail protein	A0A1I9LJT0	Stx_converting_phage	4.2e-44	96.6
WP_000692020.1\|1964230_1964821_+	protein kinase	NA	NA	NA	NA
WP_001079499.1\|1965858_1966365_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|1966996_1967176_-	general stress protein	NA	NA	NA	NA
WP_000443055.1\|1967556_1968363_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209521.1\|1968362_1969556_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_032206824.1\|1969567_1970926_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	5.0e-37	41.2
WP_000763511.1\|1970929_1972525_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_032206802.1\|1972524_1974087_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|1974178_1974223_-	trp operon leader peptide	NA	NA	NA	NA
WP_032206803.1\|1974360_1975242_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|1975238_1975859_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001291216.1\|1975959_1976832_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278904.1\|1976871_1977462_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_032206806.1\|1977458_1978217_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	5.2e-07	23.9
WP_032206807.1\|1978436_1979486_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	6.0e-22	32.0

DBSCAN-SWA_9

2000931 : 2134395

157

Escherichia_phage(51.72%)

integrase,terminase,portal,head,transposase,lysis,capsid,holin,tail

attL 2012221:2012244|attR 2062182:2062205

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000573407.1\|2000931_2001738_-	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	7.2e-15	28.6
WP_001128858.1\|2001739_2002732_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA
WP_001146163.1\|2002731_2003622_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_047087715.1\|2003756_2004986_+\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	4.8e-119	51.4
WP_001563185.1\|2004949_2005192_-	hypothetical protein	NA	NA	NA	NA
WP_021351637.1\|2005473_2005707_-	hypothetical protein	G3CFG9	Escherichia_phage	2.3e-35	100.0
WP_000994793.1\|2005850_2006231_-	DUF1627 domain-containing protein	A0A0P0ZFT6	Escherichia_phage	1.2e-52	100.0
WP_001291843.1\|2006266_2006479_-	DUF1382 family protein	A0A0P0ZGA1	Escherichia_phage	7.1e-31	100.0
WP_032206818.1\|2006438_2007065_-	adenine methylase	A0A2R2Z304	Escherichia_phage	4.0e-122	99.5
WP_000809302.1\|2007061_2007493_-	hypothetical protein	A0A2R2Z303	Escherichia_phage	7.3e-75	100.0
WP_000211992.1\|2007548_2008226_-	ORF6N domain-containing protein	A0A2R2Z302	Escherichia_phage	1.3e-123	100.0
WP_001260979.1\|2008550_2008808_+	type II toxin-antitoxin system ParD family antitoxin	A0A0N7C055	Escherichia_phage	4.2e-38	100.0
WP_001451755.1\|2008936_2009134_+	hypothetical protein	A0A0N7BYR2	Escherichia_phage	4.1e-33	100.0
WP_001302866.1\|2009223_2009529_+	HigA family addiction module antidote protein	A0A0N7BS23	Escherichia_phage	4.4e-50	100.0
WP_000206752.1\|2010398_2011022_-	DUF551 domain-containing protein	A0A1I9LJM0	Stx_converting_phage	3.1e-119	100.0
WP_000212746.1\|2011025_2011313_-	hypothetical protein	A0A1I9LJM1	Stx_converting_phage	9.2e-50	100.0
WP_001142590.1\|2011314_2011533_-	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	3.5e-33	100.0
WP_032206820.1\|2011534_2011750_-	hypothetical protein	A0A0N7C076	Escherichia_phage	8.7e-37	97.2
WP_001301469.1\|2011709_2012216_-	hypothetical protein	A0A0N7C063	Escherichia_phage	4.2e-90	100.0
WP_001303141.1\|2012217_2013165_-	ead/Ea22-like family protein	A0A0N7BYR8	Escherichia_phage	1.6e-183	100.0
2012221:2012244	attL	NA	NA	NA	NA
WP_000157000.1\|2013388_2013592_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	4.7e-32	100.0
WP_000995345.1\|2015768_2016050_-	host nuclease inhibitor GamL	A0A0P0ZFG3	Escherichia_phage	1.1e-47	100.0
WP_000934197.1\|2016070_2016352_-	hypothetical protein	A0A0P0ZGC3	Escherichia_phage	3.0e-45	100.0
WP_000917252.1\|2016363_2016576_-	cell division inhibitor protein	A0A0P0ZGD1	Escherichia_phage	5.8e-33	100.0
WP_071887479.1\|2016646_2017543_-	hypothetical protein	A0A0P0ZG86	Escherichia_phage	5.2e-99	72.0
WP_032207145.1\|2018045_2018999_-	restriction endonuclease BsuBI	A0A0P0ZG22	Escherichia_phage	3.5e-186	99.7
WP_032207143.1\|2018995_2020465_-	SAM-dependent methyltransferase	A0A2L1IV91	Escherichia_phage	2.7e-286	100.0
WP_001056250.1\|2020559_2021273_-	LexA family transcriptional regulator	A0A2R2X2B0	Escherichia_phage	6.3e-132	100.0
WP_001240876.1\|2021368_2021572_+	Cro/CI family transcriptional regulator	A0A2R2Z333	Escherichia_phage	2.0e-30	100.0
WP_077744819.1\|2021742_2021937_+	hypothetical protein	NA	NA	NA	NA
WP_032207142.1\|2022103_2022481_+	hypothetical protein	A0A2R2Z329	Escherichia_phage	1.2e-60	99.2
WP_000913117.1\|2022474_2023995_+	DEAD/DEAH box helicase	A0A0N7KZV6	Escherichia_phage	4.0e-301	98.2
WP_060552848.1\|2023984_2024926_+	DNA primase	A0A0H4IPK0	Shigella_phage	1.8e-179	96.7
WP_000402090.1\|2024954_2025404_+	DUF1367 family protein	A0A2R2Z328	Escherichia_phage	1.0e-79	98.0
WP_001187434.1\|2025411_2025975_+	bacteriophage lambda NinG family protein	A0A2R2Z332	Escherichia_phage	4.7e-106	100.0
WP_000144764.1\|2025971_2026166_+	protein ninH	G9L694	Escherichia_phage	1.9e-30	100.0
WP_001204844.1\|2026158_2026593_+	antitermination protein	A0A2R2Z331	Escherichia_phage	5.6e-83	100.0
WP_001356551.1\|2026841_2026994_+	DNA methylase	A0A2R2Z327	Escherichia_phage	4.0e-20	100.0
WP_000649753.1\|2027376_2028336_+	Shiga toxin Stx2c subunit A	Q776Q3	Enterobacteria_phage	5.6e-176	100.0
WP_000738068.1\|2028347_2028617_+	Shiga toxin Stx2a subunit B	A0A2R2Z326	Escherichia_phage	1.2e-43	100.0
WP_000143458.1\|2031176_2031356_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290230.1\|2031396_2031642_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_001072901.1\|2031719_2031935_+\|holin	holin	A0A2R2Z340	Escherichia_phage	1.2e-33	100.0
WP_047618934.1\|2031939_2032473_+	lysozyme	A0A2R2Z343	Escherichia_phage	1.5e-101	98.9
WP_001056885.1\|2032747_2033317_+	hypothetical protein	A0A2R2Z339	Escherichia_phage	1.8e-105	100.0
WP_000455406.1\|2033316_2033466_+	hypothetical protein	A0A0P0ZFU6	Escherichia_phage	2.4e-17	100.0
WP_001082654.1\|2033473_2033938_+\|lysis	lysis protein	A0A2R2Z341	Escherichia_phage	5.8e-78	100.0
WP_000738505.1\|2033969_2034263_-	serum resistance lipoprotein Bor	A0A2R2X2B2	Escherichia_phage	6.8e-48	100.0
WP_001301714.1\|2034412_2034616_+	hypothetical protein	A0A2R2Z338	Escherichia_phage	7.7e-35	100.0
WP_106888077.1\|2034890_2036104_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3
WP_000479105.1\|2036917_2037349_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.7e-42	68.8
WP_044861160.1\|2037375_2037780_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	2.6e-42	82.2
WP_032206995.1\|2040335_2040665_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	1.2e-56	97.2
WP_060552849.1\|2040664_2041363_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	3.1e-131	97.8
WP_060552850.1\|2041368_2042112_+\|tail	phage tail protein	A0A0P0ZDJ9	Stx2-converting_phage	2.1e-146	99.2
WP_123007084.1\|2042057_2042690_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	1.0e-104	93.3
WP_060552852.1\|2042935_2046412_+	host specificity protein J	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	95.9
WP_001230532.1\|2046478_2047078_+	Ail/Lom family outer membrane beta-barrel protein	B6ETG5	Enterobacteria_phage	4.4e-110	99.0
WP_129014758.1\|2047142_2048726_+\|tail	phage tail protein	Q9EYE8	Enterobacteria_phage	4.2e-59	100.0
WP_001131658.1\|2048840_2049416_+	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	4.1e-89	88.9
WP_078164217.1\|2049488_2050118_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.9e-76	90.2
WP_001143804.1\|2050199_2050841_+	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	3.8e-104	96.7
WP_001206148.1\|2051013_2052309_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	2.5e-155	62.3
WP_001368608.1\|2052328_2052565_-	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_060552853.1\|2052652_2055115_-	exonuclease	V5UQJ3	Shigella_phage	8.9e-125	47.4
WP_000199475.1\|2055207_2055396_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449175.1\|2055392_2055581_-	cell division inhibitor	NA	NA	NA	NA
WP_001133037.1\|2056144_2056354_+	hypothetical protein	NA	NA	NA	NA
WP_001473525.1\|2056354_2056993_-	hypothetical protein	A0A2R2Z306	Escherichia_phage	2.5e-07	41.9
WP_000379546.1\|2057004_2057157_-	DUF1391 family protein	M4QQ57	Salicola_phage	1.3e-07	53.2
WP_001444087.1\|2057428_2057716_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001090455.1\|2057719_2057908_-	hypothetical protein	NA	NA	NA	NA
WP_001444086.1\|2057937_2058345_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000548554.1\|2058452_2058731_+	helix-turn-helix domain-containing protein	A0A1B5FPK9	Escherichia_phage	9.7e-12	41.0
WP_000705386.1\|2058714_2059236_+	hypothetical protein	NA	NA	NA	NA
WP_000054521.1\|2059216_2060194_+	hypothetical protein	U5P0A0	Shigella_phage	3.8e-55	61.2
WP_000790460.1\|2060200_2060941_+	ATP-binding protein	A0A088CBP4	Shigella_phage	4.7e-114	83.1
WP_009453174.1\|2060970_2061741_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.4e-81	66.0
WP_001473635.1\|2061756_2062152_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.3e-30	52.1
WP_162491415.1\|2062152_2062566_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.0e-57	97.5
2062182:2062205	attR	NA	NA	NA	NA
WP_000935420.1\|2062616_2062829_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	5.8e-33	94.3
WP_044862496.1\|2063058_2063247_+	hypothetical protein	A0A1I9LJM4	Stx_converting_phage	7.7e-29	93.5
WP_000951710.1\|2063248_2063458_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.8e-34	94.2
WP_001473452.1\|2063454_2064090_+	DUF551 domain-containing protein	G9L6G3	Escherichia_phage	3.5e-81	91.4
WP_001278454.1\|2064205_2064310_+	hypothetical protein	NA	NA	NA	NA
WP_000128514.1\|2064499_2064712_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	9.6e-28	94.3
WP_000737636.1\|2064855_2065248_+	hypothetical protein	NA	NA	NA	NA
WP_001473246.1\|2065544_2065823_+	hypothetical protein	I6PCV7	Cronobacter_phage	2.2e-11	46.9
WP_001375683.1\|2065824_2066874_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.6e-115	57.6
WP_001047111.1\|2066887_2067640_+	antitermination protein	K7PGU5	Enterobacteria_phage	2.6e-136	98.8
WP_000735807.1\|2068484_2068709_+	hypothetical protein	NA	NA	NA	NA
WP_000498121.1\|2068761_2068971_+	hypothetical protein	K7PJU3	Enterobacteria_phage	2.5e-20	65.2
WP_001299632.1\|2069160_2069592_+	tellurite resistance protein	H6WZJ6	Escherichia_phage	7.8e-69	98.6
WP_060552855.1\|2070070_2071924_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.5
WP_000284516.1\|2072073_2072289_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	7.7e-33	97.2
WP_024231374.1\|2072292_2072850_+	hypothetical protein	Q08JA0	Stx2-converting_phage	7.8e-53	84.6
WP_001092861.1\|2072892_2073426_+	lysozyme	Q6H9V6	Enterobacteria_phage	5.3e-99	94.9
WP_001082561.1\|2073724_2074192_+\|lysis	lysis protein	Q9ZXB6	Enterobacteria_phage	2.8e-56	77.4
WP_000347013.1\|2074542_2074683_+	hypothetical protein	NA	NA	NA	NA
WP_001329960.1\|2074815_2075001_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	3.2e-19	90.4
WP_000453587.1\|2075389_2075935_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001027330.1\|2075909_2077835_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
WP_000198153.1\|2077831_2078038_+\|head,tail	head-tail joining protein	A0A2R9YJL2	Escherichia_phage	2.2e-29	98.5
WP_024026143.1\|2078034_2079636_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.1e-308	98.9
WP_000123254.1\|2079616_2080936_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.4e-232	98.2
WP_001365129.1\|2080945_2081278_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.5e-54	98.2
WP_000063258.1\|2081333_2082359_+\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	5.1e-191	98.8
WP_022581670.1\|2082400_2082796_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.3e-56	93.2
WP_000752994.1\|2082807_2083161_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_000975098.1\|2083172_2083751_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.0e-79	98.4
WP_000683137.1\|2083747_2084143_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	3.7e-65	92.4
WP_000235067.1\|2084150_2084903_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	1.2e-133	98.4
WP_000479045.1\|2084916_2085339_+\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	1.7e-71	98.6
WP_000533440.1\|2085365_2085779_+\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.2e-43	83.2
WP_060552857.1\|2085759_2088372_+\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	90.5
WP_000847298.1\|2088368_2088698_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_060552858.1\|2088697_2089396_+\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	3.1e-131	97.4
WP_000194723.1\|2089406_2090150_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	5.0e-148	98.0
WP_129014765.1\|2090095_2090728_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.7e-96	91.0
WP_060552860.1\|2090974_2094451_+	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	96.5
WP_032325332.1\|2094517_2095117_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	8.8e-111	99.0
WP_000279047.1\|2095181_2096495_+\|tail	tail fiber protein	H6WZM9	Escherichia_phage	2.4e-76	97.7
WP_001101700.1\|2096496_2096766_+\|tail	phage tail protein	H6WZN0	Escherichia_phage	1.9e-44	97.8
WP_122988840.1\|2096876_2096954_+	hypothetical protein	NA	NA	NA	NA
WP_122993102.1\|2097168_2098182_+	peptidase M85	NA	NA	NA	NA
WP_096846665.1\|2098552_2098867_-	DinI-like family protein	Q687E4	Enterobacteria_phage	2.4e-27	83.3
WP_000347482.1\|2098926_2100210_+	MHS family MFS transporter	NA	NA	NA	NA
WP_000527756.1\|2100298_2101759_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	8.6e-43	30.1
WP_000214712.1\|2101794_2101998_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
WP_032208665.1\|2102175_2102862_-	DNA-binding transcriptional regulator YdfH	NA	NA	NA	NA
WP_000636571.1\|2102950_2103697_-	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_032208663.1\|2103833_2105879_+	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
WP_032208661.1\|2105922_2106468_-	2-oxo-tetronate isomerase	NA	NA	NA	NA
WP_060552861.1\|2106478_2107297_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.5e-65	44.9
WP_000088311.1\|2107332_2107635_-\|transposase	transposase	NA	NA	NA	NA
WP_000671731.1\|2107982_2108375_+	YdeI family stress tolerance OB fold protein	NA	NA	NA	NA
WP_000592822.1\|2108629_2109520_+	diguanylate cyclase DgcZ	A0A127AWB9	Bacillus_phage	1.8e-19	37.7
WP_000901367.1\|2109738_2109834_-	protein MgtS	NA	NA	NA	NA
WP_071887482.1\|2109960_2110149_-	hypothetical protein	NA	NA	NA	NA
WP_000087214.1\|2110343_2111243_+	O-acetylserine/cysteine exporter	NA	NA	NA	NA
WP_000803659.1\|2111273_2111492_-	multiple antibiotic resistance protein MarB	NA	NA	NA	NA
WP_000091199.1\|2111523_2111907_-	MDR efflux pump AcrAB transcriptional activator MarA	D0R0F8	Streptococcus_phage	4.7e-09	32.3
WP_000843419.1\|2111926_2112361_-	multiple antibiotic resistance transcriptional regulator MarR	NA	NA	NA	NA
WP_000885033.1\|2112572_2113238_+	NAAT family transporter MarC	NA	NA	NA	NA
WP_032206991.1\|2113262_2114453_-	L-arabinose MFS transporter	NA	NA	NA	NA
WP_032206990.1\|2114602_2115718_-	putative protein YneK	NA	NA	NA	NA
WP_032206989.1\|2115794_2116676_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001364729.1\|2116776_2118165_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_077744806.1\|2118228_2120277_+	glutaminase B	NA	NA	NA	NA
WP_000637082.1\|2120483_2121398_+	hypothetical protein	NA	NA	NA	NA
WP_001286590.1\|2121401_2122160_-	trans-aconitate 2-methyltransferase	NA	NA	NA	NA
WP_000774169.1\|2122531_2123407_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_032206988.1\|2123433_2124456_-	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_000911184.1\|2125459_2126488_-	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_001194905.1\|2126481_2128017_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	9.8e-21	30.4
WP_000154339.1\|2128264_2129218_+	transcriptional regulator LsrR	NA	NA	NA	NA
WP_085972493.1\|2133122_2134395_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7

DBSCAN-SWA_10

2236860 : 2344217

104

Escherichia_phage(38.1%)

tRNA,terminase,portal,integrase,transposase,protease,holin,tail

attL 2293495:2293520|attR 2338849:2338874

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000826403.1\|2236860_2238069_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	1.5e-205	92.5
WP_000586732.1\|2239571_2240165_-	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
WP_032206931.1\|2241279_2242236_+	acetyltransferase	NA	NA	NA	NA
WP_001296778.1\|2242853_2243078_-	YdcH family protein	NA	NA	NA	NA
WP_047087872.1\|2243217_2244873_-	glucan biosynthesis protein OpgD	NA	NA	NA	NA
WP_000169527.1\|2246017_2246317_-\|transposase	transposase	NA	NA	NA	NA
WP_000414564.1\|2246981_2247905_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_032206697.1\|2247942_2249583_-	methyl-accepting chemotaxis protein Trg	NA	NA	NA	NA
WP_001320773.1\|2249981_2250131_+	type I toxin-antitoxin system toxin HokB	NA	NA	NA	NA
WP_000731833.1\|2250202_2250376_-	periplasmic protein	A0A0R6PKG1	Moraxella_phage	4.4e-07	67.4
WP_000428998.1\|2250620_2251151_-	cytochrome b561	A0A0U2QLA7	Escherichia_phage	3.1e-19	44.9
WP_000048667.1\|2251339_2252341_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_032206698.1\|2253790_2257693_-	ATP-dependent RNA helicase HrpA	A0A1V0SIV3	Klosneuvirus	7.6e-54	29.5
WP_000048948.1\|2257893_2258499_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_032206699.1\|2259178_2259784_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_032206701.1\|2259954_2262261_-	DUF2773 domain-containing bactofilin	NA	NA	NA	NA
WP_024226022.1\|2262324_2263185_-	pyridoxine 4-dehydrogenase	NA	NA	NA	NA
WP_024226021.1\|2263416_2264007_-	phenylacetic acid degradation protein PaaY	NA	NA	NA	NA
WP_000039879.1\|2263988_2264939_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA
WP_032206703.1\|2265039_2266353_-	phenylacetate--CoA ligase	NA	NA	NA	NA
WP_032206704.1\|2266379_2267585_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_000018413.1\|2267584_2268007_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA
WP_032206706.1\|2267996_2269424_-	3-hydroxyacyl-CoA dehydrogenase PaaC	NA	NA	NA	NA
WP_000969780.1\|2269425_2270214_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA
WP_001292357.1\|2270213_2270981_-	2,3-dehydroadipyl-CoA hydratase	NA	NA	NA	NA
WP_032206707.1\|2270977_2272048_-	phenylacetate-CoA oxygenase/reductase subunit PaaK	NA	NA	NA	NA
WP_001189193.1\|2272055_2272553_-	phenylacetate degradation protein PaaD	NA	NA	NA	NA
WP_024226016.1\|2272567_2273314_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA
WP_000073393.1\|2273322_2273610_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA
WP_000191073.1\|2273621_2274551_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA
WP_032206709.1\|2274835_2276881_+	phenylacetic acid degradation bifunctional protein PaaZ	NA	NA	NA	NA
WP_060552864.1\|2277128_2279402_+	primary-amine oxidase	NA	NA	NA	NA
WP_000138622.1\|2279460_2280960_-	phenylacetaldehyde dehydrogenase	NA	NA	NA	NA
WP_032206711.1\|2281195_2282101_+	transcriptional regulator FeaR	NA	NA	NA	NA
WP_001325798.1\|2282272_2282602_-	YdbL family protein	NA	NA	NA	NA
WP_000698141.1\|2282606_2282792_-	YnbE family lipoprotein	NA	NA	NA	NA
WP_032206712.1\|2282788_2285428_-	YdbH family protein	NA	NA	NA	NA
WP_032206713.1\|2285635_2286625_+	D-lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	6.6e-71	44.0
WP_001298828.1\|2286735_2287158_+	heat shock protein HslJ	NA	NA	NA	NA
WP_032206714.1\|2287154_2287421_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_032206716.1\|2287694_2291219_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_032206718.1\|2291586_2292720_+	porin OmpN	Q1MVN1	Enterobacteria_phage	4.8e-118	58.8
WP_032206719.1\|2292860_2293295_+	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	3.0e-28	52.1
2293495:2293520	attL	NA	NA	NA	NA
WP_001143784.1\|2293875_2294517_-	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	6.8e-109	100.0
WP_001443810.1\|2294598_2295228_-	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.3e-77	92.2
WP_001131659.1\|2295300_2295876_-	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	5.3e-89	88.4
WP_001023406.1\|2295988_2296258_-\|tail	phage tail protein	Q6H9S8	Enterobacteria_phage	2.4e-44	97.8
WP_000279065.1\|2296259_2297582_-\|tail	tail fiber protein	Q687E6	Enterobacteria_phage	2.0e-75	98.6
WP_001228289.1\|2297646_2298246_-	Ail/Lom family protein	Q9EV15	Enterobacteria_phage	2.6e-110	100.0
WP_032208636.1\|2298313_2301787_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	90.0
WP_096851774.1\|2302027_2302657_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.3e-101	91.9
WP_000194798.1\|2302602_2303346_-\|tail	phage tail protein	Q9EYE4	Enterobacteria_phage	3.7e-151	100.0
WP_001356552.1\|2303356_2304055_-\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	3.6e-132	99.1
WP_000847298.1\|2304054_2304384_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_000918276.1\|2304380_2307026_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	99.4
WP_000532073.1\|2307069_2307378_-\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	1.3e-54	100.0
WP_000479043.1\|2307404_2307827_-\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	5.1e-73	100.0
WP_000235090.1\|2307840_2308593_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.8e-136	100.0
WP_000682716.1\|2308600_2308999_-\|tail	tail protein	Q9EYD7	Enterobacteria_phage	5.9e-71	100.0
WP_000974966.1\|2309011_2309635_-	hypothetical protein	Q9EYD6	Enterobacteria_phage	6.6e-101	100.0
WP_001281350.1\|2309637_2309919_-	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	3.9e-45	97.8
WP_001097065.1\|2309911_2310238_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
WP_129014759.1\|2310325_2312350_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.7
WP_000974564.1\|2312294_2313797_-\|portal	phage portal protein	Q9EYD2	Enterobacteria_phage	4.8e-291	100.0
WP_000102414.1\|2313796_2314009_-	hypothetical protein	S5MBY8	Escherichia_phage	1.1e-28	97.1
WP_001077625.1\|2314005_2316129_-\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	0.0e+00	100.0
WP_000348565.1\|2316125_2316602_-	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	2.1e-83	100.0
WP_001302882.1\|2316634_2316907_+	hypothetical protein	NA	NA	NA	NA
WP_012816791.1\|2317118_2317304_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000539792.1\|2317531_2317678_-	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_001056806.1\|2317677_2318247_-	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000087728.1\|2318517_2319051_-	lysozyme	A0A1I9LJR4	Stx_converting_phage	1.8e-102	100.0
WP_001072899.1\|2319055_2319271_-\|holin	holin	A0A0P0ZFW5	Escherichia_phage	9.0e-34	100.0
WP_001290230.1\|2319348_2319594_-	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000143458.1\|2319634_2319814_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_000142970.1\|2319950_2321897_-	DUF1737 domain-containing protein	A0A075M342	Escherichia_Stx1-converting_recombinant_phage	0.0e+00	98.5
WP_000640110.1\|2322598_2323141_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.9e-73	72.3
WP_000228017.1\|2323137_2323428_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	8.2e-46	87.5
WP_000940305.1\|2323427_2324027_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.0e-106	92.5
WP_071525388.1\|2324098_2324350_-	hypothetical protein	NA	NA	NA	NA
WP_000902698.1\|2324586_2324799_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.2e-17	70.0
WP_000418464.1\|2324921_2326043_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_001138877.1\|2326029_2326680_-	hypothetical protein	NA	NA	NA	NA
WP_000014164.1\|2326834_2327065_-	hypothetical protein	A0A2R2Z315	Escherichia_phage	4.1e-16	76.8
WP_001151116.1\|2327061_2327484_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.8e-63	90.6
WP_000450718.1\|2327499_2328261_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.0e-116	87.7
WP_000788984.1\|2328283_2329030_-	ATP-binding protein	V5UQI5	Shigella_phage	4.8e-114	80.9
WP_000702017.1\|2329902_2330325_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	5.9e-69	93.6
WP_001033914.1\|2330321_2330564_-	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	2.3e-17	62.1
WP_000410105.1\|2330660_2331080_+	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	3.1e-14	60.6
WP_000379547.1\|2331386_2331539_+	DUF1391 family protein	M4QQ57	Salicola_phage	1.0e-07	55.3
WP_000887681.1\|2331950_2332799_+	hypothetical protein	A0A0P0ZE80	Stx2-converting_phage	5.9e-60	60.8
WP_000560226.1\|2332845_2333067_+	killing protein KilR	A0A0U2RTC4	Escherichia_phage	6.9e-37	97.3
WP_000245534.1\|2333060_2333237_+	hypothetical protein	A0A0U2SHB5	Escherichia_phage	4.1e-24	89.7
WP_000102194.1\|2333317_2335987_+	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	4.2e-205	61.3
WP_000166315.1\|2335979_2336789_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
WP_042853000.1\|2336845_2337040_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	7.6e-32	96.9
WP_001356607.1\|2337032_2337221_+	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	1.6e-18	97.9
WP_000079604.1\|2337320_2337536_+	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_000040845.1\|2337537_2338773_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	1.1e-237	98.3
WP_001157382.1\|2338824_2339760_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.4e-147	99.6
2338849:2338874	attR	NA	NA	NA	NA
WP_000123758.1\|2339888_2341262_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_000387388.1\|2341746_2342730_-	zinc transporter ZntB	NA	NA	NA	NA
WP_000628065.1\|2342984_2344217_+	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5

DBSCAN-SWA_11

2360666 : 2427075

Escherichia_phage(34.78%)

integrase,transposase,protease,holin

attL 2419118:2419133|attR 2430618:2430633

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000088311.1\|2360666_2360969_+\|transposase	transposase	NA	NA	NA	NA
WP_060552866.1\|2361004_2361823_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.4e-65	44.9
WP_001365271.1\|2362863_2364405_-	transcriptional regulator TyrR	NA	NA	NA	NA
WP_032206830.1\|2364552_2365614_-	TIGR01620 family protein	NA	NA	NA	NA
WP_032206832.1\|2365610_2367008_-	YcjX family protein	NA	NA	NA	NA
WP_032206833.1\|2367162_2368161_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_032206834.1\|2368271_2369177_-	monomeric porin OmpG	NA	NA	NA	NA
WP_032206836.1\|2369221_2370304_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.6e-23	34.7
WP_000775790.1\|2370317_2370977_-	beta-phosphoglucomutase	NA	NA	NA	NA
WP_001299974.1\|2373237_2374293_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000690242.1\|2374302_2375091_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_032206837.1\|2375108_2376161_-	zinc-binding alcohol dehydrogenase	NA	NA	NA	NA
WP_032206838.1\|2376191_2377034_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_032206839.1\|2377020_2377902_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_000597447.1\|2377922_2379215_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_032206840.1\|2379228_2380908_-	glucosylglycerate phosphorylase	NA	NA	NA	NA
WP_000473109.1\|2381119_2381434_-	thiosulfate sulfurtransferase PspE	NA	NA	NA	NA
WP_000907387.1\|2381738_2382098_-	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_001274963.1\|2382097_2382322_-	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_000511025.1\|2382375_2383044_-	phage shock protein PspA	NA	NA	NA	NA
WP_000852835.1\|2383210_2384188_+	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_000069226.1\|2384305_2385571_-	4-aminobutyrate transaminase	A0A1V0SKB7	Klosneuvirus	3.5e-24	27.0
WP_032206842.1\|2385608_2386889_-	gamma-glutamylputrescine oxidase	NA	NA	NA	NA
WP_032206843.1\|2386890_2388369_-	aldehyde dehydrogenase PuuC	NA	NA	NA	NA
WP_032206846.1\|2388518_2389076_-	HTH-type transcriptional regulator PuuR	NA	NA	NA	NA
WP_001300506.1\|2389102_2389867_-	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	NA	NA	NA
WP_120795382.1\|2391644_2391809_+	protein YmjE	NA	NA	NA	NA
WP_024225995.1\|2391798_2393184_+	putrescine/proton symporter PuuP	NA	NA	NA	NA
WP_001015110.1\|2393317_2393563_+	YmjA family protein	NA	NA	NA	NA
WP_001250213.1\|2393875_2395519_+	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA
WP_000583277.1\|2395515_2396481_+	peptide ABC transporter permease SapB	NA	NA	NA	NA
WP_060552867.1\|2396622_2405004_-	hypothetical protein	A0A0P0ZFK4	Escherichia_phage	0.0e+00	98.4
WP_106888148.1\|2405864_2407077_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
WP_106918794.1\|2410307_2411021_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001303877.1\|2411115_2411355_-	hypothetical protein	Q9MC00	Enterobacteria_phage	7.7e-18	98.0
WP_032206343.1\|2411641_2412460_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_032206342.1\|2412613_2412985_-	antitermination protein	Q777W5	Enterobacteria_phage	1.2e-52	83.2
WP_001217436.1\|2412974_2413346_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	63.7
WP_047618481.1\|2413358_2414408_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.5e-110	54.6
WP_047088205.1\|2414409_2414688_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
WP_001013632.1\|2414855_2415068_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.0e-25	95.4
WP_122083109.1\|2415112_2415220_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	3.8e-09	100.0
WP_096913359.1\|2415226_2415436_-	hypothetical protein	A0A0N7BTS3	Escherichia_phage	1.6e-06	69.0
WP_106888170.1\|2415401_2416615_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.6e-167	98.6
WP_000284518.1\|2416978_2417194_-\|holin	holin	Q6H9V8	Enterobacteria_phage	2.0e-33	100.0
WP_001290231.1\|2417270_2417543_-	DUF826 domain-containing protein	A0A0P0ZBB8	Stx2-converting_phage	2.2e-21	100.0
WP_000143458.1\|2417583_2417763_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
2419118:2419133	attL	NA	NA	NA	NA
WP_000301787.1\|2420645_2421359_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_074433665.1\|2421493_2421691_-	TrmB family transcriptional regulator	S5MQK8	Escherichia_phage	1.4e-25	93.8
WP_001452492.1\|2421917_2422286_-	antitermination protein	K7P7B9	Enterobacteria_phage	7.0e-34	64.2
WP_106888148.1\|2422343_2423557_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
WP_032207949.1\|2423806_2424970_+\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	1.9e-226	99.5
WP_077744831.1\|2425007_2425562_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	4.1e-62	57.1
WP_032207946.1\|2425563_2426418_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000148710.1\|2426460_2427075_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
2430618:2430633	attR	NA	NA	NA	NA

DBSCAN-SWA_12

2672181 : 2766583

107

Enterobacteria_phage(40.0%)

tRNA,terminase,portal,integrase,protease,holin,tail

attL 2704703:2704718|attR 2771107:2771122

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000984517.1\|2672181_2673063_-\|protease	protease HtpX	NA	NA	NA	NA
WP_001315679.1\|2673254_2675303_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	6.8e-86	33.5
WP_000431370.1\|2675322_2676021_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_001043882.1\|2676117_2676615_-	L-methionine (R)-S-oxide reductase	NA	NA	NA	NA
WP_001207283.1\|2676744_2678028_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_032207807.1\|2677996_2680630_+	lipid-binding membrane homeostasis protein YebT	NA	NA	NA	NA
WP_001295499.1\|2682265_2682502_+	DUF1480 family protein	NA	NA	NA	NA
WP_000929530.1\|2682522_2682798_+	YebW family protein	NA	NA	NA	NA
WP_000812724.1\|2682798_2683455_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	3.1e-56	50.2
WP_000976472.1\|2683850_2684192_-	YebY family protein	NA	NA	NA	NA
WP_000168747.1\|2685080_2685455_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000916763.1\|2685593_2685824_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.3e-14	61.8
WP_032207802.1\|2685925_2686582_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_000944256.1\|2686605_2687268_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.0e-07	41.6
WP_032207799.1\|2687264_2689325_-	oligopeptidase B	NA	NA	NA	NA
WP_000024745.1\|2689533_2690193_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_001295500.1\|2690519_2690876_-	protein YebF	NA	NA	NA	NA
WP_000257738.1\|2690942_2691233_-	DNA damage-inducible protein YebG	NA	NA	NA	NA
WP_000173484.1\|2691366_2692545_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_000800512.1\|2692600_2693242_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_001069467.1\|2693278_2695090_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_000301720.1\|2695324_2696800_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	9.9e-79	37.3
WP_001056706.1\|2697137_2698007_+	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA
WP_000091148.1\|2698134_2699577_+	pyruvate kinase	NA	NA	NA	NA
WP_000448381.1\|2699708_2700680_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_060552871.1\|2700799_2702122_-	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.2e-14	40.9
WP_032207954.1\|2702137_2703070_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_000202996.1\|2703148_2703904_+	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	1.3e-18	28.3
WP_032207795.1\|2703900_2704686_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
2704703:2704718	attL	NA	NA	NA	NA
WP_000568519.1\|2704834_2705845_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_000580326.1\|2705853_2706465_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_072095795.1\|2706603_2706669_-	hypothetical protein	NA	NA	NA	NA
WP_032207793.1\|2706740_2707343_+	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_001295503.1\|2707344_2707866_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_032207791.1\|2707900_2708641_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_032207953.1\|2708669_2709122_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_032207789.1\|2709239_2711012_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_001552993.1\|2711321_2711888_+	hydrolase	NA	NA	NA	NA
WP_001217551.1\|2712241_2712490_+	DinI-like family protein	K7PLW4	Enterobacteria_phage	3.8e-36	93.9
WP_099561169.1\|2712626_2712749_+	zinc/iron-chelating domain-containing protein	NA	NA	NA	NA
WP_001132098.1\|2712735_2713326_-	bfpT-regulated chaperone	NA	NA	NA	NA
WP_001144084.1\|2713509_2714160_+	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	1.1e-37	40.7
WP_001434995.1\|2714238_2715297_+	T3SS effector EspW	NA	NA	NA	NA
WP_012816780.1\|2715424_2716060_-	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	3.7e-75	92.0
WP_001101700.1\|2716821_2717091_-\|tail	phage tail protein	H6WZN0	Escherichia_phage	1.9e-44	97.8
WP_032362297.1\|2717092_2718406_-\|tail	tail fiber protein	H6WZM9	Escherichia_phage	9.7e-78	98.4
WP_032162956.1\|2718470_2719070_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	3.7e-109	99.0
WP_060552873.1\|2719136_2722616_-	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	89.6
WP_071887493.1\|2722676_2723309_-\|tail	tail assembly protein	C6ZCZ4	Enterobacteria_phage	7.4e-92	96.7
WP_000140735.1\|2723245_2723989_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	3.4e-144	94.3
WP_001152532.1\|2723993_2724692_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	8.9e-131	97.8
WP_000847345.1\|2724691_2725021_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_000918276.1\|2725017_2727663_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	99.4
WP_000532073.1\|2727706_2728015_-\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	1.3e-54	100.0
WP_000479043.1\|2728041_2728464_-\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	5.1e-73	100.0
WP_000235090.1\|2728477_2729230_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.8e-136	100.0
WP_000682716.1\|2729237_2729636_-\|tail	tail protein	Q9EYD7	Enterobacteria_phage	5.9e-71	100.0
WP_000974966.1\|2729648_2730272_-	hypothetical protein	Q9EYD6	Enterobacteria_phage	6.6e-101	100.0
WP_001281350.1\|2730274_2730556_-	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	3.9e-45	97.8
WP_001097065.1\|2730548_2730875_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
WP_129014759.1\|2730962_2732987_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.7
WP_000974564.1\|2732931_2734434_-\|portal	phage portal protein	Q9EYD2	Enterobacteria_phage	4.8e-291	100.0
WP_000102414.1\|2734433_2734646_-	hypothetical protein	S5MBY8	Escherichia_phage	1.1e-28	97.1
WP_001077625.1\|2734642_2736766_-\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	0.0e+00	100.0
WP_000348565.1\|2736762_2737239_-	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	2.1e-83	100.0
WP_001302882.1\|2737271_2737544_+	hypothetical protein	NA	NA	NA	NA
WP_012816791.1\|2737755_2737941_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000539792.1\|2738168_2738315_-	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_001056806.1\|2738314_2738884_-	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000087728.1\|2739154_2739688_-	lysozyme	A0A1I9LJR4	Stx_converting_phage	1.8e-102	100.0
WP_001072899.1\|2739692_2739908_-\|holin	holin	A0A0P0ZFW5	Escherichia_phage	9.0e-34	100.0
WP_001290230.1\|2739985_2740231_-	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000143458.1\|2740271_2740451_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_000142970.1\|2740587_2742534_-	DUF1737 domain-containing protein	A0A075M342	Escherichia_Stx1-converting_recombinant_phage	0.0e+00	98.5
WP_000301787.1\|2743337_2744051_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_047618655.1\|2744186_2744384_-	hypothetical protein	S5MQK8	Escherichia_phage	1.3e-26	95.4
WP_000640037.1\|2744606_2745161_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.0e-65	66.9
WP_001215507.1\|2745169_2745529_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	4.3e-36	60.3
WP_001064806.1\|2745528_2745786_-	hypothetical protein	Q8W639	Enterobacteria_phage	2.2e-34	97.5
WP_000184331.1\|2745782_2747183_-	replicative DNA helicase	Q8W640	Enterobacteria_phage	5.4e-252	94.8
WP_000181080.1\|2747179_2748070_-	ATP-binding protein	Q8W641	Enterobacteria_phage	2.6e-82	63.3
WP_001247847.1\|2748087_2748981_-	hypothetical protein	C5IHL2	Burkholderia_virus	2.1e-60	45.9
WP_060552874.1\|2748967_2749201_-	hypothetical protein	NA	NA	NA	NA
WP_060552913.1\|2749197_2750046_-	peptidase	Q8HA97	Salmonella_phage	1.1e-93	63.6
WP_001193680.1\|2750063_2750273_-	restriction alleviation protein, Lar family	NA	NA	NA	NA
WP_050437784.1\|2750272_2751133_-	ORF6N domain-containing protein	F1C5A3	Cronobacter_phage	1.4e-53	42.2
WP_064754158.1\|2751209_2751509_-	Cro/Cl family transcriptional regulator	A0A1B5FPK9	Escherichia_phage	1.8e-35	90.9
WP_000800135.1\|2751642_2752332_+	LexA family transcriptional regulator	A0A1B5FPF4	Escherichia_phage	8.0e-116	87.8
WP_012816784.1\|2752476_2753169_+	helix-turn-helix domain-containing protein	A0A1B5FPB8	Escherichia_phage	1.1e-40	69.2
WP_000147365.1\|2753174_2753375_+	hypothetical protein	NA	NA	NA	NA
WP_000312938.1\|2753574_2753934_+	hypothetical protein	A0A1B5FPB3	Escherichia_phage	1.4e-42	73.1
WP_000002321.1\|2753933_2754149_+	hypothetical protein	A0A1B5FPB7	Escherichia_phage	1.2e-17	63.4
WP_162137203.1\|2754216_2754339_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	7.9e-11	80.0
WP_000566773.1\|2754335_2754728_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	4.7e-36	57.9
WP_001091864.1\|2755345_2755717_+	DUF5406 family protein	Q8W655	Enterobacteria_phage	3.8e-64	98.4
WP_000492057.1\|2755748_2755991_+	DUF4222 domain-containing protein	Q8W656	Enterobacteria_phage	2.4e-35	92.5
WP_001030139.1\|2755994_2756141_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	3.1e-22	95.8
WP_000073102.1\|2756149_2756386_+	excisionase family protein	Q8W657	Enterobacteria_phage	8.4e-41	98.7
WP_000362001.1\|2756441_2757755_+\|integrase	site-specific integrase	Q8W658	Enterobacteria_phage	2.8e-250	97.0
WP_049768377.1\|2757736_2758507_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.1e-72	99.2
WP_000252980.1\|2758559_2758955_+	hypothetical protein	NA	NA	NA	NA
WP_000019588.1\|2758995_2759739_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000564746.1\|2759735_2760707_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_074433494.1\|2760871_2762920_-	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	NA	NA	NA
WP_032206488.1\|2763307_2764054_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001300190.1\|2764067_2764634_-	VOC family protein	NA	NA	NA	NA
WP_001025342.1\|2764849_2766583_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
2771107:2771122	attR	NA	NA	NA	NA

DBSCAN-SWA_13

2795844 : 2834740

Enterobacteria_phage(80.95%)

terminase,portal,integrase,head,plate,transposase,capsid,holin,tail

attL 2795615:2795674|attR 2835679:2835802

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2795615:2795674	attL	NA	NA	NA	NA
WP_032206500.1\|2795844_2796846_-\|integrase	tyrosine-type recombinase/integrase	Q94N03	Haemophilus_virus	2.1e-104	58.2
WP_000865208.1\|2796851_2797199_-	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_000290355.1\|2797228_2797879_-	membrane protein	NA	NA	NA	NA
WP_000786769.1\|2797894_2798299_-	transcriptional regulator	Q6QID2	Burkholderia_phage	1.6e-23	53.8
WP_001673482.1\|2798388_2798526_-	hypothetical protein	NA	NA	NA	NA
WP_000014504.1\|2798597_2798801_+	DNA-binding protein	P79674	Haemophilus_phage	3.1e-07	45.2
WP_000739029.1\|2798822_2799173_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	8.6e-50	81.9
WP_000159462.1\|2799183_2799462_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	3.6e-35	81.5
WP_000514281.1\|2799473_2799716_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	4.4e-37	98.8
WP_000021668.1\|2799712_2799826_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.2e-08	91.9
WP_000985145.1\|2799912_2800116_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.3e-26	86.6
WP_000153684.1\|2800112_2800358_+	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	3.4e-37	91.4
WP_032206502.1\|2800499_2800865_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	2.4e-58	95.0
WP_032206503.1\|2800871_2803694_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	96.8
WP_000686557.1\|2803770_2804730_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	8.4e-180	99.4
WP_000211293.1\|2804734_2805049_+	peptide transporter	A0A0A7NPT5	Enterobacteria_phage	3.5e-18	51.9
WP_032206504.1\|2805068_2805488_+	hypothetical protein	A0A0A7NRY2	Enterobacteria_phage	4.2e-19	42.6
WP_000224220.1\|2805489_2805753_+	hypothetical protein	A0A2P0P958	Salmonella_phage	6.7e-31	73.6
WP_000236495.1\|2806338_2806863_+	hypothetical protein	NA	NA	NA	NA
WP_032206507.1\|2806877_2807924_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.9e-201	99.4
WP_050439336.1\|2807923_2809225_-\|terminase	terminase	A0A0A7NV54	Enterobacteria_phage	2.0e-229	97.6
WP_000088311.1\|2809240_2809543_+\|transposase	transposase	NA	NA	NA	NA
WP_000336626.1\|2809578_2810397_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.0e-66	45.2
WP_050439337.1\|2810393_2810942_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	1.4e-91	97.0
WP_001262679.1\|2811096_2811933_+\|capsid	phage capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	5.1e-149	98.9
WP_000632313.1\|2813055_2813856_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	6.9e-127	89.5
WP_000063100.1\|2813957_2814452_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.9e-87	97.0
WP_000864901.1\|2814451_2814652_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_001342221.1\|2814654_2814978_+\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.7e-47	93.5
WP_000072343.1\|2814974_2815367_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	2.9e-70	98.5
WP_000780555.1\|2815363_2815771_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	4.2e-64	95.6
WP_001342220.1\|2817811_2818279_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	6.7e-82	94.8
WP_000356339.1\|2818271_2818907_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.1e-114	100.0
WP_001271917.1\|2818903_2819485_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	2.8e-101	97.4
WP_000127182.1\|2819481_2819832_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	7.8e-59	98.3
WP_032206508.1\|2820723_2821332_+\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	6.5e-85	73.9
WP_032206510.1\|2821328_2823332_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	9.2e-96	42.6
WP_032206512.1\|2823331_2823910_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	7.7e-96	89.5
WP_000954200.1\|2823953_2824526_-	serine acetyltransferase	NA	NA	NA	NA
WP_000979946.1\|2824682_2825171_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	8.8e-85	99.4
WP_106888148.1\|2826645_2827858_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
WP_001391627.1\|2829290_2829419_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	1.5e-15	95.2
WP_000665305.1\|2829454_2829820_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	1.4e-55	96.7
WP_000290443.1\|2829874_2830387_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.7e-92	98.8
WP_032206883.1\|2830386_2831571_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	1.1e-221	97.7
WP_032206881.1\|2831728_2832838_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	9.0e-202	97.8
WP_050439343.1\|2832880_2833141_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000336626.1\|2833137_2833956_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.0e-66	45.2
WP_000088311.1\|2833991_2834294_-\|transposase	transposase	NA	NA	NA	NA
WP_000078920.1\|2834599_2834740_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	7.0e-19	100.0
2835679:2835802	attR	NA	NA	NA	NA

DBSCAN-SWA_14

2876464 : 2948196

Enterobacteria_phage(35.14%)

terminase,integrase,head,transposase,capsid,lysis,holin,tail

attL 2875418:2875434|attR 2953038:2953054

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2875418:2875434	attL	NA	NA	NA	NA
WP_000169527.1\|2876464_2876764_+\|transposase	transposase	NA	NA	NA	NA
WP_000878219.1\|2876760_2877627_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
WP_000218207.1\|2878833_2879685_+	protein deglycase HchA	NA	NA	NA	NA
WP_032207117.1\|2879792_2881151_-	two-component system sensor histidine kinase HprS	Q8QKV7	Ectocarpus_siliculosus_virus	8.7e-05	20.2
WP_001339045.1\|2881150_2881822_-	response regulator transcription factor HprR	W8CYM9	Bacillus_phage	5.4e-32	35.2
WP_032205316.1\|2881954_2882368_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_000740103.1\|2882476_2883481_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_001240105.1\|2883481_2884117_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_001007759.1\|2884373_2885024_+	metal-binding protein ZinT	NA	NA	NA	NA
WP_085972493.1\|2885494_2886767_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_032207191.1\|2888231_2888885_+	type III secretion system effector ADP-ribosyltransferase EspJ	NA	NA	NA	NA
WP_071887496.1\|2889209_2889941_+	molecular chaperone Tir	NA	NA	NA	NA
WP_129014760.1\|2890066_2891650_-\|tail	phage tail protein	Q9EYE8	Enterobacteria_phage	4.2e-59	100.0
WP_001230532.1\|2891714_2892314_-	Ail/Lom family outer membrane beta-barrel protein	B6ETG5	Enterobacteria_phage	4.4e-110	99.0
WP_106888148.1\|2893109_2894322_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
WP_001370486.1\|2896706_2900108_-	type III secretion system effector EspN	A0A0N7KZG3	Stx2-converting_phage	1.3e-219	39.3
WP_032206908.1\|2900699_2903048_-	type III secretion system effector E3 ubiquitin ligase NleL	NA	NA	NA	NA
WP_115801847.1\|2903067_2903157_-	hypothetical protein	NA	NA	NA	NA
WP_129014760.1\|2903263_2904847_-\|tail	phage tail protein	Q9EYE8	Enterobacteria_phage	4.2e-59	100.0
WP_001230532.1\|2904911_2905511_-	Ail/Lom family outer membrane beta-barrel protein	B6ETG5	Enterobacteria_phage	4.4e-110	99.0
WP_060552875.1\|2905577_2909054_-	host specificity protein J	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	96.1
WP_000649829.1\|2909187_2909715_+	superoxide dismutase family protein	Q9MC02	Salmonella_phage	1.8e-59	60.5
WP_122993101.1\|2909905_2910538_-\|tail	tail assembly protein	A0A0P0ZDX8	Stx2-converting_phage	7.6e-105	98.6
WP_060552876.1\|2910483_2911227_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.8e-145	96.0
WP_032207182.1\|2911232_2911931_-\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	4.7e-132	98.7
WP_000807944.1\|2911930_2912272_-\|tail	phage tail protein	H6WZM2	Escherichia_phage	1.2e-61	98.2
WP_001513217.1\|2915578_2915788_-	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_001030063.1\|2915883_2916258_-\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_047619258.1\|2916263_2916980_-\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	4.3e-128	99.2
WP_000133391.1\|2917046_2917391_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	9.4e-57	99.1
WP_000573374.1\|2917387_2917834_-	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_060552877.1\|2917830_2918181_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	2.7e-59	99.1
WP_000125990.1\|2918190_2918517_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001063096.1\|2920878_2921100_-	hypothetical protein	H6WZL1	Escherichia_phage	3.4e-36	100.0
WP_060552881.1\|2921144_2923082_-\|capsid	phage major capsid protein	B6ETE8	Enterobacteria_phage	0.0e+00	99.5
WP_032207769.1\|2924803_2925367_-\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	1.6e-58	79.5
WP_032207766.1\|2925655_2926021_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.3e-64	97.5
WP_085972493.1\|2926193_2927467_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_000736096.1\|2927994_2928219_-	hypothetical protein	NA	NA	NA	NA
WP_047618419.1\|2928215_2928710_-\|lysis	lysis protein	Q9ZXB6	Enterobacteria_phage	1.1e-82	98.8
WP_047087679.1\|2929007_2929541_-	lysozyme	A0A0N7KZF9	Stx2-converting_phage	1.6e-100	98.9
WP_000731236.1\|2929591_2929936_-	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.0e-58	100.0
WP_000411811.1\|2929940_2930147_-\|holin	holin	O48430	Enterobacteria_phage	1.8e-31	100.0
WP_060552882.1\|2930590_2932441_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.7
WP_001344632.1\|2932884_2933016_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	5.2e-08	85.7
WP_106888148.1\|2935111_2936324_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
WP_000096346.1\|2937654_2937858_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000533619.1\|2937857_2938883_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.0e-102	57.9
WP_001515476.1\|2939118_2939916_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_064734930.1\|2940378_2946978_+	inverse autotransporter adhesin YeeJ	NA	NA	NA	NA
WP_106888148.1\|2946983_2948196_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
2953038:2953054	attR	NA	NA	NA	NA

DBSCAN-SWA_15

3081750 : 3154085

Enterobacteria_phage(40.0%)

transposase,tRNA,tail,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085972493.1\|3081750_3083024_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_000289788.1\|3084661_3085516_-	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000129551.1\|3085823_3086876_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_032206398.1\|3087132_3088410_+	MFS transporter	NA	NA	NA	NA
WP_000846217.1\|3088406_3089411_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	7.5e-14	29.4
WP_032206397.1\|3089407_3090373_+	sugar kinase	NA	NA	NA	NA
WP_000434038.1\|3090346_3091093_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_001351455.1\|3091144_3091963_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	1.7e-24	38.5
WP_000822286.1\|3092027_3092828_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_032206395.1\|3092824_3093613_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000019944.1\|3093835_3094108_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_000134582.1\|3094227_3095052_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_032206009.1\|3095270_3095609_+	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_032206010.1\|3095690_3096725_-	putative fimbrial-like adhesin protein	NA	NA	NA	NA
WP_000677393.1\|3099235_3099910_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_032206011.1\|3099989_3100532_-	fimbrial protein	NA	NA	NA	NA
WP_001324851.1\|3100822_3101104_-	YehE family protein	NA	NA	NA	NA
WP_001005448.1\|3101366_3102476_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_001295427.1\|3102607_3104641_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6
WP_032206012.1\|3104781_3108576_+	WGR and DUF4132 domain-containing protein	NA	NA	NA	NA
WP_000636939.1\|3112279_3112597_+	hypothetical protein	NA	NA	NA	NA
WP_032206972.1\|3112903_3113992_+	MoxR family ATPase	NA	NA	NA	NA
WP_032206971.1\|3114002_3116282_+	hypothetical protein	NA	NA	NA	NA
WP_001292764.1\|3116274_3117411_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	8.5e-163	97.7
WP_000088311.1\|3118930_3119233_+\|transposase	transposase	NA	NA	NA	NA
WP_060552884.1\|3119268_3120087_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.7e-65	44.9
WP_032207041.1\|3120799_3121261_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	9.2e-76	99.3
WP_032207043.1\|3121300_3121771_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.1e-81	99.4
WP_000598641.1\|3121817_3122537_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_032207044.1\|3124732_3124981_+	DinI-like family protein	Q687E4	Enterobacteria_phage	3.4e-32	82.9
WP_001121225.1\|3125575_3126226_+	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	1.2e-121	99.1
WP_000491544.1\|3126450_3127326_-	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	9.7e-159	97.9
WP_047087983.1\|3127465_3127735_-\|tail	phage tail protein	Q6H9S8	Enterobacteria_phage	1.6e-43	95.5
WP_106918807.1\|3128259_3129416_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.7e-68	45.1
WP_000499454.1\|3129849_3130008_-	DUF3927 family protein	NA	NA	NA	NA
WP_122998106.1\|3130093_3130837_-	hypothetical protein	NA	NA	NA	NA
WP_032160865.1\|3131724_3131847_-	YlcG family protein	NA	NA	NA	NA
WP_000750155.1\|3132183_3133143_+	lipid A deacylase LpxR family protein	NA	NA	NA	NA
WP_001028854.1\|3133354_3134020_-	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	5.0e-131	99.5
WP_032208532.1\|3134016_3134628_-	recombination protein NinG	Q716C3	Shigella_phage	3.7e-96	96.6
WP_032208534.1\|3134620_3134791_-	protein ninF	K7PMD9	Enterobacterial_phage	1.6e-25	96.4
WP_001254257.1\|3134787_3134970_-	NinE family protein	A0A0P0ZC71	Stx2-converting_phage	4.3e-29	100.0
WP_064756364.1\|3134966_3135464_-	phage N-6-adenine-methyltransferase	K7PJZ4	Enterobacterial_phage	5.4e-90	100.0
WP_029208472.1\|3137246_3137948_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	3.9e-102	99.5
WP_001216963.1\|3138007_3138115_+	protein YohO	NA	NA	NA	NA
WP_032206266.1\|3138095_3138827_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_032206267.1\|3138831_3139758_-	glycine betaine ABC transporter ATP binding protein YehX	G9BWD6	Planktothrix_phage	9.7e-24	34.6
WP_032206269.1\|3139750_3140908_-	glycine betaine ABC transporter permease YehY	NA	NA	NA	NA
WP_001130307.1\|3140914_3141832_-	glycine betaine ABC transporter substrate-binding protein OsmF	NA	NA	NA	NA
WP_032206270.1\|3142042_3144340_-	beta-glucosidase BglX	NA	NA	NA	NA
WP_032206271.1\|3144535_3146251_+	D-lactate dehydrogenase	NA	NA	NA	NA
WP_032206272.1\|3146289_3147222_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_001295454.1\|3147395_3147983_-	YIP1 family protein	NA	NA	NA	NA
WP_001307896.1\|3148152_3148731_+	DedA family protein	NA	NA	NA	NA
WP_000079520.1\|3148860_3149622_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_122993082.1\|3149674_3151201_-	multidrug resistance outer membrane protein MdtQ	NA	NA	NA	NA
WP_000691708.1\|3151334_3151418_+	protein YohP	NA	NA	NA	NA
WP_032206306.1\|3151805_3152756_-\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_032206274.1\|3152994_3153393_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_000968208.1\|3153389_3154085_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA

DBSCAN-SWA_16

3979447 : 4038965

Enterobacteria_phage(37.5%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000786911.1\|3979447_3980167_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_032207716.1\|3980327_3981380_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_032207717.1\|3981407_3981683_+	oxidative damage protection protein	NA	NA	NA	NA
WP_032207718.1\|3981747_3982827_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_032207719.1\|3983028_3984285_+	nucleoside permease NupG	NA	NA	NA	NA
WP_032207721.1\|3984334_3986470_-	ornithine decarboxylase	NA	NA	NA	NA
WP_032207724.1\|3986867_3987557_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_106888188.1\|3989223_3990496_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	4.9e-175	98.0
WP_001145628.1\|3991802_3992441_-	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	9.0e-45	42.7
WP_032208610.1\|3992638_3993223_+	bfpT-regulated chaperone	NA	NA	NA	NA
WP_032208608.1\|3993467_3994211_-	type III secretion system LEE effector EspF	NA	NA	NA	NA
WP_000245867.1\|3994426_3994705_-	EscG/YscG/SsaH family type III secretion system needle protein co-chaperone	NA	NA	NA	NA
WP_001053840.1\|3994710_3994932_-	type III secretion system LEE needle filament protein EscF	NA	NA	NA	NA
WP_000228587.1\|3994968_3995376_-	type III secretion system LEE chaperone CesD2	NA	NA	NA	NA
WP_001092012.1\|3995382_3996327_-	type III secretion system LEE translocon pore-forming subunit EspB	NA	NA	NA	NA
WP_032208606.1\|3996347_3997490_-	type III secretion system translocon subunit SctE	NA	NA	NA	NA
WP_032208605.1\|3997502_3998081_-	type III secretion system LEE translocon filament protein EspA	NA	NA	NA	NA
WP_032208604.1\|3998138_3999194_-	type III secretion system LEE gatekeeper SepL	NA	NA	NA	NA
WP_000953242.1\|3999336_4000557_+	type III secretion system LEE inner membrane ring protein EscD	NA	NA	NA	NA
WP_032208603.1\|4000936_4003783_-	intimin type epsilon	NA	NA	NA	NA
WP_000098791.1\|4003843_4004314_-	type III secretion system LEE chaperone CesT	NA	NA	NA	NA
WP_032208600.1\|4004445_4006062_-	type III secretion system LEE translocated intimin receptor Tir	NA	NA	NA	NA
WP_032208599.1\|4006510_4007122_-	T3SS effector protein Map	NA	NA	NA	NA
WP_001005228.1\|4007390_4007750_+	Tir chaperone family protein	NA	NA	NA	NA
WP_001374266.1\|4007968_4008484_-	hypothetical protein	NA	NA	NA	NA
WP_032208598.1\|4008514_4009432_-	type III secretion system protein SepQ	NA	NA	NA	NA
WP_001443671.1\|4009394_4009811_-	DUF1106 domain-containing protein	NA	NA	NA	NA
WP_001062953.1\|4009803_4010124_-	hypothetical protein	NA	NA	NA	NA
WP_000622550.1\|4010183_4011524_-	type III secretion system LEE ATPase EscN	NA	NA	NA	NA
WP_032208597.1\|4011507_4013535_-	type III secretion system LEE export apparatus protein EscV	NA	NA	NA	NA
WP_001050414.1\|4013531_4013885_-	type III secretion system LEE chaperone CesL	NA	NA	NA	NA
WP_032208595.1\|4014069_4014366_+	type III secretion system protein SepZ	NA	NA	NA	NA
WP_001059795.1\|4014449_4014827_+	type III secretion system inner rod subunit SctI	NA	NA	NA	NA
WP_001233824.1\|4014828_4015401_+	type III secretion system LEE inner membrane ring protein EscJ	NA	NA	NA	NA
WP_001063688.1\|4015406_4015862_+	hypothetical protein	NA	NA	NA	NA
WP_000723928.1\|4015861_4017400_+	type III secretion system LEE outer membrane ring protein EscC	D0U184	Enterobacteria_phage	2.0e-10	28.9
WP_000087469.1\|4017413_4017869_+	type III secretion system LEE chaperone CesD	NA	NA	NA	NA
WP_000444181.1\|4018254_4018668_-	type III secretion system LEE transcriptional regulator GrlA	NA	NA	NA	NA
WP_032208593.1\|4018742_4019099_-	negative regulator GrlR	NA	NA	NA	NA
WP_032208616.1\|4019295_4019754_+	type III secretion system LEE muramidase EtgA	NA	NA	NA	NA
WP_001291686.1\|4019750_4020788_-	type III secretion system LEE export apparatus switch protein EscU	NA	NA	NA	NA
WP_001002808.1\|4020780_4021557_-	type III secretion system LEE export apparatus protein EscT	NA	NA	NA	NA
WP_000447503.1\|4021556_4021826_-	type III secretion system LEE export apparatus protein EscS	NA	NA	NA	NA
WP_001299990.1\|4021825_4022479_-	type III secretion system LEE export apparatus protein EscR	NA	NA	NA	NA
WP_032208591.1\|4022483_4023137_-	hypothetical protein	NA	NA	NA	NA
WP_000153999.1\|4023123_4023723_-	hypothetical protein	NA	NA	NA	NA
WP_000084152.1\|4023719_4024034_-	hypothetical protein	NA	NA	NA	NA
WP_000628726.1\|4024046_4024265_-	type III secretion system LEE co-chaperone EscE	NA	NA	NA	NA
WP_001365456.1\|4024279_4024651_-	type III secretion system LEE master regulator Ler	NA	NA	NA	NA
WP_122993095.1\|4025858_4027004_+	secretion protein EspG	NA	NA	NA	NA
WP_050439365.1\|4027185_4027968_+	YjiK family protein	NA	NA	NA	NA
WP_077744848.1\|4028173_4028791_+	T3SS effector protein EspS	A0A0P0ZCT1	Stx2-converting_phage	4.5e-78	77.2
WP_129014762.1\|4028795_4030068_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.1e-174	98.0
WP_032207120.1\|4031110_4035202_+\|protease	serine protease autotransporter EspI	Q9LA58	Enterobacterial_phage	6.8e-311	44.6
WP_000088311.1\|4035748_4036051_+\|transposase	transposase	NA	NA	NA	NA
WP_060552861.1\|4036086_4036905_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.5e-65	44.9
WP_000854916.1\|4037063_4037441_+	toxin	NA	NA	NA	NA
WP_106888148.1\|4037752_4038965_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0

DBSCAN-SWA_17

4307536 : 4371480

uncultured_Mediterranean_phage(18.18%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000639208.1\|4307536_4307842_+\|transposase	transposase	NA	NA	NA	NA
WP_000979880.1\|4307917_4308382_-	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_000209007.1\|4308378_4309254_-	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_000054239.1\|4309250_4309940_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_000108473.1\|4309987_4311478_-	sialic acid transporter NanT	Q6JIH2	Burkholderia_virus	4.9e-09	23.9
WP_000224714.1\|4311587_4312481_-	N-acetylneuraminate lyase	NA	NA	NA	NA
WP_032208179.1\|4312602_4313394_-	transcriptional regulator NanR	NA	NA	NA	NA
WP_032208181.1\|4313773_4315141_+	anaerobic C4-dicarboxylate transporter DcuC	NA	NA	NA	NA
WP_000366129.1\|4315183_4315681_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.3e-26	42.9
WP_032208183.1\|4315686_4316325_-	stringent starvation protein A	NA	NA	NA	NA
WP_000829818.1\|4316719_4317112_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_000847559.1\|4317127_4317556_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_001192305.1\|4317774_4318902_-	cell division protein ZapE	NA	NA	NA	NA
WP_001295270.1\|4319095_4319494_+	DUF1043 family protein	NA	NA	NA	NA
WP_001295271.1\|4319647_4321015_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	2.3e-21	25.6
WP_000497723.1\|4321104_4322172_+	outer membrane-stress sensor serine endopeptidase DegS	A0A1S5Y2X3	uncultured_archaeal_virus	6.8e-05	24.2
WP_012565174.1\|4322234_4323173_-	malate dehydrogenase	NA	NA	NA	NA
WP_032208186.1\|4323607_4324078_+	transcriptional regulator ArgR	NA	NA	NA	NA
WP_000695690.1\|4324442_4324706_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_001029013.1\|4324761_4325034_-	barnase inhibitor	NA	NA	NA	NA
WP_032208188.1\|4325125_4327093_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_000854021.1\|4327098_4328031_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_000051841.1\|4328038_4328242_-	AaeX family protein	NA	NA	NA	NA
WP_000440317.1\|4328424_4329354_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_000055909.1\|4329481_4330927_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_032208189.1\|4331082_4334883_-	AsmA2 domain-containing protein	NA	NA	NA	NA
WP_000123197.1\|4334950_4336420_-	ribonuclease G	NA	NA	NA	NA
WP_000203096.1\|4336409_4337003_-	nucleoside triphosphate pyrophosphatase YhdE	NA	NA	NA	NA
WP_000179409.1\|4337011_4337500_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_000802516.1\|4337499_4338603_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_000913396.1\|4338668_4339712_-	rod shape-determining protein MreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_001241456.1\|4340016_4341957_-	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_032208190.1\|4342108_4343083_+	oxidoreductase	NA	NA	NA	NA
WP_000354622.1\|4344815_4345286_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_000884639.1\|4345296_4346646_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_000787051.1\|4346737_4347784_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_000048610.1\|4347780_4348743_-	sugar kinase	NA	NA	NA	NA
WP_050439359.1\|4348739_4349753_-	ABC transporter permease	NA	NA	NA	NA
WP_000132908.1\|4349753_4351253_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.8e-18	26.8
WP_032208192.1\|4351313_4352204_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_060552893.1\|4352239_4353094_-	tagatose bisphosphate family class II aldolase	NA	NA	NA	NA
WP_000843960.1\|4353435_4354266_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.2e-09	27.0
WP_001446002.1\|4354297_4355233_+	sugar kinase	NA	NA	NA	NA
WP_001446003.1\|4355325_4355568_+	YhdT family protein	NA	NA	NA	NA
WP_032208194.1\|4355557_4357009_+	sodium/pantothenate symporter	NA	NA	NA	NA
WP_032208195.1\|4357020_4357902_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_001219652.1\|4358230_4359196_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_000462905.1\|4359221_4359518_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_032208196.1\|4359603_4360488_+	adenine-specific DNA-methyltransferase	M4QNN5	Ostreococcus_lucimarinus_virus	5.4e-24	30.2
WP_001355779.1\|4360571_4360751_+	DUF2556 family protein	NA	NA	NA	NA
WP_001129518.1\|4360753_4361416_-	multidrug efflux transporter transcriptional repressor AcrS	NA	NA	NA	NA
WP_000160337.1\|4361814_4362972_+	multidrug efflux RND transporter periplasmic adaptor subunit AcrE	NA	NA	NA	NA
WP_000825639.1\|4366339_4366561_+	membrane protein	NA	NA	NA	NA
WP_000738579.1\|4366991_4368017_+	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	2.4e-71	39.8
WP_032208197.1\|4368084_4369266_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_106888148.1\|4369322_4370535_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
WP_060552885.1\|4370661_4371480_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.0e-65	45.2

DBSCAN-SWA_18

4454544 : 4497721

Stx2-converting_phage(43.9%)

tRNA,integrase,terminase,head,transposase,capsid,holin,tail

attL 4456676:4456692|attR 4490455:4490471

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000918363.1\|4454544_4455960_-	replicative DNA helicase	O80281	Escherichia_phage	4.8e-200	78.3
WP_000235516.1\|4456042_4457026_+	quinone oxidoreductase	NA	NA	NA	NA
4456676:4456692	attL	NA	NA	NA	NA
WP_000891404.1\|4457191_4457434_-	envelope stress response protein PspG	NA	NA	NA	NA
WP_000543841.1\|4457567_4458605_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000332258.1\|4458693_4459791_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	8.1e-211	99.2
WP_047618033.1\|4459852_4460101_+	DinI-like family protein	A5LH55	Enterobacteria_phage	5.0e-36	96.3
WP_001143783.1\|4460261_4460903_-	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	1.3e-107	99.5
WP_072140863.1\|4460984_4461614_-	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.4e-79	93.5
WP_001118085.1\|4461681_4462263_-	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	2.7e-48	54.8
WP_047619066.1\|4462373_4462643_-\|tail	phage tail protein	Q687E5	Enterobacteria_phage	3.9e-42	94.4
WP_060552894.1\|4462644_4463958_-\|tail	phage tail protein	A0A0P0ZD68	Stx2-converting_phage	3.1e-76	98.2
WP_060552836.1\|4464022_4464622_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	2.9e-106	95.5
WP_060552895.1\|4464688_4468168_-	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	94.8
WP_122993104.1\|4468413_4469046_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.4e-105	93.8
WP_060552896.1\|4468991_4469735_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	3.3e-147	97.2
WP_001357740.1\|4469740_4470439_-\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	8.1e-132	98.7
WP_000807944.1\|4470438_4470780_-\|tail	phage tail protein	H6WZM2	Escherichia_phage	1.2e-61	98.2
WP_060552897.1\|4470772_4474015_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	92.6
WP_122993099.1\|4474062_4474272_-	DUF4035 domain-containing protein	A0A0P0ZED8	Stx2-converting_phage	3.3e-33	98.6
WP_001030063.1\|4474367_4474742_-\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001275477.1\|4474747_4475464_-\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	1.9e-128	99.2
WP_000133391.1\|4475530_4475875_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	9.4e-57	99.1
WP_000573374.1\|4475871_4476318_-	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_001007905.1\|4476314_4476665_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_047619202.1\|4476674_4477001_-\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	3.5e-53	99.1
WP_032274028.1\|4479041_4479263_-	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	9.9e-36	98.6
WP_047619207.1\|4479307_4481245_-\|capsid	phage major capsid protein	A0A0P0ZAJ3	Stx2-converting_phage	0.0e+00	96.7
WP_060552898.1\|4481308_4482970_-\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	98.7
WP_000958416.1\|4482966_4483530_-\|terminase	terminase small subunit	A0A0P0ZDD1	Stx2-converting_phage	4.7e-90	100.0
WP_024224188.1\|4483817_4484183_-	HNH endonuclease	A0A0P0ZCH0	Stx2-converting_phage	5.4e-63	97.5
WP_000095741.1\|4484224_4484425_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
WP_001283921.1\|4484717_4484975_-	hypothetical protein	A0A0P0ZBT1	Stx2-converting_phage	5.0e-39	100.0
WP_000839224.1\|4484971_4485469_-	DNA-binding protein	A0A0P0ZBU2	Stx2-converting_phage	3.6e-94	100.0
WP_001135289.1\|4486105_4486603_-	lysozyme RrrD	A0A0N7KZA0	Stx2-converting_phage	2.4e-90	97.0
WP_000411802.1\|4486602_4486809_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	2.4e-31	100.0
WP_060552899.1\|4487101_4488952_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.5
WP_060552900.1\|4489522_4489954_-	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	8.7e-68	98.6
WP_047619196.1\|4490143_4490353_-	hypothetical protein	K7PJU3	Enterobacteria_phage	2.7e-19	65.2
WP_047619199.1\|4490405_4490630_-	hypothetical protein	NA	NA	NA	NA
4490455:4490471	attR	NA	NA	NA	NA
WP_047619201.1\|4491043_4491532_-	antiterminator	H6WZJ5	Escherichia_phage	1.6e-89	99.4
WP_106888148.1\|4492250_4493463_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.2e-168	99.0
WP_000088311.1\|4493941_4494244_-\|transposase	transposase	NA	NA	NA	NA
WP_001014286.1\|4494364_4494553_+	hypothetical protein	G9L660	Escherichia_phage	2.2e-23	92.1
WP_047087994.1\|4494555_4495224_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	5.5e-61	49.6
WP_001061348.1\|4495223_4495796_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.2e-109	99.5
WP_001093921.1\|4495832_4496114_+	hypothetical protein	K7PGU0	Enterobacteria_phage	4.1e-42	95.7
WP_014640052.1\|4496374_4496761_-	hypothetical protein	NA	NA	NA	NA
WP_077249875.1\|4496790_4497336_-	SocA family protein	NA	NA	NA	NA
WP_071887528.1\|4497586_4497721_-\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013030

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013028

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP013029

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection