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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010535 Sediminicola sp. YIK13 isolate Sediment chromosome, complete genome 4 crisprs DEDDh,cas3,csa3 0 4 3 0

Results visualization

1. NZ_CP010535
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010535_1 222265-222519 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010535_2 1270908-1270985 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010535_3 1397589-1397842 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010535_4 1890510-1890702 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010535_4 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT 1890536-1890562 27 NZ_CP021149 Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence 28772-28798 3 0.889
NZ_CP010535_4 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT 1890536-1890562 27 NZ_CP022775 Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence 860770-860796 4 0.852
NZ_CP010535_4 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT 1890536-1890562 27 NZ_CP022762 Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence 760638-760664 4 0.852
NZ_CP010535_4 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT 1890536-1890562 27 NZ_CP014703 Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence 759753-759779 4 0.852
NZ_CP010535_4 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT 1890536-1890562 27 NZ_CP022771 Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence 760625-760651 4 0.852
NZ_CP010535_4 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT 1890536-1890562 27 NZ_CP022777 Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence 760644-760670 4 0.852
NZ_CP010535_4 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT 1890536-1890562 27 NZ_CP022799 Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence 760622-760648 4 0.852
NZ_CP010535_4 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT 1890536-1890562 27 NZ_CP022764 Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence 860842-860868 4 0.852
NZ_CP010535_4 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT 1890536-1890562 27 NZ_CP022797 Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence 860841-860867 4 0.852
NZ_CP010535_4 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT 1890536-1890562 27 NZ_CP022758 Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence 860826-860852 4 0.852
NZ_CP010535_4 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT 1890536-1890562 27 LR721753 Aliivibrio wodanis 06/09/160 plasmid 2 complete sequence 77184-77210 4 0.852
NZ_CP010535_3 3.9|1397674|28|NZ_CP010535|PILER-CR 1397674-1397701 28 MN180249 UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence 28740-28767 5 0.821
NZ_CP010535_3 3.8|1397789|31|NZ_CP010535|CRISPRCasFinder 1397789-1397819 31 MN319465 Klebsiella pneumoniae strain LDL3-2 plasmid pHNLDL3-2, complete sequence 9716-9746 8 0.742
NZ_CP010535_3 3.8|1397789|31|NZ_CP010535|CRISPRCasFinder 1397789-1397819 31 NZ_CP023980 Klebsiella variicola strain X39 plasmid pX39-3, complete sequence 10133-10163 8 0.742
NZ_CP010535_3 3.8|1397789|31|NZ_CP010535|CRISPRCasFinder 1397789-1397819 31 NZ_MK079571 Klebsiella pneumoniae strain 6BF16CTX plasmid pHNBF16, complete sequence 10409-10439 8 0.742
NZ_CP010535_3 3.6|1397672|34|NZ_CP010535|CRISPRCasFinder 1397672-1397705 34 MN180249 UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence 28738-28771 9 0.735

1. spacer 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT matches to NZ_CP021149 (Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence) position: , mismatch: 3, identity: 0.889

tacaaaaaaatcaaagcaagtcttaga	CRISPR spacer
tacaaaaaaatcaaagctaatcttagt	Protospacer
***************** *.****** 

2. spacer 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

tacaaaaaaatcaaagcaagtcttaga	CRISPR spacer
gacaaaaaaatcaaggcatgtcttata	Protospacer
 *************.*** ****** *

3. spacer 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

tacaaaaaaatcaaagcaagtcttaga	CRISPR spacer
gacaaaaaaatcaaggcatgtcttata	Protospacer
 *************.*** ****** *

4. spacer 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 4, identity: 0.852

tacaaaaaaatcaaagcaagtcttaga	CRISPR spacer
gacaaaaaaatcaaggcatgtcttata	Protospacer
 *************.*** ****** *

5. spacer 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

tacaaaaaaatcaaagcaagtcttaga	CRISPR spacer
gacaaaaaaatcaaggcatgtcttata	Protospacer
 *************.*** ****** *

6. spacer 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

tacaaaaaaatcaaagcaagtcttaga	CRISPR spacer
gacaaaaaaatcaaggcatgtcttata	Protospacer
 *************.*** ****** *

7. spacer 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

tacaaaaaaatcaaagcaagtcttaga	CRISPR spacer
gacaaaaaaatcaaggcatgtcttata	Protospacer
 *************.*** ****** *

8. spacer 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

tacaaaaaaatcaaagcaagtcttaga	CRISPR spacer
gacaaaaaaatcaaggcatgtcttata	Protospacer
 *************.*** ****** *

9. spacer 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

tacaaaaaaatcaaagcaagtcttaga	CRISPR spacer
gacaaaaaaatcaaggcatgtcttata	Protospacer
 *************.*** ****** *

10. spacer 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

tacaaaaaaatcaaagcaagtcttaga	CRISPR spacer
gacaaaaaaatcaaggcatgtcttata	Protospacer
 *************.*** ****** *

11. spacer 4.1|1890536|27|NZ_CP010535|CRISPRCasFinder,CRT matches to LR721753 (Aliivibrio wodanis 06/09/160 plasmid 2 complete sequence) position: , mismatch: 4, identity: 0.852

tacaaaaaaatcaaagcaagtcttaga	CRISPR spacer
ttcaaaataatcaaagtaagtcttaca	Protospacer
* ***** ********.******** *

12. spacer 3.9|1397674|28|NZ_CP010535|PILER-CR matches to MN180249 (UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence) position: , mismatch: 5, identity: 0.821

caaatagccggtaatgcaaacatgttat	CRISPR spacer
caaatagccggtactgcaaaaatgccaa	Protospacer
************* ****** ***..* 

13. spacer 3.8|1397789|31|NZ_CP010535|CRISPRCasFinder matches to MN319465 (Klebsiella pneumoniae strain LDL3-2 plasmid pHNLDL3-2, complete sequence) position: , mismatch: 8, identity: 0.742

tttcattgaatgtatcggaatcattaacagc	CRISPR spacer
taatgttgaatgtatcggattccttaacctc	Protospacer
*  ..************** ** *****  *

14. spacer 3.8|1397789|31|NZ_CP010535|CRISPRCasFinder matches to NZ_CP023980 (Klebsiella variicola strain X39 plasmid pX39-3, complete sequence) position: , mismatch: 8, identity: 0.742

tttcattgaatgtatcggaatcattaacagc	CRISPR spacer
taatgttgaatgtatcggattccttaacctc	Protospacer
*  ..************** ** *****  *

15. spacer 3.8|1397789|31|NZ_CP010535|CRISPRCasFinder matches to NZ_MK079571 (Klebsiella pneumoniae strain 6BF16CTX plasmid pHNBF16, complete sequence) position: , mismatch: 8, identity: 0.742

tttcattgaatgtatcggaatcattaacagc	CRISPR spacer
taatgttgaatgtatcggattccttaacctc	Protospacer
*  ..************** ** *****  *

16. spacer 3.6|1397672|34|NZ_CP010535|CRISPRCasFinder matches to MN180249 (UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence) position: , mismatch: 9, identity: 0.735

tccaaatagccggtaatgcaaacatgttatttgc	CRISPR spacer
gccaaatagccggtactgcaaaaatgccaagagt	Protospacer
 ************** ****** ***..*   *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 529930 : 539430 7 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_2 2677147 : 2683757 10 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 2877342 : 2886532 7 Bacillus_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage