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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012907 Helicobacter pylori strain 29CaP chromosome, complete genome 2 crisprs cas4,cas14j,cas14k,DEDDh 0 1 1 0

Results visualization

1. NZ_CP012907
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012907_1 1334835-1334933 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012907_2 1361646-1361721 TypeV NA
1 spacers
cas14k

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KX119189 Helicobacter phage Pt21299RU, complete genome 21504-21529 0 1.0
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KX119188 Helicobacter phage FrB41M, complete genome 26941-26966 1 0.962
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KX119188 Helicobacter phage FrB41M, complete genome 26992-27017 1 0.962
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KX119194 Helicobacter phage FrG12G, complete genome 27057-27082 1 0.962
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KX119192 Helicobacter phage Pt1918U, complete genome 27116-27141 1 0.962
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KX119192 Helicobacter phage Pt1918U, complete genome 27167-27192 1 0.962
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KX119191 Helicobacter phage Pt4497U, complete genome 27842-27867 1 0.962
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KX119191 Helicobacter phage Pt4497U, complete genome 27893-27918 1 0.962
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KX119190 Helicobacter phage Pt4472G, complete genome 26069-26094 2 0.923
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 MK044829 Streptococcus phage 109751, complete genome 5057-5082 5 0.808
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KY065480 Streptococcus phage IPP40, complete genome 4873-4898 5 0.808
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KY065478 Streptococcus phage IPP38, complete genome 4871-4896 5 0.808
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KY065497 Streptococcus phage IPP61, complete genome 4873-4898 5 0.808
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KY065451 Streptococcus phage IPP9, complete genome 4540-4565 5 0.808
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KY065488 Streptococcus phage IPP50, complete genome 5042-5067 5 0.808
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KJ417497 Streptococcus phage Spn1, complete genome 4976-5001 5 0.808
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KY065467 Streptococcus phage IPP26, complete genome 5042-5067 5 0.808
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KT337341 Streptococcus phage phiARI0131-1, complete genome 472-497 5 0.808
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KT337341 Streptococcus phage phiARI0131-1, complete genome 42311-42336 5 0.808
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 KT337352 Streptococcus phage phiARI0460-1, complete genome 36189-36214 5 0.808
NZ_CP012907_2 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder 1361671-1361696 26 FR671406 Streptococcus phage 040922 35540-35565 5 0.808

1. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KX119189 (Helicobacter phage Pt21299RU, complete genome) position: , mismatch: 0, identity: 1.0

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
gttgtgctagaaagcttgaaacaaga	Protospacer
**************************

2. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KX119188 (Helicobacter phage FrB41M, complete genome) position: , mismatch: 1, identity: 0.962

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
gttgttctagaaagcttgaaacaaga	Protospacer
***** ********************

3. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KX119188 (Helicobacter phage FrB41M, complete genome) position: , mismatch: 1, identity: 0.962

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
gttgttctagaaagcttgaaacaaga	Protospacer
***** ********************

4. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KX119194 (Helicobacter phage FrG12G, complete genome) position: , mismatch: 1, identity: 0.962

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
gttgtgttagaaagcttgaaacaaga	Protospacer
******.*******************

5. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KX119192 (Helicobacter phage Pt1918U, complete genome) position: , mismatch: 1, identity: 0.962

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
gttgcgctagaaagcttgaaacaaga	Protospacer
****.*********************

6. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KX119192 (Helicobacter phage Pt1918U, complete genome) position: , mismatch: 1, identity: 0.962

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
gttgcgctagaaagcttgaaacaaga	Protospacer
****.*********************

7. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KX119191 (Helicobacter phage Pt4497U, complete genome) position: , mismatch: 1, identity: 0.962

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
gttgcgctagaaagcttgaaacaaga	Protospacer
****.*********************

8. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KX119191 (Helicobacter phage Pt4497U, complete genome) position: , mismatch: 1, identity: 0.962

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
gttgcgctagaaagcttgaaacaaga	Protospacer
****.*********************

9. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KX119190 (Helicobacter phage Pt4472G, complete genome) position: , mismatch: 2, identity: 0.923

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
gttgtgttaggaagcttgaaacaaga	Protospacer
******.***.***************

10. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to MK044829 (Streptococcus phage 109751, complete genome) position: , mismatch: 5, identity: 0.808

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
agcgttcttgaaagcttgaaacaaga	Protospacer
. .** ** *****************

11. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KY065480 (Streptococcus phage IPP40, complete genome) position: , mismatch: 5, identity: 0.808

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
agcgttcttgaaagcttgaaacaaga	Protospacer
. .** ** *****************

12. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KY065478 (Streptococcus phage IPP38, complete genome) position: , mismatch: 5, identity: 0.808

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
agcgttcttgaaagcttgaaacaaga	Protospacer
. .** ** *****************

13. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KY065497 (Streptococcus phage IPP61, complete genome) position: , mismatch: 5, identity: 0.808

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
agcgttcttgaaagcttgaaacaaga	Protospacer
. .** ** *****************

14. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KY065451 (Streptococcus phage IPP9, complete genome) position: , mismatch: 5, identity: 0.808

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
agcgttcttgaaagcttgaaacaaga	Protospacer
. .** ** *****************

15. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KY065488 (Streptococcus phage IPP50, complete genome) position: , mismatch: 5, identity: 0.808

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
agcgttcttgaaagcttgaaacaaga	Protospacer
. .** ** *****************

16. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KJ417497 (Streptococcus phage Spn1, complete genome) position: , mismatch: 5, identity: 0.808

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
agcgttcttgaaagcttgaaacaaga	Protospacer
. .** ** *****************

17. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KY065467 (Streptococcus phage IPP26, complete genome) position: , mismatch: 5, identity: 0.808

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
agcgttcttgaaagcttgaaacaaga	Protospacer
. .** ** *****************

18. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KT337341 (Streptococcus phage phiARI0131-1, complete genome) position: , mismatch: 5, identity: 0.808

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
agcgttcttgaaagcttgaaacaaga	Protospacer
. .** ** *****************

19. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KT337341 (Streptococcus phage phiARI0131-1, complete genome) position: , mismatch: 5, identity: 0.808

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
agcgttcttgaaagcttgaaacaaga	Protospacer
. .** ** *****************

20. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to KT337352 (Streptococcus phage phiARI0460-1, complete genome) position: , mismatch: 5, identity: 0.808

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
agcgttcttgaaagcttgaaacaaga	Protospacer
. .** ** *****************

21. spacer 2.1|1361671|26|NZ_CP012907|CRISPRCasFinder matches to FR671406 (Streptococcus phage 040922) position: , mismatch: 5, identity: 0.808

gttgtgctagaaagcttgaaacaaga	CRISPR spacer
agcgttcttgaaagcttgaaacaaga	Protospacer
. .** ** *****************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1332430 : 1363177 33 Helicobacter_phage(93.94%) holin,integrase,transposase attL 1323315:1323330|attR 1354341:1354356
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage