CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011373	Nonlabens sp. MIC269 chromosome, complete genome	4 crisprs	cas3,PrimPol,DEDDh,cas3HD,WYL	2	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011373_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011373_1

218005-218259

Orphan

Consensus_repeat	Method
ACAGACGGTACGTTTACTTACACCGATGAAGATGGTGGTACTACCATTATTGAT	PILER-CR

2 spacers

DEDDh

The CRISPR arrays of NZ_CP011373_1

>merge|NZ_CP011373|1|218005-218259|PILER-CR
ACAGACGGTACTTTTACTTACACCGATGAAGATGGTGGTACTACCATTATTGATGTAACGAATCTGGAAACTCTTACCTCTATTGCGTTGAATGCTGATGATACCAATATCGATTACACCGATGAGGATGGTGTAGTTACTCAACTTGATCTTACAGCTTTAGTACAAAACTTGGAGACCTTAACCACTATCGTTGAAAACACAGACGGTACGTTTACTTACACCGATGAAGATGGTGGTACTACTGTTATTGAT

>NZ_CP011373|1|1|218005-218259|PILER-CR
ACAGACGGTACTTTTACTTACACCGATGAAGATGGTGGTACTACCATTATTGAT	GTAACGAATCTGGAAACTCTTACCTCTATTGCGTTGAATGCTGATGATACCAATATCG
ATTACACCGATGAGGATGGTGTAGTTACTCAACTTGATCTTACAGCTTTAGTAC	AAAACTTGGAGACCTTAACCACTATCGTTGAAAACACAGACGGTACGTTTACTTACACCGATGAAGAT
GGTGGTACTACTGTTATTGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011373.1\|WP_060522538.1\|236937_237321_-\|nucleoside-triphosphate-pyrophosphohydrolase-family-protein	unknown	unknown	gnl\|CDD\|212137
NZ_CP011373.1\|WP_060522537.1\|232133_236879_+\|T9SS-type-B-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275004
NZ_CP011373.1\|WP_060522534.1\|228113_229892_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|223953
NZ_CP011373.1\|WP_060522528.1\|211632_212961_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341035
NZ_CP011373.1\|WP_060522526.1\|209156_209738_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011373.1\|WP_060522539.1\|237664_239425_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP011373.1\|WP_060522540.1\|239424_240048_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP011373.1\|WP_060524910.1\|208675_209167_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP011373.1\|WP_060524912.1\|214418_217025_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP011373.1\|WP_060522527.1\|209721_210819_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011373.1\|WP_060522525.1\|205900_208354_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP011373.1\|WP_060522535.1\|229970_231290_+\|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236123
NZ_CP011373.1\|WP_060522533.1\|226904_228044_+\|gliding-motility-associated-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372639
NZ_CP011373.1\|WP_042280101.1\|210834_211560_+\|DUF2807-domain-containing-protein	unknown	unknown	gnl\|CDD\|371327
NZ_CP011373.1\|WP_060522532.1\|226262_226901_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011373.1\|WP_060522536.1\|231286_231997_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|381176
NZ_CP011373.1\|WP_060522524.1\|204895_205846_+\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NZ_CP011373.1\|WP_060522529.1\|213847_214249_-\|bacillithiol-system-redox-active-protein-YtxJ	unknown	unknown	gnl\|CDD\|274921
NZ_CP011373.1\|WP_157539188.1\|225538_226255_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011373.1\|WP_082586868.1\|213008_213833_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320690

Protein	Function_ID	Function_description	E-value
NZ_CP011373.1\|WP_060522538.1\|236937_237321_-\|nucleoside-triphosphate-pyrophosphohydrolase-family-protein	gnl\|CDD\|212137	cd11530, NTP-PPase_DR2231_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in Deinococcus radiodurans DR2231 protein and its bacterial homologs. This family includes a MazG-like NTP-PPase from Deinococcus radiodurans (DR2231), a putative NTP-PPase YP_001813558.1 from Exiguobacterium sibiricum and their bacterial homologs. DR2231 shows significant structural resemblance to MazG proteins, but is functionally related to the dimeric dUTPases. It can hydrolyze dUTP into dUMP. DR2231-like proteins contain a well conserved divalent ion binding motif, EXXEX(12-28)EXXD, which is the identity signature for the all-alpha-helical NTP-PPase superfamily. Unlike normal dimeric dUTPase-like proteins with a central four-helix bundle forming the active site, YP_001813558.1 displays a very unusual interlaced segment-swapped dimer. It potentially prefers to hydrolyze dCTPs or its derivatives. YP_001813558.1-like proteins contain a variant divalent ion binding motif, EXXEX(12-28)AXXD.	5.51336e-30
NZ_CP011373.1\|WP_060522537.1\|232133_236879_+\|T9SS-type-B-sorting-domain-containing-protein	gnl\|CDD\|275004	TIGR04131, conserved_hypothetical_protein, gliding motility-associated C-terminal domain. This model describes a protein homology domain unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility. Proteins with this domain frequently pair with members of family TIGR03519, whether one such pair or many occur in a genome. More than 30 members may occur in one genome.	1.2132e-48
NZ_CP011373.1\|WP_060522535.1\|229970_231290_+\|hypothetical-protein	gnl\|CDD\|236123	PRK07883, PRK07883, DEDD exonuclease domain-containing protein.	3.55052e-57
NZ_CP011373.1\|WP_060522528.1\|211632_212961_-\|MFS-transporter	gnl\|CDD\|341035	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis MFS-type transporter YxiO, and similar proteins including Listeria monocytogenes BtlA. The function of B. subtilis YxiO is still unknown, and L. monocytogenes BtlA is a putative secondary transporter involved in bile tolerance and general stress resistance. This family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.70376e-107
NZ_CP011373.1\|WP_060522539.1\|237664_239425_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.00594e-42
NZ_CP011373.1\|WP_060524910.1\|208675_209167_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	3.89648e-29
NZ_CP011373.1\|WP_060524912.1\|214418_217025_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP011373.1\|WP_060522529.1\|213847_214249_-\|bacillithiol-system-redox-active-protein-YtxJ	gnl\|CDD\|274921	TIGR04019, hypothetical_protein, bacillithiol system protein YtxJ. Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018), is described as thioredoxin reductase-like. [Unknown function, Enzymes of unknown specificity].	6.23025e-44
NZ_CP011373.1\|WP_060522525.1\|205900_208354_-\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP011373.1\|WP_060522533.1\|226904_228044_+\|gliding-motility-associated-C-terminal-domain-containing-protein	gnl\|CDD\|372639	pfam13585, CHU_C, C-terminal domain of CHU protein family. The function of this C-terminal domain is not known; there are several conserved tryptophan and asparagine residues.	1.58768e-29
NZ_CP011373.1\|WP_042280101.1\|210834_211560_+\|DUF2807-domain-containing-protein	gnl\|CDD\|371327	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain. This bacterial family of proteins shows structural similarity to other pectin lyase families. Although structures from this family align with acetyl-transferases, there is no conservation of catalytic residues found. It is likely that the function is one of cell-adhesion. In Structure 3jx8, it is interesting to note that the sequence of contains several well defined sequence repeats, centred around GSG motifs defining the tight beta turn between the two sheets of the super-helix; there are 8 such repeats in the C-terminal half of the protein, which could be grouped into 4 repeats of two. It seems likely that this family belongs to the superfamily of trimeric auto-transporter adhesins (TAAs), which are important virulence factors in Gram-negative pathogens. In the case of Parabacteroides distasonis, which is a component of the normal distal human gut microbiota, TAA-like complexes probably modulate adherence to the host (information derived from TOPSAN).	5.61501e-48
NZ_CP011373.1\|WP_060522540.1\|239424_240048_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.51018e-56
NZ_CP011373.1\|WP_060522536.1\|231286_231997_+\|SAM-dependent-methyltransferase	gnl\|CDD\|381176	cd11649, RsmI_like, uncharacterized subfamily of the tetrapyrrole methylase family similar to Ribosomal RNA small subunit methyltransferase I (RsmI). RsmI, also known as rRNA (cytidine-2'-O-)-methyltransferase, is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	9.83965e-140
NZ_CP011373.1\|WP_060522524.1\|204895_205846_+\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	1.86649e-74
NZ_CP011373.1\|WP_060522534.1\|228113_229892_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	0
NZ_CP011373.1\|WP_082586868.1\|213008_213833_-\|M48-family-metallopeptidase	gnl\|CDD\|320690	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	5.83045e-84

>NZ_CP011373.1|WP_060524912.1|214418_217025_+|ATP-dependent-chaperone-ClpB
MNLNKLTIKSQEAIQQAQQIAQEAQHPSILNEHLFKGIQLVDENVLPFIFQKLGVQLSIISQLIDKQLESLSTVTGGNLQFSRDTASTLNNAISIAGKMNDEYVSIEHLLLAIFEGSGTVSRILKDQGINAKDLKAAIESLRNGNRVTSSSAEETYQSLSKYAKNLNDLADKGKLDPVIGRDEEIRRILQILSRRTKNNPMLIGEPGVGKTAIAEGLAHRIVAGDVPENLKEKQIFSLDMGALIAGAKYKGEFEERLKAVVKEVTQSSGDIVLFIDEIHTLVGAGGGDGAMDAANILKPALARGELRAIGATTLDEYQKYFEKDKALERRFQKVTVDEPDTESAISILRGIKDKYEAHHKVQIKDDAIIGAVELSQRYITNRFLPDKAIDLIDESAARLRMEINSKPEELDVLDRKIMQLEIEIEAIKRENDEVKLKSLNSELSILKESRNELNAQWENEKSVIDAIQNLKSDIENYKLEAERAEREGNYGKVAELRYGKIKEAQEQLVKLQEQAALQDSSQALIQEEVTYDDIAEVVARWTGIPVTRMLQSEREKLLNLETELNKRVVGQHEAVEAVSDAVRRSRAGLQDQRKPVGSFLFLGTTGVGKTELAKALAEFLFNDENAMTRIDMSEYQERHSVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVILLDEIEKAHPDTFNILLQVLDEGRLTDNKGRVADFKNAIVIMTSNMGAHAIQDKFENANVIDEQLIDQTKNEVLQALKKQVRPEFINRIDDIVMFTPLTKAEIKEIVKLQLKSVTKLLAKQGITVDATDQAINLLAVKGFDPQYGARPVKRVIQKEIMNELSKKILSGEISTESIVLIDQFDDQLIFRNQEDQISV
>NZ_CP011373.1|WP_060522529.1|213847_214249_-|bacillithiol-system-redox-active-protein-YtxJ
MGIFDKFFKSQRDIAKDEITGIPWDSLESVDQLDNVIRNSRLKPKVIFKHSTRCGISRMVLKNFENNYVKNDVDVSYYYLDLLQFREVSNAIAQKLNVVHQSPQVIVLYQEEVLHNESHHGIDIKKVQEIVAN
>NZ_CP011373.1|WP_082586868.1|213008_213833_-|M48-family-metallopeptidase
MSWNRTIMLAGLFLLLSCKTNVFTGKKTLNFMSNSQLFPMAFAQYDDFLNQNNVVTGTSEAKMIEDVGNKIRIAAQRWLSALGEEAYLKDYKWEYNLVKDETVNAWCMPGGKIVFYTGILPICQGESGVAVVMGHEVAHALADHGAQRMSAAQVQALGAVGVAVGSQVAGANQQTQQILNQAYGLGSQLGGMLPFSRSHETEADKIGLYLSAIAGYDPYEAPELWKRMKAASGGQAPPEFLSTHPSNDSRIEFLNQLAPKAKEEAKKYGVTSFK
>NZ_CP011373.1|WP_060522528.1|211632_212961_-|MFS-transporter
MKPTLPKGHKKLIKAWAFYDWANSVYSLVIASAIFPIFYSYISTKAYEQGNVPDLLKSVTNENIIIITTAIAFLIVSIMSPILSGIADYSGKKKRFLQFFCYLGALSCCGLAWFSFDYLYVSLLLYLLALVGFWGSLVFYNSYLPDIAHPDQQDAASAKGFSYGYIGSVILLLLCLALIQGGFYPEEGILGLDAPRLSFVLTGLWWIGFAQYTYAYLPLGTKKDTSQVKNIFTNGFKELRKIWNQLDHLGQLKRFLGAFFIYSMAVQTVMLIATYFGTEEVLWPINEETGERDGTLGLIVSILLIQLIAIPGAWLASKLSRKHGNIKTLMVINILWVCICIYGYFVYTPIQFYVTAGFVGLVMGSIQSLSRSTYSKMIPENTIDTASFFSFYDVSEKIGIVIGMGIFALVNQYTGSMRESILFLVAFFTIGVVLLYRTGKIK
>NZ_CP011373.1|WP_042280101.1|210834_211560_+|DUF2807-domain-containing-protein
MKHITLLFIALLSVQLSQAQWWGKDKIKGNGEVISKTFEVGDYDKVNVRNSIDVTLVAGKEGSIEVKAESNIMEHIEIEVKGGRLKIGIEDGYNVSTRKGIYVTVPVQEIEALSLAGSGDIHSELVLKSSNMEISVAGSGNIEVETESRNLEVNVAGSGDIILKGRTENLDASVAGSGDIEGFGLRANNIDASIAGSGDISVYCNGGTINASIAGSGDIVYDGKSSKVKTSIIGSGDVEKR
>NZ_CP011373.1|WP_060522527.1|209721_210819_+|hypothetical-protein
MKTLFNIVFLLMVPVVALAGTDKGKYTKTKTLNKSFPVKKTCMLQVENSFGNVSMTTWDKAQIDIKVVVEVSGDDEDDVVEKLREINVDFDTSSSRVIARTDADFSNRNQSSSIWNALFSSNSNRVTNMKIDYIIKLPKTADIDIANDYGNVEIDDLFGHAKIQCDFGRIDIGNLHHEDNLLKFDYSKNCHFDYIKSATIRADFSGFELEKAYKIEFSGDYTTGKFGEVDQLNFRNDFTTVQIESVRMVTGRGDYSTVKIDNVSEYVNLNTEFGSARIRELGRNFKEAILRAEYTKVDVGVNKDASFTFDIDTEFAGINLSNDIITTKSNKNMTEKSKAGHYGSSSASSTININSSFGGVSLKIN
>NZ_CP011373.1|WP_060522526.1|209156_209738_+|hypothetical-protein
MKDDMKSWFQQQDFDTTPLPNGHREAFFEKLEKLCDEETKVIPLPIDKDGDKDNTFSLSKILKWSAAATLAVLLGIAGLKMTSTDTTVTEVSPEIAQTQTFFSSTIKNELEQLNTLRTAENAVIIEEALAAIEKLELQYEDIKQDYRINKDSKVVIAAMIENFQNRIQVLEIAREQIKQLEELKLEKENENII
>NZ_CP011373.1|WP_060524910.1|208675_209167_+|RNA-polymerase-sigma-factor
MKLYDQYANGMYHVALRIVQQTDLAQDIMQESMISAFRKMNQWNRESTYGSWLKRIVINNSLSHLRKAGKMPTVDYEEVSYEMEQQPDDTGIDMEQAGMTARKVLEIMSKLKENYRQVLTLSLIEGMDNEEICEILGLSNGQCRTMISRAKQSLRNKIEEYEG
>NZ_CP011373.1|WP_060522525.1|205900_208354_-|endopeptidase-La
MFKPKKFNIDNLSLQEFDQDAEFIPLLSQEDEEEMDRESIPEVLPILPLRNMVLFPGVVIPITAGRDKSIQLLQDANRNNNPIGVVAQKDEEIEDPTFEDLHKTGVVARILKVFKMPDGNTTVIIQGKKRFEIDTLVKTEPYMEASTRPTGDTRPEKGDKEFEAIIDKIKESSLEIIKGSPNIPSEATFAIKNIESDSFLVNFVSSNMNLKVGEKQQLLEMDDLKERALETLRYMNIELQKLELKNDIQSKVQSDINKQQREYFLHQQMKTIQEELGGGVSSHQEIDDMRQRAKKKKWDDKVKEHFDKELAKMQRMNPQVAEYSIQRNYLDLFLELPWNEFSKDNFDLKRAMKILDRDHYGLDDVKKRIIEYLAVLKLRNDMKSPILCLYGPPGVGKTSLGKSIAEALGREYVRMSLGGLRDEAEIRGHRKTYIGAMPGRIIQSIKKAKTSNPVFVLDEIDKLSSSHNGDPSSAMLEVLDPEQNSEFYDNFLEMGYDLSKVMFIATCNSLNTIQPALRDRMEIINVTGYTIEEKVEIGKQHLLPKQLKEHGLNKEHLKLGKPQIEKIVEGYTRESGVRTLDKQIAKMVRYAAKSIAMEDDYDIKVSNDTIIEVLGSPKLLRDKYENNDVAGVVTGLAWTRVGGDILFIESILSKGKGQLSITGNLGKVMKESATIAMEYIKSNADQLGINPEVFEKYNVHIHVPEGATPKDGPSAGITMLTSLVSLFTQRKVKKSIAMTGEITLRGKVLPVGGIKEKILAAKRAKIKEILLCEQNRRDIEEIKEEYLKGLTFHYVSDMSQVLELAITKQKVKNAKKL
>NZ_CP011373.1|WP_060522524.1|204895_205846_+|isopenicillin-N-synthase-family-oxygenase
MTNIPSVDLADFLSDDPVRKKKFITEIGNAYEEIGFVSLKNHFLDDELTEKLYNEVEKFFKLPTDVKKGYEREDLGGQRGYVSFGKEHAKGKKEGDLKEFWHFGQEPAADANLTEEYPDNVQVKELPHFNEVGMQAYRMLEKTGIYVLRALALYIGKQENYFDHWASNGNSILRPIHYPPITEEPDNAVRAGAHGDINLITLLMGASAPGLQVKHKDGRWIDAIAGEDELVINVGDMLERHTNNKLRSTIHRVVNPPRELWHTSRYSIPFFMHPRSEMPLDCLEECIDDNNPKQYDDITAGEFLHQRLVEIGLIKK
>NZ_CP011373.1|WP_157539188.1|225538_226255_+|hypothetical-protein
MKNFFFIIVLLMLLFSFIQPAINPDSLMRISNLTTAEINSIVGVQEGSIVYDTDRNRMLEYTNTGWSEMLVDSNVYLGSFTINSSGSITISDVPFQPSQVSFVAHANVESNNIAADNGVGNNARGISNSYGTSNGFARNNGGSIVQQSIYVGGHGNSINDISRYSSSSNCVGIRYGDQNGSNLGIIEASLTNFTTNGFTVNATYTNGEITVNNANPVLNVQPADVNNEAIVVLFTAYK
>NZ_CP011373.1|WP_060522532.1|226262_226901_+|hypothetical-protein
MKLFLSSLIFTVWFAFSQAQIDPNSILGIPTLTTTEINSISNPNEGSIVYNTTDQSLYLRNATTWKKLTVDESKTVILNRNGGSLPTAINTFYDLPLTNSHVTTINNDYYTISGTSEITILQQGNYLISGELSTTNMPAGDNKYILAVFINGSRRGYLSRGFASVPSRDFWGTTGTIMFSLNANDVINIRYVLNVNGATLNANFSNIGITKI
>NZ_CP011373.1|WP_060522533.1|226904_228044_+|gliding-motility-associated-C-terminal-domain-containing-protein
MKNYLFFTLLVVYAFAKAQTALHNYGNLKIHPTGQIGFHTDVINDGISNDNDGLAGFYNDNRMLTFSGTNQMNFENVELEVDDDLSLLTSVGITGELDFISGRFITPRINPNIRLKFLNNNFYFNSNDNKHIDGFNEFSGSIDFTFPIGDEFELKPLGISNYTEKQFVAAYFKEDPNTPTTFVSGFDTSAFEPSLDIVSTTEFWYLDSTGTADVTLHWTSSSNVSSLVNNLSQLRIAAWNATTNKWDNLGNDSFTGTVNEGTITTKINATQEYTIYTLASILENGNDILVYNGITPDGDGINDTLIIRGLEDIPDNELIIYNRWGVAVYQKENYDNSFSGISEGRVTTSQDEKLPEGTYFYVLKIGNKENLAGYIYINR
>NZ_CP011373.1|WP_060522534.1|228113_229892_+|long-chain-fatty-acid--CoA-ligase
MQIKRLFDFPYYQLKNYPREDALVTKQNGIWEKTSTQEYINQACALSRGLMRLGLQKDDKVGIISTNNRTEWNITDIGVMQTGAQDVPIYPTISEEDYAYVLNHSEAKFVFVSDQEVYDKVQAIRNKVPSLQEVYSYNDIKGCKSWREVLELGKDDSNQKELEDRMAAIKEDDLATLIYTSGTTGRPKGVMLSHKNISSNAIFSRDRLPIVEGKGKALSFLPVCHIYERMLLYMYTYVGGGIYFAESIEAISDNLKEVQPDVMSAVPRLLEKVYDKIIAKGTDLTGIKKKLFFWAVELGLKWEPYGRNGWWYEQKLKLARKLIFSKWQEALGGNLQAIASGSAALQPRLARVFNAAGVPVMEGYGLTETSPVIAVNDMRNNGFKIGTVGKPLKETDVKIAEDGEIIINGPQRMMGYYKDPEKTAEAIDKDGYFHTGDIGEIDQEGFLRITDRKKEMFKTSGGKYVAPQVIENVLKQSRFVEQIMVIGEGEKMPAAFIQPNFEFLEEWAERKELKYNSYEELCALDRVIDRYQREVDHYNEQFGKWERIKRFELTPEVWSIDNEQLTPTLKLKRRNIKARYQDLYDKIYGPKI
>NZ_CP011373.1|WP_060522535.1|229970_231290_+|hypothetical-protein
MYAILDIETTGGNYGDEGITEIAIYKFDGHEIVDQFASLVNPEKPIQPFVVQLTGINNKMLIKAPKFFEVAKRIIEITEGCVIVAHNAEFDYRMLVQEFSSLGYDYQRESICTVQVAQELLPDEESYNLGKLCKSLGIPIPSRHRATGDAAATVKLFKILLEKDTGKKIINSFQKQLTQKSVKKGLQEFLDSVPATTGVLYLFNEKNQSLYISKSRNMKKKLRQVVTSQAKWAANLTKKIHRVSYEQTGSLLIAEIKEYIEIKAQRPKFVRKRKAIHLKSVLNYKDNRIQINKIALPSRDGLIFFRSDKKAINFLKWLFSNSCQSPDDYIGNNELLQQLADIEHLKNGKSIDELLEEFNFMNGSYILKLRGRTATEHAVLKISNNKIQGYAYIDLKYQVTNSEILNKLLIPLNDDKGIFLNMVHQYIKTRKNIYKYKLV
>NZ_CP011373.1|WP_060522536.1|231286_231997_+|SAM-dependent-methyltransferase
MMEKGRLFLIPVTLGEINPLEVLPISVKKVIEVVDHYIVENEKSARRFIKSIHPGKSQPSLQLSTLNKFTEPSELPTFLKPCHEGTHVGLMSEAGVPGVADPGSQVVAMAHEQGIRVQPLVGPSSILMAMMSSGMNGQSFAFNGYLPIDKHDRRKRIKQLESLSLRENQSQALIETPYRNNKLIEELLTTLHPETRLCIACDITLPTEYIRTFSVKKWKQNIPDIHKRPALFIIHA
>NZ_CP011373.1|WP_060522537.1|232133_236879_+|T9SS-type-B-sorting-domain-containing-protein
MKKLLLFLILLTPLSMYSQGEASWWFFGQNASLDFNSGAPLPGPTGSLNTFEGCSTISDECGNLLMYSDGTTVWDRNGNAMPNGTGLSGNSSSAQSAIIIPDLGSTVRYFVITISSGAGLRYSIVDMSLNSGLGDVVAGRRDLLIQASTQEKVTAAYNDSQTFYWILTFDGNGTYSAYPAGGGIILAAQGVDSPLPTTAMSDARGYIRLSPDASKVSNTSIGNAGTAYLADFDNATGVVSNPIPLTNTTGTTSRYYGTEFSPNSQLVYLNGNTQDTGNGCGTGNTREILQYEINGGAMWNSRPNVIPTNATNNSGRGALQLGIDGMIYHARTCQPWLGVIRSPNLLGGAAGYVDDGVALATPMQSREGLPPFITSFFEPSFLAQDANNGSGGGNNGNQTDYCDGSTIQFNSSASGLCATATVLWDFGDGNTSTQLNPTHLYAGPGVYTVSLTVTSGFYTATATQVINVYENPIINPVPVQRLCDSDGSGDEPLDLVTVIDPFIYGTQSTTDFTISYFLTQNNADNNVGSINSPYLFPLGTTTVYARISNNTNPPASIDCFVTDTFDVIVSQAGGITLSPAVLNLCDADNDGFETFDLTTSDSQVFPGGSAGGAQVTYHPTSNDANNGTNAITNFTSYVNATPTSEVVYVRAVTDPGTACQGVDTIDITLNVYDSKVANPVPDQRFCDNGNDGTEDILLTDFDATVLGSQNASDSAITYHLNQSDADTNNSPQTSPFALTGNTTIYVRIENTNFTDCYDTTSINLFLDTQAVANTVTEFRLCDDISNNGSEVFDLNTKISEVLGSQTAADFNVEFFVSQADADLGSAGGATPVSLNYSSAGQTMYVRIENINNTNCFDTTTFDLIVDELPLANTPATLDLCDDTSNDGVENVDLTVQFDNDVLNGQTSTNFVVTYHANQTDADNDSNPLTSPYQVSLGTTNLVVRVDNLNNESCAATAPITIILNEQAIANSVADYRLCDDVSNDGQETFDLSTLDSQILDTQNAADFTIEYFANQSDADLGTVGGATALPTMYTSGTSTIIGRIQTNSNTSCYDTVSINLFVDTTPQAGVQADIIVCDDPSNDGVEDVDLSQFDSTILTGQSASDFVVSYHASQADADNDASPLSSPYSVSASTPRIFVRIDNVNNNSCYTTTSFNFVIAPTPTANAVNDMVQCDDPTNDDTESFDLSMADSQVLGNQNPSDFTITYHPTQNDADNNSNALPVIYNNVTNPETVYVRIEAVANPVCADFTSFTLTVSEQPTAGFAPDIVGCDDPSNDGFEDFDFSQQDGAVLNGQSASDFEITYHLNQADADSNSNALPVPYTNTSRAQTIYARIQNRNNPDCYDVSFFEIEVFERPDINNQGPITICAGINEVLDAGPGYSSYLWSTGETTQTITVNSQDDYTVTVTNSNGCDTTATIRVIESDIATIERIAVNQFEVNTNTLEAIVTGPGDYEFSLDNFVYQDSPRFNNLVPGFYTVYVKDKNGCGTVSQDAVIIGGPPYFTPNSDGYHDTWQVTAIETVPDANIYIFDRYGKLLKQISPTGAGWDGTYNGNPMPSSDYWYMVELSDGRSFRGHFALKR
>NZ_CP011373.1|WP_060522538.1|236937_237321_-|nucleoside-triphosphate-pyrophosphohydrolase-family-protein
MKKQLESVYKFHDSFGLGIKNSPIADISSRRIKLRYELMKEENEEYLEAAQNNDVVEVADALGDMLYILCGTIIEHGMQDIITNVFDEIQSSNMSKLGSDGKPIYREDGKVLKGPNYFKPNIKQFLK
>NZ_CP011373.1|WP_060522539.1|237664_239425_+|sensor-histidine-kinase
MRNFITSILFLTISFWTYSQEIPLDSIISYIDQGKAVNVEQQLKLRDFEKLNDSSKVKFLLIKGMVFFQEDKFVESYKALLKAKEYKENVSLRNIYTVNHYLQKVANTVSEFSTSAEALDEENCKIAYELNQPKLIIDCIYNQCYKSIVKEDFIDALQLSYQMKSIAVKAKLEREKINIENIIGTIHYYNNDFDSTLFYFKKNIEYYEKAKDSFAMLERYNNMAKVQLELERNAEALKSINISELYLKNYKNVGMDALIKRNKAEILYANKKYKEAAEYYQSYLILKDSVGEESQAGTIADLQTKYATAEKEKENALLKAGKLKAENSLYVLSIVLGIIIAGAGFFILYAYKQKKVLEARELAEKEKAEKLRKDQELASIDAMIAGQEQERKKIASDLHDDLGSSLTTVKMYIESVQSNVKEESAQTLLTNALNIIGETYSKVRTISHTQNSRVLGESGLVDTLEDLCDKINQAGQTNVEVVSNELSTPISNSKELNLFRIIQELLNNIIKHAQANNASINITSYQDKLDLIIEDDGIGFNYDPNYKTDGIGLHSIARKIENMNGSFEVDSAPGKGSTIMIEIPLK
>NZ_CP011373.1|WP_060522540.1|239424_240048_+|response-regulator-transcription-factor
MIHIAIAEDHVSLSDGLKLFLEQDNDIKVMFTVPNGKEMLLKLEHMRPEVILTDISMPEMNGVELCQRIKKEYPRTKVLALSMFENEGAVRDMIDAGVDGYMLKSSPLTELKKAIFTIADGKNYYDNELKFNIKDLKLFSSRKQLLSRSEKEILKLVAQGKTNQEIADFRGTAVSTIIKHRKNMMQKLDLHGKGELLQYAIQEHGHY

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Crispr_ID: NZ_CP011373_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011373_2

1748060-1748838

Orphan

Consensus_repeat	Method
AATCAGCCTTTAGATAATTGGAATGTATCAAATGT	CRISPRCasFinder

10 spacers

The CRISPR arrays of NZ_CP011373_2

>merge|NZ_CP011373|2|1748060-1748838|CRISPRCasFinder
AATCAGTCACTTAATAATTGGAGTGTTTCAAATGTTACTGATATGAGCTTTATTTTTTCTCTGTCTCCTTTCAATCAGCCTTTAGATAATTGGGATGTTTCTAACGTCACCGATATGACCGATATGTTTTCAAGTGCTTCTAGCTTTAATCAACCTCTTAATAATTGGAACGTTGCTAATGTTACTAACATGCAACAGATGTTTGCTGGTGCTTTATCTTTTGATCAACCTTTAAATAACTGGAACGTATCAAATGTTACAAATATGCGTTTGATGTTCTCAGAAACTCCTTTCAATCAGCCTTTAGATAATTGGAATGTATCAAATGTTTCAGACTTGAGCCGTATGTTTCGTGAGGCAAGTAATTTTAATCAGCCTTTAGATAATTGGGATGTATCAAATGTCACAAATATGAGTTTTATGTTTCAACGTGCAGTCAGTTTTAATCAAACCCTTGATAATTGGAACGTTTCTAATGTTCAAAATATGTCAGGTTTATTTAATAGTGCTGGTATTTTCAATCAAGCACTTAGTAATTGGGACGTTTCTAATGTTACTGACATGAGTAAAATGTTTGAAAACGCTCCTTTATTTAATCAACCTTTGGACAACTGGGATGTCTCAAATGTTACTGATATGTCCAATATGTTCAGTAAAACAGATTCCTTTAATCAGCCGTTAAATAATTGGAATGTCTCAAATGTTACTGACATGTCCTCTATGTTTAGAGAGGCAATTGCATTTAATCAGCCTCTAGATAATTGGGATGTTGCTGAGGT

>NZ_CP011373|2|1|1748060-1748838|CRISPRCasFinder
AATCAGTCACTTAATAATTGGAGTGTTTCAAATGT	TACTGATATGAGCTTTATTTTTTCTCTGTCTCCTTTC
AATCAGCCTTTAGATAATTGGGATGTTTCTAACGT	CACCGATATGACCGATATGTTTTCAAGTGCTTCTAGCTTT
AATCAACCTCTTAATAATTGGAACGTTGCTAATGT	TACTAACATGCAACAGATGTTTGCTGGTGCTTTATCTTTT
GATCAACCTTTAAATAACTGGAACGTATCAAATGT	TACAAATATGCGTTTGATGTTCTCAGAAACTCCTTTC
AATCAGCCTTTAGATAATTGGAATGTATCAAATGT	TTCAGACTTGAGCCGTATGTTTCGTGAGGCAAGTAATTTT
AATCAGCCTTTAGATAATTGGGATGTATCAAATGT	CACAAATATGAGTTTTATGTTTCAACGTGCAGTCAGTTTT
AATCAAACCCTTGATAATTGGAACGTTTCTAATGT	TCAAAATATGTCAGGTTTATTTAATAGTGCTGGTATTTTC
AATCAAGCACTTAGTAATTGGGACGTTTCTAATGT	TACTGACATGAGTAAAATGTTTGAAAACGCTCCTTTATTT
AATCAACCTTTGGACAACTGGGATGTCTCAAATGT	TACTGATATGTCCAATATGTTCAGTAAAACAGATTCCTTT
AATCAGCCGTTAAATAATTGGAATGTCTCAAATGT	TACTGACATGTCCTCTATGTTTAGAGAGGCAATTGCATTT
AATCAGCCTCTAGATAATTGGGATGTTGCTGAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011373.1\|WP_060523584.1\|1751975_1753472_+\|GH3-auxin-responsive-promoter-family-protein	unknown	unknown	gnl\|CDD\|377019
NZ_CP011373.1\|WP_060523586.1\|1754223_1754580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011373.1\|WP_060523578.1\|1744489_1745113_+\|DUF4230-domain-containing-protein	unknown	unknown	gnl\|CDD\|379417
NZ_CP011373.1\|WP_172792949.1\|1737770_1740572_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225743
NZ_CP011373.1\|WP_060523583.1\|1751094_1751976_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP011373.1\|WP_060525053.1\|1743739_1744480_+\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|377240
NZ_CP011373.1\|WP_157539253.1\|1740534_1741497_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NZ_CP011373.1\|WP_060523590.1\|1760207_1761101_+\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|260120
NZ_CP011373.1\|WP_060525051.1\|1742957_1743677_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011373.1\|WP_042277010.1\|1757577_1758324_+\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|181038
NZ_CP011373.1\|WP_060523585.1\|1753473_1754142_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|381175
NZ_CP011373.1\|WP_060523574.1\|1733563_1736473_+\|phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|376527
NZ_CP011373.1\|WP_060523588.1\|1755518_1757522_+\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236054
NZ_CP011373.1\|WP_060523575.1\|1736472_1737774_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NZ_CP011373.1\|WP_060523577.1\|1741650_1742853_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|223708
NZ_CP011373.1\|WP_060523582.1\|1750629_1750992_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011373.1\|WP_060523579.1\|1745115_1746213_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224907
NZ_CP011373.1\|WP_060523589.1\|1759578_1760046_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011373.1\|WP_060523587.1\|1754847_1755516_+\|succinate-dehydrogenase-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|239578
NZ_CP011373.1\|WP_060523580.1\|1746223_1747360_-\|SPFH-domain-containing-protein	unknown	unknown	gnl\|CDD\|372597

Protein	Function_ID	Function_description	E-value
NZ_CP011373.1\|WP_060523584.1\|1751975_1753472_+\|GH3-auxin-responsive-promoter-family-protein	gnl\|CDD\|377019	pfam03321, GH3, GH3 auxin-responsive promoter.	3.05897e-98
NZ_CP011373.1\|WP_060523578.1\|1744489_1745113_+\|DUF4230-domain-containing-protein	gnl\|CDD\|379417	pfam14014, DUF4230, Protein of unknown function (DUF4230). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 203 and 228 amino acids in length.	1.95776e-29
NZ_CP011373.1\|WP_172792949.1\|1737770_1740572_-\|hypothetical-protein	gnl\|CDD\|225743	COG3202, COG3202, ATP/ADP translocase [Energy production and conversion].	1.48115e-18
NZ_CP011373.1\|WP_042277010.1\|1757577_1758324_+\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl\|CDD\|181038	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated.	0
NZ_CP011373.1\|WP_157539253.1\|1740534_1741497_-\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.11392e-12
NZ_CP011373.1\|WP_060525053.1\|1743739_1744480_+\|cyclase-family-protein	gnl\|CDD\|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	8.41648e-16
NZ_CP011373.1\|WP_060523583.1\|1751094_1751976_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	3.49275e-42
NZ_CP011373.1\|WP_060523590.1\|1760207_1761101_+\|protoheme-IX-farnesyltransferase	gnl\|CDD\|260120	cd13957, PT_UbiA_Cox10, Protoheme IX farnesyltransferase. Protoheme IX farnesyltransferase (also called heme O synthase, heme A:farnesyltransferase, cytochrome c oxidase subunit X [Cox10]) converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of the heme B porphyrin ring with a hydroxyethyl farnesyl side group. It is localized at the mitochondrial inner membrane. Eukaryotic Cox10 is important for the maturation of the heme A prosthetic group of cytochrome c oxidase (COX), the terminal component of the mitochondrial respiratory chain, that catalyzes the electron transfer from reduced cytochrome c to oxygen. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.	2.11828e-97
NZ_CP011373.1\|WP_060523585.1\|1753473_1754142_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|381175	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase. RsmI is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	9.14953e-124
NZ_CP011373.1\|WP_060523574.1\|1733563_1736473_+\|phosphoenolpyruvate-synthase	gnl\|CDD\|376527	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain. This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP).	1.08807e-15
NZ_CP011373.1\|WP_060523588.1\|1755518_1757522_+\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236054	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit.	0
NZ_CP011373.1\|WP_060523575.1\|1736472_1737774_+\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	0.000386172
NZ_CP011373.1\|WP_060523577.1\|1741650_1742853_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|223708	COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism].	3.59861e-109
NZ_CP011373.1\|WP_060523579.1\|1745115_1746213_-\|hypothetical-protein	gnl\|CDD\|224907	COG1996, RPC10, DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription].	0.00751727
NZ_CP011373.1\|WP_060523587.1\|1754847_1755516_+\|succinate-dehydrogenase-cytochrome-b-subunit	gnl\|CDD\|239578	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. C. glutamicum SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The transmembrane subunit of members of this subfamily is also called Sdh cytochrome b558 subunit based on the Bacillus subtilis protein. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron acceptor (quinone). The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes. Proteins in this subfamily from G. metallireducens and G. sulfurreducens are bifunctional enzymes with SQR and QFR activities.	5.50456e-62
NZ_CP011373.1\|WP_060523580.1\|1746223_1747360_-\|SPFH-domain-containing-protein	gnl\|CDD\|372597	pfam13421, Band_7_1, SPFH domain-Band 7 family.	1.22847e-122

>NZ_CP011373.1|WP_060523580.1|1746223_1747360_-|SPFH-domain-containing-protein
MSIFDKIKEKLSHEFIDIVEWLDYTDDTIAHRFERYQNEIKNGAKLIVREGQAAVFVNEGQLADVFTPGTYDLTTQNLPILSTLKGWKYGFNSPFKAEVYFVNTHLFTDEKWGTKNPITLSDDRFGLVEIRAFGTYAFKINDPGKFIIDIVGTDNNFTNFEINEHLKSLIATRFTDTVGEANLPIELYAANTSELSETCKEVMQPEFLGVGISLERFYIENVSMPEDLKKEIFEYSRIDKLDLDKLTKFKTAKAIEAAAANEGGTAGAGMGMGMGFVLAQQMGGMMNPTAGTTAAPQTQSAPVAPPPLPQAVQYFYALNGAQAGPVPFEQLRALFAGRTVNKETLIWRAGLDGWKALKDIDELKVFLGGTTPPPLPNS
>NZ_CP011373.1|WP_060523579.1|1745115_1746213_-|hypothetical-protein
MSESIKSVSKRKKSCVNCGAELTYEPGTDLITCDYCGHKEQIEHKEQPFQEIELLPYLEQLGSQSHSTELSLLDCKSCGATQHVEESYKTLQCVYCASPLQIDELYREEWIQPGALIPFQINQGKAHLIFKNWVNKLWWAPNNLKKASLSPENTKGLYLPYWTFDAQLQAGYTGMRGDYYYVTKTVGSGENKRQVRERRTDWSPAAGNVSGFIDDTLVKATKKQQSQIPEQVARWDLKQLTNFDSRFLAGYVTEKYTISLKEGHIVSNKRAEEICRNWIRRDIGGDTQKISSVNMSLDDETFKHILLPVYISSYYYNSKQYHFYVNGQTGKIHGSRPYSFWKIFFAVVCALIILTVIIVVSSQVQ
>NZ_CP011373.1|WP_060523578.1|1744489_1745113_+|DUF4230-domain-containing-protein
MEYLFIGLAAGAVISFFIFKFLVKGNHSKNNTKEQSVVLMEKIRTVCKFITVEGDFAEIYHYENVKEKLMTLLLGKKKAIVLVNAKAHIGYDLTKIKMHSDPKRKTITLTNFPQPQVMSIETDLNYYDKKEGWANYFSSSDLTEISRNAKQHIIDKIPESGLLEQAQQEALQAIQMMETLAQTIGWTLDYNALLLEEPEKQVKILNK
>NZ_CP011373.1|WP_060525053.1|1743739_1744480_+|cyclase-family-protein
MTATIHIESKNYKIDLDKPIDISIPVQHQSGVGAWYIDQPTIKHVEVDGYVGKVELGGSTNFNDVSFNPHSHVTHTECVGHITKQVYSVNQALNRTFFKAQVISVRPEEFEDDLVITLEKFTHIADDVEAIVIRTLPNSGDKKTRNYSHTNPPYLLEEVAVRFRESGIKHLLIDLPSVDKEKDEGALLAHKAFFNYQGDYRMDATITEFIYVPDEVSDGNYLLDLQIAPIENDAAPSRPILYKIKS
>NZ_CP011373.1|WP_060525051.1|1742957_1743677_+|hypothetical-protein
MLQQASSNTLTVRDDVVYIDENNNVLSNEEKESRNEDLMYAKWLVNEQNELVMVQLQSRENALKWLSDRPVIKDNSQIDCNQLDMLLERIYRRDQENRSSQAILPKVDSLNLVAIEAVIDKCGMPTIENSGEMGPSAVWLVIQHASADKRKKYFPMLLEASKKGDLDRQDIALMQDRMLMDAGKPQLYGSQVTVNESGEYMLYDLRDPETVDQRRAVMNLMPLKEYLHFFEIEFNVPQK
>NZ_CP011373.1|WP_060523577.1|1741650_1742853_+|radical-SAM-family-heme-chaperone-HemW
MSGIYIHIPFCKQACHYCDFHFVTSTKYKTRMIQALCDELRFRAKRPNIESNILNTDINNSSVYLDDDAVVETIYFGGGTPSVLQTEEINKIIDTVYQNFNVSSNPEITLEANPDDLDDLTIKKLEKSLVNRLSIGVQSFHEKDLKLMNRAHNAQQAEECILKAQQYFENLSIDLIYGIPGLTNEEWRDNIYRAIELKIPHISSYALTVEDNTALKSYIEKGLIPQVDDEKAHEHFNILIDAMQLHGYKNYEFSNFGKPGFFSRNNTAYWTGKPYLGIGPSAHSFDGEKRGWNINNNLKFMKAIENGNSPMEIEKLTKVDRYNEYIMTGLRTIYGVSLEKIETEYGLEFKTYLLKQAQEYLKDHLLYLDGDTLLVTRKGKFLSDGIASELFMLNLGDYKE
>NZ_CP011373.1|WP_157539253.1|1740534_1741497_-|serine-hydrolase
MNIYMIKPLFLLLFLLGSLTTHAKPPLVNVEDIHQDVEFYQNAELQLKLQEQLNANPNWKNLIDKKLLTISLVDLSDDEIRYAGINDDHMMYAASMPKIAVLYAAMDAIENGELAYTELVKQDMWLMISKSNNAASTRMIDRVGFQKIEDVMCNPENPFYDKFHDGGLWVGKRYAAQGKRNPDPIKGLSHAATTSSVAKMYFQLATGQLINTDRSNQMLGFLKDPSLHHKFVNTLDQIAPTADVYRKSGSWRNWHCDSALVWDETRGKYYIMVAMVQSPNGEKIIRNLVRPLENALEKSPNLPINPSKGVTIEPALNQSI
>NZ_CP011373.1|WP_172792949.1|1737770_1740572_-|hypothetical-protein
MLPLSQLLTRAFDIKKNELSIAIWMQLYLFLLICALLVVKPTVNALFLSVAGRDNLSIAFVITALVAVIVSYTYNRLLVTLPLHEITKNSLWFFGAVFVLIGAVVVFDFENIFLSYVFYIFIGIYAILATSQFWVTANIVFNVSQAKRLFGFVGAGGIAGGIAGGYLTSITAPYINNGFLIATAGFMILACVFIYKKVRSLRIVNLKNIKLQKQERVSKKKSLSLIIKNSHLSYLAGVIGLGVVVAKLVDYQFSYLSSVSIPEPDDLASFFGFWFSTFNIISLLIQLFLTKKFLENLNISSNLLVLPTMIVICTSLLFIFPELWVVVLLKGFDGSLKQSLYKSSVELLALPVPSEIKNKTKTFIDVVVDSTATGIAGLLIILIIKGLELPTYTINFIIVIATLFWMYMILKVRSTYLSTFKSSISIKTGLFDKRSNLKVIRENIKVIIDNGNKLDIIEILKKVPQVAHHSLKDPLLKLLDHENDQVKIAAISQLNHVFKEPVYRVHNFIYSKNSELVFAALQYLITQDHIAPQFFENYLDDDDDHIASTALLALAQYASRDSHLGEKYNLHLRIKLFLDEIDENIKEVDLKEKSRLIEAIGYAKYTNYQTIIKTNLNNRNEVIKTSCIKSAGHTKDRYFLQDLFSLLEQPRYRKVASEALVEYGNSLLHFLKVKHSRGTLTKSLLLELPMLLGAINTKKSYKFLIQIASDYTISSNYKCYDKLFNLRQNKKFPRLTGRTAQNLIKKESKRYYKLIRMFYSLKVMSNSDDDITHLPVVNQIKELTIEIEQLIDLQLKVLFNILALRYSPDNIWIAYNGLLSKQTNSQIEAKEYLNEVLHRKLSTQVINATNAYLKLQEKHFDYTNEIQLYPEKTLIKKSILLDEELLENKLVKLLHVMPLSQRKRIVLYLENSEKEGVITFLKRLNINPKEKTA
>NZ_CP011373.1|WP_060523575.1|1736472_1737774_+|serine-hydrolase
MKIIKTLSILLIALFCIAFYPIDGYNITGIKRLKRLEKTLDSTITEYYLKKGSFKKHDEVNLWLCEETVSTDSLMVVDKEFQKEMMSLFPSKQGYGITVMDITNPEKTRYAEMNENRGFQPGSVGKIAVATAFFNELRQLCPEDWHVRQRLLRNKIVKSGNWGLYDHHTIPVVDLEKDKYVKRTVVYEDEFSLYEWLDHMLSVSNNGAASIVWREALLMNIFGDEYFNLTQEQADEYFETADRRLLTDRAIQLVNQPLRDLGIGHDEWRLGSFFTNGPDRYVSSKGGSIGTPKGLMKYLLQLEQGCVIDEESSLEIKRLLYMTDRRIRYAYSPRLNNAAVYFKSGSLYSCDKSKDTPCGKYRGNRYNYMNSVIIVEHPDGTNYIVCLMSNVLSKNSAGAHMYLASKIDQAIHKRNTQNNATTIQEENPDVGEG
>NZ_CP011373.1|WP_060523574.1|1733563_1736473_+|phosphoenolpyruvate-synthase
MLRKLLFITLLVPILGTAQKFTDSQIKEMIETYKGLDRGPYKSINWFCEDGTIRDSKDPCPGDLEGIQHASYKPQVIELAQRNHIYFGEILASNEIWKFWDGNNNHSRLKQYQLQKFLENSDNGWIQEKSQFYRGAKQIEDEEEWGRKFYYTVLSSNEIVDRDFFLVRESLRDLPHDGDTNLSQEIRSLSKILAERNPAFMELRIKIHGNPEKEDTQAVENWLKEHEKKIKKEDLEKFELLIDKMHEFFKPVSISELEKMVSDWDKNSFIYNQVSWFSSTYKNETDPSIIIPAASGLMCDIRVNLKEDRRGTRRTSALELSLRLEELIFQQASQWKPNTIREHIDKIYALSEALASAGYIEQWEWDLVENDLHIHTDATVKAKILLQFIQKARQQLAWGSGMVKSIYGDTVEQYASFEPLALGFYDDKIRSSLLLPLGDAIGDFSGLVSRQIGMENNVPVVDNTSTIKGLNPGYAVGTLHVVSGDAHGLSVNSSDIYVFETPPSDLKPVAGIATVSEGNLVSHVQLLARNLGIPNAVISTENLSDLKKLDGKLVFYAVSPNGIVHLFDKDQLSNEEQDLFTASKSKDKKEIRIDENRLKLEITSPVDMATVTSKDSGILCGPKAANLGQLKQLFPEKVVNGIVLPFGVFKDHMLQSMPDYEGTYWDFLNNAFAKAKQLKQNGSTPTEVEQYQLEQLEILRSSIKTMPLKPSLIEELEKQFKSTLGSKLGNVPVFLRSDTNMEDLEEFTGAGLNLTVFNVVEREKILQGIRDVWASPYTERSFKWRQAYLSNPESVYPSILIIPTVDVDYSGVLITKDFLNNHTEKVTVAMSRGAGGAVDGQSAETYLIHQNGTTELIAPARENKRRRLPVTGGSYMEHVDFNHSILNEMDLKKILQFAQDAHATMPESKNGTYKGAWDIELGFKDGKLFLFQIRPFVENQNALSHPYLQKMDEMINTEIELLTSKEIHA
>NZ_CP011373.1|WP_060523582.1|1750629_1750992_-|hypothetical-protein
MNLKNFLLLFLFFIGLTSCSTDFKRVEVKTSSLEGYIEGGNGLGLYGKASLKLTGDSLVMKDWPMSRLVDNLNVIIDSSLTDQTSFNEVYTIKIANKSQLEQREFIDSLLVQLNRLQLVK
>NZ_CP011373.1|WP_060523583.1|1751094_1751976_+|M23-family-metallopeptidase
MAKRKKKKGNEFSRKKSRWTSHYRMVVLNDDTFEERFSLKLNRLNVFFITAISALLLIVLTTLLIAFTPLREYIPGYSNAKTKSTAVQLTKETDSLRQVLATKDEQYNRIKKILLGDLTFEEYESTTAEDSTTTIQAVPDLSPSEQENELRNEVAKVDRYNILNDASVRTEFVLYTPVSGSLTGSFNPEEDHYAVDIAASVGTPIKAAADGTVIFSGWTVETGYTVIIEHAFGLITVYKHAGELLKQQNDRVESGEVIASIGNTGELTTGPHLHFEIWSDGYPLDPSNFISFK
>NZ_CP011373.1|WP_060523584.1|1751975_1753472_+|GH3-auxin-responsive-promoter-family-protein
MSLKSFAARIFAKFIDRKTRKWSENPIEAQNKVFKHLLESASSTDFGNDHNFKSIKTHQEFTKQVPVRDYEDLRPYVDRVVDGESDVLWPGKPLYYAKTSGTTSGAKYIPITKESMPEHIKAARNAILSYINETGNSHFVDGKMIFLQGSPEMEDKNGVQLGRLSGIVAHYVPGYLQRNRMPSWETNCIEDWETKVEAIIDETLPEDMSVISGIPSWVQMYFERIVQRTGKPVGEVFPNFNLFIYGGVNFEPYKARFEQLIGRQVDSIELFPASEGFFAYQDTRNEKGMLLLLDAGIFYEFIPADQFYDKNPPRLTIADVEVGVNYVMIISTTAGLWAYNIGDTIAFTSVQPYRVVVTGRIKHYISASGEHVIGKEVEQAMKEACDVQEVIINEFTVAPQLNPNDGELPYHEWFIEFDQNMSFDKKKFSADLDQALRNQNSYYDDLIVGKVLQPLKITTVPKDGFKSYMKTIGKLGGQNKLPRLSNDRKIASFLESLS
>NZ_CP011373.1|WP_060523585.1|1753473_1754142_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MKLYLVPTPIGNLEDITFRAINVLNEVDLILAEDTRTSGKLLQHYSINTPMQSYHMHNEHKISDSIIERIAAGTSMALITDAGSPGISDPGYLLTRKAIESNIEVQALPGATAFVPALTVSGLPSDKFVFEGFLPVKKGRQKRLLFLKEETRSIIFYESPHKLGKTLNDFMEHMGADRKISVSREISKMFEEHFRGTVQEAISHFQSKKTKGEFVLILEGMI
>NZ_CP011373.1|WP_060523586.1|1754223_1754580_+|hypothetical-protein
MTKDELLIKRWKTTESFFQERFGDGEELDLDAILFVIGVQELGQLHRKFKKDEKLQLMHIAICRLLEPYGYYEFSHFDEDKWPHYLLKEKLPPLKAGEQSLLMKEAIVNYMLETGVID
>NZ_CP011373.1|WP_060523587.1|1754847_1755516_+|succinate-dehydrogenase-cytochrome-b-subunit
MSALVKSSLARKWVMALSGLFLVVFLTQHFVINITSVIAPDTFNEWSHFMGYNPLVQYVLQPVLIAGIIIHFVMGIVLEIQNNKARPIKYKSSPGNANASWVSRNMIITGLVVLAFMGLHMYDFWVHEMAYKYVEVNPEDPTRYYEETVEKFAPIWRVVLYVIAFVLLAMHLWHGFNSSFQSMGAKSVNKGEGLKKFTKVWSILIPAGFIFIALFHHLNHTN
>NZ_CP011373.1|WP_060523588.1|1755518_1757522_+|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit
MSVLDSKVPSGPLADKWTKHKNTINLVNPANKRLIDVIVVGTGLAGGSAAATLAELGYNVKTFCYNDSPRRAHSIAAQGGINAAKNYQGDGDSNFRLFYDTIKGGDYRSREANVHRLAEVSGNIIDQCVAQGVPFAREYGGLLDNRSFGGVLVSRTFYAAGQTGQQLLLGAYSALNRQINRGKVQPFNRHEMLDLVVVDGKARGIIARNLVTGEIERHGAHAVVIASGGYGNVFFLSTNAMGSNVMAAWRTHRRGAFFANPCFTQIHPTCIPVSGEHQSKLTLMSESLRNDGRIWVPKDLEDAKAIREGRLRGVDLPEEKRDYYLERRYPAFGNLVPRDVASRAAKERCDAGYGVNKTGNAVYLDFAASFLRYGKIEALTSGKKNATEEEMIALGKKVIEKKYGNLFDMYRNITDDNPYEVPMKIFPAVHYTMGGLWVDYNLQTTVPGCFAAGEANFSDHGANRLGASALMQGLADGYFVLPYTIGDYLSNEIRTGEISTDTPEFDEAEKDVRNRISKLMNGSGKHSVDYYHKKLGLIMWNKCGMSRNEKELKEAMDEIAELRADFWQNVRVPGSADTKNQELEKAGRVADFLELGELFAKDALDRNESCGGHFREEYQTEEGEALRDDENYTYVSAWEYNENPREAKLHKENLVFENVELKTRSYK
>NZ_CP011373.1|WP_042277010.1|1757577_1758324_+|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MKLTLKIWRQENANAKGKMVTYQLDGVDGDMSFLEMMDILNEDLNNKGEEPVEFDHDCREGICGACSMVINGQPHGPQKLTTTCQLHMRKFKDGDTITIEPWRAAAFPVIKDLMVDRSAFDRIQQAGGYISVNTSGNTQDANAIPVEKENADEAFYSATCIGCGACVAACKNASAMLFTSAKISQYALLPQGQVEATTRVENMVRQMDLEGFGNCTNTGACMVECPKGIKLENIARMNREYLKAETIG
>NZ_CP011373.1|WP_060523589.1|1759578_1760046_+|hypothetical-protein
MKWMVLVIALTLVNCKSKEGVATMNAKNNENTISVQQWSGGAPGSGSGYLIDFEKAFFDEKPSKVYFKGSWTDKVYIHPDKPNWYRVRLNNQKGDVVMHSDSSKEVVNEIPFPENAVRKVDDGDMAVLVGDLWIIVNNVPVKEPLFYPSAPPRQQ
>NZ_CP011373.1|WP_060523590.1|1760207_1761101_+|protoheme-IX-farnesyltransferase
MSQTETVIKSPSAIQNFVEITKPRLSVVVVFSSIAGYFLAVESADFLELFYLCAGGYFLVGSSNVFNQIIERDRDALMKRTQNRPLPTGRISVPVAWAYGIAMAFTGVFLLYLINIPTAFFGALSIVLYAAIYTPLKTITPLCVFVGAFPGAIPYMLGWVAASGDFGIEPGTLFMLQFFWQFPHFWAIGWMLEDDYKAGGFKMLPTGAADKGTALQVVLYTIWTVLISIIPVFNITGELYITWYSAILVGILGLWFLYYAIKLFKEQSKTVARKLMLVSVSYITLIQIIYVADKFLR

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Crispr_ID: NZ_CP011373_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011373_3

1880578-1880925

Orphan

Consensus_repeat	Method
TGTCCTGATACTGATGGAGATGGT	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP011373_3

>merge|NZ_CP011373|3|1880578-1880925|CRISPRCasFinder
GCTGTTGATACAGATGGAGATGGTATAACTGATAATAATGATAAGTGTCCAGAAACTCCAGGATTAGAAGAGTTCATGGGTTGTCCAGATTCTGACGGTGATGGTATCCAAGACAGTGAAGATGTTTGTCCTAATAATGCTGGACCAGCGGAAAATCAAGGATGTCCTGATACTGATGGAGATGGTGTTCTTGACAAAGACGATCAATGTCCTGAAACTGCAGGTCTTGTAGCTTTAATGGGTTGTCCTGATGCTGATGGAGATGGTATTAAAGATAGCGCAGATGATTGTCCAAATGTAAAAGGTCTTGCTGCATTCAACGGATGCCCTGATACTGATGGAGATGGT

>NZ_CP011373|3|2|1880578-1880925|CRISPRCasFinder
GCTGTTGATACAGATGGAGATGGT	ATAACTGATAATAATGATAAGTGTCCAGAAACTCCAGGATTAGAAGAGTTCATGGGT
TGTCCAGATTCTGACGGTGATGGT	ATCCAAGACAGTGAAGATGTTTGTCCTAATAATGCTGGACCAGCGGAAAATCAAGGA
TGTCCTGATACTGATGGAGATGGT	GTTCTTGACAAAGACGATCAATGTCCTGAAACTGCAGGTCTTGTAGCTTTAATGGGT
TGTCCTGATGCTGATGGAGATGGT	ATTAAAGATAGCGCAGATGATTGTCCAAATGTAAAAGGTCTTGCTGCATTCAACGGA
TGCCCTGATACTGATGGAGATGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011373.1\|WP_157539297.1\|1881515_1881851_-\|translation-initiation-factor-IF-2	unknown	unknown	unknown
NZ_CP011373.1\|WP_060523681.1\|1889222_1890584_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011373.1\|WP_060523664.1\|1872778_1874677_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223112
NZ_CP011373.1\|WP_060523680.1\|1888505_1889204_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|379187
NZ_CP011373.1\|WP_060523684.1\|1891695_1893519_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|213748
NZ_CP011373.1\|WP_060523658.1\|1861309_1862515_+\|GTPase-HflX	unknown	unknown	gnl\|CDD\|274455
NZ_CP011373.1\|WP_060523668.1\|1878687_1879881_+\|glycine-C-acetyltransferase	unknown	unknown	gnl\|CDD\|235893
NZ_CP011373.1\|WP_042279524.1\|1893687_1894716_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_CP011373.1\|WP_042277198.1\|1871791_1872712_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|238921
NZ_CP011373.1\|WP_042279509.1\|1886527_1887964_+\|polysulfide-reductase-NrfD	unknown	unknown	gnl\|CDD\|309148
NZ_CP011373.1\|WP_060523676.1\|1882070_1883408_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|365823
NZ_CP011373.1\|WP_060523662.1\|1870202_1871723_+\|GH3-auxin-responsive-promoter-family-protein	unknown	unknown	gnl\|CDD\|377019
NZ_CP011373.1\|WP_060523666.1\|1875513_1878654_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224000
NZ_CP011373.1\|WP_042279518.1\|1890611_1891691_+\|cytochrome-c-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224537
NZ_CP011373.1\|WP_060523678.1\|1883428_1886500_+\|TAT-variant-translocated-molybdopterin-oxidoreductase	unknown	unknown	gnl\|CDD\|239165
NZ_CP011373.1\|WP_060523660.1\|1863947_1869347_+\|DUF4011-domain-containing-protein	unknown	unknown	gnl\|CDD\|350801
NZ_CP011373.1\|WP_060523661.1\|1869343_1870138_-\|DUF2797-domain-containing-protein	unknown	unknown	gnl\|CDD\|378524
NZ_CP011373.1\|WP_042279511.1\|1887969_1888506_+\|DUF3341-domain-containing-protein	unknown	unknown	gnl\|CDD\|378727
NZ_CP011373.1\|WP_042277203.1\|1874754_1875363_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NZ_CP011373.1\|WP_060523659.1\|1862713_1863955_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320684

Protein	Function_ID	Function_description	E-value
NZ_CP011373.1\|WP_060523664.1\|1872778_1874677_+\|amidophosphoribosyltransferase	gnl\|CDD\|223112	COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism].	4.55602e-39
NZ_CP011373.1\|WP_060523680.1\|1888505_1889204_+\|cytochrome-c	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	2.47979e-09
NZ_CP011373.1\|WP_060523684.1\|1891695_1893519_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	gnl\|CDD\|213748	TIGR02891, Probable_cytochrome_c_oxidase_subunit_1-beta, cytochrome c oxidase, subunit I. This large family represents subunit I's (CtaD, CoxA, CaaA) of cytochrome c oxidases of bacterial origin. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits I-III form the functional core of the enzyme complex. Subunit I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit II and heme a of subunit I to the bimetallic center formed by heme a3 and copper B. This cytochrome c oxidase shows proton pump activity across the membrane in addition to the electron transfer. In the bacilli an apparent split (paralogism) has created a sister clade (TIGR02882) encoding subunits (QoxA) of the aa3-type quinone oxidase complex which reacts directly with quinones, bypassing the interaction with soluble cytochrome c. This model attempts to exclude these sequences, placing them between the trusted and noise cutoffs. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115. [Energy metabolism, Electron transport].	0
NZ_CP011373.1\|WP_060523658.1\|1861309_1862515_+\|GTPase-HflX	gnl\|CDD\|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	1.4334e-173
NZ_CP011373.1\|WP_060523668.1\|1878687_1879881_+\|glycine-C-acetyltransferase	gnl\|CDD\|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
NZ_CP011373.1\|WP_042279524.1\|1893687_1894716_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_CP011373.1\|WP_042277198.1\|1871791_1872712_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|238921	cd01946, ribokinase_group_C, Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	5.47049e-152
NZ_CP011373.1\|WP_042279509.1\|1886527_1887964_+\|polysulfide-reductase-NrfD	gnl\|CDD\|309148	pfam03916, NrfD, Polysulphide reductase, NrfD. NrfD is an integral transmembrane protein with loops in both the periplasm and the cytoplasm. NrfD is thought to participate in the transfer of electrons, from the quinone pool into the terminal components of the Nrf pathway.	2.89399e-14
NZ_CP011373.1\|WP_060523676.1\|1882070_1883408_+\|c-type-cytochrome	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	3.19744e-16
NZ_CP011373.1\|WP_060523662.1\|1870202_1871723_+\|GH3-auxin-responsive-promoter-family-protein	gnl\|CDD\|377019	pfam03321, GH3, GH3 auxin-responsive promoter.	4.00906e-148
NZ_CP011373.1\|WP_060523666.1\|1875513_1878654_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|224000	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].	2.90817e-77
NZ_CP011373.1\|WP_042279518.1\|1890611_1891691_+\|cytochrome-c-oxidase-subunit-II	gnl\|CDD\|224537	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion].	1.02692e-43
NZ_CP011373.1\|WP_060523678.1\|1883428_1886500_+\|TAT-variant-translocated-molybdopterin-oxidoreductase	gnl\|CDD\|239165	cd02764, MopB_PHLH, The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.	1.74923e-108
NZ_CP011373.1\|WP_060523660.1\|1863947_1869347_+\|DUF4011-domain-containing-protein	gnl\|CDD\|350801	cd18043, DEXXQc_SF1, DEXXQ-box helicase domain of Superfamily 1 helicases. Superfamily 1 (SF1) helicases are nucleic acid motor proteins that couple ATP hydrolysis to translocation along with the concomitant unwinding of DNA or RNA. This is central to many aspects of cellular DNA and RNA metabolism and accordingly, they are implicated in a wide range of nucleic acid processing events including DNA replication, recombination, and repair as well as many aspects of RNA metabolism. Superfamily 1 helicases are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.51509e-26
NZ_CP011373.1\|WP_060523661.1\|1869343_1870138_-\|DUF2797-domain-containing-protein	gnl\|CDD\|378524	pfam10977, DUF2797, Protein of unknown function (DUF2797). This family of proteins has no known function.	1.40697e-130
NZ_CP011373.1\|WP_042279511.1\|1887969_1888506_+\|DUF3341-domain-containing-protein	gnl\|CDD\|378727	pfam11821, DUF3341, Protein of unknown function (DUF3341). This family of proteins are functionally uncharacterized. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.	2.05307e-77
NZ_CP011373.1\|WP_042277203.1\|1874754_1875363_-\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	5.97626e-110
NZ_CP011373.1\|WP_060523659.1\|1862713_1863955_+\|M48-family-metalloprotease	gnl\|CDD\|320684	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48 family Ste24p-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi. Some members also contain ankyrin domains which occur in very diverse families of proteins and mediate protein-protein interactions.	1.26328e-11

>NZ_CP011373.1|WP_060523668.1|1878687_1879881_+|glycine-C-acetyltransferase
MYGSIKEHLQKEIAEIKEAGLYKRERIITSPQDAVITLNDGSEVINFCANNYLGLSSHPEVVEAAKKSLDSHGFGMSSVRFICGTQDIHKELEQKLADFYGAEDTILYAACFDANGGVFEPLLTKEDAIISDSLNHASIIDGVRLCKAGRYRYASGDMSDLEKQLIKANEDGARFKVIVTDGVFSMDGLLAPLDEICDLADKYDALVMVDECHAAGFLGDTGRGTLEAKGVLGRVDIITGTLGKALGGAMGGYTCAKKEIIEILRQRSRPYLFSNSLAPSIVGASIKALELIDSSTALIDKVQSNTAYFKKGLQDLGFDIIDGDSAIVPVMLYDAQLSQNMADALLKEGIYVIGFFYPVVPKEKARIRVQLSAAHDQIHLDKALKAFEKVGKELGII
>NZ_CP011373.1|WP_060523666.1|1875513_1878654_+|UvrD-helicase-domain-containing-protein
MTQQPTTIYSASAGSGKTYTLARDFLTKLLSQKTNRGYRYILAVTFTNKAVAEMKTRILEYLKELGQAEWSDKIVPIAQHVQSQSGLSEQQLKDKSHRVLQYLLHDYAAFDVVTIDTFNHRLLRTFSKDMKLPDGFQVALDTDELIEKAVNQVIDRAGNDKQLTDILVEYALEKIDNDRSWNIAIDLQKMAKRIGSENNYRYLKDLKNKDISEFVRFRESVKKKIHSLRQSITDGAIEIDSQRLKMGWAINDFSYKSTGAIGQIQKLSDGNWDLKLFPRLLNANESNLLPKSTRIELTDSFIKLIDDYIPVYKSSMQQLLLLNNIYNSLVPLSLLGVIAKEIEKIKDKERLLPIYEFNTLLREQIKDEPAPFIYERLGEKYRHYFIDEFQDTSVMQWQNMQPLIAHAVQSMSVDEQGGTLMLVGDAKQAIYRWRGGDVNQFLELMSSQELFFTGVNKEPLEFNWRSYDEIVNFNNNFFTFLGNKLQSPVYNELYRNYLKQKTSNNPGGYVQIDILKDDYLDYLDPEKLILEVSKASSYHVLEQIKHARTAGYLNDEICILVRNNSLASEIARFLELNGERVVSAESMLVGHSPKVAYLVALLNYIASDQPELKYNFLLEHSLNSGAENRHDFINSLMNKSQESIFQELFDQPSLRDELSRRSLYSFVQWLVECTAIMQKLDARLSQFLEMVFEFSSQNQTGLTGLLQHWTTIENKLSLSGSDTTGAIQVMTIHKSKGLEFPVVIVAGCDTKYNDLKRTSEWLQVDPNDFEGFEYLLLSMKEECKQYPDPVPKLYERSLEQEKLDNINVWYVAFTRSVERLYINTQKPYSKKDTMFEFLEQYVNDSMLLSSKEFENFTSYALGQDEKLSTSHALDIPMYLDQFHSNSNHSGIQISTRKGQLWSTGKDISIERGNLIHHYLEKLITQEDLSNVKELIHQSTTLSKDEKLELSSTCEKLIAHDEMKDYFNNKFKVLIERPIIDKNGFKFIPDRVVIYKDEVTIIDYKTGKPDVSHKEQVDHYGILYDNMGYLVSSKVLVYLDTMTIIRW
>NZ_CP011373.1|WP_042277203.1|1874754_1875363_-|superoxide-dismutase
MSFELPNLPYAHDALEPHIDARTMEIHHGKHHAGYTSKLNNAVEGTDLEGKSIENILSNLDMSNTAVRNNGGGFYNHRLFWEVMSPNGGGNPDGELATAINESFGSFEDFKNKFSDAAKGQFGSGWAWLCVHEGGKLEVCGTPNQDNPLMPEVGCGGTPILGLDVWEHAYYLNYQNRRPDYVEAFFNVINWTEVSKRYAEGK
>NZ_CP011373.1|WP_060523664.1|1872778_1874677_+|amidophosphoribosyltransferase
MSDALKHECGIALIRLLKPLEYYKEKYGTAFYGINKMYLMMEKQHNRGQDGAGFASIKLDVDPGQRYISRVRSNQPQPIQDIFGQINDRINTELYNSPEIREDVAAQKSQIPYLGEVMIGHVRYGTFGKNSIESVHPFLRQNNWMHRNLIMAGNFNMTNVKQLFDKLVSLGQHPKDLADTITVMEKVGHFQDRQVRKLYKKFKNEGYSKVEASPKIAEELDVAKILRKSARDWDGGYAMGGLMGHGDAFLLRDPAGIRPAYYYQDDEVIAIASERPVIQTAFNAPFEQVQELEPGNAIIIKKDGRVSIEQIKEPLERKACSFERIYFSRGSDAEIYKERKELGRLLFPRIMDSIDHDIENSVFSFIPNTAETSFYGMVEAAHAALDQQKTDAILAGNGQLTREQVESTLSRKLRTEKIAIKDAKLRTFITEDSSRDDLVAHVYDVTYGVVKQDDNLVIIDDSIVRGTTLKKSILKMMDRLQPKRIVVVSSAPQIRYPDCYGIDMARLEDLVAFRAALELHKERGTYQMVEDIYEKCLTQVNFEDIDVVNYVKEFYDPFTDEEISNKIAVLLSDEDLNAEVKIIYQKVDDLHKACPKNLGDWYFTGNYPTPGGNRVVNRAFINFFEGNKERAY
>NZ_CP011373.1|WP_042277198.1|1871791_1872712_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MSKLVVVGTVAFDAIETPFGKTDKILGGAATFIGLSASHFNTDVALVSVVGGDFPQEYLEMMKNRGMNIDGIEVVEDGKTFFWSGRYHNDMNSRDTLVTELNVLADFNPIVPEEYKDAEVVMLGNLHPAVQMGVLDQTPNAQLVILDTMNFWMDIELELLKKVIERVDVITINDEEARQLSGEYSLVNAAKKIHEMGPKYVVIKKGEHGALLFHDGDIFFAPALPLEEVFDPTGAGDTFAGGFAGFLAASGDYSFENMKRAIIYGSNFASFCVERFGTERMQSITNDEIETRLKQFQALTKFEMKA
>NZ_CP011373.1|WP_060523662.1|1870202_1871723_+|GH3-auxin-responsive-promoter-family-protein
MGNTILNSVVSWFLKKRIHDMELFIKHPQELQDNVLQDLIYFARNTEYGKKYGFKDIKSYKDFAAIMPVVEYSDVQADIERCKSGENNIFWPTDIKWFAMSSGTTSARSKFIPVSQESLEDCHYAAAKDLLCMYLNNNPESKLFTGKGLRLGGSKKLDKKAGTAAGDLSSILIDNMPFWADYSSTPGNETALLADWETKLPAIVNETVKERVTSLAGVPSWMMVLLNKVLETTGKDNILQVWPDMEVFFHGGVSFDPYIEEYRKLLPSDRVKYYEIYNASEGFFAIQDKNDSKELLLMLDYGIFYEFIPMDNYGTPDEEIIPLNQVELGKNYAVIITTNAGLWRYKIGDTVRFTSTSPYRIKVTGRTKHHINVFGEELIIENAEEALKNTMISVPCAIKEYTVAPVFMHGKEKGAHEWMIEFNTAPVDELAFAKALDENLQKVNTDYEAKRYNNTTLTAPRIHHAKENTFYNWLKDKNKLGGQHKIPRLSNSREYMEELLKIHNSL
>NZ_CP011373.1|WP_060523661.1|1869343_1870138_-|DUF2797-domain-containing-protein
MKVTGTVRKMQTEIQEQVQYYLVFPDQFVHMNQLLDKSITIKHVANECLNCGLDKKIWRQGFCYDCFTAIPQAGDWIMKPELSKAHLDEEDRDLEYEKKVQLQPHIVYLANSSNIKVGVTRKSQIPTRWIDQGAHEAIAILETPNRYLAGISEVALKEHVSDKTNWRKMLTNDVEDVDLLRFRESLLQHLPQETLPYTLDNAKEWEIEFPVLEYPKKVKSVNLTKTPEHNGVLKGIKGQYLIFNDGHVMNLRSHEGFVIDIEVH
>NZ_CP011373.1|WP_060523660.1|1863947_1869347_+|DUF4011-domain-containing-protein
MNDYRKSFFSLLDEIKASNGNTTVDFIAQVLPLLEKALYAHNQDKVLKITSIDQVLYNGRILIIEQETSSAVISTGLPQKPKEDGAVKVSDTIYQNRSNNVTSFENQSDYLHLDNASPVKNPAYVMHYKAWDYEMGTYDPLTEVFLLGMLMASLAYGLDFRDKDELLRFVENRERLYFLKKELDPTIHHVIREMTPIYREDRIPNLEEVVAKLKNYQDFNPENYQDLTETIGFKSINIKERGTYILDKLRRRLFDISRRNKLLYFKSTSSFLNLTEASIPLLLDHKNITEKDIIFWGPVMEGKLLGKKSLLLNRYLDITNNRFLNPILNKIRLEARKSRNEYGFDQLRLVVAFLHWYNFKENREERISSPLLLLPVSLVKKKGVEDRYQLEVTTTDAEINPVLSYYLKDLYDIELPDFIDLKESSLEDLIGNIRNQILNSGNGVELQWREKPQIQLIHKAARRNFKLKKRKLNRRTSNLNLRQFDYSYKEDDFKPLGIELFKTLVHKKINDLEYIINEDINPYSDLAVAEKERSFYRNDNYGVVNPLVWEVDTCNMTLGNFNYRKMSIVRDYNDIINADIKDEVFEELFSENPRKLIEEEGISTQLNDLYPIIAADPTQTKAVYKARSGRNYIIQGPPGTGKSQTITNLIADYVARDQKVLFVCEKRAALDVVYHRLKNKQLDELCCLIHDSQTDKKSFIMNLKGTYESFLKDKMKSNAIVKERNEIIDKIQTHINRLESFHNIMRSGETPIFQVYQEVISDIDKFERLAKAEYFVIPDFDEWKSNENWIKEFLNQIRINHYGDSIKNFPLNGISPELLSTSDYKTTIHKELSSALTILEQINEWIDENDGDTTMVWDDWIKEVNLMEKSKGIIAKGNLAILTPDNPQATALLNDNKKLEKSRKKWQDKQDENRFWKVKWNAIDAYEIKNQWDRANANILKFLNPKWYRLKKQIKEAYDFQKHKVKPEIDSVLSRLVDEYDLLNSFENEKRKLENRYGFTNYDDGIQWLKQLHNTGSPIVTKWIEIDNRDYLSGLISVLPLFNSLRNSLSKIAKSFGNYSIATLEDRISGALTMTNSLSLFKPHIEKLNNADFKLQSLLRDRNWREDEINFHCAYKTILDNSDNNPAFAQMNEDSLQFSIREIQNLLDKYYNANVAFIRSRIRDQFLNKIRITESTAAQLTNEEKELKKIYKSSRKILENEFNKKMRYKSIRELATGEAQEIMTSLKPVWLMSPLSVSDSMPIDTSIFDVVIYDEASQITVEEGVPSLFRTHQTIIVGDEMQMPPTNFFSTTSVDVDEDEEEQEQRIGINLDADSLLNQGARKLPSVMLGWHYRSRRESLISYSNAAFYKRELLTIPDNQLSIHGAGELTHVLNTDQEIDIDDVLQRSISYHYLENAVYHKRSNKDEATYIAHLVRKLLTQQVNKSIGVVAFSMEQQSVIESALEELALLDTRFGKLLEEEYNRTEEDQFTGLFVKNLENVQGDERDIIIMSVCYGFNTQGKMLMNFGPINRRGGEKRLNVIFSRAKRNMMIVSSILGEHIKNDYNEGARYFKRFLQYAKQISDGNIENASSILDSLHVSQNLDLKGKEIPLKSKLKEVLKAKGYEVYNDIGQSHFKVDIAIISPNDTQFKMGILLDYKSHYHGDNVLEQYCQKTSVLETFGWKILRVYVKDWVEQPNRVLEKIRQTIENEEKLSPVTATNHEREMQEVVSEDVQQVSDSTIESQSSQTSDDFKRYEYVQGNSNKFWEIKVIGNEVHTRYGRIGNQPQTNVKSLSTRADALKEEMRLTGVKLRKGYRRS
>NZ_CP011373.1|WP_060523659.1|1862713_1863955_+|M48-family-metalloprotease
MNQSTETSLQRSLPTFNYHKKIRDYFKSRSKTWQWFKDEKVKSHQIDALKSSLLKNTYRLDRDSHFDLFKVSDQVCENLNLTAQVTFYQEQNSIQDNCAISIIEDEAHIVFSGNLLELLDERQLTALIAHELGHFLFFKIENGEFEITQRIILALANDSQSDPVFVETARKFQLFLELFCDACSFQVCREHYSVIQCLVKVSTGLKRVNAQSYLDQAKEILQGEENSSLNTTHPETYIRTFALDQLSRSAHNLEEVIKPLIIGKIDVNNLDLFQQKELSSFTYQFLEFILLPEWMRTSRNMTHASSFFSKFYVSNEKQEVNSIKKFINDAAIGTHNYLCYVLLDFSKLDADLELLPLAHTLEIANLLGIKEEYERIVRKEYQLTIREFKSLKDEAMKDLNKLSQEQRSIYDHE
>NZ_CP011373.1|WP_060523658.1|1861309_1862515_+|GTPase-HflX
MLEQESHEYENAVLIGIVTQQQSEEKLTEYLDELEFLAYTAGASVKGRFTQKMQHPNPKTFIGTGKMEEVAQFVEANDIGTVIFDDELTPTQQRNIEKILKAKIIDRTYLILDIFAQRAQTSYARTQVELAQYEYLLPRLVGLWTHLERQRGGIGMRGPGETEIETDRRIVRDRISLLKKKLTTIDRQMKTQRGNRGKLVRVALVGYTNVGKSTLMNVVSKSDVFAENKLFATLDTTVRKVVVKNLPFLLTDTVGFIRKLPTQLVESFKSTLDEVRESDLLLHVVDISHESFEDHIDSVNAILQDIEAIDKPTIMVFNKIDQYQPEEYVDEFDERTTAHNTLEDWKRTWMNRAGDDVIFISAIEKENMEQFRKKVYDRVREIHVSRFPYNAFLYPDYSEEE
>NZ_CP011373.1|WP_157539297.1|1881515_1881851_-|translation-initiation-factor-IF-2
MAFSINSIAQNNTQVEETTVNELFAKKVALEKDGKFKDRFTIQLIYGGREVATKTKAKYDNLNLSWPSELKWESPNHKVWIGKFRNRLEADRALIEIREHFPDAFILKPQS
>NZ_CP011373.1|WP_060523676.1|1882070_1883408_+|c-type-cytochrome
MINKKLHFSAWRFVLALAIVLFSTTAMAQDDASAGEPAAAQASGADAAKGKELFNANCAACHKLYKKAVGPALNGVSEKYDREWLYKWINNSAGLIASGDPQAVALYNEWGQQNMNAFPGLSTQDIDNILAYTDTPKPEKAAGAVAGAQQGGAVTGGDNSMTNNIILAALAIVLLLLVVLLVVVNKTLKRFAEANGIQTEIVDEEELDRKPIWKAFVENQFLVLVTSIVLLFASLYFVYGAMMSVGVDQGYAPVQPIHYSHRIHAGTNQIDCKYCHSSARESKHSGIPSLNVCMNCHKSIAEVSEETYQEGMNEYGIDYNKEIQKLYKATGWNPDEMKYAGEGEPVRWVRIHNLPDLAYFNHAQHVTAGKIECQTCHGPVEEMEVMYQYSPLTMGWCINCHRETNVDLKGNGYYEQIHKELSEKRGGRQLTIADLGGLECGKCHY
>NZ_CP011373.1|WP_060523678.1|1883428_1886500_+|TAT-variant-translocated-molybdopterin-oxidoreductase
MATTKKYWKSTAQLQDDNEIIQSLEQNEFASPIPTDEFLGNDEAMESSSTSRRDFLKYVGFSTAAASLAACEGPVINSVPYVNQPERIIPGMANYYATTIANGYDFASILIKTREGRPIKVENNKDAAFRGSASARAHASVLSLYDTNRLQYPTANGEQVEWSQLDRQVKEKLAGVAGKEIAILSRTFASPTYNKVISKFKEAYPTATITVYDTVSEDAALDAFNAKYGVRALTDYDFTDAVSIVSVGADFVGDWQGGGFNKGYGQSRVPKNGKMSQHIQFESNMSLSGANADRRFPVTPTEQKHIIAALYSKIVGGPSPKLSDKLSKAVEQAAISLKRAGSKAVVLCGLPSMEAQLLTLEINEALASSIADVKAPIMTRQGNRKAVKGLVSRMNAGQVGVVIFADVDPVYSYDDNDAFAKALTKVSTKISLATRADATAVKSDYVAATPHYLEAWGDTEIKKGYVYLTQPTINTLFDTRQAEDSLLVWAGSTSSYSDLVKETASTNGASWNQSLHDGFYAYSGPVVEEGEVDAPVSSTVSAASALSKLSAAKQPSDYELVLYTKAGLGDGTMANNPWLQELPDPITRTTWDNYVTISQKDAESLGVENYNVANGALDGSYVNVTVNGKTEKLPALIQPGQASGTIGVALGYGKKEAIQEEMQTGVNAYPFYKDGLNVQSASVALADGIHEFACTQLQNTMMGRDIIRETDLATYKTGNKDEFNPMPEVSLNHIETPVTSPDVDLWESFDRSVGHHFNMSIDLNACTGCGACVIACHAENNVPVVGKTEVRKSRDMHWLRIDRYYSSTESFEGDESKKDGFEGLFGDNGSLGGFGELEIPADNPQVAFQPVMCQHCNHAPCETVCPVAASSHGRQGQNHMAYNRCVGTRYCANNCPYKVRRFNWFLYNGNDEFDYHMNNDLGRMVINPDVTVRSRGVMEKCSLCIQMTQMTILEAKKDGRPVKDGEFATACSNACSDGAITFGDINDKDSEIFKVKQQDRMYHLLEEVGTEPNVMYQVKVRNV
>NZ_CP011373.1|WP_042279509.1|1886527_1887964_+|polysulfide-reductase-NrfD
MAHYEAPIRRPLVTGDKTYTDVTRDIAAPVEGVANKQWWLVFTISLIAFLYGLGCITYTVATGIGVWGLNKTIGWAWDITNFVWWVGIGHAGTLISAVLLLFRQKWRMAINRSAEAMTIFSVIQAGLFPIIHMGRPWLAYWVLPIPNQFGSLWVNFNSPLLWDVFAISTYLSVSLVFWWTGLLPDFAMLRDRAITPFNKKIYSLLSFGWSGRAKDWQRFEEVSLVLAGLATPLVLSVHTIVSFDFATSVIPGWHTTIFPPYFVAGAIFSGFAMVNTLLIVMRKVCHLENYITIQHIELMNIVIMITGSIVGVAYITELFVAWYSGVEYEQYAFLNRATGPYAWAYWAMMTCNVFSPQFMWFKKLRTSILFSFAISIVVNIGMWFERFVIIVTSLHRDYLPSSWTMFSPTFVDAGIFIGTIGFFFVLFLLYSRTFPVIAQAEVKSILKASGSKYKALRDNKQTTTHGDASGDTLAHPNA
>NZ_CP011373.1|WP_042279511.1|1887969_1888506_+|DUF3341-domain-containing-protein
MAASNKKLHVMYTDDDVLLNAVKQVREKHYHIEEVFTPFPVHGLEKAMGIADTRLAINAFLYGLVGLAVATTMMNYIMIEDWPQNIGGKPSFSYLENMPAFVPIMFELTVFFAAHLMVITFYLRSRLWPFKKAENPDVRTTDDHFLMEVDVKGDIEEMSRFMYDTGATEIKVIDKEEH
>NZ_CP011373.1|WP_060523680.1|1888505_1889204_+|cytochrome-c
MNRIFKTFIYAALGLVMVSCMNDNETSTKTDRSVQYFPNMYRSAGYETYQEAEIFPGNVEAQKPVEGTISRGWMPYDYENNNEGYASAKANLNNPLPYTEANLAKGKELYDIYCAVCHGTSGNGKGILVKNEKILGVPSYDSREITQGSIYHVMYYGINTMGSYASQTSIEERWQIAHHVDALTRDLKGEEKREFVNGDDAGKAPVMEAPADETQQADSNDTDNNSTTTEGE
>NZ_CP011373.1|WP_060523681.1|1889222_1890584_+|hypothetical-protein
MYTLSSKLKVFAGILFVVGLIMTVFGFINRPADLAEVEQMLENEHHGDHHGASTVNFEDATNDHHNTHGEESHGDEAHGESHEMSHAEHVYHQLTNRPWSAVYVAAFFFFMIGLGVLAFYAIQKAAQAGWSPVLFRVMEGISSYILPGGIIMFILLLISAFHVNHIFIWMDEDVVAHDEIIQGKTGFLNIPFFLARAAAFLIGWNLYRWNIRKFSLKQDEAKDGDIAWYKKGFKHSAAFLVFFIVTESIMSWDWIMSFDPHWFSTLFGWYVFASMFVSGITTIALVTIYLKSKGYLEFVNDSHIHDLAKFMFGVSIFWTYLWFSQFMLIWYSNIPEEVTYYVTRIEDYNLVFFGMVAINFLFPLLILMNSDFKRINWFVVTAGLFILVGHYLDIYVMVMPATVGASWFIGLPEIGSFLMFGGIFLFYVFNTISKAPLLAKGDPYLKESKHFHY
>NZ_CP011373.1|WP_042279518.1|1890611_1891691_+|cytochrome-c-oxidase-subunit-II
MTAFLIILIAALIAVSAWQISKIVSLGKASSGSNGAEAQIANDEDNKRNGQFMLYFGIGIYIMMIACFIAYDDFFLPDAASEHGTEYDSLLFTSTIIIMIVQVLTQGLLHYFSYKYHGKKGQKALFYADNDRLEFIWTAIPVVVLAGLILWGLFSWNDIMDANMDDDPIVVEVYAYQFGWKARYSGADNTLGDANVRFIEGANQLGVDPTDADGQDDVVTTELHLPVDRPVLFKFRSQDVLHSAYFPHFRAQMNVVPGMVTQFKFTPTVTSEEYKSTEFMTEKVSKINEIRRQRSKELEANGDVALDPYEFEYYLLCNKICGASHYNMQMKIVVEEKEDFDAWIAEQKTIGTTLANAEN
>NZ_CP011373.1|WP_060523684.1|1891695_1893519_+|cbb3-type-cytochrome-c-oxidase-subunit-I
MGQAISVSTENAHDDGHHHHKETFVTKYIFSQDHKMIAKQYLITGLIMGAIGIAMSILFRIQLAYPEQPNALFSLFLGERWAEGGVMNPNMYLALVTLHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFLNMVSYWLFFLSSVIMIASLFVETGPAAAGWTIYPPLSALEEAMPGSGAGMTLWLVSMAIFIASSLLGSLNYVVTVINMRTKGMSMTRLPLTIWAFFVTAIIGVVSFPVLLSAALLLIMDRSFGTSFFLSDIYIKGEVLAHQGGSPVLFEHLFWFLGHPEVYIVLLPALGITSEVIATNSRKPIFGYRAMVASILAIAFLSTIVWGHHMFVSGMNPFLGSVFTFTTLLIAIPSAVKAFNYITTLWKGNLQMNPAMLFSIGLVSTFITGGLTGIILGDSTLDINVHDTYFVVAHFHLVMGISALYGLFAGVYHWFPKMFNRMMDKNLGYAHFWLTAIGAYGVFFPMHFIGMAGLPRRYYTNTNFPYFDDLADTNKLITWFAIFTALAQLFFVYNFVKSIFYGKKAPANPWKSNTLEWTTGDKHIHGNWDGPIPHVYRWAYDYSKVNENGEYVIPGQDYAPQHIPLQDGEEEMNH
>NZ_CP011373.1|WP_042279524.1|1893687_1894716_+|Holliday-junction-branch-migration-DNA-helicase-RuvB
MNEYLDASSENLSNEEHDIERALRPLSFDDFAGQDQVLENLKVFVQAANLRGEALDHTLFHGPPGLGKTTLAHILANELGVGIKVTSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYSAMEDYKIDIMIETGPNARTVQINLAPFTLIGATTRSGLLTAPMRARFGIQSRLQYYTTELLSTIVTRSAHILNVPIDIDAAIEIAGRSRGTPRIANALLRRVRDFAQIKGNGSIDLNISQFSLKALNVDAHGLDEMDNKILTTLIEKFKGGPVGITTLATAVSENAETIEEVYEPFLIQQGFIMRTPRGREVTELAYKHLGKTRHNNLGGLFDT

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Crispr_ID: NZ_CP011373_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011373_4

2131485-2131683

Orphan

Consensus_repeat	Method
TAGCAGTAACGAGCACAGTAGACTGTGATGGAGATGGAGTAACGGATGCTGATGAGAT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP011373_4

>merge|NZ_CP011373|4|2131485-2131683|PILER-CR
TATCAGTAACGAGCACAGTAGACTGTGATGGAGATGGAGTAACGGATGCTGATGAGATTAATGGTCCAGATGGAGATCCAAATACAGCAGACGGAACCGATCCAAACGATCCATGTAGTTATGATCCATCAAGTGTTACGTTAGCAGTAACGAGCACAGTAGATTGTGATGGAGATGGAGTAACGGATGCTGATGAGAT

>NZ_CP011373|4|2|2131485-2131683|PILER-CR
TATCAGTAACGAGCACAGTAGACTGTGATGGAGATGGAGTAACGGATGCTGATGAGAT	TAATGGTCCAG
ATGGAGATCCAAATACAGCAGACGGAACCGATCCAAACGATCCATGTAGTTATGATCC	ATCAAGTGTTACGTTAGCAGTAACGAGCACAGTAGATTGTGATGGAGATGGAGTAACGGATGCT
GATGAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011373.1\|WP_060523910.1\|2119201_2121202_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP011373.1\|WP_060523906.1\|2086310_2090618_+\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NZ_CP011373.1\|WP_042280475.1\|2118253_2119189_+\|type-IX-secretion-system-membrane-protein-PorP/SprF	unknown	unknown	gnl\|CDD\|371704
NZ_CP011373.1\|WP_042280475.1\|2142508_2143444_+\|type-IX-secretion-system-membrane-protein-PorP/SprF	unknown	unknown	gnl\|CDD\|371704
NZ_CP011373.1\|WP_060523918.1\|2145635_2146652_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP011373.1\|WP_060523904.1\|2082410_2086220_+\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NZ_CP011373.1\|WP_042277359.1\|2148683_2148950_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011373.1\|WP_042279751.1\|2080632_2081331_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NZ_CP011373.1\|WP_060523920.1\|2148944_2149652_-\|DUF4369-domain-containing-protein	unknown	unknown	gnl\|CDD\|379543
NZ_CP011373.1\|WP_157539262.1\|2091466_2118199_+\|gliding-motility-associated-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372639
NZ_CP011373.1\|WP_042279754.1\|2081343_2081859_+\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
NZ_CP011373.1\|WP_042277355.1\|2147256_2147667_+\|6-carboxytetrahydropterin-synthase	unknown	unknown	gnl\|CDD\|376501
NZ_CP011373.1\|WP_042279760.1\|2090623_2090935_+\|DUF3467-domain-containing-protein	unknown	unknown	gnl\|CDD\|371814
NZ_CP011373.1\|WP_060523921.1\|2149697_2151014_-\|DUF819-family-protein	unknown	unknown	gnl\|CDD\|114410
NZ_CP011373.1\|WP_060523916.1\|2143462_2145442_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP011373.1\|WP_060523919.1\|2147666_2148644_+\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|380413
NZ_CP011373.1\|WP_060523926.1\|2151074_2152031_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP011373.1\|WP_042279757.1\|2081907_2082285_+\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
NZ_CP011373.1\|WP_042277354.1\|2146750_2147260_+\|isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl\|CDD\|239218
NZ_CP011373.1\|WP_060523912.1\|2121270_2122872_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105

Protein	Function_ID	Function_description	E-value
NZ_CP011373.1\|WP_060523910.1\|2119201_2121202_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	1.52704e-36
NZ_CP011373.1\|WP_060523906.1\|2086310_2090618_+\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NZ_CP011373.1\|WP_042280475.1\|2118253_2119189_+\|type-IX-secretion-system-membrane-protein-PorP/SprF	gnl\|CDD\|371704	pfam11751, PorP_SprF, Type IX secretion system membrane protein PorP/SprF. This entry describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Cytophaga johnsonae (Flavobacterium johnsoniae), that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss of the rapid gliding phenotype.	9.22505e-113
NZ_CP011373.1\|WP_042280475.1\|2142508_2143444_+\|type-IX-secretion-system-membrane-protein-PorP/SprF	gnl\|CDD\|371704	pfam11751, PorP_SprF, Type IX secretion system membrane protein PorP/SprF. This entry describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Cytophaga johnsonae (Flavobacterium johnsoniae), that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss of the rapid gliding phenotype.	9.22505e-113
NZ_CP011373.1\|WP_060523918.1\|2145635_2146652_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.17373e-86
NZ_CP011373.1\|WP_060523904.1\|2082410_2086220_+\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NZ_CP011373.1\|WP_060523926.1\|2151074_2152031_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.14693e-07
NZ_CP011373.1\|WP_042279751.1\|2080632_2081331_+\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	6.83966e-134
NZ_CP011373.1\|WP_060523920.1\|2148944_2149652_-\|DUF4369-domain-containing-protein	gnl\|CDD\|379543	pfam14289, DUF4369, Domain of unknown function (DUF4369). This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00578.	1.25563e-12
NZ_CP011373.1\|WP_157539262.1\|2091466_2118199_+\|gliding-motility-associated-C-terminal-domain-containing-protein	gnl\|CDD\|372639	pfam13585, CHU_C, C-terminal domain of CHU protein family. The function of this C-terminal domain is not known; there are several conserved tryptophan and asparagine residues.	3.08721e-28
NZ_CP011373.1\|WP_042279754.1\|2081343_2081859_+\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	9.00446e-52
NZ_CP011373.1\|WP_042277355.1\|2147256_2147667_+\|6-carboxytetrahydropterin-synthase	gnl\|CDD\|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	2.56829e-41
NZ_CP011373.1\|WP_042279760.1\|2090623_2090935_+\|DUF3467-domain-containing-protein	gnl\|CDD\|371814	pfam11950, DUF3467, Protein of unknown function (DUF3467). This family of proteins are functionally uncharacterized. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.	9.02137e-33
NZ_CP011373.1\|WP_060523921.1\|2149697_2151014_-\|DUF819-family-protein	gnl\|CDD\|114410	pfam05684, DUF819, Protein of unknown function (DUF819). This family contains proteins of unknown function from archaeal, bacterial and plant species.	1.47715e-72
NZ_CP011373.1\|WP_060523916.1\|2143462_2145442_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	3.50662e-36
NZ_CP011373.1\|WP_060523919.1\|2147666_2148644_+\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|380413	cd07010, cupin_PMI_type_I_N_bac, Phosphomannose isomerase in bacteria and archaea, N-terminal cupin domain. This subfamily contains type I phosphomannose isomerase (PMI; E.C. 5.3.1.8; also known as mannose-6-phosphate isomerase) found in many bacteria (e.g. Bacillus subtilis) and archaea. PMI catalyzes the reversible isomerization of fructose-6-phosphate (F6P) and mannose-6-phosphate (M6P), the first committed step in the synthesis of mannosylated glycoproteins. The active site, located within the N-terminal jelly roll-like beta-barrel cupin fold, contains a single essential zinc atom and forms a deep, open cavity large enough to contain M6P or F6P. PMI type I also has a C-terminal beta-barrel fold which has diverged considerably from the N-terminal domain and is not included here. This subfamily does not contain an alpha helical domain that exists in eukaryotic and some prokaryotic PMIs. F6P is a substrate for glycolysis and gluconeogenesis, while M6P is a substrate for production of activated mannose donor guanosine 5'-diphosphate D-mannose, an important precursor of mannosylated biomolecules such as glycoproteins, bacterial exopolysaccharides and fungal cell wall components. PMI is also essential for survival, virulence and possibly pathogenicity of some bacteria and protozoan parasites, as well as for cell wall integrity of certain yeasts. Thus, PMI is a potential target against fungal infections causing serious illness or death.	2.2944e-83
NZ_CP011373.1\|WP_042279757.1\|2081907_2082285_+\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	2.65098e-40
NZ_CP011373.1\|WP_042277354.1\|2146750_2147260_+\|isopentenyl-diphosphate-Delta-isomerase	gnl\|CDD\|239218	cd02885, IPP_Isomerase, Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mammals and plants. Despite sequence variations (mainly at the N-terminus), the core structure is highly conserved.	1.71431e-83
NZ_CP011373.1\|WP_060523912.1\|2121270_2122872_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0

>NZ_CP011373.1|WP_060523912.1|2121270_2122872_-|peptide-chain-release-factor-3
MSLQKEINRRRTFGIVSHPDAGKTTLTEKLLLYGGAIQEAGAVKSNKIKKGAASDFMEIERQRGISVATSVLAFEYNDTKINILDTPGHKDFAEDTFRTLTAVDSVIVVVDVAKGVEEQTEKLVEVCRMRNIPMIVFINKMDREGKDAFDLLDEIEQKLQLTVTPLSFPIGMGYDLKGIYNLFEKNIRLFTGESSKDINKTTSIDDLNDTALDNLIGAESAQTLREELEMVEGIYPEFNEKDYLDGKLQPVFYGSALHNFGVKELLDAFIKIAPTPRPKNAEERLVNPKEKDFSGFVFKIHANMDPKHRDRLAFVKIVSGTFERNKPYKHVRLDKNLKFSSPNAFFAEKKEIVDISYPGDIVGLHDTGNFKIGDTLTSGEILHYKGIPSFSPEHFRYINNADPMKAKQLAKGIDQLMDEGVAQLFTLELNGRKVIGTVGALQFEVIQYRLEHEYGAKCSYENLNVHKACWVDTKDWKSEEFLDFKRVKSKFLAKDKQGQLVFLADSAFSLQMTQQKYPSIKFHFVSEFESIAV
>NZ_CP011373.1|WP_060523910.1|2119201_2121202_+|OmpA-family-protein
MKLKYISTLLLVTFILNFSSAQKKSDLEKANKKYDQLAFFEAQKLYKKLFEDGYESPEILSKLADAYYFNDELEKSNKYYTLLFEKYKESVKPEYYFRHAQTLKATGQYQKADELMATFNSFKGFDSRAKKYSDEPNYLQIIDFQSGRFIIKNAEDVNSYTSDFGTAYYDAKDKVVFATSRDTSSLINRRHTWSGQAFLELYEADETNAGELRNAKEFKGVLNTRFHESTPTFTKDGNTVYFTRNNYSEGVARQDIDGVNRLKIYKSVKKGKRWLQPVELPFNSDEYSTAHPALSPDETKLYFSSDMPGSVGYDMREKFGKSDLWVVDILEDGNYSEPRNLENVNTEGRESFPFVSSNNTLYFASTGHQGLGGLDVFASSIKPDGSVSNVVNIGSPINTQYDDFSFIINDGSKRGYFSSNRPGGIGDDDIYSFIQTEEMRKECEHLLSGTVTDKNTGAPIDGALVTVLDANNNVVGDLITKANGKFVFKLECDKQYFLRGEKREYGTDEDLFTTPSQTDYSDIPLELSKNKQALADCDDIAPLLNIKQIYFDFDKSNIRPDAAAELTKIKAFMELYPQIAVEIRSHTDSRAPDDYNDALSDRRARSTRQWLIDNGIDASRLTAKGYGERQLLNKCSNGVECTPEEHQLNRRSEFIISGLGKISNCN
>NZ_CP011373.1|WP_042280475.1|2118253_2119189_+|type-IX-secretion-system-membrane-protein-PorP/SprF
MKKLIVVFVFFAFAKALTAQQDPQYSQYMYNPIVINPAYAGNRGVASIVGLHRSQWVGLDGAPRTQTLSFHTPIANSRVGLGLSVVNDEIGPADETYVAADFSYTIPVGDEARLSFGLKGGIHVLNVDFNKLNIFDPGDPRLSENVDNRLSPTVGLGLYYHTDRFYVGLSSPNLLQTDHFDEDNDTSSATFIAEERIHLFGTVGYVFDLNDNIKFKPAGLVKMVQGAPLQVDLTANFLFNEKFTVGAAYRWSAAVTGLVGFQISDQMMIGFAYDRETTELGNAIYNDGSYELFLRFELFNSYDRIITPRFF
>NZ_CP011373.1|WP_157539262.1|2091466_2118199_+|gliding-motility-associated-C-terminal-domain-containing-protein
MLLLLFILNPSSVFADGTKQLMPSATGVEPANGTALYITRGQFGPYVNAPNSSRLRFTIANAATENLYFGVFSRQRLDAANHPELGEFTYYRIYDQSGTLVEGVNPAGVQVGTLSGRFDDGAGANPIAGDAGFVSNYTEAFNGPNGVGGVTNGYNPYVFNPTTAGNYYIEFYVSTDGGATPFTFGNGDPAIFFFPYFDFTVGSTTSAIPGRIWSDKWSLIGYQNQDADGDIGTPNVPNPTLDASVEGEFYAYTDDQVIVKVDFLPGFRPLAYELSMNRFGVVDDDDNPANDFLLTRRSVNRPSNTSPNLDNGYPVFLTVPDQSVFVPAPQADPILTGEIFGCPGNYYIPYTLDAPADVALLVDFDGNGVFDANTRDVVLEAFEQPVGDNLLFWDGLDGFGDIAEAGVSISLKLVSFRGRTNVPMYDAEFNLNGLTMESVTPTLASQKLFWDDSQLTAFGTCVDASTQNTANTTTGSFVNTNLLNGNVGPGHAWNGSNPGNTVPATAGASEGTNTPTLLCDDYGNIRVINTWFYGSEVESSVVQLVVPSCDQDGDGVHDLVDIDDDNDGIPDIVELENVNANDPLGDDDGDGLLNYFDPSNGPGTDGPSSSNFVDNNNDGVSDLYDTDGDGIIDQFDLDADGDGVPDNVEAQGTLGYIAQGGLTDTDGDGLVDTYDPDCNGSSTTSASGNAVSGFTYGGNQDITPALGTPEANGVAATNLNGVRLRNTGSAGETQGPLTLEFDRGLPVGTTITFSIANDIGAGDSMNITLGSQVISNYNTGGAADSYVQFNVITTSSTSSVFFELNSGGFRIGGVSYSFTSATCSNGFAVLPVDTDFDGVPDYKDLDSDNDSINDTTENNFALSGNDTDFDGLDDTIDATSGYQDPNGNIDNPSSLPDNDGDVNGGGDVNYRDTTASVDSDNDGIFDEVDLDDDNDGILDTDECYVEPTATGPYTSTNTTFSFSGSGGNNNANLQSVTLDGTTYNDFIVPDLYTENFNSTSDNVVYEVLNGTSGQGTGPTGDNISNPNWEQIILPAFQSRNFNYFQGLSGAVLDTDFYTLSYNVPISVSGESFLLVSERNGNNTFDIEAFDAQGNSFGQLNVVLTDYINTGINTSVGQPINIAIYPLAQLAPAGSVIKSINVSPGADGDGGDGKVFILNGGSTCPDTDGDGIIDSLDVDADNDGIYDAVEAGHNEVNTDGRLTGPVGVDGVPNSVQDPGDADNGIVNYELVNSDGIDNFDFQDTDSDNDGCSDANEAYNNSSADGGDGGAYGSGIPPTNSSNGAVLAASYAQPADSNSNTVPDYTEIGPDTDGDGIIDACDDVDDRPDTDGDGVPNVVDIDDDNDGILDVVECKDESTLDWSVNTWAAGTLSNSYSVDSRDVNITVVDPNDALLNSPNLPISGAFYQGGQPSVPQTLISGFDLQTLGATGTVTYTIDFNSESFNNVAFTLLDVDGELGSIRRKERYTITGFNGASQVLPNIVPAGTQEVIGNSVLGVDPVAPTGAASGAGNVNISFSAPVDTITIVFDVTDDSVINPGSEPGFSIGNIRFSSCDFDNDGIQDLLDQDSDNDGITDNVEAQDTAGYIQPSGIDSDGNGLDDAYETTPGSGEGLTPENTDGDPNPDYVDLDSDNDNVPDATEGSDFNNDGSPDTTPSENDIDNDGLDDAFDGDTTGYGDPNGTPVTNDPGNELNNTDGTDQPDYRDTDDDNDSLLTSGTGEDTNNDNDPTNDDEDLDGVPNYLDQDDTDGDGVPDTVDIDDDNDGILDINEDANLDGDNNPFTNPSDQDGDGIPNHLDLDSDGDGIPDNNEAQTTLGYIDPLVNDADGDGIPDVTANGLPTAYNQNNDELGLLPVNTDTVDLPDYLDLNSDNQGGNDTVEAGLTLSGNDSDNDGLDDAVDQTPTYADPNGNIDDTANLPDTDGDLNSGGNVDFRDRSLPNDEDGDGVVDRDDLDDDNDGITDITEGFEFYTDNSTTCTGQTYNFNGGTLISGTAGQVGARYRFSGVRAGIDAIVEITQRSTGATLNSIDNASGDANAWQPVINYSAASSGDLTVTFNVQLVDAGTTNLTVVNRISGFIQDVDSDGSGRIREFYRLRNLVGYSLNNPTNIIATNLTGGVTQFRANGTGSAPIEPIDTDARYKVFFQRQDVNQFEYVIGVTKNINAAQSRFYSVQFDECVIDDFGGEPTVVIINAPDIDGDGIPNHLDPDSDGDGCSDTVEAGFIDAFAKAQEDGILGNLAPETVNSSNGLVTSGESGEGYTEPADLNSNGTPDFLEAGFAEACSTQLEITKTSTFDPATGVISYTYIVQNIGSSFAFDVTVSESAGLFTGTNTPLPTPAYQSGGTNEDGEGDAIDLRPGASATFTAVYTINQQDINSGQVDNQAIANAVDDNGDPISDVSDDGNDGDGNTEDDITETILGSGNLEGVVYNDINGNGTFDTGDVLLSNVDVVITPTNGDPVTVQTNASGQFTATVLSGDATVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDINDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDINDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDTGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDINDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDINDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDTGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQVVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQVVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQVVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEENNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEENNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTDVTVTAGATTTEEDNGFNVPGTVTGVVYNDVNGNGTQDAGEPGIENVEVTITDSAGQAVTVQTDATGTYTAQVAAPGTASVDIDDADLPVGFVQTEGTDPTNVTVTAGATTTEEDNGYFIVDSNLALEKTSGGVVDTNGNGITDAGDTITYSFTVINNGNVQVENLVINDNTIGLINAIVTPSTLLPGQTGTIVDQVYTLTASDIAAGVVINTAVVDGDSIDPNGDPAGPVSDDSDDPNNPANVNPDADTDPDDPTITNLTAGGILNGVVFDDENGNGVQDVGEFGIGGVTIDITNSDGTTQQVITNPDGSWSVVVPAGVTTSNIDETTLPNGTEVQTAGTDPTTTNVAAGTSVGEPADGFQTPEPNLSLDKVASAVADVNGNGFIDAGDTITYSFTVTNNGNVQVQNIVIDDAIIGVSGLVITPSVLNAGDVSNVVTTNYTLTTSDIINGSIINTATATGEALDSNGTSLGNVSDDSDDPNDLTGQDIDSDGDEEDPTFVDLSSPNLAFAKADSYTDSNGNGIADVGDIVTYSFTVQNTGNTVVTNASINDTTIGVANLPVVPATLNPGDIGTASFDYSLTASDIANGQIINSATVTAQTTDSQGNALPNVSDVSDDPDDLTNVDTDSDGDFEDPTIFNIPQEGILNGLVFEDLNGDGLQNAGEPGLGGVDVVVTDSNGVVQVVTTQPDGSWSVVVPSGDTTTDIDESTLPAGTDIQTAGTDPTTTTVGSGSNVTEPADGFFTAEANLSLEKVSGGVVDANGNGITDAGDTITYSFTVTNNGNVLVENAVISDALLGLVNEPVVPSTLAPGAVGSIADQVYTLTAADIANGSVTNTAVSEADAIDPNGDPLGPVSDDSDDPNNVNDVDPDADGDPDDPTVTPLDQNGILNGLVFEDLNGDGVQNAGEPGLGGVDVVVTDSNGVVQVVTTQPDGSWSVVVPSGDTTTDIDESTLPAGTDIQTAGTDPTTTTVGSGSNVTEPADGFFTAEANLSLEKVSGGVVDANGNGITDAGDTITYSFTVTNNGNVLVENAVISDALLGLVNEPVVPSTLAPGAVGSIADQVYTLTAADIANGSVTNTAVSEADAIDPNGDPLGPVSDDSDDPNNVNDVDPDADGDPDDPTVTPLDQNGILNGLVFEDLNGNGVQNAGEPGLGGVDVVVTDSNGVVQVVTTQPDGSWSVVVPSGDTTTDIDESTLPAGTDIQTAGTDPTTTTVGSGSNVTEPADGFFTAEANLSLEKVSGGVVDANGNGITDAGDTITYSFTVTNNGNVLVENAVISDALLGLVNEPVVPSTLAPGAVGSIADQVYTLTAADIANGSVTNTAVSEADAIDPNGDPLGPVSDDSDDPNNVNDVDPDADGDPDDPTVTPLDQNGILNGLVFEDLNGDGVQNAGEPGLGGVDVVVTDSNGVVQVVTTQPDGSWSVVVPSGDTTTDIDESTLPAGTDIQTAGTDPTTTTVGSGSNVTEPADGFFTAEANLSLEKVSGGVVDANGNGITDAGDTITYSFTVTNNGNVLVENAVISDALLGLVNEPVVPSTLAPGAVGSIADQVYTLTAADIANGSVTNTAVSEADAIDPNGDPLGPVSDDSDDPNNVNDVDPDADGDPDDPTVTPLDQNGILNGLVFEDLNGDGVQDAGEPGLGGVDVVVTDSNGVVQVVTTQPDGSWSVVVPSGDTTTDIDESTLPAGTDIQTAGTDPTTTTVGSGSNVTEPADGFFTAEANLSLEKVSGGVVDANGNGITDAGDTITYSFTVTNNGNVLVENAVISDALLGLVNEPVVPSTLAPGAVGSIADQVYTLTAADIANGSVTNTAVSEADAIDPNGDPLGPVSDDSDDPNNVNDVDPDADGDPDDPTVTPLDQNGILNGLVFEDLNGDGVQDAGEPGLGGVDVVVTDSNGVVQVVTTQPDGSWSVVVPSGDTTTDIDESTLPAGTDIQTAGTDPTTTTVGSGSNVTEPADGFFTAEANLSLEKVSGGVVDANGNGITDAGDTITYSFTVTNNGNVLVENAVISDALLGLVNEPVVPSTLAPGAVGSIADQVYTLTAADIANGSVTNTAVSEADAIDPNGDPLGPVSDDSDDPNNVNDVDPDADGDPDDPTVTPLDQNGILNGLVFEDLNGDGVQNAGEPGLGGVDVVVTDSNGVVQVVTTQPDGSWSVVVPSGDTTTDIDESTLPAGTDIQTAGTDPTTTTVGSGSNVTEPADGFFTAEANLSLEKVSGGVVDANGNGITDAGDTITYSFTVTNNGNVLVENAVISDALLGLVNEPVVPSTLAPGAVGSIADQVYTLTAADIANGSVTNTAVSEADAIDPNGDPLGPVSDDSDDPNNVNDVDPDADGDPDDPTVTPLDQNGILNGLVFEDLNGDGVQNAGEPGLGGVDVVVTDSNGVVQVVTTQPDGSWSVVVPSGDTTTDIDESTLPAGTDIQTAGTDPTTTTVGSGSNVTEPADGFFTAEANLSLEKVSGGVVDANGNGITDAGDTITYSFTVTNNGNVLVENAVISDALLGLVNEPVVPSTLAPGAVGSIADQVYTLTAADIANGSVTNTAVSEADAIDPNGDPLGPVSDDSDDPNNVNDVDPDADGDPDDPTVTPLDQNGILNGLVFEDLNGDGVQNAGEPGLGGVDVVVTDSNGVVQVVTTQPDGSWSVVVPSGDTTTDIDESTLPAGTDIQTAGTDPTTTTVGSGSNVTEPADGFFTAEANLSLEKVSGGVVDANGNGITDAGDTITYSFTVTNNGNVLVENAVISDALLGLVNEPVVPSTLAPGAVGSIADQVYTLTAADIANGSVTNTAVSEADAIDPNGDPLGPVSDDSDDPNNVNDVDPDADGDPDDPTVTPLDQNGILNGLVFEDLNGDGVQNAGEPGLGGVDVVVTDSNGVVQVVTTQPDGSWSVVVPSGDTTTDIDESTLPAGTDIQTAGTDPTTTTVGSGSNVTEPADGFFTAEANLSLEKVSGGVVDANGNGITDAGDTITYSFTVTNNGNVLVENAVISDALLGLVNEPVVPSTLAPGAVGSIADQVYTLTAADIANGSVTNTAVSEADAIDPNGDPLGPVSDDSDDPNNVNDVDPDADGDPDDPTVTPLDQNGILNGLVFEDLNGDGVQNAGEPGLGGVDVVVTDSNGVVQVVTTQPDGSWSVVVPSGDTTIDVTDPTGTVLTTVGSDPETVTVVAGTTNSSTDDGYQGQGTVTGFVFEDINNDGLYDPTVDNLFPAGTLVNLTDVNGVVTTVTVDATGNWTATVPSGDYNVDVVDPSGYILSTIGSDPESITVVTNTTVTTTDDGFILETGSIQGHVYNDLNNNGVQDPGEPDLAGVNVIVTDSLGNTQIVVTDSNGDYTVTVTGGQDVTIDIDEATLPAGAILSEGTDPTTVTVISGTTVFEENNGYYIPGVVTGHLYEDLNGNGVQDAGEPDLVGVDVVITDSNGNIQIVTTDVNGDYSALILTPGNVVVDIDDNSLPLGFVQTEGTDPTTVVVTSGSTVFEENNGFNIPSVITGHLYDDVNGNGVQDPGEPDLAGVTVIITDSLGMVQTVVTDVNGDYTVNVSAPGATIIDIDETTLPVGAVQTEGTDPTTVIAVSGVTVFEENNGFNVPGTVSGTIYDDVNGNGVQDPGEPGLSGVIVVITDSLGNIVTVVTDANGNYTAVVSAPGNATVDIDEATLPVGAIQTQGTDPTVVTVVSGIDTFEENNGYNTPATVTGHLYEDLNGNGVQDPGEPDLAGVTVVITDSDGNIQTVITDNNGDYTATIVVPGDVVIDIDETTLPAGATLTEGTDPTTVTVTAGATVFEENNGFNIPGTISGHVYLDSNGNGIQDPGEPDLAGVSVIITDSEGNTQTVITDANGDYVATVIAAGDAIVDIDETTLPNSASQTEGTDPTTVTVISGVDVFEENNGYNYPDNDGDGIPDVDDIDDDNDGIIDILEGNGDSDGDGIPDWFDLDSDGDGIPDNVEGQSTAGYVEPSGVDSDGNGLDDAYENTPGSGEGIMPIDFDGDGLPDYLDEDSDDDGVPDSTEGFDYDNDGQPDVTPSGNDADNDGLDDAFDSTPNGGYDDANGAFVDSDPRNDLNNTDGDEEPDYRDLDDDNDDIITGPDLINGDFDNDGIPDYLDSDPRKIKIFNGVTPDGDGRNDFFIIQGIENFENTVSIFNRWGVEVYNTENYNNGNRAFRGISEGRVTVAQGEKLPEGTYFYVIEYINDQNETVQLAGYLYINR
>NZ_CP011373.1|WP_042279760.1|2090623_2090935_+|DUF3467-domain-containing-protein
MANNPNQENKINIEIDEKIAEGQYSNLAIINHSHSEFVVDFVNIMPGNPKSKVKSRIVLTPQHAKRLAQALMDNIRKFENAHGEIKDYEQPPIPLNFGPTGQA
>NZ_CP011373.1|WP_060523906.1|2086310_2090618_+|DNA-directed-RNA-polymerase-subunit-beta'
MARNKETQTQKKFSKISIGLASPESILAESKGEVLKPETINYRTHKPERDGLFCERIFGPVKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRIGHINLVVPVAHIWYFRSLPNKIGYLLGLPSKKLDMIIYYERYVVIQPGIAKNAEGEPVKKMEFLTEEEYLDILDSLPQENLYLEDSDPNKFIAKMGAECLIELLNRIDLDALSYDLRHKANNETSKQRKTEALKRLQVVEAFKESNLHRENKPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLMEIKAPEVILRNEKRMLQESVDSLLDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLLGKRVDYSARSVIVVGPELKLYECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIIDKKEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPIAVPSQDMVLGLYYMTKLRRSEPNHIVKGEGLTFYGPEELVIAFNEKRVDINAPVKCRIPLLQEDGSYKSELIETTAGRVLFNEKVPNEAGYINEVLTKKALRDIIGDILKVTDVPRTAAFLDEIKDLGYGFAFRGGLSFSLGDIMIPEEKQAMIDEANAKVDAIRGNYGMGLITQNERYNQVIDVWTATNAQLTELGMKNIREDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNSGGGEIIENPILSNFKEGLSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVIVNTEDCGTLRGIEVTALKKNEEVMEKLGARILGRVALHDVVDPATQNVMVAAGELITEKIADAIDETVIESVEVRSPLTCEAKKGVCTKCYGRNLATNRLVMRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGNVSEENSVIAKNEGVLEIEDLKTVKGEDSEGNAVDIVISRTSEAKLMHKDTGLLLNTNNIPYGAELFKKPGAKIKKGEVIAKWDPFNGVIISEFSGEIKFENIIQGTTFQVETDEQTGYEEKVISESRDKKLIPTLHIVDGKGETQISYNLPVGAHLMINDGEKIKEGKILVKIPRKSAKAGDITGGLPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVTSKTDEVKKYLVKLSNQILVQENDYVRAGMPLSDGSITPKDILAIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVRQMMRKVRIVDPGDGIFLENQLVHKEDFIQENDRLYGMKVVEDAGDSENLKEGQIVSPRDLRDENSILRREDKNLVVAREVMPATAEPILQGITRASLQTKSFISAASFQETTKVLNEAAVNGKVDTLEGLKENVIVGHRIPAGTGMRNYDDIIVGSKEEFEKLMLNKPEQEVNYN
>NZ_CP011373.1|WP_060523904.1|2082410_2086220_+|DNA-directed-RNA-polymerase-subunit-beta
MLATNTERINFSTVKNKAEYPDLLDIQIKSFQDFFQLETKSDKRENEGLYNTFMENFPITDTRNQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKSRLKLYCTDPEHEDFETIVQDVYLGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGYERDKDILGIFDLAEEVKASKTGLKKYLGRKLAARVLRTWHEDFVDEDTGEVVSIERNEIVLDRDTVLEKEHIDEIIDSQAKTILLHKEDMMSADYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGDVGRYRMNKKLGLDIDMSKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSSQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFAKVNNMGFIETPYRKVENGVINTSEEPIYLSAEEEEGMHIAQANLPLENGKIESDKVIARLEGDFPVVEPDQVQYADVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRVDSPIVGTGLERQVASDSRVLINAEGDGEVVYVDAQKIVIRYDRTERERMISFDPEDTSYNLIKFRKTNQGTSITLKPIVQKGDRVEKGQVLCQGYATEKGELALGRNMKVAFMPWKGYNFEDAIVISEKVVREDLFTSIHVDEYSLEVRDTKLGNEELTADIPNVSEEATANLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSRAVKDKRKRAQDKEDIARLEQSYQAKFDGLRDRLVEKLFEIVSGKTSQGVYNDLGEEVLPKGKKYTLKMLNSVDDYTHLISGTWTTSDEINETVADLLHNYKIKENDLQGALRREKFTISVGDELPAGIIKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVREEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGQKLGKKFATPIFDGATLDQINELTDNAGIPRFGHTYLFDGGTGERFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGEPMPEPGLPESFNVLMHELKGLGLDLRLED
>NZ_CP011373.1|WP_042279757.1|2081907_2082285_+|50S-ribosomal-protein-L7/L12
MADLKEFAEQLVNLTVKEVNELADILKDEYGIEPAAAAVAVAGGAAAGGGDAAEEQTEFDVILKAAGASKLAVVKLVKELTGAGLKDAKGLVDNAPSPIKEGVAKDEAEALKAQLEEAGAEVELK
>NZ_CP011373.1|WP_042279754.1|2081343_2081859_+|50S-ribosomal-protein-L10
MTREQKATVIQDLTATLGENSTIYLADISGLNASDTSNLRRACFKANVSIAVVKNTLLAKAMEASDKDFGELPELLKGNTSIMLSEVANAPAKVIKNFRKKSDKPLLKGAYIEEAIYVGDDKLDSLSEIKSKEEMIGEIIGLLQSPAKNVVSALQSGGGKLAGILKTLSER
>NZ_CP011373.1|WP_042279751.1|2080632_2081331_+|50S-ribosomal-protein-L1
MAKLTKNQKAANAKFDKAQSYSLADASKIVKDTSSAKFDESVDLAVRLNVDPRKANQMVRGVVTLPHGTGKDVKVLALVTPDKEEEAKGAGADFVGLDEYLDKIKGGWTDVDVIITMPSVMGKLGPLGRVLGPRGLMPNPKTGTVTMDVAKAVSDVKSGKIDFKVEKNGIVHAAIGKVSFDAEKIAGNARELINTLVKLKPTAAKGVYIKSIHLSSTMGPGVNVDAKRFADD
>NZ_CP011373.1|WP_042280475.1|2142508_2143444_+|type-IX-secretion-system-membrane-protein-PorP/SprF
MKKLIVVFVFFAFAKALTAQQDPQYSQYMYNPIVINPAYAGNRGVASIVGLHRSQWVGLDGAPRTQTLSFHTPIANSRVGLGLSVVNDEIGPADETYVAADFSYTIPVGDEARLSFGLKGGIHVLNVDFNKLNIFDPGDPRLSENVDNRLSPTVGLGLYYHTDRFYVGLSSPNLLQTDHFDEDNDTSSATFIAEERIHLFGTVGYVFDLNDNIKFKPAGLVKMVQGAPLQVDLTANFLFNEKFTVGAAYRWSAAVTGLVGFQISDQMMIGFAYDRETTELGNAIYNDGSYELFLRFELFNSYDRIITPRFF
>NZ_CP011373.1|WP_060523916.1|2143462_2145442_+|OmpA-family-protein
MKYLIVILGLVSTISLAQDRNVIEPDKVYDEYAFIDAQHMYLNMVEDGYGTSNVYKKLGDTYYFNNDYSNSHKWYTKLFENNDGAIESEYYFRYVQSLKAVKDYDKADALLIEYQKIKGADSFTEIFVNDKNYLEMIELQSWRYTIKNLEINSESQEFGTAYLNGSNEVVYASSKDSASMINRRHKWSERQFLDLYVAQIDRTSLELVNPRKFGNGDQKLNTKFHESNAVFTKDGQTIYYTSNNYFNKKYKKSKDEINKLKIFRASKTEDGWGNIEELAINSDEWSTAHPALNKEESRLYFSSDRPGSVTGLDGKSSSDIWYVEIDSTGTLSEPVNLAAVNTIGKELFPFISEKEDLYFSSTGHMGLGGLDVFVTSLAEAHDSEKLKITNVGKPINSSYDDFSFVIKDSTMTGYFSSNRKSGQGLDDIYSLRQNKPLACKDEIVGVVTDEETGELIPGATVVLLDVDNNEVERVIVKKDAAYSFTVLCESTYSIQASKEEYAPADAVTTTPDVIATIDLPISLKRSIDDKIKNLQIGDDLASVLDIPMIYFDFDKSNIRPDAEVELQKVLQFMKAFPTVKVDIRSHTDSRAPDLYNMKLSDRRAKSTRAYLIMKGINADRLTAQGYGEFQLVNECSNGVDCTEEQHQLNRRSEFIVVSK
>NZ_CP011373.1|WP_060523918.1|2145635_2146652_+|LacI-family-DNA-binding-transcriptional-regulator
MITLKDLANTLGVSVSTVSKALKDSPEISQDTIKRVKEIAKELNYRPNTLALSLKNRQTKTLGVIIPDILNPFFANTLYGIEQQANKLGYNIITCISNESFTKENDSINLLSNGSVDGFILSISQETQAKDDLNHLKDLLRQDVPIVMFDRTSQSIECDKVVIDDFMSTFNAVNMFIEEGRKKIILINTLGDLSVAKLRILGYKTALEKSGNTNQEPVIINVDNAKGVREHIKNMCEVHPDVDGVLCIDNKSGLVAVSALNRLNYNIPKDVSIVGFSSEEFSYLSDPVLSTVTQHGEEIGAVAVDMLVDRLTGNKKKPVSTTTVDFTIDHRGTTLKKS
>NZ_CP011373.1|WP_042277354.1|2146750_2147260_+|isopentenyl-diphosphate-Delta-isomerase
MEQVILVNENDEKVGLMEKIEAHEKALLHRAFSVFVVNDKQQIMLQQRALHKYHSPGLWTNTCCSHQRDGETNIEAGKRRLQEEMGFSTELKELFNFIYIAPFDNGLTEHELDHVMIGYYNDEPVINPDEVAAYKWMTAQEIKTHMDENPHEYTAWFKIIFDKYYKFIS
>NZ_CP011373.1|WP_042277355.1|2147256_2147667_+|6-carboxytetrahydropterin-synthase
MRLTAYRKAHFNAAHRLFRPDWSSEQNESIFGKCSNPHFHGHNYELEVGVTGEVDPETGYLIDLKILKDIIKEQVEDAFDHKNLNEEVPEFKTLIPTAEHIAYVIYQKIKPKLDPKYDLSIKLYETPRNFVVYSGD
>NZ_CP011373.1|WP_060523919.1|2147666_2148644_+|class-I-mannose-6-phosphate-isomerase
MKLYPLQFKPIFKSKIWGGDQLNTLKKINPPINQLGESWEISVVPDDESIITNGNYKGQSLTELIEQYPLQLLGATSVNRFGNQFPLLIKYIDAAQDLSIQVHPDDSVAQKKHNSFGKTEMWYIMHADDGARLIMGFNEDCDKDAFAKAIQEKSLLDLLNKQQVKTGDAFFIKPGLIHAIGGGITLAEIQQSSDITYRVYDFDRKDDEGNTRELHIQDTIDVADYNKVKGHHINYNPSKTGSQNLATNRYFKTDYVSFDDHYQINPAQLESFVVLMNVGNTIIDIEVDDENVTLKPVETVLLPASLVAVDLHSATGAKVLQVSIS
>NZ_CP011373.1|WP_042277359.1|2148683_2148950_+|hypothetical-protein
MASIRHLKQDINYVLGDIIDAAIIHQGAHPESDHKKSEEIIDDSIKTFDALIARVNDRSVENRASHLKQVRVDLQNEANQLADRINAL
>NZ_CP011373.1|WP_060523920.1|2148944_2149652_-|DUF4369-domain-containing-protein
MKNLIILILLFAGITACSDSKGTLTVNGNIKGLKQGTVYLQKLVDTTIVNVDSIKIDGEPVFKLTTPLENPEILYLYLDIKDGVKYDDRIQFFAEDTIINIETNLEKFEDNAQITGSKNQDILNIYETNKKPLNQVYTKLVQRSMQLNAMEDVSQEKIDSLTTAYDKYLRKKVLYAINYAQLHKDYEVSPYILVKDAFDAKAELLDSAYQMMPKKIQTSRYGKQLSELIKTNKEL
>NZ_CP011373.1|WP_060523921.1|2149697_2151014_-|DUF819-family-protein
MDIPKIENAAPLITNDAIVFGLLMICLAIVFYASSREDGFWKKFFTYVPALLMCYLLPSFLSTTGIISGESWQIIENGKLVEKESNLYYMASRYLLPAALVLMTLSIDLKAVFNLGSKALLMFLTGTAGIIIGGPLAVLLIGSFIPEAIGGEGTDAVWRGLATLAGSWIGGGANQTAMLEVYEYSQDKYGGMVIVDIVVANLWMAILLFGIGKSQLFDKWTKADNTAIEELKQKVSDYTTAVKREATVTDIFVMSGIGFGAVAVSHLLSEFLSSTFQANESIAGNIYLSFLTSGFFWIIAIATLIGILLSFTPAKRYEGTGASRIGGIFIYILVATIGMKMDLTKIMDNPFIILIGLVWMFFHAMLLIIVAKLIKAPYFFLAVGSQANVGGAASAPVVAAEFHPSLTSVGVLLAVFGYVVGTLGAIACTILMQLAATA
>NZ_CP011373.1|WP_060523926.1|2151074_2152031_-|alpha/beta-hydrolase
MKYFLVFTLFIVSISLNAQDVFSKGQMQKEQIDPTIYNINDNIQGSLLVPDTLQPVPLVIFIAGQGAVDRNGNEPRTRSNHYKQLADSLLSKGIASYRYDKRTLTLMKNRKPTDEVTLNTFITDARVTVKTFNRDDRFSKIYLLGHGQGSLIAMRVYDESISGVISIAGHGQSIDDLIVDQISKEIPGLDKVARATFDKIKKQEKPVKNIERDLWNVANPGIQPFMKSWMKYDPTKLIKKIECPILLLNGDKNRQVSTMQTELLHEASPSSKKVIITGMNYVFKKVGDDEIVAAKSYVEPNFPIHPELINQVHTFVTE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP011373_1	1.1\|218059\|58\|NZ_CP011373\|PILER-CR	218059-218116	58	NZ_CP011373.1	218260-218317	2	0.966
NZ_CP011373_1	1.1\|218059\|58\|NZ_CP011373\|PILER-CR	218059-218116	58	NZ_CP011373.1	219667-219724	2	0.966
NZ_CP011373_1	1.1\|218059\|58\|NZ_CP011373\|PILER-CR	218059-218116	58	NZ_CP011373.1	219868-219925	2	0.966
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2129630-2129693	4	0.938
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2132528-2132591	4	0.938
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2133011-2133074	4	0.938
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2134460-2134523	4	0.938
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2135426-2135489	4	0.938
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2136875-2136938	4	0.938
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2140256-2140319	4	0.938
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2130113-2130176	5	0.922
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2130596-2130659	5	0.922
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2131079-2131142	5	0.922
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2132045-2132108	5	0.922
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2133494-2133557	5	0.922
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2135909-2135972	5	0.922
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2137358-2137421	5	0.922
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2137841-2137904	5	0.922
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2138807-2138870	5	0.922
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2139290-2139353	5	0.922
NZ_CP011373_4	4.2\|2131612\|64\|NZ_CP011373\|PILER-CR	2131612-2131675	64	NZ_CP011373.1	2139773-2139836	5	0.922

1. spacer 1.1|218059|58|NZ_CP011373|PILER-CR matches to position: 218260-218317, mismatch: 2, identity: 0.966

gtaacgaatctggaaactcttacctctattgcgttgaatgctgatgataccaatatcg	CRISPR spacer
gttactaatctggaaactcttacctctattgcgttgaatgctgatgataccaatatcg	Protospacer
** ** ****************************************************

2. spacer 1.1|218059|58|NZ_CP011373|PILER-CR matches to position: 219667-219724, mismatch: 2, identity: 0.966

gtaacgaatctggaaactcttacctctattgcgttgaatgctgatgataccaatatcg	CRISPR spacer
gtaactaatctggaaactcttacctctattgcgttgaatgctgatgatactaatatcg	Protospacer
***** ********************************************.*******

3. spacer 1.1|218059|58|NZ_CP011373|PILER-CR matches to position: 219868-219925, mismatch: 2, identity: 0.966

gtaacgaatctggaaactcttacctctattgcgttgaatgctgatgataccaatatcg	CRISPR spacer
gttactaatctggaaactcttacctctattgcgttgaatgctgatgataccaatatcg	Protospacer
** ** ****************************************************

4. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2129630-2129693, mismatch: 4, identity: 0.938

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
************************************************************

5. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2132528-2132591, mismatch: 4, identity: 0.938

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
************************************************************

6. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2133011-2133074, mismatch: 4, identity: 0.938

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
************************************************************

7. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2134460-2134523, mismatch: 4, identity: 0.938

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
************************************************************

8. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2135426-2135489, mismatch: 4, identity: 0.938

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
************************************************************

9. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2136875-2136938, mismatch: 4, identity: 0.938

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
************************************************************

10. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2140256-2140319, mismatch: 4, identity: 0.938

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
************************************************************

11. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2130113-2130176, mismatch: 5, identity: 0.922

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagatggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
**************.*********************************************

12. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2130596-2130659, mismatch: 5, identity: 0.922

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagatggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
**************.*********************************************

13. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2131079-2131142, mismatch: 5, identity: 0.922

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagacggaaccgatccaaacgatgcatgtagttatgatccatcaagtgtt	Protospacer
********************************* **************************

14. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2132045-2132108, mismatch: 5, identity: 0.922

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagatggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
**************.*********************************************

15. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2133494-2133557, mismatch: 5, identity: 0.922

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagatggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
**************.*********************************************

16. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2135909-2135972, mismatch: 5, identity: 0.922

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagatggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
**************.*********************************************

17. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2137358-2137421, mismatch: 5, identity: 0.922

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagatggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
**************.*********************************************

18. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2137841-2137904, mismatch: 5, identity: 0.922

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagacggaaccgatccaaacgatgcatgtagttatgatccatcaagtgtt	Protospacer
********************************* **************************

19. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2138807-2138870, mismatch: 5, identity: 0.922

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagacggaaccgatccaaacgatgcatgtagttatgatccatcaagtgtt	Protospacer
********************************* **************************

20. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2139290-2139353, mismatch: 5, identity: 0.922

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagatggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
**************.*********************************************

21. spacer 4.2|2131612|64|NZ_CP011373|PILER-CR matches to position: 2139773-2139836, mismatch: 5, identity: 0.922

ccaaatacagcagacggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	CRISPR spacer
ccaaatacagcagatggaaccgatccaaacgatccatgtagttatgatccatcaagtgtt	Protospacer
**************.*********************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

412006 : 422328

Stenotrophomonas_phage(12.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060522702.1\|412006_413197_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	A0A2D2W2B8	Stenotrophomonas_phage	6.6e-09	23.1
WP_060522704.1\|413198_414227_-	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	K7Y9E1	Megavirus	1.8e-42	35.8
WP_060522706.1\|414233_415451_-	UDP-N-acetyl-D-mannosamine dehydrogenase	M1HNJ7	Paramecium_bursaria_Chlorella_virus	2.9e-20	25.3
WP_060524941.1\|415440_416559_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	1.5e-31	30.0
WP_060522708.1\|416630_417908_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA
WP_157539207.1\|417953_418940_-	NAD-dependent epimerase/dehydratase family protein	A0A2K9L0I7	Tupanvirus	1.1e-89	50.8
WP_060522711.1\|418975_419848_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.8e-96	60.8
WP_060522713.1\|419848_420898_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.7e-83	48.0
WP_060522715.1\|420936_422328_-	UDP-glucose 6-dehydrogenase	A0A127AXI2	Bacillus_phage	1.3e-61	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011373

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection