CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013141	Lysobacter antibioticus strain ATCC 29479 chromosome, complete genome	19 crisprs	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG	0	6	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013141_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_1

1132796-1132907

Orphan

Consensus_repeat	Method
GTAGGAGCGGCGTGAGCCGCGACCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013141_1

>merge|NZ_CP013141|1|1132796-1132907|CRISPRCasFinder
GTAGGAGCGGCGTGAGCCGCGACCGCGGGACGCGTAGTAGCAACAACGCCGATGCCTTGCATCGAAGCGGCGTCCTGTCGCAAGGGTAGGAGCGGCGCGAGCCGCGACCGCG

>NZ_CP013141|1|1|1132796-1132907|CRISPRCasFinder
GTAGGAGCGGCGTGAGCCGCGACCGCG	GGACGCGTAGTAGCAACAACGCCGATGCCTTGCATCGAAGCGGCGTCCTGTCGCAAGG
GTAGGAGCGGCGCGAGCCGCGACCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057970934.1\|1128919_1130320_+\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NZ_CP013141.1\|WP_057970937.1\|1131824_1132610_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187602
NZ_CP013141.1\|WP_031372473.1\|1127049_1127388_-\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|223393
NZ_CP013141.1\|WP_057973071.1\|1124999_1126775_-\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577
NZ_CP013141.1\|WP_082638286.1\|1127598_1128741_-\|DUF2891-domain-containing-protein	unknown	unknown	gnl\|CDD\|378592
NZ_CP013141.1\|WP_057970947.1\|1145049_1146678_-\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NZ_CP013141.1\|WP_057970946.1\|1143693_1145028_-\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NZ_CP013141.1\|WP_057970939.1\|1133760_1135650_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057970936.1\|1131187_1131823_+\|FMN-binding-negative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377290
NZ_CP013141.1\|WP_057970945.1\|1141901_1143527_-\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NZ_CP013141.1\|WP_057917928.1\|1130533_1130839_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057970940.1\|1135646_1137863_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372724
NZ_CP013141.1\|WP_031372471.1\|1124248_1124686_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP013141.1\|WP_057970942.1\|1139031_1139937_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP013141.1\|WP_144436356.1\|1133037_1133361_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_144436737.1\|1141134_1141812_-\|DUF4159-domain-containing-protein	unknown	unknown	gnl\|CDD\|379342
NZ_CP013141.1\|WP_057970935.1\|1130838_1131177_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057970941.1\|1137859_1139035_-\|BatA-domain-containing-protein	unknown	unknown	gnl\|CDD\|131281
NZ_CP013141.1\|WP_144436736.1\|1139956_1140922_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP013141.1\|WP_031372470.1\|1124006_1124237_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057970934.1\|1128919_1130320_+\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NZ_CP013141.1\|WP_057970937.1\|1131824_1132610_+\|SDR-family-oxidoreductase	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.75735e-79
NZ_CP013141.1\|WP_057973071.1\|1124999_1126775_-\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	0
NZ_CP013141.1\|WP_082638286.1\|1127598_1128741_-\|DUF2891-domain-containing-protein	gnl\|CDD\|378592	pfam11199, DUF2891, Protein of unknown function (DUF2891). This is a bacterial family of uncharacterized proteins.	8.8272e-175
NZ_CP013141.1\|WP_057970947.1\|1145049_1146678_-\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	8.61986e-102
NZ_CP013141.1\|WP_057970946.1\|1143693_1145028_-\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	2.99063e-67
NZ_CP013141.1\|WP_057970936.1\|1131187_1131823_+\|FMN-binding-negative-transcriptional-regulator	gnl\|CDD\|377290	pfam04299, FMN_bind_2, Putative FMN-binding domain. In Bacillus subtilis, family member PAI 2/ORF-2 was found to be essential for growth. The SUPERFAMILY database finds that this domain is related to FMN-binding domains, suggesting this protein is also FMN-binding.	1.64755e-65
NZ_CP013141.1\|WP_057970945.1\|1141901_1143527_-\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	3.08832e-95
NZ_CP013141.1\|WP_057970940.1\|1135646_1137863_-\|hypothetical-protein	gnl\|CDD\|372724	pfam13779, DUF4175, Domain of unknown function (DUF4175).	2.65422e-09
NZ_CP013141.1\|WP_031372471.1\|1124248_1124686_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	1.85686e-46
NZ_CP013141.1\|WP_057970942.1\|1139031_1139937_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.88744e-28
NZ_CP013141.1\|WP_031372473.1\|1127049_1127388_-\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|223393	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones].	4.21158e-43
NZ_CP013141.1\|WP_144436737.1\|1141134_1141812_-\|DUF4159-domain-containing-protein	gnl\|CDD\|379342	pfam13709, DUF4159, Domain of unknown function (DUF4159). Members of this family are hypothetical proteins.	1.97911e-65
NZ_CP013141.1\|WP_031372470.1\|1124006_1124237_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	7.86149e-39
NZ_CP013141.1\|WP_144436736.1\|1139956_1140922_-\|AAA-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	1.00129e-92
NZ_CP013141.1\|WP_057970941.1\|1137859_1139035_-\|BatA-domain-containing-protein	gnl\|CDD\|131281	TIGR02226, hypothetical_protein-transmembrane_prediction, N-terminal double-transmembrane domain. This model represents a prokaryotic N-terminal region of about 80 amino acids. The predicted membrane topology by TMHMM puts the N-terminus outside and spans the membrane twice, with a cytosolic region of about 25 amino acids between the two transmembrane regions. Member proteins tend to be between 600 and 1000 amino acids in length. [Hypothetical proteins, Domain].	6.30319e-16

>NZ_CP013141.1|WP_057970937.1|1131824_1132610_+|SDR-family-oxidoreductase
MDLNLSGKHALVCGASEGIGRAAAHELALLGCDVTVLARRADALAAVAQALPRSGAQAHGWIAADVADTAALAAQVEALAAGKPVQILVNNTGGPPGGPAHTALDDAYLDAFQRHLLANQTLVRAVLPGMRSAQWGRVVNVISTSVKEPIVGLGVSNTIRGAVASWAKTLSRELGADGITVNNVLPGYTQTARIEQIIGDRARNSGQSQEAVIEAMRKTVPANRFAEPGEIAACIAFLCSPAAAYVNGVSLAVDGGRMQSI
>NZ_CP013141.1|WP_057970936.1|1131187_1131823_+|FMN-binding-negative-transcriptional-regulator
MYLPRAFAETDLGALDRLADAYDFATLITVRDDAPTVSHLPLLYRRDGEQVELRGHWARPNPQARHAGPALAILQGPHAYVSPGWYTDKESAARVPTWNYAIAHLHGELHTFEDEDGLAQLVDDLSARHEGRIGSDWRFEVEREELRRQLRGIVGFRFKVERIALKFKLSQNHPLANRENVATQLQAQDRDDSRAVAALMRERMALPSSGD
>NZ_CP013141.1|WP_057970935.1|1130838_1131177_+|hypothetical-protein
MTENEYDTHSAPAPGEGQWWLATLGRTVVWARLRVREAGTAEVFDSDANTLSYDSEDTARAALMDAEFVELEGLDEEDAQARGFALDELVPPQAQDDQTLGTLMIQKLPQRH
>NZ_CP013141.1|WP_057917928.1|1130533_1130839_+|hypothetical-protein
MILFLALTFVGIAISAFCAFAIFWPLALVHLRDRHPVLRGELGEAAFANPSAWGWLLRQRYRAASDRNLDGLATPARVSLLIVFASLACAGLLWLLSMMVP
>NZ_CP013141.1|WP_057970934.1|1128919_1130320_+|asparagine--tRNA-ligase
MTVVSVEQALAGKIPAGGEVTVRGWVRTRRDSKAGLSFVNVSDGSCFAPIQVVAPNTLSNYDEEVKHLTAGCSVIATGILVASQGQGQNFEIQASKLEVVGWVENPLTYPMQPKAHTLEYLREFAHLRPRTNLFGAVTRIRHCLSQAVHRYFHENGYYWISTPIITTSDAEGAGQMFRVSTLDLANLPREKDGAIDFSRDFFGKETFLTVSGQLNVEAYCLALSKVYTFGPTFRAENSNTTRHLAEFWMIEPEIAFADLMENARVAEDFLKYLFRAVLDERGDDMAFIAERVQPDAITRLETFVNSPFERIDYTDAISLLQKSGQKFEFPVEWGLDLQTEHERWLTEQHVGRPVVVLNYPEHFKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDTRMAQFGLDPAHYDWYRDFRRYGTVPHAGFGLGFERLVVYVCGLSNIRDAIAYPRAPGSAEF
>NZ_CP013141.1|WP_082638286.1|1127598_1128741_-|DUF2891-domain-containing-protein
MLAMAAAATCAQAAAAAPVPEPLPVVVLDEARAGHFAGLALSCVGREYPNKISHRLEGAKDVAAPSKLYPAFYGCYDWHSSVHGHWLLARLVERFPQAPFAAPARAALARNLTSENIAGELAYLRRSSDETFERPYGLAWLLQLGSQLRGWDDPQARQWAAALEPLEREAAARLLRWLPKLTRPIRVGEHSQTAFAFGLALDWTRRSGDQALRDALVARSRFFYQGDRDCPLAYEPSGQDFLSPCLAEADLMRRVLAPDEYARWLREFLPQVPRRARADWLVPALVLDPEDGKLAHLDGLNLSRAWMLEGIAAGLPPRDRRIRALRAAAAVHRELGLIAVGDSHYAGAHWLGSFATYLMAPPDAAPAPAPSAATGAGRSD
>NZ_CP013141.1|WP_031372473.1|1127049_1127388_-|iron-sulfur-cluster-assembly-accessory-protein
MSVTLAPAALARVQHFLTETPTALGLRFGVTRTGCSGWQHIADLARDEREGDTVFEQDGVRIYVDPISLPLVDGTRIDFLKQGLGEMFVFQNPNAAAECGCGESFTTQADAA
>NZ_CP013141.1|WP_057973071.1|1124999_1126775_-|DUF885-domain-containing-protein
MAAAAPGTAASATRNANAATEALHRLFDDEWERGLRENPEGASFNGDKRYNDRWTDASLSAIQARQESDRQALAKLKSIDRSQLSEADQLNYDVFGWNLGKSIERQKYREYLAPVGQSGGVQTADGLVEGLSFEQVKDYRDWLARMRALPVLIEQNQALLREGAKAGITPPRVLMQRVPGQIAKQIVEDPSKSPFYKPFNRFPDSVPAAERKALQAEAKKVIAETIVPAYREFGSFFEKEYLAAARTSIAASDLPDGKAYYDFLAADFTTTNLSADAIHKIGLKEVARIRADMEKVKAEVGFKGTLAEFFTYLRSDPKFFHKTPAALLEAYQAISKRIDPELVKISKLIPRQPYGVRPIPDNVAPDTTTAYYLPGAVDGTRAGYYYVNLYKPEVRPTWEMMPLSLHEAVPGHHFQFARGLELPDAPMFRRTGYFVAYGEGWGLYAERLGYDMGLYDDPYDRMGQLSYDMWRAVRLVVDTGMHSKGWSRDKAIKFFMDNAPKTEQDVVNEIDRYIGWPGQALAYKIGQLKISELRERSRKALGPAFDLRDFNDEVLSTGSVPLQVLEKHIDTWIAAKKPAPAPKSAGKPKKR
>NZ_CP013141.1|WP_031372471.1|1124248_1124686_-|30S-ribosomal-protein-S6
MRHYEVVFLVHPDQSEQVPAMIERYKSLIEGGEGKIHRLEDWGRRQLAYPIENLVKAHYVLLNIEVTQTVLNELVDGFRFNDAVLRHLVMKRDDADTEQSLIMKFKDEKGDKPERGERGERRRRDDDSETAVGTADNADDNAEAA
>NZ_CP013141.1|WP_031372470.1|1124006_1124237_-|30S-ribosomal-protein-S18
MSKFFRRRKFCKFTAEGVKEIDYKDLNTLRQYLTETGKIVPSRVTGTKSKYQRQLATAVKRARFLALIPYTDNHNA
>NZ_CP013141.1|WP_144436356.1|1133037_1133361_-|hypothetical-protein
MTGKAAKQIKISATATATATATATATATATVERRCAVAVRHRALAKAIEDPEGGAQGCASFFIGTGMSRMKNPCVGIERAGLRFKEKHFSLVTFLLLLMTKESNPPL
>NZ_CP013141.1|WP_057970939.1|1133760_1135650_-|hypothetical-protein
MIGAIDLDTGLQSGLETAVAGLLGFAAVLAMASLILRQYRSGTGARARGWRLALLLIAQPLMAALLYLALFPPLVYSEAGTLVVATAGASASDATIAGETGIALPEAVVSADSERVPDLATALRRHPGTQRLRLLGAGLEPRDRDAARGLTVEWQPTSSPRGLGGLWAPREVAAGAEFSVSGRVEAMPGALVELLDPGLQRVDRSILAADGGFRVGAIARIPGLMNFRLRLRDVRQNVAEEIELPLSVVADTPPRVLVLAGAPSPELKYLRRWALDAGIKLHTQIDVGAGLQLGDAPLSLNAPTLAGFDLVVLDERVWEGLGESQRAALLGAMRDGLGVLLRIGGPLSPRTRTQLRALGFELGAGADSVEVRLPPSSADEEATRARIGPGTIDAPRARDEAMAELPVLNRRALTLDGAGAHSLLRGKDGKAFASWRSTGRGRLGLWTLSDSFRLTLVGRDDLHGQWWSAAFGALARAQPKPVLRIDGEARQGRRVSLCGLSDGALVRTPQGQNIHLLIDPASGSERCAAFWPTEAGWHLLRQGEYSQPFAVRGRDEAPGLRASEMREATLNLMAQARAPTAAASSLANSVASAQVQRGASWPWFLGWLLVSAGVWWLERSRRGRVAQGE
>NZ_CP013141.1|WP_057970940.1|1135646_1137863_-|hypothetical-protein
MTAAAILADKLHSARTRRALDLALCLLPWALVAAAWAWRMQGLVIALAVAAAVGIAVIVVAWRSARRLDHAWLARRLNATRSDMDDSADLLFVSGESLNGLQRLQQARLRERIETANGPELRPAWSARRLLLSALAAALALIAIGLWPRAQSGARDLEALSPAPQVAALPGQPRLIEQGLRIDPPAYTHLPSRSEPTLEGRVPENARLRWNLRFEPQPSAVELVFHDGQRLALARQSDGRWSAERVLAKPALYRIVASGAPEAQTRRLYRLDVTADRAPQLRMLEPDRGLSLMSAGQRGWPLEFEASDDYGLAANAQLRITLAQGSGENITFREQRLSLRGTGTTTQKRYAQRLDLASLGFASGDDLIVQLSVDDNRSPKAQTALSPSLILRWPADLGSEATGLDGMVKTTLPAYFRSQRQIIIDAEALIAQRRKLDEARFIERSDAIGVDQRLLRLRYGQFLGEESEGAPQLPTNDRDEPEPHDEPGQAHDQHAPAEKGQAASSAPEQHDEHAHTPKPAAPSFGEEGPVLEQFGHTHDHAEAATLLDPDTRKLLKAALDEMWQSELHLRQGHPQQALPYAYKALGFIKKVQQATRIYLARVGPELPPIDESRRLSGERAGLARRGERLAAANATDPLLESLWRDLEQSTRTTEPPPIDYTGLQRWLREHESRVPDPLAFAAAFDALRNEPECRRCRAELRRLLWPLLTRPPASVPRRGQGDAVDRRYFEALQQEARR
>NZ_CP013141.1|WP_057970941.1|1137859_1139035_-|BatA-domain-containing-protein
MNLSLLLPAALAALAALLLPLLIHLARRSEQRPTDFAALRWLRQRPKPRHRIRFDEWPLLLLRLLLLALLALWLARPVLFGAESARPWIVVAPGVDTQAARAQAAASDARLHWLAPGFPRLDDAAPDRPVPLSSMLRELDASLPAAAALTVFVPERMGGADGQRPRLSRPVEWRVVPGTMPVATPTSAIAAPSPVVRYADDRAAALPYLRAAIAAWRDPAAGSRSTESVAPSTEAWPADSRELIWLAPGAVPNEVGEFARNGGRVLLDAGSEWPRDASSPRAPLWRDGSGAALVEGVAFGRGRLMRLTRALVPQVMPELLEPGFPQRVRGLFEPTAPAPSRVSAKDHAPAIGAAAYALPPRDLRLWLALLIALVFVLERWLATRARRGATP
>NZ_CP013141.1|WP_057970942.1|1139031_1139937_-|DUF58-domain-containing-protein
MKDFIPPPVRARLRSLRLLSRRAVGTHGIGLHNSRSRGAGLEFAQYRAYEPGDELRQVDWKLYARSDRFFVREAERESPLAVWLLVDATASMNQCDAARPDWSRLDAAKALAACVAELALRQGDRFGLIALREDGVRLVAPATGARQRDRLWLELHALSAQGAWPAAQRLRPLWERIAAGDLVLMLGDGFDDGSDEGAVAIAERLASARREVLSIRILTAEERDFPFRGGYHFRDPETGEELLGDGAALRDEFLVRFAAARKALDARLDASGIRHTEYVLDEALDLPLRRLFGARDMAEPA
>NZ_CP013141.1|WP_144436736.1|1139956_1140922_-|AAA-family-ATPase
MQLDRLGALREAIAQAIVGQHEVVEQLLIGLLAGGHCLLEGVPGLGKTLLVRSLGQALELQFRRVQFTPDLMPSDILGTELLEEDHGTGHRHFRFQPGPIFTNLLLADELNRTPPKTQAALLEAMQERTVSYAGVTHALPAPFFVLATQNPLEQAGTYPLPEAQLDRFLLHIRVGYPSEREEHDILLQTTGSHSAEVPRVMGGEEMIALQARVREVHLADDLLVWITRLVRASRPDDSALPEVRQWVKWGAGPRAGQSLVLAAKARALLHGRYAATREDIVALAAPVMRHRLLLSFAAEAELKSADDVIAALLRGVPFPGA
>NZ_CP013141.1|WP_144436737.1|1141134_1141812_-|DUF4159-domain-containing-protein
MLGGAAGAWLARSPLAQAARADYDFWFTRLKYDSGDWDVDQRMPANLITSLIDYTNLRVDPKEHVLALADPKMLGAPFCYLAGHKLVEFNPDERRNFERYVRNGGFVFVDDCNHDIDGLFAKSFEEQMARIFGAKALRRLPKKHPIYRSFFVFDGPPATGFELNGWGDDLVHDYLQGIEIDGRLGVLYSNKDYGCEWDYDWRNKRFLAEDNTKFAVNIVMYALNS
>NZ_CP013141.1|WP_057970945.1|1141901_1143527_-|TldD/PmbA-family-protein
MQRRDFLSFTGLGLAGLALPYGRAIAAEALLEPADVAHWRRLADTALNAAREGGADYCDVRIGRYLRQSVVTREAQVRNIVNGESAGVGIRVLSQGAWGFAATDASTPDAVAIATRQALAIARANARVQSRKVELAPVAGVGETRWATPLRKNAMAVPIKEKVDLLLGVNAAALKAGADYVNSTLFVINEQKYFASSDGSYIDQDIHRIWLPLTATAVDKVSGKFRTRDGLSAPMGMGYEYLDADPAGKVALPGGLTGYGRSYDVMEDAVAAAKHARAKLKAPSVKPGKYDLVLDPSNLFLTIHENVGHPLELDRVLGYEANYAGTSFATLDKREQGYRYGSELVNFVADKTRPGSLGAVGYDDEGVKTREWDLIRDGILVDYQATRDEAHLLGHKQSHGCSYADSWSSVQFQRMANVSLKPGKQPLSVAEMIKGVERGLYVHGRGSYSIDQQRYNAQFGGQLFYEIKNGQVTGMVEDAAYQIRTPEFWSACVAVCDERDFRLGGSFFDGKGQPSQVSAVSHGSSTTRFNGVNIINTARAL
>NZ_CP013141.1|WP_057970946.1|1143693_1145028_-|TldD/PmbA-family-protein
MSIFTEAEAKAILDKVLALSKADECTATLTGSIAGNIRFALNNVSTSGIVSNSNLAVQSAFGNRVGTASINEFDDAALERVVRRAEDLARLAPENPEFMPAIDKQSYKPSPTFSASTAAITPEFRAQVAADSIAPCRADKLTAAGFLEDGQSFVAVANSKGNFGYQQATNFDYTCTVRTDDGRGSGWVGRNLKDASEFKADNEVRIAMRKATESAEAKALEPGKYTVILEPAAAAGLISFMMNFFDARQADEGRSFLSKKGGGNKLGEQVYDPRVNISADPWDPRAPVLPWDAQGLAREKMAVVENGKVTALDYSRFWAKKQGKRAVGTPGNLLMAGGDKSTAELIKGTQKGILVTRTWYIRMVDPQTVLLTGLTRDGTFYIENGVIKHPVKNFRFNESPVIMLNNIEELGRPVRVAGDESSFVMMIPPMKLRDFTFTSLSDAV
>NZ_CP013141.1|WP_057970947.1|1145049_1146678_-|TldD/PmbA-family-protein
MDRRNFLTMSGLGIAGLMIPYGSAIAAEALLTPLDVAKKKVLADTALTAAKGAGASYCDVRIGRYLRQFVITREDKVQNVVNTESTGIGIRVLVNGAWGFAATNQLNAKSVAEAAQQAAAIARANSKTQTQPVVLAKTPGVGEVAWKTPIRKNAMEVPIKDKVDLLLGVNAAAVKAGADFVNSMLFLVNEQKYFASTDGSYIDQDVHRIWTPMTITAIDKASGKFRTREGLSSPMGMGFEYLDGAASGKTVSPNGVVNYSNSYDMLEDAVAAAKQARQKLTAPSVKPGKYDLVLDPSHTWLTIHESIGHPLELDRVLGYEANFAGTSFATVDKVKSGFKYGSDQVTVFADKTQQGSLGAVGFDDEGVKTKRWNLIKDGILVDYQTIRDQAHILGKSESDGCCYADSWSSVQFQRMANVSLAPGKNKLSVADMIKDVENGIYIVGDGSFSIDQQRYNAQFGGQLFYEIKNGKITGMLEDVAYQIRTPEFWNSCVAVCDESDYRLGGSFFDGKGQPGQVSAVSHGSSTARFNGVNVINTARKLG

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Crispr_ID: NZ_CP013141_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_2

1181633-1181744

Orphan

Consensus_repeat	Method
CTGTCGCGAGAGTAGGAGCGGCGCGAG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP013141_2

>merge|NZ_CP013141|2|1181633-1181744|CRISPRCasFinder
CTGTCGCGAGAGTAGGAGCGGCGCGAGCCGCGACCGCGAGACGCGCAGAGGCAACAACGCCGATGCTCTCTATCGAAACTATGCTCTGTCGCAAGAGTAGGAGCGGCGCGAG

>NZ_CP013141|2|2|1181633-1181744|CRISPRCasFinder
CTGTCGCGAGAGTAGGAGCGGCGCGAG	CCGCGACCGCGAGACGCGCAGAGGCAACAACGCCGATGCTCTCTATCGAAACTATGCT
CTGTCGCAAGAGTAGGAGCGGCGCGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057970962.1\|1183022_1183796_-\|DUF2058-family-protein	unknown	unknown	gnl\|CDD\|225664
NZ_CP013141.1\|WP_057917897.1\|1173153_1174314_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173847
NZ_CP013141.1\|WP_057970958.1\|1167794_1172900_-\|NAD-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|377452
NZ_CP013141.1\|WP_057970963.1\|1184066_1185413_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NZ_CP013141.1\|WP_057970959.1\|1176894_1179597_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NZ_CP013141.1\|WP_031372354.1\|1166816_1167590_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|179876
NZ_CP013141.1\|WP_057970960.1\|1179657_1180392_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057917887.1\|1187643_1188285_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463
NZ_CP013141.1\|WP_057970956.1\|1164882_1166253_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP013141.1\|WP_031372977.1\|1189314_1190199_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP013141.1\|WP_057917896.1\|1174713_1175676_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|369777
NZ_CP013141.1\|WP_057970961.1\|1180667_1181531_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP013141.1\|WP_057970957.1\|1166381_1166810_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239517
NZ_CP013141.1\|WP_057970955.1\|1163409_1164720_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP013141.1\|WP_031372975.1\|1188439_1188934_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_144436359.1\|1185495_1186335_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_CP013141.1\|WP_057917888.1\|1186458_1187403_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_CP013141.1\|WP_057920051.1\|1190258_1191227_+\|ABC-transporter-permease	unknown	unknown	unknown
NZ_CP013141.1\|WP_057917886.1\|1188937_1189318_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP013141.1\|WP_031372970.1\|1183805_1184039_-\|SlyX-family-protein	unknown	unknown	gnl\|CDD\|179141

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057970963.1\|1184066_1185413_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NZ_CP013141.1\|WP_057970962.1\|1183022_1183796_-\|DUF2058-family-protein	gnl\|CDD\|225664	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown].	6.66496e-38
NZ_CP013141.1\|WP_057970958.1\|1167794_1172900_-\|NAD-glutamate-dehydrogenase	gnl\|CDD\|377452	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyze the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.	0
NZ_CP013141.1\|WP_057970959.1\|1176894_1179597_+\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NZ_CP013141.1\|WP_031372354.1\|1166816_1167590_-\|NAD-kinase	gnl\|CDD\|179876	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.	9.73214e-161
NZ_CP013141.1\|WP_144436359.1\|1185495_1186335_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	3.52491e-69
NZ_CP013141.1\|WP_057917887.1\|1187643_1188285_-\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	2.58817e-74
NZ_CP013141.1\|WP_057970956.1\|1164882_1166253_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	7.72255e-141
NZ_CP013141.1\|WP_031372977.1\|1189314_1190199_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.60171e-59
NZ_CP013141.1\|WP_057970957.1\|1166381_1166810_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	5.55817e-19
NZ_CP013141.1\|WP_057917896.1\|1174713_1175676_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.86896e-24
NZ_CP013141.1\|WP_057970961.1\|1180667_1181531_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.83813e-10
NZ_CP013141.1\|WP_057917897.1\|1173153_1174314_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	2.9738e-178
NZ_CP013141.1\|WP_057970955.1\|1163409_1164720_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.16194e-37
NZ_CP013141.1\|WP_057917888.1\|1186458_1187403_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	3.59196e-64
NZ_CP013141.1\|WP_057917886.1\|1188937_1189318_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	6.62123e-32
NZ_CP013141.1\|WP_031372970.1\|1183805_1184039_-\|SlyX-family-protein	gnl\|CDD\|179141	PRK00846, PRK00846, hypothetical protein; Provisional.	8.79702e-18

>NZ_CP013141.1|WP_057970961.1|1180667_1181531_+|alpha/beta-hydrolase
MQDLLLFSHANGFPAPVYRVMLAALAERFHVVRPERIGHDPRYPVTPDWPHLVEELVARAENAAGNARRIWLVGHSLGGYLSLLAAHRLADSALAGRVAGVVMLDSPLIAGWRARLVSIGRRTGLDNLLMPMRATLQRRRLWPDRTAVREHFLAKPAFACWDQRVLDDYVEHGTRAAADGSRELAFEREIEYRIYHTLPTTALSGLAPSVRVPVGFLAGTRSRELRNAGSAPTQRLVGERWRWIEGGHLFPMERPLDTAQAIAAMIEGMRPAVADEDQASWAQAVNG
>NZ_CP013141.1|WP_057970960.1|1179657_1180392_+|hypothetical-protein
MSEILIPGGYEIEAAGERAGDALGNAAFIEKHAAPGRIGLCGGRDWINKLIRKAQSPLTEDGHRSLWSHAFVFSERRIDGQWWVIESDLDLRYKQIRLGVQENRVDRYYDAEAFPNIAILDFDLSPEQVRKIQIAGLDLLSGLSSYSISELVGTLMAMHSRRLRRRSNLLAKEGALYCSALVQHCYHAAGVEFLPGVPGKNIAPHDIDESPLPHRTHRIIRDLGVSTIRELGHKSKHWLSSALD
>NZ_CP013141.1|WP_057970959.1|1176894_1179597_+|methionine-synthase
MTALPRQTRLSGLEPLQITPESNFVNVGERTNVTGSAQFRKLITEARYDEAVVVARQQVENGAQVLDVNMDEGLLDSEQAMVTYLNLIAAEPDIARIPVMVDSSKWTVIEAGLKCLQGKGIVNSISMKEGEAEFLRQARLVRRYGAAVVVMAFDEVGQADTIDRKVEICTRAYKLLTERIGFPPEDIIFDPNVFAVATGIEEHNNYAVDFIEATRELKRRFPYSHISGGVSNVSFSFRGNEAVRQAIHTVFLYHAIKAGMDMGIVNAGGLPLYDDLDSELREAVEDVVLNRRDDSTERLLTLAERYKGKKGEKKVEDLAWRDKPVRDRLSHSLVHGIDQWIEEDAEAARAESTRPLDVIEGPLMAGMNVVGDLFGAGKMFLPQVVKSARVMKKAVAYLLPYIEAEKLRTGDAGKSNGKIVMATVKGDVHDIGKNIVGVVLACNNFDVVDLGVMVPAQTILDRAKAENADLIGLSGLITPSLEEMSHVAREMQRQGFTMPLLIGGATTSRAHTALKIDPHYKSPTIWVKDASRAVGVAQSLISIELREPFVAANASDYAEIRERHRNRGDGKRLVSLEKARGQRFDGHWSEYEPPAPLQPGLHVFDDYPLDELVEYIDWTPFFNTWELAGRYPAILTDEIVGTQASELYRDARAMLKQMVAEKWVQAKAVFGLWPANSVGDDVEVDHVDGDGKRSSVRLHFLRQQVDKPVDRPDLCLADFVAPKDSGRQDWIGGFAVTSGIGIEPHVARFEADHDDYNAIMLKALADRFAEALAERMHQRVRKEFWGYAADETLDNEALIDEGYRGIRPAPGYPACPEHSEKGTLFRMLDATRHTTLELTESFAMYPTAAVSGLYFSHPDSQYFVVGRVSKEQVEDYARRKGATLAQAERWLASNLDYDPE
>NZ_CP013141.1|WP_057917896.1|1174713_1175676_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MDLEGWSSRLKVFADATRVRLLALLEGEELTVAELSAITRLAQPRVSTHLSKLKEAGLVRDRRAGVSAYYRFDDGALDQAQRALWQTLSTGSDDPLLRQDAERVAAVLAMRASDQNWADSVAGDMERHYSPGRTWEALARSAVPLLQPGDVLDIASGDGVLAELLAPHSNRYVCLDASTKVVAAASERLRKLRNVEVREGDMHALPFEADSFDLVVLMHALTYAEHPAQAVAEAARVLRPGGRLLLTSLAAHEHRGAVEAFGHVNLGFAEKDLQKFASKAGFDIVSCETVTRERRPPHFEVIALMARKPAAEPARKPAKK
>NZ_CP013141.1|WP_057917897.1|1173153_1174314_-|acyl-CoA-dehydrogenase-family-protein
MDFGFTEEQLMIQDVARRIAQEKIAPSAEHHDQTGEFPLENIRTLGENGLMGIEVPAEYGGAGMDPISYVLAMVEIAAGDAAHSTIVSVNNSLFCNGILKFGTEAQKQLYVRAIAEGREIGAFALTEPQSGSDATAMRCKAVKQADGSFVINGKKSWITSGPVAKYIVLFAMTDPDKGARGITAFMIDTSKPGFHRGKTEPKLGIRASATCEIEFEDYVAAPEDVLGEEGHGFKIAMGVLDAGRIGIASQAIGIARAAYEATLTYVRERKAFGQPIGAFQMTQAKIADMKCKLDAALLLTLRAAWKKAETEKNGGRFSNEAAIAKLTASEAAMWIAHQAVQIHGGMGYSKEMPLERYFRDAKITEIYEGTSEIQRLVIARNETGLR
>NZ_CP013141.1|WP_057970958.1|1167794_1172900_-|NAD-glutamate-dehydrogenase
MSNKPKAASKQEPAKQASAKKAGQPAAKTVAAKPAATKPAATKSAAAKSATAKSVAAKPAAKSVAPVEAQSASVSLEPIVAAMRKRLPKARHAEAEAFAKAFYKRMSLDELPQHQADGWAALATDFLDYARDRKPGNALVRLFNPTIKTHGWESAHTVLQIANDDMPFLVDSVTMALADQGIGVHVLGHPVVTFQRDKAGKLVSVGQGVPESLMHLEIDRLTNESMASAKKALETVLADVRAIVRDWSQMRDKMNEVADGMIGERMPVNEDGKREAQAFLHWAAENHFTFLGYREYEVIKHDGQDVLSAIKGSGLGLLRGKDAGKPRPLTSLAAHYIPQSGSVDALILTKTNARSTVHRPGYMDYIGVLSFDDKGRPVAEKRFLGLYTSSAYNRRPWDIPLVRQRHAYVMEQSGLAPDSHSGKALRHVLETLPRDELFQSSEEELFKTTSGILGLQERVRSKMFLRRDRYGRFFSGLVYIPRDRFNTDVRLRVEAMLKRRLHGEYIDTTVHIGESPLAQMHVIVRPKSGEAIQIDHVAIEAELTEIVRNRQDELRDALVQRHGEQQGLALANRYGRALPAGYIEEVSAGVAAQDIAHLAALSGPDDLRLSLCRTRQGEGGLRFKFYRQLDDIPLSDALPMMENMGLRVISEHPYRLRVDEQPVYIQDFEVETANNDIDIDSLDENFEDAFAQIWRGNAENDGFNRLILTANLSWRQVAMLRAYCKYLLQVGVPFSQSYVEETFSRYPLLARLLVELFEARFDPCTGKESKAEIKAGQDLLVQQLQALSGGDAAVMAAVKPVIDARNGKRDEQAKATVDAIKALLDRVSSLDEDRILRSFIGVINATLRTSYYQRAADGADRGYVSYKFDSAQVPDLPKPRPYREIFVYGPRVEGVHLRFGPVARGGLRWSDRREDFRTEVLGLVKAQMVKNTVIVPVGSKGGFFAKRPPAGGDRDAVLAEGIACYKMFINGLLDITDNIVDGKIVAPRDVVRHDQDDPYLVVAADKGTATFSDIANGIAAEHKFWLDDAFASGGSVGYDHKGMGITAKGAWESVKRHFRAMGHDSQTQDFTAVGIGDMSGDVFGNGMLLSEHIRLIAAFDHRHIFLDPNPDAAKTFKERERMFKLPRSSWDDYDKKLIGKGGGVYPRSAKSIPLSPEIKAALGIDAGVAAMSPVELMSAILKSPVDLLWNGGIGTYVKFSGETNSDVGDRANNGLRVDGRDLRCKVVGEGGNLGLTQLGRIEAAQHGVLLNTDFIDNSAGVDTSDHEVNIKILLNGQVQAKKLTLPDRNKLLASMTDEVAELVLNDNYRQNQAISLMERMSQSRLGSKQHFIRTLEAQGLLDRQIEFLPSDAEISERKARGQGLTRPELSVLLSYSKLVAFQQMLDSDVPEDPYLSKELVRYFPQPLQSKYAKAMENHRLKREIIATAVTNSTINRMGATFLLRMQEDSGRTPGEVAKAFTITRETLDARDLWAQIDALDGKVAESTQIDALQVIWNLQRSFTRWLLSRPGTIPDITTAVERYHDGFKNIRAGHGILGDGQRPAHDAAFADWKAKGVPEALSAQLAALPYLEPSCDIIELARERKLKPVEVAKVHFRLGEALRLPWLQEQIDALTVDGRWHAVARGVLREELGAQQRILVGQVLSMPGANADAKIKHWLGRDDVSLRFTLAMLNELAAQKSLDYPTASVAVQRLSQLAARG
>NZ_CP013141.1|WP_031372354.1|1166816_1167590_-|NAD-kinase
MTATQRIAFLASHTDEAQRALADLVARHGQHEPDAADVLVALGGDGFMLQTLHRHGGLGKPVYGMKLGTVGFLMNQHNGEDLFARLEAAEPAVLRPLEMVAQTESGATFGSLAYNEVSLLRQTRQAAHIRIDLNGQTRLDELICDGVLVATAAGSTAYNFSAHGPILPLGSAVIALTPIAAFRPRRWRGALLKADTEIRFRVLDPYKRPVSATADSHEVRDVVEVMIRESRDRTVTLLFDPEHNLEERMLIEQFTSG
>NZ_CP013141.1|WP_057970957.1|1166381_1166810_+|NUDIX-domain-containing-protein
MSAGEHGIDLVGALLWRQGRVLLGLRAAHKRLAPNCWDMLGGHVEAGETPERALWRELQEEAGIGPPVLATSDEHCATAASVVAELAFDGLVLRVYRIDAWDGEPEARGDEHQHLQWFEPTQAAALPDLADPRLREVLLRLL
>NZ_CP013141.1|WP_057970956.1|1164882_1166253_+|amino-acid-permease
MNGAAASQLGHALKSRQLVMMGLGSAIGAGLFLGSGVGIRSAGPAVLLSYLIAGALVIIVMRALGEMAAARPTSGAFSVYAADAMGPTAGATLGWLWWAQLVIVIAAESVGAAGLLATVWPQLPVALMSLVFMSVFTGVNLLGVRNFGEFEFWFAILKVAAILAFIAIGVLLVCGLLPNVPSPGLSNFFDHGGFAPKGWAGVGAALLVVVFAFGGTEIVAVAAAETQDPERSITHAIRTVAWRILVFYIGSLAVIIAVVPWTSESLNSPFAAVLEVARIPGAATAITLVAVVALLSALNANLYGASRMIYSLAERGEAPRALAHLSRSRVPTVAVLASVAFGFVATALELLYPDKVLPTLLNVVGSTCLLVWALSLVSQLILRRRADRAGTVLPFKMWAFPYVTWAGLAILGLVFVLALSIEGPRLQLLSTIALTLLIAAASEVARRMRNKTVGNN
>NZ_CP013141.1|WP_057970955.1|1163409_1164720_+|HAMP-domain-containing-histidine-kinase
MLAFAGFALSVAALFGLYAVSFMYATEDAFFDSMLEQEAAAQLRRHALDGGWAEPQQAFMRVYPDTQHFPADLLAARESEPWRSEFAGRDGRHYHVKALQPPAPAQGAWLVAEVSRQLVVRPMRDRILQWLGWSALAVVALALSIGAWLARRSTAPLSRLAALVDSMAPNRWPQRIAAGFPDDEVGVLARGLDAMTERTQAFIDREQAFTRDASHELRTPLAVIRSAGERLLAEPALSAAGREHLLHLRQSAWQLEQTVTTLLTLAREAPVVLPDAPIALLPVLERVVLEQAVWLDGKPVEVEVEVPADARIDLPQPVLHILLSNLIGNAFAHTESGTVAIGVAGGCLRIANRGHPIPAELRERLHEPFRKREGSAGLGLGLAIVQRLCERYRVDLRLDEEAGAMVVSLALAGAAGPPQGAPGTARPAEDSAARSD
>NZ_CP013141.1|WP_057970962.1|1183022_1183796_-|DUF2058-family-protein
MSDTLRDQLLGLGFKPAPKPERPERSERSGDPKRGGKPGERPGAARHDARKPGERGARPHGERPGAGKPGADRPGSERPNANRPQGQRPGAGKPGQGRPGANQGSGRPGQGKPRTREDIDLAKAYAIRAQREKDERIAAEQAKQEEARLRREARAKLAEALKDQALNAPDAEIARHFPYGGKIKRVYVTEAQLKQLNAGELGVVQLEGRYVLVTAAMLEQAEAIFAPAVALKVDPNAPAEDDPYADPLYQVPDDLVW
>NZ_CP013141.1|WP_031372970.1|1183805_1184039_-|SlyX-family-protein
MTSELEQRLIDLETRVAFQEHALNELSDALAAARSEEARNSLLMYRALDEIKQLRSAMAATPLTGGDAAGEPPPPHY
>NZ_CP013141.1|WP_057970963.1|1184066_1185413_-|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MRVTIFGTGYVGLVTGTCLADVGHDVVCVDIDQAKIEGLERGVIPIYEPGLEPMVKANHAAGRLHFTTDAAAAIAHGDLIFIAVGTPPDEDGSADLKYVLAVATTIGRHIERQVVVVNKSTVPVGTADKVHATIVRELQARGVDVAFDVASNPEFLKEGDAVNDCMRPDRIVIGASSPVALEKLKRLYAPFNRNHERIVYMDLRSAELTKYAANAMLATKISFMNEMANIAEKVGADIEMVRHGIGSDPRIGWHFIYPGAGYGGSCFPKDVQALARTAQQHGYQARLLDAVEAVNDSQKGHLFELIQRHYGGDIAGKTFAVWGLAFKPNTDDMREASSRTLLNQLWDAGARVRAYDPEANEEAERIFGEREDLALCDSARAALADADALVVVTEWKQFRSPDFVRVRQALADGVIFDGRNLYHPDEVEAADLAYYGIGRGRSILIDGD
>NZ_CP013141.1|WP_144436359.1|1185495_1186335_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MRNTALAFAVASMALFASGCNQAGKPADGKAADAKPGDKADAKSDVKALGGMKTEKEQESYLIGMDMGRSLELLKDDLDLAVLQKAMQANMKGDKPLLSDDEARQIRERLQEKVRTKQIEKMVAMAKKNQEEGDKFLAANGKKPGVVTTASGLQYQMVTEGKGAKPKSSDTVRVHYKGTMLDGKTFDSSYDRKEPAVFPLGAVVPGWQEGIALMPVGSKFKLWIPSKLGYGEQGTPGGPIGPNATLVFDVELLDIVKPGAGGPAGGPESAAMGGTHPQH
>NZ_CP013141.1|WP_057917888.1|1186458_1187403_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MKAFVRGAAVLITTAALFSGVASAQDKTVLANDREKISYAIGLDVASSLKPVGPDLDTAAFERAVKNVFDGGKPLITQEEARTVDQALRARIASRDGKPVPGAAPGAPPPPVAKDKVGLLIGTFMVGPSLQQIKSEIELPLLVQALRTSLSGGKPLLAEAEARTVLTGFSERLQAKMKAEAAAAGDANLKKGKDFLETNKKVKGVFVTGSGLQYMVLRQGSGERPKPTDKVSVNYKGTLLDGSTFDSSYDRGQPAEFPVNGVIQGWQEGLAMMPVGSKFKFWIPAELAYGPSGAPPKIGPNATLEFEVELLDIL
>NZ_CP013141.1|WP_057917887.1|1187643_1188285_-|glutathione-peroxidase
MTSSLPRSGLARCAGPVALLSLVLAAGAAVAAGGSMLDRSFRPLAGKTAVNLGARYGGDVVLVVNTASKCGYTPQFEALEGLQAKYKGKGFAVLGFPSGDFKAQEFEDEKQIQEFCTLTYGVKFPMFEKVHVIGEQATPLYKDLAKAAGEAPKWNFHKYLLGRDGRLIASYGSKTTPDDPAVVAAIERALAVPRPKAAKAPATAAAPQPAAAR
>NZ_CP013141.1|WP_031372975.1|1188439_1188934_+|hypothetical-protein
MNRKLHNSISALMAAGGALVLGLVVAFPSPAPVASAAPELAMLAGDAVATRPIQVELGQIKAQISFDRDFVARARSRQTDVATIARRIEASADRLGQDASAAEVSLFVAGIASEVADLTAIANAVEPLVAAEPASTETKRKAGTAARRNRRNLVMPYFSFLPRG
>NZ_CP013141.1|WP_057917886.1|1188937_1189318_+|GntR-family-transcriptional-regulator
MTAIQWSDGAPIYRQLKERVIAMMLDGVLKPGDALPSVRQVAAEYQLNPITVSRAYQELADEALVEKRRGLGMYVTEEAARKLLVNERERFLREEWPLVLERIQRLGLSNEELLGARTGNDKADAP
>NZ_CP013141.1|WP_031372977.1|1189314_1190199_+|ABC-transporter-ATP-binding-protein
MTNAIHIDPGHIVTARGLRKVYKNKLALDNAAFDIPAGRIVGLIGPNGAGKTTALKAILGLIAFDGELSVLGRDPRHERDALMRDVCFIADVAVLPRWLRVREAIEFVAGVHPRFDRAKCERFLHGTQLKPNLRVREMSKGMIVQLHLALVMAIDARLLVLDEPTLGLDILYRKQFYQRLLEDYFDENKTILVTTHQVEEIEHILTDVMFIRDGKVVLDSPMEVLGERFIEVLVNTDSAAQARALKPLDERSLPFGKTVMLFDGVPAEQLAGFGEVRTPGLADLFVATMKGTYA
>NZ_CP013141.1|WP_057920051.1|1190258_1191227_+|ABC-transporter-permease
MQTFKMLLRREFWEHRGGFFWAPVITGLVAIVFSLFGVVASSIMLQSAIRRGDVHMDGVNINVSGHESAFGLAGDIALLSGMGLACVVFVFVVFFYALGSIYDERKDRSILFWKSLPVSDTQAVLSKLLWALVLAPVLAIGIGLAVGAVMWLLSWVAVLLNGVPGASGVFTEAHPLRLVLQILCSIPVYALWALPTVGWLMLCSAWARSVPFVWAVVIPLLACMFISWLDILPGIEIPHDAIWYTVAFRGLLSIVPGSWYLSPQINGVDTNSVINGPEDIARAIDFTSSLQAFATADLWVGAVLGALMVYAAIRLRRWRDEG

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Crispr_ID: NZ_CP013141_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_3

1245781-1245977

Orphan

Consensus_repeat	Method
TCTGCGCGTCCCGCGGTCGCGGCTCGCGCCGCTCCTACCC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013141_3

>merge|NZ_CP013141|3|1245781-1245977|PILER-CR
CGCGGTCGCGGCTCGCGCCGCTCCTACCCTTACGACAGCTCACGTCTTCGACCATCGACGGAGGCGTTGTGGACTCTGCGCGTCCCGGGGTCGCGGCTTGCGCCGCTCCTACCCCTGCGAGGGTACGCCGCTTCGATGAACGGCATCGGCGTTGCGGCTTCTGCGCGTCCCGTGGTCGCGGCTCACGCCGCTCCTAC

>NZ_CP013141|3|1|1245781-1245977|PILER-CR
CGCGGTCGCGGCTCGCGCCGCTCCTACCCTTACGACAGCTCA	CGTCTTCGACCATCGACGGAGGCGTTGTGGACTCTGCGCGTCCC
GGGGTCGCGGCTTGCGCCGCTCCTACCCCTGCGAGGGTACGC	CGCTTCGATGAACGGCATCGGCGTTGCGGCTTCTGCGCGTCCCGT
GGTCGCGGCTCACGCCGCTCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057917860.1\|1240832_1241549_-\|DUF3011-domain-containing-protein	unknown	unknown	gnl\|CDD\|371422
NZ_CP013141.1\|WP_057970983.1\|1242648_1245180_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP013141.1\|WP_057917853.1\|1259289_1261353_+\|TerD-family-protein	unknown	unknown	gnl\|CDD\|132992
NZ_CP013141.1\|WP_057970980.1\|1229416_1230967_+\|peptidase-M4-family-protein	unknown	unknown	gnl\|CDD\|225768
NZ_CP013141.1\|WP_082638293.1\|1231830_1233801_+\|M4-family-metallopeptidase	unknown	unknown	gnl\|CDD\|225768
NZ_CP013141.1\|WP_057970982.1\|1241665_1242652_-\|EF-P-lysine-aminoacylase-GenX	unknown	unknown	gnl\|CDD\|273090
NZ_CP013141.1\|WP_057970984.1\|1246981_1250485_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_CP013141.1\|WP_057970986.1\|1257885_1259130_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340891
NZ_CP013141.1\|WP_057970981.1\|1233933_1234293_-\|DUF1428-domain-containing-protein	unknown	unknown	gnl\|CDD\|377795
NZ_CP013141.1\|WP_057917852.1\|1261468_1262026_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057917862.1\|1238673_1239732_-\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235578
NZ_CP013141.1\|WP_057970987.1\|1262048_1262369_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_144436361.1\|1252049_1255127_+\|beta-phosphoglucomutase	unknown	unknown	gnl\|CDD\|224471
NZ_CP013141.1\|WP_057917861.1\|1239888_1240659_-\|DUF3011-domain-containing-protein	unknown	unknown	gnl\|CDD\|371422
NZ_CP013141.1\|WP_057917858.1\|1246035_1246806_-\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|235308
NZ_CP013141.1\|WP_057917850.1\|1262630_1263725_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP013141.1\|WP_057920043.1\|1250882_1251842_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380518
NZ_CP013141.1\|WP_082638294.1\|1234690_1235284_-\|polyisoprenoid-binding-protein	unknown	unknown	gnl\|CDD\|225228
NZ_CP013141.1\|WP_057973074.1\|1255248_1257636_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP013141.1\|WP_082638976.1\|1235488_1238143_-\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057917860.1\|1240832_1241549_-\|DUF3011-domain-containing-protein	gnl\|CDD\|371422	pfam11218, DUF3011, Protein of unknown function (DUF3011). This bacterial family of proteins has no known function. Most members belong to Proteobacteria.	2.42257e-50
NZ_CP013141.1\|WP_057970983.1\|1242648_1245180_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP013141.1\|WP_057917853.1\|1259289_1261353_+\|TerD-family-protein	gnl\|CDD\|132992	cd06974, TerD_like, Uncharacterized proteins involved in stress response, similar to tellurium resistance terD. Tellurium resistance terD like proteins. This family is composed of uncharacterized proteins involved in stress response, such as the tellurium resistance proteins, chemical-damaging agent resistance proteins, and general stress proteins from a variety of organisms. The tellurium resistance proteins are homologous terA,-D,-E,-F,-Z,-X gene products, which confer tellurium resistance mediated by plasmids. Currently, the biochemical mechanism of tellurium resistance remains unknown. The family also contains several ter gene homologues, YceC, YceD, YceE, for which there is no clear evidence for any involvement in the tellurium resistance. A putative cAMP-binding protin CABP1 shows a significant similarity to the terD protein and is also included in this family.	1.82117e-19
NZ_CP013141.1\|WP_057970980.1\|1229416_1230967_+\|peptidase-M4-family-protein	gnl\|CDD\|225768	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism].	1.09128e-115
NZ_CP013141.1\|WP_082638293.1\|1231830_1233801_+\|M4-family-metallopeptidase	gnl\|CDD\|225768	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism].	8.71309e-127
NZ_CP013141.1\|WP_057970982.1\|1241665_1242652_-\|EF-P-lysine-aminoacylase-GenX	gnl\|CDD\|273090	TIGR00462, genX, EF-P lysine aminoacylase GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. [Unknown function, General].	2.76613e-138
NZ_CP013141.1\|WP_057970984.1\|1246981_1250485_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_CP013141.1\|WP_057970986.1\|1257885_1259130_+\|MFS-transporter	gnl\|CDD\|340891	cd17333, MFS_FucP_MFSD4_like, Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins. This family is composed of bacterial L-fucose permease (FucP), eukaryotic Major facilitator superfamily domain-containing protein 4 (MFSD4) proteins, and similar proteins. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. The MFSD4 subfamily consists of two vertebrate members: MFSD4A and MFSD4B. The function of MFSD4A is unknown. MFSD4B is more commonly know as Sodium-dependent glucose transporter 1 (NaGLT1), a primary fructose transporter in rat renal brush-border membranes that also facilitates sodium-independent urea uptake. The FucP/MFSD4 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.97679e-27
NZ_CP013141.1\|WP_057970981.1\|1233933_1234293_-\|DUF1428-domain-containing-protein	gnl\|CDD\|377795	pfam07237, DUF1428, Protein of unknown function (DUF1428). This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown. The structure of this family shows it to be part of the Dimeric-alpha-beta-barrel superfamily. Many members are annotated as being RNA signal recognition particle 4.5S RNA, but this could not be verified.	1.33705e-57
NZ_CP013141.1\|WP_057917862.1\|1238673_1239732_-\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|235578	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed.	0
NZ_CP013141.1\|WP_144436361.1\|1252049_1255127_+\|beta-phosphoglucomutase	gnl\|CDD\|224471	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism].	0
NZ_CP013141.1\|WP_057917861.1\|1239888_1240659_-\|DUF3011-domain-containing-protein	gnl\|CDD\|371422	pfam11218, DUF3011, Protein of unknown function (DUF3011). This bacterial family of proteins has no known function. Most members belong to Proteobacteria.	7.0919e-55
NZ_CP013141.1\|WP_057917858.1\|1246035_1246806_-\|cell-division-protein-ZipA	gnl\|CDD\|235308	PRK04570, PRK04570, cell division protein ZipA; Provisional.	2.43587e-118
NZ_CP013141.1\|WP_057917850.1\|1262630_1263725_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP013141.1\|WP_057920043.1\|1250882_1251842_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380518	cd06295, PBP1_CelR, ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	3.63871e-107
NZ_CP013141.1\|WP_082638294.1\|1234690_1235284_-\|polyisoprenoid-binding-protein	gnl\|CDD\|225228	COG2353, COG2353, Uncharacterized conserved protein [Function unknown].	2.18615e-52
NZ_CP013141.1\|WP_057973074.1\|1255248_1257636_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	6.04988e-41
NZ_CP013141.1\|WP_082638976.1\|1235488_1238143_-\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0

>NZ_CP013141.1|WP_057970983.1|1242648_1245180_-|NAD-dependent-DNA-ligase-LigA
MTTESKQDAAQAAKRAAELHRQLEDANYRYYVLDDPTLADADYDRLLRELEALEAAHPDLATPDSPTQRVGTAPSGAFDEVRHAVPMLSLGNAFADEEVADFVRRIEERLDCSAPAFSVEPKLDGLAISLRYEGGRFVQGATRGDGATGEDVTQNLRTINAIPMRLRGEHWPPVLEVRGEIYMPLAAFKAYNEKALGEGGKVLANPRNGAAGSLRQLDPRITKQRPLAFYAYAVGLVEGYELPPTHSATLKQLRDWGFPVSTESGVVAGTDGLLGYYRQMGAKRDALPFDIDGVVYKLDDYAGQREMGFVSRAPRWAIAHKFPAQEQSTVLEGIDIQIGRTGAATPVARLKPVQVAGVVVTNATLHNADQIARLDVRIGDTVIVRRAGDVIPEIVRVVPEYRDPNAPQWQMPGECPVCGSEIVREEDGVVWRCSGELTCAAQRKEAIRHFASRRAMDIEGLGEKFIDLFVETEVVKSPADIYALTLDDLILVKLVLDANPSTVDSSLRMHLSAEQGVEAAKLFEDPSAFRLDNLVDVDGDEWRPDGRQYVIRLVRDHKVRFEWNRKKVATKWADNLIEAIDHSRSTTLERFLFALGIQHVGESTAKALSVWFGDLELIRRLPWPLFKRVPDVGGEVARSLGHFFDQPGNQQVIDDLLERKVKIGDTHAPSPKLRESLNLATLLVDMEIPKVTRIRADQLAAAFGSAEKLRDAPEHAYITAGLPADSAQALTTWLNVDENARLLTRVGEALARLDALTPAASAAASGPLDGQTAVLTGSLTALTRDEAKLRLEALGAKVAGSVSKKTSFVVAGEAAGSKLDKAQELGVEIWDEAKLLAFLAEHE
>NZ_CP013141.1|WP_057970982.1|1241665_1242652_-|EF-P-lysine-aminoacylase-GenX
MNRDRPWQPSASFETLRLRAGLNVAIRAFFAERGVVEVETPVLSVAGNTDPNIASFSLQFSGRTDGAPRTRWLRTSPEFPLKRLLAAGFGDCYELGRVFRDGEAGGRHNPEFSMLEWYRVGWDHRRLIDETAALVRMALGLVGRDAGLQSIAYRELYRQRLGLDPFTADESVLRAALGEVVIDPEGLNRDDWLDLLMTHRLQPTFAADGLLAVHDYPASQCALARLRDDGDGWPVAERFELYLGPLELANGYHELADAAEQGARFDRDRALRAERGVPAPPRDEALLAALGSGFPACAGVALGVDRLLMAMLGTDRIADVLSFDFTRA
>NZ_CP013141.1|WP_057917860.1|1240832_1241549_-|DUF3011-domain-containing-protein
MIAIQWLAFAGLACTQARAEPVGERLYGGRLLRCASSGEEVVRCPADTREGVRLVHRTSGKPCVEGTSWGADRGGVWVSQGCAADFVLGKGGSGRDSTTGARVIKCESRGGRWNHCPAKIGEGVVLAQQLSKQPCLRNQSWGADKQGIWVSGGCRAEFRLLGVEEPTGQARKPLLRCESQDRRARRCDGETGLGVRMVKQLSKTECIEGRSWGYDAHGVWVEDGCRADFELDYRRNGG
>NZ_CP013141.1|WP_057917861.1|1239888_1240659_-|DUF3011-domain-containing-protein
MNMSARILSGLSLMVGLGMAAGAAQAAPQYDDYGYNNVIRCESTDNRERRCDADTRGGVQLSRQLSKSSCSQGRSWGYDRSGIWVREGCRAEFTLGRGGGGWNGGGGGWNGGGGSGEVVRCDSNDNRPRTCRIDGNRARLQRQISSSPCIEGRSWGSRPGEVWVSDGCRAEFVASRGGGGGGGGWNGGGGGGWGGGQEVSCESRNNRQNRCNMSIRRDARLIKQNSGSPCIEGQTWGWDRNGVWVAGGCRGVFRVN
>NZ_CP013141.1|WP_057917862.1|1238673_1239732_-|S-methyl-5-thioribose-1-phosphate-isomerase
MNDAIDFDRYDRIRPIRWTGDALELLDQRKLPFAVEYVRCDDSDAVAAAIHALTVRGAPAIGIAAAWGVVLAAREVEAGNGVEALAAIEPALQRLNAARPTAVNLAWALARMRRVLAGAGGDWREVLAREAQAIADEDLAANRRMGALGAALIEPGSGVLTHCNTGSLATAGFGTALGVIRAGVAQGRIDAVFAGETRPWLQGARLTVWELEQDGIAPTLIADSAASHLMKTGKVRWVIVGADRICANGDTANKIGTYQLAIAARHHGVRFMVAAPSSTVDMDTLSGDAIEIEERDPGELFAVGGTRTAAERVGAWNPVFDVTPHELIDAIVTERGVIERPDEAAMRAAFGG
>NZ_CP013141.1|WP_082638976.1|1235488_1238143_-|DNA-gyrase-subunit-A
MAELAKEIIQVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGAHSNKPHFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLLVDGQGNFGSVDGDSAAAMRYTESRMAKLTHELMADIDKETVDFQPNYDEKELEPTVMPTRVPNLLVNGSAGIAVGMATNIPPHNLSEVIEATIALINDPELDVDALMEYIPGPDFPTAGIINGTAGIINAYRTGRGRVRMRARAEIEVNESTGREAIAVTEIPYQVNKARLIEKIAELVKEKRLEGISELRDESDKDGMRIFIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILEAFIRHRREVVTRRTIFELRKARQRAHILEGLTVALANIDEMIELIKTSANPNEARERMLEKTWEPGLVGALLGAAGAEASRPEDLPAGVGLADGRYQLTEVQATQILEMRLHRLTGLEQEKLTEEYKLLLEAIRGLIEILENPDVLLEVIRTELRNLKEEFGDARRSEIRASEEDLDILDLIAPEDVVVTLSHSGYAKRQPVSAYRAQKRGGKGRNAASTKDEDFIDKLWLVNTHDTLLTFTSAGRVFWLSVHQLPDAGPNARGRPIINWLALEAGEQVQAVLPVRAYDDDHFVFFATRNGTVKKTPLSEFAFRLARGKIAINLDDGDALVDVALTDGQRDVMLFASNGKAVRFSESSVRAMGRTATGVRGIRLAEGDEGASNAFVVSMVVIDGDGDILTASQRGFGKRTAVEEYPCKGRGTQGVIALKTTDRNGALVGAIQLSDHHEVLMISDGGTLVRTRADGISQVGRNTQGVTLMRLAENENLQTIERLDASLDDAEEGGETDLPAVPGGAVEAAPAADAQEPSSPEA
>NZ_CP013141.1|WP_082638294.1|1234690_1235284_-|polyisoprenoid-binding-protein
MNSVTRSALATLALLAGSSLAGGAQAAPVAYKIDPSHTYPSFEADHMGVSVWRGKFNKSEGTVVLDKKAGSGTVEVTIDTKSIDFGLDAMNEHANKPELFDTAKFPTATYKGKFADFVAGAPTRVDGELTLHGVTKPLSLKIAKFKCIPHPMLKRELCGADASASFQRDQFGMAAGKEYGFSMNVDLRIQVEAVAAE
>NZ_CP013141.1|WP_057970981.1|1233933_1234293_-|DUF1428-domain-containing-protein
MSYVDGFVLAVPKKNLAAYRRLARKAGKIWMEFGALQYVESVADDVKPGKSTSFPQAVKLKPDEVVVFSWIVYKSRAQRDRINKKVMADPRLADMMDPKALPFDGKRMIFGGFKYVVSY
>NZ_CP013141.1|WP_082638293.1|1231830_1233801_+|M4-family-metallopeptidase
MSRPRPRPSSTLVSGVIPVNRNVSPTLHALSIAMSFALISGAAGAAQRVDLHQKDVAQLNKQYQAAIAKSGAAAKANVRHAELIALDSNSSLTVLKSSQDDNGTRNYRYQQSFRGVPIFGEHVVVSEDASGNVRSLFGRSVEGLAAELPATSPKLSQAQALSVAKSAALGKRVGALQTRNESSRQMIYIDDNGRAHMAYVVNYFADAAQGGEPTRPFVIVDANSGKVLKQWEGLNHALVATGPGGNQKTGQYEYGTNFGFNDVTQSGSTCTMNNANVKTVNLNHGTSGSTAYSFTCPRNTVKAINGAFSPLNDAHYFGKVVFDMYNSYVGLPPLTFQLSMRVHYSNSYENAFWDGSAMTFGDGRTTFYPLVSLDVSAHEVSHGFTEQQSGLIYSGQSGGINEAYSDIAGEAAEFFMNGTNDFLVGAQIFKGTGALRYMANPPQDGRSIGHASNYTSGMDVHYSSGVFNKAFYLLATKAGWDTPKAFKAFAKANKDYWTPSTDFINGACGVEKAATDLGYTVADVSAAFLTVGVDCPGGPGPGPGTTYTNGTDYAINDNSTVDSPITVSGRTGNAPTNASVSVNIIHTYRGDLKVDLVAPDGSLYNISNRAGGSADNLSGTFTFNLSSEPLNGTWKLRVNDNANADVGRIDTWSITF
>NZ_CP013141.1|WP_057970980.1|1229416_1230967_+|peptidase-M4-family-protein
MNRNVSVLSFAVSLVLATGAAAAAQRVDLHSVDVAKLNQQYRLATAKSGAAAKANVRHAEVIALDADSTLSPLKSSQDGDGSINHRYQQNFRGVPVFGEHVVVREDAKGNVRALFGRSVAGLAADLPALDAKLGATQAIGLAKGTTLGKRAATQRVSNENSRKVIYLDEADRAHLAYVVDYFADAPSGGEPSRPFVIVDARSGKVLKQWEGLNHAEIGTGPGGNQKIGQYEYGSSGRGFIDVTRSGSRYTFSTPNVKTVNLNHGISGSTAYSYIGPRNTVKTINGAYSPLNDAHYFGKVVFDTYQAYVGVAPLTFQLSLRVHYSNNYENAFWDGRTLTFGDGRTTFHPLVSLDVVAHEASHGFTEQQSGLIYSGQSGGINESFSDIAGEAAEFYLRGRNDFLVGADIFKASGRALRYFANPPQDGRSIGHARDYTSGLDVHYSSGVFNKAFYLLANKPNWGTVKAFKAFAKANKDYWTPSTNFNQGGVGVRQAATDLGFNAADVVDAFAQVGVTAQ
>NZ_CP013141.1|WP_057917858.1|1246035_1246806_-|cell-division-protein-ZipA
MSDVTLLRIGILIAGLILIGAIVFFGRPRKPGQGKRVAREEAPRAGERKPGVRQEPSLGEQIENELGESSTVPGEATTQAELELFDRTLEGGANAANSDLGRRVSEEFDKIVTLYLAARAGQKLHGPDIVVAAEKAGLVYGHMGVFHRLVEGHPERGPVFSVANIMKPGSFDMATIQSLETPAVAFFLTLPAPIPALDAWETMLPTAQRMAELLDAVVLDEQRNALGRQRIAHLRDELRAYDRQREAPPLSKPTRW
>NZ_CP013141.1|WP_057970984.1|1246981_1250485_-|chromosome-segregation-protein-SMC
MRLSTIKLSGFKSFVDPTTLHLPTNMTGVVGPNGCGKSNIIDAVRWVMGESSASRLRGDSLTDVIFAGSSARKPVSQAMVELIFDNSDHTITGEFAAFNEISVKRTVSRDGTSQYYLNGGKCRRRDITDLFLGTGLGPRSYSIIEQGMISQIIEAKPEDLRVYLEEAAGISKYKERRKETETRIRHTRENLDRLNDLREEVGKQLEHLRRQARQAEQYQAIQAERKVKDVEWKALEYRALDQKLQTQRERLSQQETRLQQLIAEQREAERELETGRVRREEAAEALNKAQAASYEVGGVLARVEQQIQHQREMSGRLHKARDEAMAALAEIGEHIGSDQSRLDVLLAAVADAEPRIEAMREDDEARQDALRDAETKLNDWQQRWDAHSREQSEAARAADVERTRLEGLDRQTLEADRRREAMTSERTGLDVAALAEAFEQLQSQHDLQKESLESLTDELETRKSTVSDLQEQQRATQNQLAEVRKQAQTSRGRLSSLETLQQAALGLEQGAALTWLQARGLDSAQRVGETLTVEAGWENAVESALGQLIEGVLVEAPEALVDAIGELGEGRLTLVSPARDDSVYAPTSLASKVQGPAAIRRLLSRLHGADDLAAARALQPSLGAEETVITRNGERLGAGWVRVLRSGAAKQGALLREREIQSLRAEIETLQSRERELEQTQIQLRDRLLASEQQREDAQRALYMAHRGVSELAGQLQSHQGRLDSARNRIEKIDAELEQLLILIDAGGEQAREARTRQEAAIERMGELEDARLELESERRRLFEARDAARNAARESRDAAHALSLTLETQRAQIAGLSQALERMGGQRGQLDSRLGELSAQLADGDQPVVALEQQRQVALEQRVVAEHDLTAARTALDGIDNDLRKFEQTRQQRDEQALQQREAIGQRRLEQQALVLKAETLTTAIAEAGAVLEDVVNALDENAEPQVWERTVAELDGKLRRLEPVNLAAIAEHAEAAQRKDYLDAQFTDLNTALETLEDAIRKIDRETRGRFKDTFDRVNSGVQELYPRLFGGGHAYLELTGEDLLDTGVAIMARPPGKRVSNISLLSGGEKAMTAVALVFAIFRLNPAPFCLLDEVDAPLDEANVGRFTAMVSEMSEQVQFLFVSHNKATMEAAQQLSGVTMREPGVSRLVSVDLAEATRLAGAA
>NZ_CP013141.1|WP_057920043.1|1250882_1251842_+|LacI-family-DNA-binding-transcriptional-regulator
MADLAELAGVSAITVSRALRDSPLVNPETRAKIKELAEQQGYQFNISARNLRLRRSMTVAVVVEMKPTVERQMSGPYPLDLLGGISQELTSAGYSVLLTSLQGGALPSVQAADGVILLGQGAHEDAMHEVQRWGRPMVVWGAVSRHETQVVVGSDNHRGGKLAAERFLALGRRRPVFLGDSAHGEFAERLEGFVDTLAEHGIVPLTPTVANFTVSAGAQAVHQLLDEHPQFDALFAASDLLAIGAIRALIERGRRVPEDVSVIGYDDTPLGATYLPPLTSIHQNFVDAGVSLARKILAMIEGRPAQSEILPTHLVARVT
>NZ_CP013141.1|WP_144436361.1|1252049_1255127_+|beta-phosphoglucomutase
MDNNASLRSAATTHSGPRRVIQPQAAPHLPPASAQADAWRLRQDRFDPSQRRRDETLFALANGSLGVRGGFEEADGGSDGSFLASVYEKHPIHYHERFPGFARSTDTRLPVADGQRIAVWLGDQRLDIDLAQWLGFERELDLRSGRLSRRLRLRTAQGQTLEIHAERVLPFDAATSGVDLLAIRYRVESIDYSGPLRLASAIECGHQAAEQGDDPRIGVAVSEGLRLLSAQADELGAHVLQSTRHSNLRVACAQAHRLDDGLGFGSAERADEHVLQRYDGALQPGASLTLEKFVAYASGSEDSELVERATHTVARAVAAGFDALAAQQATALAEFWDGAGLSIDGDASAEQALRFNLFHLLQSAGRDGVNGTAAKGLTGEGYEGHYFWDTEAFMLPVMVYTAPEVARAMLHARYLALEPARRHAREMNHPRGALFPWRTITGGECSAHYPSGSAAYHINAAVAYAVGLYLDATGDIDFLLESGAEVLFETARIWPQIGHFNPRRGGAFCIHEVTGPDEYTALVDNNFYTNRMAQQHLLRAVQVWQRLQSERPQQAAALAARLQLDAHEVDTWRRAGETMFLHYDEALGIYAQDDTFLDKPRWPFPKHEGEHRPLLLDFHPLTLYRHQVCKQADVVMALVLAGDGISAEVKRRSFDYYEAVTTHDSTLSASVFGILASEVGHAEQAAKYFAENLRVDLDDLHGNTDHGVHMAALAGTWLGLVSGFAGLRAVDGALHFAPTLPSGWNGYGFGLRWQGRRLRLRVSRDGVEYSLLEGAPLTIGHEDRRVELSRDASLRAPLAAPGGPAPRAFPRPARALIFDLDGVLTDTAQTHYRAWKRMADEEGFPFDEQVNELLKGVDRMASLDIILRHAGRVLDRDEKLALAERKNAYYVEAIQEVTPKDLFAGVERLLERARARGLKLGLASASRNAGALLERLGIADRFDYIADSARIARAKPDPEIFLTVAAALGVPPSHCIGVEDAAAGVVAIKSAGMAAVGIGDALALARADACLPDVASFDLDAFVLP
>NZ_CP013141.1|WP_057973074.1|1255248_1257636_+|TonB-dependent-receptor
MRFALSAAIAAILAPGYALAQDAAAQAAAPQAESGSESATTLDAVIVSGTARFKGIRKRDASFSITTASLEQIQEAVPLSTADALKVVPGIWAESAGGSTGANIFVRGMPSEGDAPFVTVQMDGAPLYPPPTLSFLENSTLFRMDDTIERMEVLRGGPSPIFSNGQPGATVNFIQKKGGEEPAGSVRVGLGSDNLRRVDLFNSGKLGEGWYYSVGGFYRTTDGVRDTQFPADKGGQLSATLTHSWDSGEVTVYARHTNDKNAFFTPIPLLSRNNGSSLSSFPGLDAQTGTLLGNDFRHVTLPTGPNGQSITRDLAEGRGINLDVFGASMDFYVGDWTISDRVNYVSGSAPTNGLFTGASPKTMADFIAGYGSAGTATYVNGGGAVDPNQQVLTAGFWVVDKELESFTNDLRFSRDLFEGNTLTAGVYYARYSSKDTWYLGNNMLLTAQNNARRINLSLADGRQVTRDGFTGTSFFSLRGDYDGQNTAVFLADEWQINDRLRLDGGIRYEWQQIDGTVHDVASVDLDGNPNTLYDNATSISLPTSRRIDQDDKHFSWTLGLNYKLNDSASLFARANSGYKLPAFDNLRDGNTKTQEIDQYELGFKSGNSVYDLYLTAFYNSFTNSPFQAFLDDGTNFTTAGDSEAYGVEVEAAVRPVGGLELALTGIWLDAKYENYREFTGNQVMRQPKQQFRFTPSYFWNLPFGDLKVFATYSRIGDRYADLANTQKLPSYHTLDVGANMHVGENWEFALTGSNVTNELGLTEGNVRVPGAATGGVFMGRPIAGRSYLFSAAYRW
>NZ_CP013141.1|WP_057970986.1|1257885_1259130_+|MFS-transporter
MNRGRMILAMILTYMVFGILLNSVGTVILQSIQGFGISKSDASILEAFKDLPIAIVSFLTASLMPRLGYRRAMMLGLGLVGAACLLMPLLASFWMTKLLFVATGVSFALVKVSVYSSIGLLTEDKQAHASLTSTIEGWFMVGVLAGYWIFAWFIDPQSPGDPVWLRVYWLLAAIAAAILALLATSRMDERAASDGHAVGDSFLDMFRLVAQPLVAVFLVSAFLYVLIEQSVGTWLPTFNREILHLPTTMSVQAASIFAVSLALGRLAAGVALRRVPWHWLLMVCVLAMAALVLLALPLARNLQPNPAMSWAHAPLAAYVFPLIGLFMAPIYPAINSVVLSSLPKSRHAAMTGLIVVFSALGGTTGSFITGQLFARIGGGTAFYLSLLPMAMLLLAIALLKRQSGLAERAAMAPS
>NZ_CP013141.1|WP_057917853.1|1259289_1261353_+|TerD-family-protein
MNGIYLRRRGKLYLKAGDGGASAAQVAMVQKETEAFGFILSEAVIERLGTLSTEQLTRVLRELRKHLAAMTGAHREHRPLFPDFPRGSLALAEAELYMRTVYHYVTRRRLHLQQPAETVPLLNGRAPREIELGTLDDYENICTTLAASRTSLSLQDKADLGWFIAQYRAQVVRLLPVEIPFKENLAVIGAGLLRHAPGEPTDEFLRTHLKTATDTLRLAVALSEGDVSLAEPTRFKPMKRGERRFLLRQLETLDDPTEDMRRWGERWKRLGEVLHPGDYRERFPKTWRAFRVLRENLAFASFNGAIEHALEQGRTGAVAQRLAARPGEFARRLDHLLRSGSESQAVLERFRGVAEQVSTPVLLQALSQFEHRGQSPLRTFFPKGDAARAWALKDRRAPIDARVLSDAIAVCRDALRARFARLPPLGRCYIDPALAHMRAPLAQRSASRALRTLVRGSRLPLPDTRFIRLFLWWSNGRQRTDIDLSAAFFDSNFVYRDVVSYYNLRGYGGHHSGDIVNAPQGAAEFIDLDLQRLRGLGLRFVVVSIHSYTEQPYCDLPECFAGWMARSDANSGEPFEARTVEDRLDLASNQQSCLPFVLDLETDQILWTDIGLGGYPRWNNAANHLSGISLILRAMTALATPDLHTLFELHAQARGRVVESPDQADTVFSMREGVTPFDVDRIRAEFL
>NZ_CP013141.1|WP_057917852.1|1261468_1262026_-|hypothetical-protein
MQDAQDLKRLAADLAVFAQHLQDQSERAVQHVDRSAEELHRAAQGVGAGAQELAQQIVQAVQAQAQEAVGRGAELAFGSIGTQLRDSADVATRAAQALDDQRKKIERAQQNLIYKSAVALLIGSLLAVGGSWYFARKSLRLIERAEFGAEILDATKAGTLTRCDGKLCARAGKRFGAKGEYVLIE
>NZ_CP013141.1|WP_057970987.1|1262048_1262369_-|hypothetical-protein
MFGLVSAEASLRFARRLRRVPFRYSTLMTDENDIDRTFARLVEAARHQDGAAFKAATQDYAQSAEGQAWLQSGHDRYQQIKANLQARAQAAQSPLGGSSSGPSSGP
>NZ_CP013141.1|WP_057917850.1|1262630_1263725_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MAKVTLDRLRKVYPNGYVGVADASFEIEDGELLVLVGPSGCGKSTLLRMVAGLETISSGELSIGERRVNDMPPKDRDIAMVFQSYALYPHMTVADNLGFGLKLRGMGKAEIAERVGAAAAMLELEPLLQRKPAALSGGQRQRVALGRALVRQPQVFLLDEPLSNLDAKLRMGMRVEIARLHRQLGTTMIYVTHDQIEAMTLGQRIVVMKDGKIQQIDTPMALYNRPVNLFVATFLGSPKMNILWGQVDERDGDLSLRIGEGVALNLRPDAETREKVRAYVGRELTIGLRPEDMHLAEAGPDTLAAQVEVVEPVGNEAFLNLGCGGCDLVVRLPPYNLPRAGDTVHLSYAAERMHFFDRESELRL

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Crispr_ID: NZ_CP013141_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_4

1451387-1451592

Orphan

Consensus_repeat	Method
CGCGGTCGCGGCTTACGCCGCTCCTACCCTGCG	PILER-CR
GTAGGAGCGGCGTAAGCCGCGACCGCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP013141_4

>merge|NZ_CP013141|4|1451387-1451592|PILER-CR,CRISPRCasFinder
CGCGGGGTAGGAGCGGCGTCCCACGGGGATTTCCTACGCTCACGAGCCGCGACCGCGCTCGTTCGATCTTGCGGTGTTATTCGCCACAGTCTCCTGTAGGAGCGGCGTAAGCCGCGACCGCGGGACGCGCAGAGGCACCAGCGCCGATGTAGCTCATCGAAGCGGCGTGCTGTCGCAGGGTAGGAGCGGCGTAAGCCGCGACCGCG

>NZ_CP013141|4|2|1451387-1451592|PILER-CR
CGCGGGGTAGGAGCGGCGTCCCACGGGGATTTC	CTACGCTCACGAGCCGCGACCGCGCTCGTTCGATCTTGCGGTGTTATTCGCCACAGTCTCCTGTAGGAGCGGCGTA
AGCCGCGACCGCGGGACGCGCAGAGGCACCAGC	GCCGATGTAGCTCATCGAAGCGGCGTGCTGTCGCAGGGTAGGAGCGGCGTA
AGCCGCGACCGCG

>NZ_CP013141|4|3|1451482-1451592|CRISPRCasFinder
GTAGGAGCGGCGTAAGCCGCGACCGCG	GGACGCGCAGAGGCACCAGCGCCGATGTAGCTCATCGAAGCGGCGTGCTGTCGCAGG
GTAGGAGCGGCGTAAGCCGCGACCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057916056.1\|1444817_1446416_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP013141.1\|WP_031374311.1\|1450230_1450494_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057916049.1\|1453539_1453953_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP013141.1\|WP_169795618.1\|1461324_1461492_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057916045.1\|1458683_1461152_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NZ_CP013141.1\|WP_169795617.1\|1442903_1443611_-\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|226868
NZ_CP013141.1\|WP_057971073.1\|1457887_1458607_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP013141.1\|WP_057971069.1\|1447717_1448458_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225516
NZ_CP013141.1\|WP_057971064.1\|1439611_1439830_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057971072.1\|1452563_1452968_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP013141.1\|WP_057971071.1\|1450606_1451362_+\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|377117
NZ_CP013141.1\|WP_036149770.1\|1454835_1455516_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NZ_CP013141.1\|WP_057971068.1\|1446453_1447557_-\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP013141.1\|WP_057971070.1\|1448635_1450087_+\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NZ_CP013141.1\|WP_057916048.1\|1455662_1456880_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP013141.1\|WP_169795616.1\|1440883_1442764_+\|M4-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341060
NZ_CP013141.1\|WP_057916047.1\|1457016_1457820_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320690
NZ_CP013141.1\|WP_031374035.1\|1453995_1454745_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NZ_CP013141.1\|WP_057916050.1\|1453110_1453524_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP013141.1\|WP_057971067.1\|1443798_1444701_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176165

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057916056.1\|1444817_1446416_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.0112e-36
NZ_CP013141.1\|WP_036149770.1\|1454835_1455516_-\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	8.28449e-22
NZ_CP013141.1\|WP_057916049.1\|1453539_1453953_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.77628e-43
NZ_CP013141.1\|WP_057916045.1\|1458683_1461152_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NZ_CP013141.1\|WP_169795617.1\|1442903_1443611_-\|DUF1311-domain-containing-protein	gnl\|CDD\|226868	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown].	9.66368e-06
NZ_CP013141.1\|WP_057971073.1\|1457887_1458607_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	3.71635e-12
NZ_CP013141.1\|WP_057971069.1\|1447717_1448458_-\|SIMPL-domain-containing-protein	gnl\|CDD\|225516	COG2968, COG2968, Uncharacterized conserved protein [Function unknown].	5.6183e-35
NZ_CP013141.1\|WP_057971070.1\|1448635_1450087_+\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	4.45995e-158
NZ_CP013141.1\|WP_057971072.1\|1452563_1452968_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.02731e-28
NZ_CP013141.1\|WP_057971071.1\|1450606_1451362_+\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|377117	pfam03740, PdxJ, Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyzes the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.	2.51197e-110
NZ_CP013141.1\|WP_057971068.1\|1446453_1447557_-\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	7.02658e-26
NZ_CP013141.1\|WP_057971067.1\|1443798_1444701_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176165	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 7. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.24473e-98
NZ_CP013141.1\|WP_057916048.1\|1455662_1456880_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	4.5534e-07
NZ_CP013141.1\|WP_169795616.1\|1440883_1442764_+\|M4-family-metallopeptidase	gnl\|CDD\|341060	cd09597, M4_TLP, Peptidase M4 family including thermolysin, protealysin, aureolysin, and neutral protease. This peptidase M4 family includes several endopeptidases such as thermolysin (EC 3.4.24.27), aureolysin (the extracellular metalloproteinase from Staphylococcus aureus), neutral protease from Bacillus cereus, protealysin, and bacillolysin (EC 3.4.24.28). Typically, the M4 peptidases consist of a presequence (signal sequence), a propeptide sequence, and a peptidase unit. The presequence is cleaved off during export while the propeptide has inhibitory and chaperone functions and facilitates folding. The propeptide remains attached until the peptidase is secreted and can be safely activated. All peptidases in this family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. The active site is found between two sub-domains; the N-terminal domain contains the HEXXH zinc-binding motif while the helical C-terminal domain, which is unique for the family, carries the third zinc ligand. These peptidases are secreted eubacterial endopeptidases from Gram-positive or Gram-negative sources that degrade extracellular proteins and peptides for bacterial nutrition. They are selectively inhibited by Steptomyces metalloproteinase inhibitor (SMPI) as well as by phosphoramidon from Streptomyces tanashiensis. A large number of these enzymes are implicated as key factors in the pathogenesis of various diseases, including gastritis, peptic ulcer, gastric carcinoma, cholera and several types of bacterial infections, and are therefore important drug targets. Some enzymes of the family can function at extremes of temperatures, while some function in organic solvents, thus rendering them novel targets for biotechnological applications. Thermolysin is widely used as a nonspecific protease to obtain fragments for peptide sequencing. It has also been used in production of the artificial sweetener aspartame.	7.46176e-87
NZ_CP013141.1\|WP_057916047.1\|1457016_1457820_-\|M48-family-metallopeptidase	gnl\|CDD\|320690	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	2.66401e-71
NZ_CP013141.1\|WP_057916050.1\|1453110_1453524_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	8.34715e-33
NZ_CP013141.1\|WP_031374035.1\|1453995_1454745_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	6.68752e-53

>NZ_CP013141.1|WP_057971071.1|1450606_1451362_+|pyridoxine-5'-phosphate-synthase
MTALSVNVNKIAVLRNSRGGGEPDVRHAAQACLDAGAHGITVHPRPDARHIRADDVYTLAELTRARGVEFNIEGNPFAPPREGYPGLIELCRATRPAQVTLVPDGDDQLTSDHGFDFERDGDRLRPLIAELAELGCRVSVFADADRDGIERAAELGAARVELYTGPYAEAFEGGDLDAALRTFAAAARRAQAAGLGVNAGHDLSQANLGAFLRGVPNVLEVSIGHALIGEALYQGLDATVRGYLDVIAKAR
>NZ_CP013141.1|WP_031374311.1|1450230_1450494_+|hypothetical-protein
MPWVYLLLAAAAFVLALKTTSPGILAVSLLAALGLMIAGVMSLLARRLDNTSRDVSSIVDPMELRRLREQAEARKLAASSQSESSPN
>NZ_CP013141.1|WP_057971070.1|1448635_1450087_+|cardiolipin-synthase
MEFRHVLDLLPDLWRDLLAIPHLGLYLTIGWAVYLLGLGFWIVLQKREPVATISWLISLAALPYIGFLIYYFFGPLRIHRQRLRRVRARASLPAPPAGLTPSPEAIELAKLGQATTGLPPTTATDVRLLIDGGAKYTALLADIAQAREHIHLEYYIYLPDRTGTALRDALIERARAGVKVRLLMDAVGSGQTSRRFIKPLLEAGAEVAWFHPMKLRWFWRRPWLNLRTHRKIVVIDGRVGYTGGINITDEEDERLREDAYRDLHLRLEGDVVRELELVFTEDWCYATGQPPLKMQHPPPQPGRVASQVVSSGPDSPWEAIHRVHVGAIHAAQRRVWLVTPYFVPSEAARMALTSAALGGLDVRLLVPKLSDSRLVTYAARSYFDELLDAGVKIHEYGPRMLHSKALLCDDKMAIIGSANFDHRSFRLNFEISVMFYNEQLAGELAALIQEECSRAPRVRPDRERSLWRARLPEALARLVSPLL
>NZ_CP013141.1|WP_057971069.1|1447717_1448458_-|SIMPL-domain-containing-protein
MIHRFLIAAALLALPPSPVFAAQAEPRSIHVSGSAEIKVVPDLILLDVGVESRHAQLDQAKRSNDENVAKALAFLKRSGVPDKDVQTDFISIEPTYHTDYSFTKPQIYIVRKSIGIKLSRIGDLENVLTGLLGSGVQYIHGIEFRTSQLRKHRDAARALAVQAAKEKADALVADLGVRRGPVLNVSESYSGGWWRSGSRWGNGMSGGQMVQNVMQNSGGGEAADGETLSVGQISVSASVSASFAIE
>NZ_CP013141.1|WP_057971068.1|1446453_1447557_-|PA0069-family-radical-SAM-protein
MDAARKAQLSIQPTAFKGRGAASYVAGRYAVTTVQGEDDGWGSVYADADASSRPDTQVREETARSIITRNDSPDIGFSQSVNPYRGCEHGCVYCFARPSHAYLELSPGLDFETRLFAKVNAAERLQNELARPGYQCAPIALGINTDAYQPIERRYRITRGVMDVLDACSHPFSIITKNASIVRDVEVLASMARRRLVSVYFSVTTLDNQLSAKMEPRASAPHSRLKAMRTLAEAGVPVGVLVAPTIPMINDGELEQILAAAHEAGARAAGYVLLRLPHELKQVWRDWLQLHYPDRAAHVMSLIQQMRGGKDYDSAFGKRMRGEGPFAQLIGQRFQKAWRKHGYGRLPALDTSQFVAPRKPTPQLELF
>NZ_CP013141.1|WP_057916056.1|1444817_1446416_+|MFS-transporter
MPPSDPTADASGRLDRFLILGAVCLAGLVLPLSFTGPPVAIPAIAAELGGSPVALNWMTNAFMLAFGSCLMAAGTLADTYGRKRIFAIGIVSYAVVSLLLALAPNLTTLNALRIVQGIAAALALAGGNAALSQEFHGPGRIRAFSLLGTSFGLGLAFGPSLAGWLVQAQGWRAVFLSSLVIAALATVFGLPRMRESRDPAATGLDWRGSLSSTAMLALLTVGVLEAPERGWSDPWVLAALAGAALLLALFVRVETRAARPMLDLSLFRLPRFVGAQLLPIGTGLCYLVLIIVLPVRLIGIHGHSALDAGLLMIALSAPMLVVPILAAVLSHRIAAGALCGAGLLLAAAGLVWLGAIAGDASPAQLIAPMLLIGTGSAVPWGLMDGLAISVVPKERAGMAAGVFGASRVSGEGLAIAVAAAALASLLKLRLHDLGALDGHALAEAAQRLATGDAARAQALLPALDPAVLLRSYDEAFAWLMYGLAGVTAAIAWLAYVLLGNASAHEPAAMPDRVGEDIEEDIGAAAAAREAAC
>NZ_CP013141.1|WP_057971067.1|1443798_1444701_-|LysR-family-transcriptional-regulator
MDKLGSLLAFVRTAETRSFVAAGRHIGVSASAVGKSVAKLEQQLGVRLLQRNTRNVRLTEEGRMFYERCRPLLDELDEAEAMLTHAMQAPRGRLRVGLPTAGYRFLVPVLGEFRARYPEVELELDFDDQLVDVIDGGFDVVIRSGDMPDSRLRARRLGPFCFMLCASPDYLARRGEPRLPSDLEAHDCIHFRFANSGKVQEWSLRLEPGEAPPHLPPALICNNSEAAVLAAVHGLGIVYTVDFLVRDRLACGQLRRVLPGFETQRGQFWALWPAHRHISPKLRVFLDFIDEHLFVHQPIA
>NZ_CP013141.1|WP_169795617.1|1442903_1443611_-|DUF1311-domain-containing-protein
MTPPALASSALLAVTLMASASAFAAPPASAKPSFDCAKAASAVEKAICGNDGLARADAAVGRAYERLRKSLDAQAASGLREDQRWFIGIRDAAYDNATAANRTQSLKALLDDRVRTLSQIRAQPAAGWVGSWRNLAGGIDVVDDGAGRLKVEANAAHPLDGRWLCDASGSGRSAGAALTVQVEGGERSSLKLTREGAALRVQALDASGKALLGPDYCGHNGSLEGVYFAVPPGSD
>NZ_CP013141.1|WP_169795616.1|1440883_1442764_+|M4-family-metallopeptidase
MSMKQRVLTASILLAVTGTTATALVTAQHYRDAGNASAQAGSNAANASAKTAAAAHANAHSSGFALAPTVSGATPSAQLAKHPAVARAREQLLAQKLHGTGAQADREAIDAEQYLPRDVVVEADGSEHVRFNRDYQGLPVIGGDLVTHMKDGLLTSVSKTMDLKLGQGGAKAPKLSVAQAVTDAGVHFAGRFMDKPTSRVVYFAQDNQPKLAYEVTFRGLNKAERPVHDMIYVDADNGAFLGRDSKIYSAEAAQGEGFTITRGKVAISTSKVGAEESDGRGAGYLLRDDKRGGGTLHNTGGTVVDLYFGGGDFTAPPMFDKDNVWGNEQMSNIERTGVEAHYGVSKTWDYYKKLYDRVGIFGDSKGVESFVNVTFSIFYFIDAGGTNAFWDGEAKRMVYGNGDYGISNPVVALDVAGHEMSHGVTQATSNLAYAGDAGGLNEATSDIHGTLVEFFDNSPKDPPDYLIGENVMLDGTPLRYMFKPSLDVAEDGSGSFDCYPAGGFTDEDPHYTSGVGNHFFYLLAEGQKVPKSHRKTLLPADLVCNGATGLKGITPNTAGQIWYRANTLYLTSQSSYPQAREATQTAAQDLVDKGLLKASVVKSVACAWEAVNVSLPEGSTGLRCKS
>NZ_CP013141.1|WP_057971064.1|1439611_1439830_+|hypothetical-protein
MRYTVQLSESDYQGRRLSCDVADECFNDAIQASQAAKTEAFHLTVQLGLPVAIRIFEDSRIYLSHIMPAPRR
>NZ_CP013141.1|WP_057971072.1|1452563_1452968_-|biopolymer-transporter-ExbD
MAGSAYSVSAYRNDDVVAEINVTPLVDVLLVLLIIFMVTAPVLTGQLNLSLPVPSDKPVPVAPKAMLIVEQDGSFELDGRSLSATELPATLKALAVASPDTVLEVGANADADYQGFTHAISAARDSGLSNISTR
>NZ_CP013141.1|WP_057916050.1|1453110_1453524_-|biopolymer-transporter-ExbD
MAFSNNSDSGAISDINVTPLVDVLLVLLIIFMVTAPTVSYPIDVNLPQPTLNPPPQTQEPPPPIALRIDATGQVFWNDNPTPLQAIPGMMKETVQRDPTNQPLLEIDTNEDAEYGILAKVLAYAKNADMKKIGFVQK
>NZ_CP013141.1|WP_057916049.1|1453539_1453953_-|biopolymer-transporter-ExbD
MAFSTGNDNGPMATINVTPLVDVMLVLLIIFMITAPLMTHKVEIKLPEATLTKTEEPPKTPPITLAIQESGSLYWNDEPVTRDQLESRLSVEAQKTPQPQINVRGDRTTKYRVVNDVVTIAQRQGMRKVGFIAIKER
>NZ_CP013141.1|WP_031374035.1|1453995_1454745_-|MotA/TolQ/ExbB-proton-channel-family-protein
MLQQTTTAAAGGSNAEALQQMSFSHLLQNFDLVGWIVFITLTLMSVLSVYWIVINFVKNLRLRGSSDRVVSTFWETPNAQDAIRYMEEQSRSEPFSKIALDAAQAAAHHQRHEGSRLVESLNRSEFVDRALRQAVTRESSRLEAGLTVLATVGSTAPFVGLLGTVWGIYHALLRLGASGESSIQAVAGPVGEALIMTAIGLFVAIPAVLAYNFFVRLNRVTNNKFDTFAHDLHDFFATGSRVGELSNKR
>NZ_CP013141.1|WP_036149770.1|1454835_1455516_-|energy-transducer-TonB
MTQDLELQVRKDDNDREGLNWARIAGITCAIAVHAAALLLLLAPMTPPAQQQDEEQVTMVNIIKPPPPPPPPPPPPPEPPKELKQPPKELSPPRPTPTPPPPDQPPVENLDPSPIDPPAPPPAPPAPPTAASDIGSSVDPSSRRLNPPKYPPTEARQGVGGTVVLVISIDAQGNVMDVQVEKSSRNRNLDRAAMDAARKWRFNPEVRNGQPVASRVRVPVDFVPPT
>NZ_CP013141.1|WP_057916048.1|1455662_1456880_-|tetratricopeptide-repeat-protein
MNKQPTRRSTLLAAAIGVTLVFGAVSQVNAQNMAERNAQRRANKESSKGSTTKAENQFPNATRTAPDAKASSKGGAKLQKMMEFYDKEKAAEARAVADEIIANTAFNAYERSFAAQIGAQLAYDGDDSKAAIAYLKQALEFNGLDNNGHFGAMFMMAQLQLQEDQYADSLATADRFLAETKSTKPEHLIVRGNALYRLERYPDAAKAIKEAIDASPEPKVEWQQLLMASYIENNQGADAAKIAEAIAAKTPNDKRAQMNVAAVYSQADMLDKAAVVLEKVRAAGQFTEDKDYRQLYATYLNLDGKEKEAAGVITEGLEKGVLKPDYQAYVALAQSYYFSDQTAKSIDAYKKAAPLAPDGETYLNLARVLWQEDRIPEAKEAAKQAIAKGVKKPDDANKILALKGK
>NZ_CP013141.1|WP_057916047.1|1457016_1457820_-|M48-family-metallopeptidase
MKRILFALSVAAVVTACATTTSPTGRTQHIGAVSQEQLNLMGAKAFEEAKSKQRLSTDPRQNAYVRCVVSSITQQLPQGWQANWDVALFADNSPNAFALPGGKVGVNTGIFTVAKNQDQLAAVIAHEIGHVVSRHHDERITRQMSAQVGLGILGSLVGSRYGEGAVNATNQLGGAALQTAFLLPGSRTQESEADVVGQRLMAQAGYDPRQAVNLWQNMIAASASRPPQWLSTHPDPQSRIQELNARAGALIPTFEQARASGRTPKCG
>NZ_CP013141.1|WP_057971073.1|1457887_1458607_-|CPBP-family-intramembrane-metalloprotease
MGSVAGFAIDLLLSVVLLAVFVMAGGVLWGMLQGLRGVPVEMDAGSDAMIAITLVGTGLGALMVYLLRRRATREECAASWQALWRKSTWLAILAALLATTGFSMLVGLLAQQLQIEMTPSNLVLSEAVAEHPFLLLIFAVLIAPAYEELLFRRVLFGRLWAAGRPGLGLALSSIAFALVHEPPGLGASQGWNMLMLWAVYAFMGAVFAAVYRRTGTLWAAYAAHALNNLVAGTALFASL
>NZ_CP013141.1|WP_057916045.1|1458683_1461152_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MTNTEHDPSQDPSSGPTPQSQTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNAIDEALAGHADDVVVTLHEDGSVSCYDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLNIWRDGHQYQQEYALGEPIYPLKQLEASQKRGTLLRFKPAVEIFTDVEFHYDILAKRLRELSFLNSGVKITLVDERGEGRRDLFQYEGGIRSFVEHLAQLKTPLHPNVISVSGEQNGITVDVALQWTDSYQETMFCFTNNIPQKDGGTHLIGFRAALTRTLTNYIEQSGLAKQAKIALSGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSEVRPVVESTFGARLEEFLQEHPNEARAITGKIIDAARAREAARKARDLTRRKGALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVERARFDRMLGSAEVGTLITALGTGIGKDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIGLPPLYKIKQGKNEIYLKDDAALDQYLANNAVEGAALIPATGEPPIEGAALEKLLLAYAGAKETIARNAHRYDPNVLQALIDFTPLDTEHLLKNVDERHELDALEKRLNQTGLGKPRYSLALHPANETRQAALLVTRNHMGQQLIQVLPLSAFEGGELRSLREAASMLHGLVREGAQIVRGNRAQAVASFAQAQAWLLEEAKKGRAIQRFKGLGEMNPEQLWDTTVNPETRRLLQVRIEDAVAADQIFSTLMGDVVEPRREFIEDNALKVANLDV
>NZ_CP013141.1|WP_169795618.1|1461324_1461492_-|hypothetical-protein
MFNVAGESRGGLSRQADPGLKPHSDHVPRETWDLTGHAGFKNPGFATISEAWTAL

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Crispr_ID: NZ_CP013141_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_5

1527526-1527728

Orphan

Consensus_repeat	Method
CGGTCGCGACTCACGTCGCTCCTAC	CRISPRCasFinder
GGTCGCGACTCACGTCGCTCCTACAGGGAAACTCTACCCTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013141_5

>merge|NZ_CP013141|5|1527526-1527728|CRISPRCasFinder,PILER-CR
CGGTCGCGACTCACGTCGCTCCTACAGGGAAACTCTACCCTTGCTTCTGAGATGCGCCGCAAGACCGCCACAGCGCGGTCGCGACTCGCGTCGCTCCTACCCACCGCGACAGTTCGAGCCTACGATCAATGACGACGGCTGTGCGATTTCTACGCGTCCCTTGGTCGCGACTCACGTCGCTCCTACAGGGAAACTTTGCCCTT

>NZ_CP013141|5|4|1527526-1527711|CRISPRCasFinder
CGGTCGCGACTCACGTCGCTCCTAC	AGGGAAACTCTACCCTTGCTTCTGAGATGCGCCGCAAGACCGCCACAGCG
CGGTCGCGACTCGCGTCGCTCCTAC	CCACCGCGACAGTTCGAGCCTACGATCAATGACGACGGCTGTGCGATTTCTACGCGTCCCT
TGGTCGCGACTCACGTCGCTCCTAC

>NZ_CP013141|5|3|1527527-1527728|PILER-CR
GGTCGCGACTCACGTCGCTCCTACAGGGAAACTCTACCCTT	GCTTCTGAGATGCGCCGCAAGACCGCCACAGCGC
GGTCGCGACTCGCGTCGCTCCTACCCACCGCGACAGTTCGA	GCCTACGATCAATGACGACGGCTGTGCGATTTCTACGCGTCCCTTGGTCGCGACTCACGTCG
CTCCTACAGGGAAACTTTGCCCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_144436742.1\|1524099_1525560_-\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|182554
NZ_CP013141.1\|WP_057973089.1\|1523561_1524065_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
NZ_CP013141.1\|WP_082638340.1\|1525588_1526731_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NZ_CP013141.1\|WP_082638338.1\|1516287_1516710_+\|Rnf-electron-transport-complex-subunit-RnfB	unknown	unknown	gnl\|CDD\|181550
NZ_CP013141.1\|WP_057917582.1\|1530923_1531754_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP013141.1\|WP_031373460.1\|1529412_1529793_-\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
NZ_CP013141.1\|WP_057917583.1\|1529941_1530802_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP013141.1\|WP_031373455.1\|1534304_1534628_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|378771
NZ_CP013141.1\|WP_057971109.1\|1521716_1523474_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NZ_CP013141.1\|WP_057917580.1\|1532557_1533898_-\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|236939
NZ_CP013141.1\|WP_082638339.1\|1518553_1519573_-\|DUF1684-domain-containing-protein	unknown	unknown	gnl\|CDD\|225894
NZ_CP013141.1\|WP_057971107.1\|1517280_1518468_-\|TraB/GumN-family-protein	unknown	unknown	gnl\|CDD\|350614
NZ_CP013141.1\|WP_057971106.1\|1516706_1517267_-\|DUF4303-domain-containing-protein	unknown	unknown	gnl\|CDD\|372922
NZ_CP013141.1\|WP_057971108.1\|1519574_1521470_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP013141.1\|WP_057971112.1\|1534887_1535568_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057917578.1\|1535646_1536180_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225854
NZ_CP013141.1\|WP_057971111.1\|1531907_1532435_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|238269
NZ_CP013141.1\|WP_057971113.1\|1536199_1537105_-\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP013141.1\|WP_082638341.1\|1527887_1529399_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NZ_CP013141.1\|WP_057971104.1\|1514060_1516154_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_144436742.1\|1524099_1525560_-\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|182554	PRK10565, PRK10565, putative carbohydrate kinase; Provisional.	9.03986e-146
NZ_CP013141.1\|WP_057973089.1\|1523561_1524065_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	1.94413e-43
NZ_CP013141.1\|WP_082638340.1\|1525588_1526731_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP013141.1\|WP_082638338.1\|1516287_1516710_+\|Rnf-electron-transport-complex-subunit-RnfB	gnl\|CDD\|181550	PRK08764, PRK08764, Rnf electron transport complex subunit RnfB.	1.23619e-70
NZ_CP013141.1\|WP_057917582.1\|1530923_1531754_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	1.10377e-148
NZ_CP013141.1\|WP_031373460.1\|1529412_1529793_-\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	3.50514e-74
NZ_CP013141.1\|WP_057917583.1\|1529941_1530802_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	1.79322e-149
NZ_CP013141.1\|WP_031373455.1\|1534304_1534628_+\|ferredoxin-family-protein	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	1.85361e-18
NZ_CP013141.1\|WP_057971109.1\|1521716_1523474_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	2.3214e-63
NZ_CP013141.1\|WP_057917580.1\|1532557_1533898_-\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	6.29809e-160
NZ_CP013141.1\|WP_082638339.1\|1518553_1519573_-\|DUF1684-domain-containing-protein	gnl\|CDD\|225894	COG3358, COG3358, Uncharacterized conserved protein [Function unknown].	3.27679e-60
NZ_CP013141.1\|WP_057971107.1\|1517280_1518468_-\|TraB/GumN-family-protein	gnl\|CDD\|350614	cd14789, Tiki, Tiki homology domain antagonizes Wnt function via cleavage of amino-terminal residues. Tiki is a membrane-associated metalloprotease that inhibits Wnt via the cleavage of its amino terminus, diminishing Wnt's binding to receptors. Wnt is essential in animal development and homeostasis. In xenopus, tiki is critical in head development. In human cells, TIKI inhibits Wnt-signaling, which is important in embryogenesis, homeostasis, and regeneration. Deregulation of WNT contributes to birth defects, cancer and various diseases. TIKI homology domains are part of the TraB family and are related to the Erythromycin esterase, GumN plant pathogens, RtxA toxins, and Campylobacter Jejuni heme-binding, Chan-like proteins. TraB/PrgY are identified in gut bacterium Enterococcus faecalis, but its function has not been well characterized. Plasmid-borne, TraB has been implicated in the regulation of pheromone sensitivity and specificity. Based on homology to TIKI activity, it has been proposed that TraB acts as a metalloprotease in the inactivation of mating pheromone. The TIKI/TraB family has 2 conserved GxxH motifs and conserved glutamate and arginine residues that may be catalytic.	2.27376e-85
NZ_CP013141.1\|WP_057971106.1\|1516706_1517267_-\|DUF4303-domain-containing-protein	gnl\|CDD\|372922	pfam14136, DUF4303, Domain of unknown function (DUF4303). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 169 and 192 amino acids in length.	2.24711e-23
NZ_CP013141.1\|WP_057971108.1\|1519574_1521470_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP013141.1\|WP_057971113.1\|1536199_1537105_-\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	1.93335e-130
NZ_CP013141.1\|WP_057917578.1\|1535646_1536180_-\|hypothetical-protein	gnl\|CDD\|225854	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane].	0.000360439
NZ_CP013141.1\|WP_057971111.1\|1531907_1532435_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|238269	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.	1.12462e-63
NZ_CP013141.1\|WP_082638341.1\|1527887_1529399_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NZ_CP013141.1\|WP_057971104.1\|1514060_1516154_+\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0

>NZ_CP013141.1|WP_082638340.1|1525588_1526731_+|tRNA-epoxyqueuosine(34)-reductase-QueG
MRRFYTCRIVSQSDTRPTSPLPASADAPGSAPDYAALALRIREIAREFGFQRCGISGIELAEDEAYLLDWLEQGLHGSMDWMARHGGLRARPDELLPGTLRVISVGLDYGRRDDEDAWVTLADGERAYVARYALGRDYHKLMRQRLQRLADRLAELVGPFGHRVFVDSAPVLERALARNAGLGWIGKHTCLIDKDGGSWFFLGEIYVDLPLPIDRPASAHCGTCTRCIDICPTQAIVAPHRLDARRCISYLTIEHEGPIPVELRAPIGNRIFGCDDCQLVCPWNKFAKRNDEPDFRARNDLDRASLAQLFAWDEAEFLRRTEGSAIRRSGHERWLRNIAVALGNAPGSDEVIAALRSRREHPSEIVREHVEWALARHGVR
>NZ_CP013141.1|WP_144436742.1|1524099_1525560_-|NAD(P)H-hydrate-dehydratase
MALFDGAALRAIEAAAVAELGDAYALMARAGEAAWRELLGHWPQAMRLLVVCGPGNNGGDGYVLATHAQQAGRKVLVMRLPGHAPRGALAERAAAGYMQAGGRVVEFEGALPEADAVVDAVFGIGLSRAPDADASALIDAINAHPAPVLALDAPSGVDADRGHAYPSAVTAQRTLEFIAGKCGLRSGAALDRVGALALADLGLPRELYGVPASAHWLRAGDVPRWLSPRLRDSHKGRNGRVLCIGGDLGHGGALLLCAQAALRSGAGLLDAITREAHVAPMLARLPEAMPRAIGENDDPRTAFAAADVIAIGPGLGQQGWGRNLYRYALDSGKPLLFDADALNLLAAEPRRLPADTVLTPHPGEAARLLGSDTASVQADRFAAVRALVERYACTVVLKGAGTLVAATDRIVRVVGAGNPGMAVGGMGDVLSGVIAALRAQGLDAFDAASCGALLHSLAGDDAARDGGERGLLPSDLMPWLRRRANP
>NZ_CP013141.1|WP_057973089.1|1523561_1524065_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MHTIKLHLGDAEATDALGGALARARPAHDGEGLQVHLHGDLGAGKSTLARALLRALGVTGAIRSPTYTLVERYPLSEGGEAWHLDLYRIGDAGELEFLGLDGGEAVLWLVEWPERGRGWLPAPDLRVELAVDGEGREVELSGVSAAGQAWLGALGAGTAGYGFAADS
>NZ_CP013141.1|WP_057971109.1|1521716_1523474_-|N-acetylmuramoyl-L-alanine-amidase
MRVKGATVQKFLLGIALLAALAWNLAHASEIKGLELRSGATGTRAEIALDKNADYKVLSLKGPDRLVVDLPASSVGKSVKLPAGTGIVKSVRTGAPQPGTVRIVFDLAQPVAALKPRIEQGGSGPRLVLEWPGDGVEPKAAVAAAPAPQAPAAATPTASAAAATVDPSVESAAATSRLISELAARNAAAPAAPTTAQAPGAAPHLAAPASNPHAANPQAPNTQAAGAQLPNHQAPALVGAAAPPPAANAQQLAAQQAARQAVFEQAAQAPIPSTVASGVPTRIATGVPTRVATGVPTPMPGAATAPPAAMPESAPPAGAVKTLKDVMRGRGMRPLVIAIDPGHGGQDPGAIGQSGKREKDVTLAIGRELARQINATPGLKAYMTRDTDVFIPLPRRAQLARQAKADMFISIHADAAENRAAKGSSVYVLSLKGASSQRARWLADKENASDLVGGVRLQQTDNTLTSVLLDLTQSGHMKASEDAAGHVLSGLKQVGHNHKPHIERANFAVLRTSDMPAMLVETAFISNPEEERRLTDPSHQRALARAVLDGVNTYFTRQPPPGTMYAARAEAQLPSPGGFGGGGSP
>NZ_CP013141.1|WP_057971108.1|1519574_1521470_-|DNA-mismatch-repair-endonuclease-MutL
MPPVSIRQLPDTLINQIAAGEVVERPASVVKELVENALDAGARRVDIDLEEGGVRLIRIRDDGAGISPEELPLAISRHATSKIASLDDLEGVTTLGFRGEALPSIASVSRFALSSRRIGEDRGAMLEVDGGRVGEIAPKPHPQGTTVEVRDLFFNVPARRKFLKAERTELGHIEEWLRQLALARPDVELRVSHNGKPTRRWKGEGDLVDMGLSDTRISEALGEEFAKNALRVEHSGADLRLHGWIAQPSYNRASADQQYLYVNGRAVRDRSIAHAVKQAYADVLFHGRQPAYVLFLELDPRRVDVNVHPAKHEVRFRDARLIHDFVYRTLNDALAETRAGMAQQASAGAEAAVAGAAGSSMYAWRPQAPLGLQVQETRAGYAALYGNGGGGSAGGSTYAGGGYGANAGGGSAYAMPPREMNDGSQSPGALPHSDDQTLPPLGYAIAQLHGIYVLAESAEGLIVVDMHAAHERIGYEKLKTAHDGEGLRTQPLLVPASLAVSEREAEVAEREEATLLALGFEVTRSGPQSLTLRAVPALLAHGDVEALLRDVLADLREHGESRRVAAARDELLSTMACHGAVRANRRLTLPEMNALLREMEATERSGQCNHGRPTWARFSLPEIDRWFLRGR
>NZ_CP013141.1|WP_082638339.1|1518553_1519573_-|DUF1684-domain-containing-protein
MTAARSFARTLSGTLSAPALSALLLLGLAACDSPEQQVAQKREVARAAAVSDTFARDQQLWRQQRKDELLKPDGWASLVGLYPIDTGSHYFGSDRDNGIRLGVGPAHFGLLSLNKGRLRFIPERGQQLTLNDQPLKGAANLLADDYPAGPSKIGFDDGQGILTVIKRGDRYLLRARHAQAPTLTGFKGIDYWEPQQEWKLSAKFVAHPAGKTIDIVNIIGTIEATPNPGAIEFERDGKTYRIEALDQGGDELLLVFADRTSGHQSYSAGRFLDVARPNLQGLVTVDFNKAYNPPCAFTPFATCPLPPAENRLDLEVAAGEKTYKHDDVAPAASATAQAP
>NZ_CP013141.1|WP_057971107.1|1517280_1518468_-|TraB/GumN-family-protein
MRFLKLFVLPLFTASVLSASLTSATASAAGDVPAATAKAPPVPLLWKVSDQDNAVYLLGSFHLLRADDYPLSSDIDQAFAGAGKLVFEVAPEEMFDPTVPQRFMARARYDDGRTLSKVLPADLREKLNRVLAKNGSSLAQLDALEPWFVNLSLVLGVSQSMGFSPQLGLDQYLMRQAAEAGKPTSGLETMELQMQVMDSGPLPEQITALREFVDKPEDVPGMLDEIHSAWRNADLAMLDEKARVEMEQKTPETYRMVNVERNVAWVPQIQKMLDEPKQGDALVVVGSLHLLGNDGLVERLRAKGYTVERVCSSCTPADGPVPVIGAERAFAAKDAGKPADPKRGKDKPAKDASGKHDSGKHEASEAEAAKPGQAKHEPAKHEPARAEAKPAGPSR
>NZ_CP013141.1|WP_057971106.1|1516706_1517267_-|DUF4303-domain-containing-protein
MTAVAGFDFAALREDIVVAAAAAFAEISASQGDDPVRAFALYSDAGAMTVCPAMATADYLRRIDNEYPDERLYYRYSPSEWPLEGVGADEQFGRLCDRLREHVFALEEGDEDARFADFKTRLMDTMVESAESLRKQCFAGLGEDFVVLATISDDDEPAAELNRRVARLNSPAVAAEFAAWSRSWRD
>NZ_CP013141.1|WP_082638338.1|1516287_1516710_+|Rnf-electron-transport-complex-subunit-RnfB
MDLIERLDRLLPQTQCGQCGYAGCRPYAEAMARGEAGVDHCPPGGDAGARSLARLLGVEAKPYDRSRGEHKPAPLALIVEADCIGCTKCIQACPVDAIIGAAKHMHTVIEPLCTGCELCVPACPVDCIVLVPAADATLGA
>NZ_CP013141.1|WP_057971104.1|1514060_1516154_+|methionine--tRNA-ligase
MSREIVVSNALPYANGPLHLGHLVGYGQADIWCRAQRMSGHRVHYICADDTHGTPIMLGAEKAGLTPEAFIAGVQVSHERDFADFGVKFDHYDSTHSAGNRSLTEGFYARLDNSGHITRRSVAQLYDPVKGMFLPDRYVKGICPNCGTPDQYGDNCENCGATYAPTELKEPRSVVSGATPELRESEHFFFEVGHFEAFLREWLAGDVATPGIKAKLHEWLDVDGGLRAWDISRDAPYFGFEIPGHPGKYLYVWLDAPIGYLSSFQALCEREGLDFWSYLARDSEAELHHFIGKDIVTFHGLFWPAVLHGAGFRAPTRLHVNGYLMVNGEKMSKSRGTFIQARTYLDVGLDPEALRYYFATKTSGGVEDIDLNLSDFVARVNADVVGKFVNLASRCAGFIEKRFDGQLSATLPDAAMYQRFVAQLTPIAEAYARNEAASAVRLTMALADEANKYIDEHKPWVLAKQEGAEAHLQAVCTQGLNLFRVLAAALKPVLPRVSAEAEAFLAAPVTLWEDLAEPLLDHRIGAYVPLFTRIDTKLIDTMIEASKESLAASAPAAAADGKTPAAAVAAVSSTPAVVPSSSNAAAVATVGIDEFAKLDLRIGTVRVCEFVEGSDKLLRFELDAGELGTRQIFSGIRGSYAEPDKLVGRKVVFIANLAPRKMRFGISEGMILSAGFDGDGLHLLDVDSGAAPGMPVK
>NZ_CP013141.1|WP_082638341.1|1527887_1529399_-|glucose-6-phosphate-isomerase
MSDDARLTELRAEVGRVTQTPLPALIAADPARATDFTVKVGPVYASFARQHYDRAALEWLFRAAEAADSVGRLRALFDGEIVNVTEGRPALHSALRSDLSATDTARAAHAQALEARQRMRAVVDALAASEVTDIVSVGIGGSDLGPRLAVDALTGATPGRFRVHFLSNVDGHAAQRVLAGLDPKRTAALLISKTFGTQETLLNGGILRDWLGDDSRLYAISANVGRAADAFNIPSERILPMWDWVGGRYSLWSAVGLPIALAIGMDAFEQFLDGAAEMDAHVLRTPLQSNLAAWHALTAIWNRNGLGYATQAVLAYDDRLKLLSNYLQQLVMESLGKSVRLDGSAVAGDTVAVWWGGVGTDTQHSFFQALHQGTSIVPADFIGVVRSDAPYAQNHRALQSNLLAQTEAFANGQGSDDPHRVYAGGRPSTTILLDALTPHALGALLAMYEHSVYLQSVFWGINAFDQFGVELGKQVASRLLPALAGDAEADDPVTRELIRRLRG
>NZ_CP013141.1|WP_031373460.1|1529412_1529793_-|aspartate-1-decarboxylase
MQLNLLKAKIHRATVTHAELHYEGSCAIDGRLLDISGIREYEQVHIYNINSGHRFSTYAIRGEEGSGVISVNGAAAHKAQPGDLVIICAYGICDEAEAAKYKPTLVYVDRNNQLTHTNTSMPAQAA
>NZ_CP013141.1|WP_057917583.1|1529941_1530802_-|pantoate--beta-alanine-ligase
MLTVDQLGALRSTLETWRLAGQRIAFVPTMGNLHAGHHSLIRLARERADRVVASVFVNPTQFGPNEDYGRYPRTPEADAEGLRASGCDLLWLPSVETMYPFGAEHTVQVRVPQVTETLEGAHRPGHFDGVATVVARLFNQVRPDVAVFGRKDYQQLAVIRYMVRDLAFPIEIVGADTRREADGLALSSRNQYLSESERPQAVAIHACLQWMREASQAGQSREAVEAGALERLSAAGFAVDYAVVRRPDLGLPVLGEGGAGESGARVALIAARLGRTRLIDNLEFET
>NZ_CP013141.1|WP_057917582.1|1530923_1531754_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MYTSAPTDKPAAKAWTVPMLADAKRDGRKLVMLTAYDASFARTMDAVGIELVLVGDSLGMVVQGQNSTLPVTTADMAYHTACVARGLSKALLISDLPFQSDATPERALDAATQLLQAGAAMVKLEGAGHKLEVIRFLVEREIPVCAHLGLTPQSVLRLGGYKLQGRDDATAAKLRADARAVAEAGATLLVLECVPTGLAAAITADLAIPTIGIGAGPQCDGQVLVLHDLLGVNSGHRRPKFVKDFLAESGSVAGAFQAYADAVRSGAFPDAAHSYD
>NZ_CP013141.1|WP_057971111.1|1531907_1532435_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MTWTASAPSTVAFVGLGSNLGDSAEVLRAAARALDIAPQTRLLRLSSLYRTPAWGVTEQPDFVNAVAMLETGLSAQHLLAAMFAIEREAGRARRADGSDRWGPRTLDLDLLLYGDAVIDEPGLHVPHPHLHERAFALVPLLEIAPDAVIARRGPAREALQCIDAGAIRRLDAVDS
>NZ_CP013141.1|WP_057917580.1|1532557_1533898_-|polynucleotide-adenylyltransferase-PcnB
MQADNSSFHTSLRVIPRDQHNVSRKEISPNALRVLYRLRDSGFGAFLVGGAVRDILVGGHPKDFDVATDATPEQVKGLFRNCRLIGRRFRLAHVVYGREIIEVATFRANIDDGSGDRETDTGGRLVRDNVYGSIEDDAVRRDFTANALYYAVEDFSVRDYVGGFEDVQNRLMRLIGDPETRYREDPVRMLRAVRLAAKLGFEIEAATAAPIPHLAPLLADAAPARLFEECLKLFLSGHAVESFLGLERFGLLSALLPESAAALKSNRSGALRRMVLEGLKGTDARVANDEPVSPAFLFALLLWPAYCRDLMGLQAQGVHTAEAQRRAADRVTLHQLSTIALPRRFSLPMQEIWLLQSRFQQRQRKRVFRLLSHPRFRAAFDFLSLRMAASDEHAADVEFWREAQQHPGELLAHQEAHAHLDDEEGGEDRAPRKRRRRRRGAPTASE
>NZ_CP013141.1|WP_031373455.1|1534304_1534628_+|ferredoxin-family-protein
MPFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPINAIYPEDDVPAGQEPFVALNAELSKSWPVITTRKDGPPDAKDWENKPGKLDLLER
>NZ_CP013141.1|WP_057971112.1|1534887_1535568_+|hypothetical-protein
MPHARLRLNLLLALCAAPILAGAQPRTLTLAQLDLSRLDLSKLDLSKLDLSQVDLSQLDPSAIAAGASDTLMRAPDGSIDELFQALHQASRHPRDAATLCALFDPAADRSPQALASAAQNLGDASRQGFANALLGIAANGLQNPRQPYDAGAAKQTLKSAGTTAMLLHDGFMGALNADASEPGGREARCQAFGWLLDALKGMPRAQRASAMRLMLNEGLTRWSPPR
>NZ_CP013141.1|WP_057917578.1|1535646_1536180_-|hypothetical-protein
MRSNVSLSRAVVAGLLLAMVATSGCSWFRKGNKLYAETPENRPLEVPPDLDQPRTDGAMAVPGGSVTASGLAASRPTQAAPGAPASSANGFTVSGNRDAVFNQVGEALGKVEGLNIASRAQLLGAYDVNYEGSNFLVRISAADAGAYVSAVDPRGLPATGEAPAKLIANLKAALGGR
>NZ_CP013141.1|WP_057971113.1|1536199_1537105_-|4-hydroxy-tetrahydrodipicolinate-synthase
MRLSGSITALATPFTASGEIDLDAWHKLLAMQLEGGTQAVVVAGSTGEAAALYDAEYDAVLRAAVEFVAGRIPVLAGTGLSNTAKTIELTRHVAALGADAALVVTPPYVRPTQAGLVAHFRAIADDDALPVVLYNVPGRTGGDLLPETVAELAGHPGIVGIKEAVSDPQRMQALLPFKSEGFAVLSGDDPTACRAMLAGADGIISVGSNVLPAAFRRLADLARAGRGAEAEAWDARLRPAYDFLGLEPNPIPVKALLSAQGIGHGLRLPLQSLSAAHQDAARRTAGLVVELEHVCRDTLAA

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Crispr_ID: NZ_CP013141_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_6

1576907-1577005

Orphan

Consensus_repeat	Method
TCGGCGGCGGCCTGCTCGGCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013141_6

>merge|NZ_CP013141|6|1576907-1577005|CRISPRCasFinder
TCGGCGGCGGCCTGCTCGGCGCGGTGCTCGACCAGGACGGCGACGGCCAGTTGGGCCTGGGCGATCTGCTCAAGATCGGCGGCGGCCTGCTCGGCGGCG

>NZ_CP013141|6|5|1576907-1577005|CRISPRCasFinder
TCGGCGGCGGCCTGCTCGGCGCGG	TGCTCGACCAGGACGGCGACGGCCAGTTGGGCCTGGGCGATCTGCTCAAGA
TCGGCGGCGGCCTGCTCGGCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057917549.1\|1586329_1586995_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP013141.1\|WP_057917561.1\|1565257_1566271_+\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350620
NZ_CP013141.1\|WP_057917553.1\|1581657_1582173_-\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP013141.1\|WP_057971121.1\|1558893_1559127_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057917554.1\|1579506_1579872_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057917557.1\|1573949_1576130_+\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NZ_CP013141.1\|WP_057917552.1\|1582217_1582475_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NZ_CP013141.1\|WP_057971124.1\|1567246_1569790_+\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP013141.1\|WP_057917564.1\|1559888_1560830_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366181
NZ_CP013141.1\|WP_082638345.1\|1580708_1581545_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP013141.1\|WP_057917565.1\|1559126_1559768_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP013141.1\|WP_144436380.1\|1582752_1583658_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057917550.1\|1583974_1585342_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP013141.1\|WP_057971125.1\|1570049_1573427_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223616
NZ_CP013141.1\|WP_057971128.1\|1585493_1586285_+\|cytochrome-c-biogenesis-protein-CcsA	unknown	unknown	gnl\|CDD\|226621
NZ_CP013141.1\|WP_057971123.1\|1566317_1567022_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057917555.1\|1577124_1577544_-\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP013141.1\|WP_057971122.1\|1562181_1564710_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544
NZ_CP013141.1\|WP_031371752.1\|1580164_1580572_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP013141.1\|WP_057917563.1\|1560963_1561464_-\|CinA-family-protein	unknown	unknown	gnl\|CDD\|334938

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057917549.1\|1586329_1586995_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.7057e-13
NZ_CP013141.1\|WP_057971122.1\|1562181_1564710_-\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	1.77623e-47
NZ_CP013141.1\|WP_057917561.1\|1565257_1566271_+\|M15-family-metallopeptidase	gnl\|CDD\|350620	cd14845, L-Ala-D-Glu_peptidase_like, L-Ala-D-Glu peptidase, also known as L-alanyl-D-glutamate endopeptidase. This L-Ala-D-Glu peptidase family includes L-alanyl-D-glutamate peptidase (bacteriophage T5) (also known as L-alanoyl-D-glutamate endopeptidase), and Ply118 and Ply500 L-Ala-D-Glu peptidase. Bacteriophage endolysin degrades the peptidoglycan of the bacterial host from within, leading to cell lysis and release of progeny virions. The bacteriophage endolysin Ply118 cleaves between L-Ala and D-Glu residues of Listeria cell wall peptidoglycan. This family belongs to the MEROPS peptidase M15 subfamily C.	5.77678e-45
NZ_CP013141.1\|WP_057917553.1\|1581657_1582173_-\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.26056e-62
NZ_CP013141.1\|WP_057917557.1\|1573949_1576130_+\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NZ_CP013141.1\|WP_057917552.1\|1582217_1582475_-\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	5.80376e-44
NZ_CP013141.1\|WP_057917564.1\|1559888_1560830_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.00563e-14
NZ_CP013141.1\|WP_082638345.1\|1580708_1581545_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	3.21865e-148
NZ_CP013141.1\|WP_057917565.1\|1559126_1559768_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	6.02437e-93
NZ_CP013141.1\|WP_057917550.1\|1583974_1585342_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP013141.1\|WP_057971125.1\|1570049_1573427_+\|AAA-family-ATPase	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	7.11125e-104
NZ_CP013141.1\|WP_057971128.1\|1585493_1586285_+\|cytochrome-c-biogenesis-protein-CcsA	gnl\|CDD\|226621	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.01059e-66
NZ_CP013141.1\|WP_057917555.1\|1577124_1577544_-\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	2.5848e-27
NZ_CP013141.1\|WP_057971124.1\|1567246_1569790_+\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP013141.1\|WP_031371752.1\|1580164_1580572_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.20233e-67
NZ_CP013141.1\|WP_057917563.1\|1560963_1561464_-\|CinA-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	6.03918e-67

>NZ_CP013141.1|WP_057917557.1|1573949_1576130_+|catalase/peroxidase-HPI
MSNESKCPFNHTAGGGTSNRDWWPNQLNLKVLHQQTPHADPMSEGFDYAEAFKSLDLAAVKKDLHALMTDSQEWWPADFGHYGPLFIRMAWHSAGTYRTFDGRGGAGAGQQRFAPLNSWPDNGNLDKARRLLWPIKQKYGNKISWADLMILTGNVALESMGFKTFGFAGGRADVWEPEEHVYWGTETTWLGDKRYSGDRVLENPLGAVQMGLIYVNPQGPNGNPDPLAAARDIRETFARMAMDDEETVALIAGGHSFGKTHGAGPESHVGREPEGGELEQQGLGWASSFGSGLGGDSITSGLEVTWTSTPTQWSNQFFENLFGYEWELSKSPAGAHQWIAKDGAGADSIPDAFDPNKRRAPTMLTTDLSLRFDPAYEKISRRFLENPDQLADAFARAWFKLTHRDMGPRVRYLGPEVPAEALIWQDPVPAVDHPLIDEQDIAALKSKILASGLPVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAQLAKVLSVLEAIQQDFNAGQSGGKKVSLADLIVLAGAAGVEQAAKNAGHPVKVPFAPGRTDATAAQTDVDSFAVLEPIADGFRNYLKGKYEVSAESLLIDKAQLLDLSAPELTVLVGGLRMLGTNVGPSRHGVFTHRADALSNDFFVNLLDMGTVWRPVSDAKDVFEGRDRKTGEPKWTATRVDLVFGSHSQLRALAEVYASSDAQEKFVHDFVAAWNKVMNADRFDLA
>NZ_CP013141.1|WP_057971125.1|1570049_1573427_+|AAA-family-ATPase
MPGTDTGAHVEALLLVVGLIAGLILARLYRPQAAVVAAAADAPRADAENAPAVEQIQNEAEAPIESTSETAEAPEDRLLRLVRSIDALDERIQRPQDLLALPEFHQGVDLVASEAFNAADLVRQLSGTGYVLQSMITKALPRRSDVALDPVFEHVGQFGGYPLHFLIEYLRTRPDAGDVPKLLRHAQPWWWDFAPVRQQLRDYLQWAEQFGAAPAAPVLDELEEHAATQLRDTLKRFQSPLLEPLIEQAEHATNARRESRVLGAFGRVNASAKAQTRIVHDALARQLERLHELLSGDDAASVLVSGEHGVGKTVLIDLLAERLQAEGWLVFEASAAEILSGQSYIGELEERVREMLGVLNRKRAVWRAPEFFDLLAKGSHSRDPRGLLDLVLPAIERGQLRVIGEITPRQLAQLLIARPVIKHHVEIVQLLPTETDALEAIAAEWARLEGERLGRPVADARALAEGARMAAQYFPEQQEPGRLLRLLNDALQSALAETSPALPLDPERLLATIAQRSGLPLDVIDDRQSLDLDRLRAFFRQRVIGQDEAVDALLDRIAMLKAGLIDSSRPIGVFLFAGPTGTGKTELAKALGELLFGSDERLLRLDMSEFQSEDSAWRLTADEGGQSGVRSLTSRIREQPFSVVLLDEFEKAHPKVWDLFLQVFDDARLSDRSGHTADFRHSIIILTSNVGSTISRSAGPGFTSARGGYSRDAVEKALFETFRREFLNRLDRIVLFNPLDRSLMREILHKELKRVLTRRGLRNRDWAVEWEPSAIEFLLDRGFTPDLGARPLRRAIEHYLLAPLARSIVEHRAPQGDQFLFVRSAGDQLEVQFIDPDASRRNDGAAAEVVAPADAGDLRDLVHAPSAAAAAVARLDARLQQLDQTVSAQDWVSAREADYARMAEADFWNAGDRHPVLDRIERRDRIESALDTAQRMRQRLREDGGNDEFAGRIAQLLFLLGLAVDAVREQRPQDALIEIDTDEAAHLRHGPDLRLWWQRLLAMYLAWAQRRNMRVEVLRQDAERCKAWLAVSGFGAFDLLQAESGLHVLEDQEDGVTRRVSLSVQVAPDLPGRARVAQAAAEGERRISRRYRESPSPLVRDGVRGWRSGRLDRVLGGEFDVMQGG
>NZ_CP013141.1|WP_057971124.1|1567246_1569790_+|DNA-mismatch-repair-protein-MutS
MRQFFAAKAEHPDVLMFFRMGDFYELFYDDARKAARLLDITLTQRGNSAGQPIPMAGVPHHSAEGYLARLVALGESVAICEQIGDPALAKGIVERKVVRIITPGTVTDEALLNERRDTLLLAVARGKHAYGVAWADLASGRFLVNEVASEDALEAELARLEPAELLVADEDGWPPFVAERSGMRRRPPWLFDVDSGRRQLLRFFGLHDLSGFGLEDKPLAIAAAAALLGYVEETQKQRLPHLTSIAIESGDGAIAMNAATRRHLELDSRVDGDSRTTLLGVLDSTVTPMGGRLLRRWLHRPLRDRGVLRHRHQAVATLIESRAGDDVRERFRALGDLERILSRIALRSARPRDLSTLRDGLGLLPDVRATLAPLDAPRLNALGAELGEHDAHAHLLAEAIVPQPPVLARDGGVFATGYDAELDELRTLSTNADQFLVDLEARERASSGIATLKVGYNRVHGYYLEISKGQADKAPTHYTRRQTLSNAERYITEELKQFEDKVLSARERSLARERLLYEQLLDALNERLEPLKHCAAALAELDVLCGFAERAQALDWSQPELGDTPGLRIERGRHPVVEAVRKDPFEPNDLILDEDNGRRMLVITGPNMGGKSTYMRQNALIVLLAHIGSFVPAARALIGPIDRILTRIGAGDDLARGQSTFMVEMSETSYILHHATDQSLVLMDEIGRGTSTYDGLALAEACARHLAHSNRAYTLFATHYFELTALAEPGNGIANVHLDAVEHGDQLVFMHAVKDGPADRSFGLQVAALAGLPKSVVKQARGRLIELEQQGRETPKPSFATAALDQPQQFGLFATSSAALDALAKVDPDELTPKQALEALYRIKALA
>NZ_CP013141.1|WP_057971123.1|1566317_1567022_+|hypothetical-protein
MNSNSHRLCFAITCAIALLPACRAGAARPAPVSPATAEAAASPRVLAGTGAVAFHPSRPLLAWSDGKRWHVLDLHTDRVADFTGDSEIADLAYAPDGDLWLVGDRAERWRDGRRSCRSEAADLSRVLGTARDGIAAAGYGHSDGVGPLRHPVWIDTHCGITRYPGEPLPAGVADASADQGGIAGKDTRSPRAVPKGFVAPAGTSAKPIAVSHDGRWWVGGDAGRLHLYRATGGR
>NZ_CP013141.1|WP_057917561.1|1565257_1566271_+|M15-family-metallopeptidase
MDSVNGASHSSESQSTASATQTQATPSISEEREEEIRTELAQNPQAVAALDQLVADRNFGQLSEEQKVESLNAFMSAPNAATATYLQGAAEVSLNPQATPSSLTPDAGTLTLDGVTYGIQHGNLVDAQGLTVGTIRNDGTVQLASETAARSVYSDISTRVQLTEQIGTQNRTLVDLHAADPRGRLTDPNLNPEVVDRVTAVIEQARREGMNMRVDTAYRTFAEQDALYAQGRTAPGNRVTNARAGQSWHNYGVAVDLVFNNANGQPSWAETHNWDRYGEIAVAQGLEWGGNWQGLVDRPHVEYHPGFDAGDARNMLQSHRQGGLEAVWDRMGIGQIP
>NZ_CP013141.1|WP_057971122.1|1562181_1564710_-|TonB-dependent-receptor
MIARQPGRKSLSLAIALGVASLAATAQAQQTAAAPAEEEATTLAGLTVTAQKREEAMQDVPISITALPEQLLQDTGVRDVKDLQVLVPGLTVSSTQSEVQTVARIRGIGTVGDNAGLESSVGVVIDGVYRPRNGVGFGDLGEIERIEVLKGPQGTVFGKNTSAGVINVITRRPSYDTTVEGELTIGNYGAVGLAGSFNTALGENAAFRVYAGKRKRDGFTDVEIGRGPRGEREDGDQNFHTLRGQLLLEPTENLDINFIADYSSREENCCVGLTTVRGPTSAIINALVGGTGVAPVADPFARVAWSNRPTTQDIKDKGVSAEVNWITPWFGGATLTSITASRDWQAMNGLDFDFTTADLIYRNPDPDESFTGFKQFSQEFRLTGATDKLDWMFGLFYADEDLKRNDSYSLGAHYEPYLSTAVLSQIAARFPAGLINTANAATFLSQASGRPFGSSFGGLGALDRYQQNSKSVALFTNNTWHATDALDITLGLRYTKENKELDSVYSNPNGGLGCGAALANPTRVGAALAARGVPAAARAALVQQVVGFMCLPWANTLHNGRVTNQERDEKEWSGTIKAAYRWNEHVMGYASAARGYKAGGFNLDRVQSSNGLSSGTAGIAPVNDTSFPGEFVDSYELGAKTTWADGNLLLNATLFHQTYTDFQLNSFLGTSFVVRSIPEVVSQGIDTEILWQTGLKGLMLQGGLMYADTKYGNDPLPDADLAKLPGARASFAPLWSASASATYQWDFGASLIGRFNIGAKYSSDYNTGSDLDPEKGQEAYTVVNARLGIGAKNRRWMVEAWAMNLTDEEYKQVGFDAPLQTGSWNAFLGAPRTYGVTLRVMY
>NZ_CP013141.1|WP_057917563.1|1560963_1561464_-|CinA-family-protein
MTPDTSDTALRGLAERLGEAARINHHMLVTAESCTGGWIAKTLTDIAGSSAWFGCGIVAYSYEAKQSLLSVRPQTLEQYGAVSRETVIEMVSGALANTGATIAVAVTGIAGPGGGTDDKPVGTVWIAWKRRGGYPMAEVFHFDGDREAVRRKTVAAALHAMQSLTG
>NZ_CP013141.1|WP_057917564.1|1559888_1560830_+|MarR-family-transcriptional-regulator
MTGVAETADVDAVRAFNRFYTRRIGVLQEDLLDSAFPLTQARVLFELAQREPVAAREIGEALGLDPGYLSRILQGFANDGLVEKARSEQDARSFVLTLSAKGREAFAVLDRSSHESTAAMLSALSALDRDRLLRAIRDAEQALSAPSLPAAQRLLVREHRIGDIGWAIERHGRLYADEYGWNGEFEALVATLFARFATRHDPQHERCWVAELDGERIGCVFVVRNEDDAATAQLRCLLVDPRARGLGVGRRLVETCIAFARDAGYRRMLLWTNDVLSSARKIYEGCGFSLIEQAPHHSFGHDLVGQVWTRALD
>NZ_CP013141.1|WP_057917565.1|1559126_1559768_-|transcriptional-repressor-LexA
MSLTDTQQAILAMIAERIDTEGFPPSQTEIAKAFGFKGVRAAQYHLDALETAGAIERMPGRARGIRVLQPPPQAQHELGLVSANEEAIRLPVLGRVAAGAPIGADAGADNYVLLDRNMFFPSPDYLLKVKGDSMRDEGIFDGDLIGVHRTRDARSGQIVVARIDDEITVKLLKIGKDRIRLLPRNPDYAPIEVQPDQDFAIEGLYCGLVRPNR
>NZ_CP013141.1|WP_057971121.1|1558893_1559127_-|hypothetical-protein
MARAKPDPNVDRYGSMRACAAVPAAQAALQGLDESISAAFSRGNPTLAQAAARLTAVAASDNLLPGDAVSVSAIRLL
>NZ_CP013141.1|WP_057917555.1|1577124_1577544_-|RNA-binding-S4-domain-containing-protein
MSKQEIPSPPPQASVRLDLWLWAARFFKTRSLARQAVETGKVEIGGQRGKASRALRVGDALRIARGEEIFEIAVLGLSDTRGPASVAQSLYAETEASRLAREQARAMRVAERNGYRAPETKPDKRARRLIKALGDIDAL
>NZ_CP013141.1|WP_057917554.1|1579506_1579872_-|hypothetical-protein
MNPGLSEGDICTYLRSDGAWGFFWVQRIDALPDGRDALSLRKFDTHTAEEVLREHVEEVAELKSLRLLGHFPIVGTRVAEVEPRVIGHLPVRESDLEGYRIWREAFDKGEAGVFTLPLQDI
>NZ_CP013141.1|WP_031371752.1|1580164_1580572_-|50S-ribosomal-protein-L19
MNKPSIHTLLQNFEAEQIQRKLPDFSPGDTVVVNVKVKEGNRERVQAYEGVVIAKKNGGLNSSFTVRKISHGFGVERVFQTHSAIIDSVDVKRRGKVRAGKLYYLRGLEGKKARIKEDLAAYARAKSAAAAAAAE
>NZ_CP013141.1|WP_082638345.1|1580708_1581545_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MRIDVISLFPEFVAQCAAFGVVGRAGERGLLSLHGWNPRDYAEGNYRRVDERPFGGGPGMVMLIEPLRAAIRAARAADPAPARVVYMSPQGVRLGQAKVRELAAHERLILLCGRYEGVDERLIQAEVDEEVSIGDYVLSGGELAAAVIVDAVARLQEGALNDAESAVQDSFEDGLLDCPHYTRPVEHELGGVPAVLMSGNHAHIARWRRQQSLGRTWQRRPDLLDEAGLSKADRKLLEAYRAELAAAEAAAEPGEGGAGSVSSADQGPAEGPGPGRPS
>NZ_CP013141.1|WP_057917553.1|1581657_1582173_-|ribosome-maturation-factor-RimM
MTDSTRRILLGRVLGAFGLRGEAKLESWTEPRVAIFRYQPWIVRDPQGRERELSGVRGRESGKYLIANFPEVTDRDTVEAMHGTEIYVPRSALPPPKAGEYYWVDLEGLRVVTTEGVSLGTVSHLFSTGANDVLVARDDTRERMIPFVLPQYVVSVDFEANLVTVDWDPEF
>NZ_CP013141.1|WP_057917552.1|1582217_1582475_-|30S-ribosomal-protein-S16
MVKIRLTRGGAKKRPFYHIIVTDSRSARDGRNIERVGFYNPVANGAEKRVELNVERVKHWVSQGAQLTEKVADLYKQAVKAAPAA
>NZ_CP013141.1|WP_144436380.1|1582752_1583658_-|hypothetical-protein
MKQLPVRCAGIALAAAAALAAPAASAATVFSFTSQAGDSVGLGESKVYTEADSTISLSGDSRHIIVRVEDGSDNWYVSLGAPVDQKFEVRRFLDAENPTRRTGRAPYVYLANNGRRCDDAWGEIRIQQFETDADDNITALEATVLQHCDSAAAPVLAAVIRHNVEPLSLKLDGDPGDFVGEGIDKTYYGDTTLFQLWGDAQGAGYTASGSRDRWSAELYPPVGQALHVGTYAIAEMADASHAGFRFERPTRRCPQISGGTLEIKAVEFDPATGAMTGLHAEFVQRCDGSSEALRGTIRYQA
>NZ_CP013141.1|WP_057917550.1|1583974_1585342_-|signal-recognition-particle-protein
MFESLTQRLSGTIERLRGRGRLTEENIRESLREVRIALLEADVALPVVQALIERIKIRAVGQEVLKSLTPGQALIKVVRDELTTVMGSQAADLNLNVPAPAVILMAGLQGAGKTTTVGKLAKHLRERRKKKVMVVSADVYRPAAIEQLKQLAEQVEVLFFPSDASQKPEDIVRAAIADARKSYVDVLLVDTAGRLAIDEAMMSEIKALHAAAAPVETLFVVDSMTGQDAAITAKAFSEALPLTGVVLTKTDGDARGGAALSVRYVTGRPIKFIGVGEKPDGLDVFHPDRVASRILDMGDVLSLVEQVEQQVDKDKAQKLAEKVAKGKKFDLNDMKDQLEQMQNMGGLHGLMDKLPGMGQIPESVKNQVTGKEVPRMVAIINSMTKKERRNPGLLNGSRRARIAKGAGLTPADVNKLMKQYQQMEKMMSKLSGGGMKGLMRGMKGMMGGRGGMPFR
>NZ_CP013141.1|WP_057971128.1|1585493_1586285_+|cytochrome-c-biogenesis-protein-CcsA
MTIVLIAVALYLVASGLLIAAVRHDAGRQARVWLLPANLAVLLHGAAHFFAWRAAGGADLHFFAALSLVGLGMAALTAIVGASGRMAALGVVVFPLAALMLGAYQFTGHVQHPAPLDWRLQLHAWFALLAYATLAVAALFALMLWLQERALRRREFHGWLRALPPLVELESLLFRTIAVGFALLTATLLTGVLFVENLFAQHLVHKTVLSVLSWLAFGGLLLGRWRYGWRGTTAVRWTLAAMILLVLAFFGSKFVLELVLRRT
>NZ_CP013141.1|WP_057917549.1|1586329_1586995_+|CPBP-family-intramembrane-metalloprotease
MDRWIKSLSARNEFVFVLALAFAWPVLGSLTAVAYPQPPTPIDGAGLASILSLEIPVLAVLAVFLSLRGWNLARLGPAPTKTDLPLGLALAVLTAMLFWLLQALALAFGLSLPSVDEAVPIASDIGWPMRLAASAVNGFYEEALVCGYLITAMRDRRSTWTAIHLSTAIRTAYHLYQGSVGVISIVPMGLLYAWLYARTGRLWPLVVAHIVLDFWALSLPS

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Crispr_ID: NZ_CP013141_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_7

2362617-2362723

Orphan

Consensus_repeat	Method
TGGTCGCGGCTTACGCCGCTCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013141_7

>merge|NZ_CP013141|7|2362617-2362723|CRISPRCasFinder
TGGTCGCGGCTTACGCCGCTCCTACACGCGATGGTTATCGGCCTCGAACGATGACGACGACGCTGATTTTCTGCGCGTCCCGTGGTCGCGGCTTGCGCCGCTCCTAC

>NZ_CP013141|7|6|2362617-2362723|CRISPRCasFinder
TGGTCGCGGCTTACGCCGCTCCTAC	ACGCGATGGTTATCGGCCTCGAACGATGACGACGACGCTGATTTTCTGCGCGTCCCG
TGGTCGCGGCTTGCGCCGCTCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057916812.1\|2353420_2353621_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|182452
NZ_CP013141.1\|WP_082638467.1\|2367007_2367958_-\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NZ_CP013141.1\|WP_057916804.1\|2366004_2366946_-\|amidinotransferase	unknown	unknown	gnl\|CDD\|224747
NZ_CP013141.1\|WP_057916810.1\|2355925_2356780_-\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|237057
NZ_CP013141.1\|WP_144436433.1\|2371504_2371840_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235600
NZ_CP013141.1\|WP_057916805.1\|2363250_2364663_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340430
NZ_CP013141.1\|WP_057919907.1\|2357575_2358574_-\|bifunctional-biotin--[acetyl-CoA-carboxylase]-ligase/biotin-operon-repressor-BirA	unknown	unknown	gnl\|CDD\|237010
NZ_CP013141.1\|WP_144436431.1\|2359436_2361260_-\|DegV-family-EDD-domain-containing-protein	unknown	unknown	gnl\|CDD\|273257
NZ_CP013141.1\|WP_144436432.1\|2371037_2371433_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057971444.1\|2370139_2370544_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_031372689.1\|2361410_2361692_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057916811.1\|2354303_2355227_-\|arginase	unknown	unknown	gnl\|CDD\|212515
NZ_CP013141.1\|WP_051885134.1\|2365479_2365752_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_031372696.1\|2353963_2354113_-\|entericidin-A/B-family-lipoprotein	unknown	unknown	gnl\|CDD\|227797
NZ_CP013141.1\|WP_057916809.1\|2356802_2357579_-\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|183977
NZ_CP013141.1\|WP_057919906.1\|2361720_2362458_+\|zinc-dependent-peptidase	unknown	unknown	gnl\|CDD\|377621
NZ_CP013141.1\|WP_057916802.1\|2368418_2369543_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211416
NZ_CP013141.1\|WP_057971442.1\|2358573_2359254_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NZ_CP013141.1\|WP_057916800.1\|2370650_2370956_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_031372686.1\|2364736_2365420_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_082638467.1\|2367007_2367958_-\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NZ_CP013141.1\|WP_057916804.1\|2366004_2366946_-\|amidinotransferase	gnl\|CDD\|224747	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism].	8.36735e-19
NZ_CP013141.1\|WP_057916810.1\|2355925_2356780_-\|SPOR-domain-containing-protein	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	1.54686e-06
NZ_CP013141.1\|WP_057916805.1\|2363250_2364663_-\|sensor-histidine-kinase	gnl\|CDD\|340430	cd16954, HATPase_PhoQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG. This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG. PhoQ is the histidine kinase (HK) of the PhoP-PhoQ two-component regulatory system (TCS), which responds to the levels of Mg2+ and Ca2+, controls virulence, mediates the adaptation to Mg2+-limiting environments, and regulates numerous cellular activities. Providencia stuartii AarG is a putative sensor kinase which controls the expression of the 2'-N-acetyltransferase and an intrinsic multiple antibiotic resistance (Mar) response in Providencia stuartii. The AarG product is similar to PhoQ in that it is able to restore wild-type levels of resistance to a Salmonella typhimurium phoQ mutant. However, the expression of the 2'-N-acetyltransferase gene and of aarP (a gene encoding a transcriptional activator of 2'-N-acetyltransferase) are not significantly affected by the levels of Mg2+ or Ca2+. Most proteins in this group contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have an accessory HAMP sensor domain, and some have an intracellular membrane -interaction PhoQ sensor domain.	2.1961e-49
NZ_CP013141.1\|WP_057919907.1\|2357575_2358574_-\|bifunctional-biotin--[acetyl-CoA-carboxylase]-ligase/biotin-operon-repressor-BirA	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	2.2631e-121
NZ_CP013141.1\|WP_144436431.1\|2359436_2361260_-\|DegV-family-EDD-domain-containing-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	1.54916e-74
NZ_CP013141.1\|WP_057916811.1\|2354303_2355227_-\|arginase	gnl\|CDD\|212515	cd09989, Arginase, Arginase family. This family includes arginase, also known as arginase-like amidino hydrolase family, and related proteins. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid. In vertebrates, at least two isozymes have been identified: type I (ARG1) cytoplasmic or hepatic liver-type arginase and type II (ARG2) mitochondrial or non-hepatic arginase. Point mutations in human arginase ARG1 gene lead to hyperargininemia with consequent mental disorders, retarded development and early death. Hyperargininemia is associated with a several-fold increase in the activity of the mitochondrial arginase (ARG2), causing persistent ureagenesis in patients. ARG2 overexpression plays a critical role in the pathophysiology of cholesterol mediated endothelial dysfunction. Thus, arginase is a therapeutic target to treat asthma, erectile dysfunction, atherosclerosis and cancer.	2.61839e-140
NZ_CP013141.1\|WP_057971442.1\|2358573_2359254_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	5.11371e-50
NZ_CP013141.1\|WP_031372696.1\|2353963_2354113_-\|entericidin-A/B-family-lipoprotein	gnl\|CDD\|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	8.40997e-07
NZ_CP013141.1\|WP_057916809.1\|2356802_2357579_-\|type-III-pantothenate-kinase	gnl\|CDD\|183977	PRK13327, PRK13327, type III pantothenate kinase.	1.20403e-83
NZ_CP013141.1\|WP_057919906.1\|2361720_2362458_+\|zinc-dependent-peptidase	gnl\|CDD\|377621	pfam06167, Peptidase_M90, Glucose-regulated metallo-peptidase M90. MtfA (earlier known as YeeI) is a transcription factor A that binds Mlc (make large colonies), itself a repressor of glucose and hence a protein important in regulation of the phosphoenolpyruvate:glucose-phosphotransferase (ptsG) system, the major glucose transporter in E.coli. Mlc is a repressor of ptsG, and MtfA is found to bind and inactivate Mlc with high affinity. The membrane-bound protein EIICBGlc encoded by the ptsG gene is the major glucose transporter in Escherichia coli. MtfA is found to be a glucose-regulated peptidase, whose activity is regulated by binding to Mlc available in the cytoplasm, which in turn has been released from EIICBGlc during times when no glucose is taken up. A physiologically relevant target for this peptidase is not yet known.	2.53318e-94
NZ_CP013141.1\|WP_057916802.1\|2368418_2369543_+\|hypothetical-protein	gnl\|CDD\|211416	cd11575, GH99_GH71_like_3, Uncharacterized glycoside hydrolase family 99-like domain. This family of putative glycoside hydrolases resembles glycosyl hydrolase families 71 and 99 (following the CAZY nomenclature) and may share a similar catalytic site and mechanism.	1.69661e-15
NZ_CP013141.1\|WP_057916812.1\|2353420_2353621_-\|CsbD-family-protein	gnl\|CDD\|182452	PRK10428, PRK10428, hypothetical protein; Provisional.	1.46063e-15
NZ_CP013141.1\|WP_144436433.1\|2371504_2371840_+\|hypothetical-protein	gnl\|CDD\|235600	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.	0.00852441
NZ_CP013141.1\|WP_031372686.1\|2364736_2365420_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.90097e-85

>NZ_CP013141.1|WP_057919906.1|2361720_2362458_+|zinc-dependent-peptidase
MLRRLRRPPLIDDALWRDAVAALPWARALDPQRQQRLRELAARFLHEKTISPIGELELDAQQRCLLAALCCLPLLEFGREGLRGWSQLIVYPDAFRVNRSHTDAAGVLHEWQDELIGESWEAGPLILSWADVLADCEEPRAGFCVAAHEMAHKLDLLDDLLDGTPPLPRPWQREWARDFQQAYDAFVADVDAGRDTAIDPYAAEAPEEFFAVATEYHFSDPALLRAQMPAVAAHLQRFYGVSPFA
>NZ_CP013141.1|WP_031372689.1|2361410_2361692_+|hypothetical-protein
MLRICLCLLFALASATLAVADVGAREVNKLSPNDACPESSASRKDTAARPSSRSAAPPTARDTKAKPSVHSDAEGNNRLQSPRWHNFLPGMFR
>NZ_CP013141.1|WP_144436431.1|2359436_2361260_-|DegV-family-EDD-domain-containing-protein
MAIAHPPLTAPALRRALIAGARRVIAGRDLLNRINVFPVADGDTGNNLAHTLGSLLNGALSRRSRHIGELLLRIGDDAIDGARGNSGAILAQFLHGVAEYARSRPELDAATLAAAVRHGAVNARAALAHPVEGTILSVINAFADALDEAALASRDGDPRPGFAAALIQARNALARTPQQMALLQKAGVVDAGAKGFVDLLEGIAEFVEGGPRALRVHAGVSAANEACAGHEHALAPVHDSVDPQRRWCSECLVIGSGIERRRLLAALEAIGADSLVLAGDAARMRVHAHVGAPQRLFDACAAFGAVEAMKADDMLQQQRSVERVQRVAVVTDSAADLPDVLAERYGLHVVPVRVSIDGRDYLDKIGLATAEFYRRMADSADLPRTSQPPPGDFRRAFEFLLGHRAEVLYVGLSRAVSGTLQSGEQAAARADARRVQVFDSFNAAGGQALLAWRAAELAADGAELATIVAELERLRPLTRTWAMARDISHAVRGGRIPPWAGPLVRYTGLTPVAKMKPEGRLSVSGGLFAKKDAPEAFARHLARRLPDGQRWRAIVGHCDALDDGRRLLEALRRRLALEQAWLVETGPALGAHAGRGALLVSVQPAPG
>NZ_CP013141.1|WP_057971442.1|2358573_2359254_-|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MSFAALPSSLSAAVAVAPLSVSLLLAAYAIGSLSGSLLFGRLRGVDIREQGSGNAGGTNAFRTQGLRFALVVVVFDIGKGALATWLALSFAPVGADLSVTVHGYLAAFAAVLGHVWPIWHGFRGGKGAATLVGGLMVLWPFAVPLLVLVWAVVLIVSGYVGLATVIAALCLPVLAWLGDAGLPRQWFAIAAALLVVFTHRGNLARLRAGTESRFAGARLLHRWRRS
>NZ_CP013141.1|WP_057919907.1|2357575_2358574_-|bifunctional-biotin--[acetyl-CoA-carboxylase]-ligase/biotin-operon-repressor-BirA
MDDRALLQHLIAGPATGDALASAAGQTRAAVWKRIEALREAGVAIEAKPGRGYALSQPLDLLDAEAIVAALSVPTRARLAALEVAWSIDSTNSELLRRPTPAQGVAVLLAERQTGGRGRRGRVWASPLAAHLYLSLSRSFGGGLARLGGLSLVAGIAAVEALQGLGYAAVRLKWPNDLVVLDGDGLRKLGGLLIEGGGEYAGPARAVIGLGLNVRMPAAAAASIDQPWSDLAGLSDGRALARDTIAAALLERLLPALDEFDAAGLAPFLDRYAAFDALAGQAISVHGADAIHQGIALGLADDGALRVRLDDGEERRFHAGEVSVRRAQGASR
>NZ_CP013141.1|WP_057916809.1|2356802_2357579_-|type-III-pantothenate-kinase
MSAWLFDLGNTRLKCAPLGADGRPGDAVALPHREEDVAAALAEALPAERIEVAYLASVAHPALRMAVLEALTARCRRISIARTQASFRSPQGFAAARSDTLRIAYAEPRKLGADRFLALLGAHAQGEGAALICGVGTALTIDLLDADGLHHGGLIAPSPTLMREALHARAPQLPEHGGATLDFAADTEDALASGCDGAALALIERSMASAAAKLGQRPRLLLHGGGADALAAALPSPTLAPTLVLQGLAIWAGIETSP
>NZ_CP013141.1|WP_057916810.1|2355925_2356780_-|SPOR-domain-containing-protein
MLVRALIVLLIALNIGVAAWWVARPVPAAAAEEKLPLGVARLQLAGESAPAAQAGTTAPSAPPAALVDSAGKLPASNAAPPQTDQTEAAKAEAAAAKLDAASGTPPAAPPPTAATPTAATPVPAVAETAKAQCFSIGPFADAAAADAARAKLQPLAQKLATRAQAGTSNPSRGWRVYLPPAASAEAAQATAQRIRAAGFSDLFVMGGGGADANGIALGRFRSEESARKRASSLSEAGFPARVEALGETVSATWIDAATTTSNGDALRRAAGAQRWRTVSCGTLG
>NZ_CP013141.1|WP_057916811.1|2354303_2355227_-|arginase
MSRTYPPVSLLGAPTDVGAGHRGARLGPEALRIAGLGEALAARGVDVVDRGNLDGPRNPWQKPVEGYRHLPEVVAWNRLVMEAVGAELREGRMPILLGGDHCLGLGSITAVAQHCRETGKQLRVLWLDAHADFNTSQVTPSGNIHGMPVSCLCGLGPEALTHLGGSSPAMRPDEIRQIGIRSVDRGEKQLIQQHGLDVYDMRYIDEIGMKRVMEEALEGVDENTHLHVSFDVDFLDPSIAPGVGTTVPGGPNYREAQLVMEMIADSGRLASLDIVELNPILDKRNRTAKLAVDLVESLFGKSTLMRE
>NZ_CP013141.1|WP_031372696.1|2353963_2354113_-|entericidin-A/B-family-lipoprotein
MKRLTALLLLALFSMGTLTACNTVAGAGKDVKKAGEKVEQKAEEVRDGK
>NZ_CP013141.1|WP_057916812.1|2353420_2353621_-|CsbD-family-protein
MNKDIIAGKWTQIKGKAQAKWGDLTDDVFDVAEGNSEYLAGKLQERYGWERDRAEKEVKEFGKTLN
>NZ_CP013141.1|WP_057916805.1|2363250_2364663_-|sensor-histidine-kinase
MSWGQPRSLRARQLLAASLGLLAFLALAGYALDRAFLETAESNMRQRLTSYALAYAADTDFGRGGEIIPPYDPPDPRFDRPGSGLYAEVILPNGHWDSMSAQGPVLPDGGMLKAAEETFEGPLPITEINGHAGEAYRYGRGLIWSVDGDSKSEFQYTIYILEDTSALRQQVAVFRLSLWRNLGGAGVILLLLQALIMQWSLRPLKRVIEELKRVQRGLASRMSERHPRELEPLTESINAFIESERENLDRQRNTLADLAHSLKTPLAVLRARLDDDQNGGAAIDAGLREDVDVQLRRMNDLVSYQLSRAASGGHALFAAPIAIEPHAEEIVRGLEKVYSSKGILCEFDVAEGVQFHGEPGDLQELLGNLLENAFKWANSRVLLTVQSGETAANRRPGLLLAVDDDGPGIPPEKIASILQRGVRGDERVHGHGIGLAIVQDLVRGYRGTLDVIPSEELGGARFEVKLPPGL
>NZ_CP013141.1|WP_031372686.1|2364736_2365420_-|response-regulator-transcription-factor
MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDLGIIDLGLPKMSGMELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRRAAGWSKPTLECGPVMLDLAAQTVSVNGGNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQQDFDRDSNVLEVFIGRLRKKLDPDGALKPIETVRGRGYRFAIPRSGD
>NZ_CP013141.1|WP_051885134.1|2365479_2365752_-|hypothetical-protein
MAQHDDGRGGRGHDRRDDHRSLSDAIRRVERESGGGQVLSAERIPFDGRDVNRVKVVDSSGRVRIYMDDPQQRGRRDDDRPTRRDDNNND
>NZ_CP013141.1|WP_057916804.1|2366004_2366946_-|amidinotransferase
MITRDPDVFFTQAGRLAADFGPATARAAFLVAPDGFARAEQSAGDNRYMAQAADFDPGRASAQHRELQRRLSAVLPTICFAGDPDTPDALFPNNVFATGRPDAARQPGGAPRYLVGRMRHPVRQREAGRADIRAFFGQVLGYEEVDLSLQAHPCELTGALVVDRVRGLGYAGLSERCDEAGARLMHEALGLRATLLFELAPGEYHTNVVLAVLAGRAALVSPAGFAEPALASAIAGFYAPHGMILAAAEHAAFVANSIALSADRVWMSAAAGRVLAEHTRAGLAAAGFALETVELDAIEAGGGSLRCCVGEIY
>NZ_CP013141.1|WP_082638467.1|2367007_2367958_-|tRNA-dihydrouridine(20/20a)-synthase-DusA
MMDWTDSHCRVFHRALAPHARLYTEMVHANAVIHGDRARLLAMDPVEHPVALQLGGSEPALLAQAARIGAERGFDEINLNCGCPSDRVQAGRFGACLMREPALVAASVAAMIEACDVPVTVKCRLGVDDDHRFEVFLAFVDEVAAAGCTMFVVHARNAWLKGLSPKENREVPPLRYDWAYRLKRERPQLKILVNGGIATAEEATSHLEHADGSMLGRAAYHEPYVLHRIDTAWFGGELRSRAELLRSLRPYVEAELARGVFLKHITRHMLGLFHGERGGRAFRQVLSEGAHKPGADWSLIEQALAVTESFAARDAA
>NZ_CP013141.1|WP_057916802.1|2368418_2369543_+|hypothetical-protein
MLKKSLMLACALFASNAQASWPNSADRLSKKLVFAEYHPWVATPTVDGFWARWNETGHKPNLNDVESMFWPLDGLYSEGDCAAIKSQAVDLNGNVTAAGIDVLIIDWVNVYQNEQQRVEKILSCTTTPAVVMVDQNWTVTPSFQEVITRLETVIGWYASKPDLYPTYYRDPASGAPVFIVFDPGAAGTTAQWNAKIDYYKTLSPKGIFIAGLSSNTSAAWVLASHFDGAIQLAGKTAASDESSYESTLSVLYGPGSRNQFLIGEAIPGFDDSANCYSTSPVLDRQAGVVFDTKWSGLLTTNWNGHKLDGAYVMYNNDGEGAGIEPASPIPPTRAPGFESCDGKISNRYKTYAPLPATYYLDRNAFWANQFRISP
>NZ_CP013141.1|WP_057971444.1|2370139_2370544_+|hypothetical-protein
MFDWLQFPEGRARFAGIKRGWDEQGHVNFSLELGDALHFGEIDQVFLPDLHNFNIEVISFGYPRAEVVGMPGAAAVFSPEQISVAMQLIGRLIKSGLDLDRPPNILTQTAKSKFLGELLFREGWALVRSEADPR
>NZ_CP013141.1|WP_057916800.1|2370650_2370956_+|hypothetical-protein
MLKDHPDHIERLQEVLNQVAYDGRVLLMPFDQAIWALEGRLETFIHEAKADLEAAQVDEDAQAIELARAKEDLMFRARSSNGGMKGLHDLWNYFKENEDAL
>NZ_CP013141.1|WP_144436432.1|2371037_2371433_+|hypothetical-protein
MTDDTTSTSNNSLISPPVPQRLREMLKDYPGHVERLQEVLNTVIEKPSPLTPPFEVAVWVLESRLEAFHREAVTEFEVAQANGNPELIAQADEKQRLMSKVCWKHVWLTDEALWDYFQQHQECILRRGQSQ
>NZ_CP013141.1|WP_144436433.1|2371504_2371840_+|hypothetical-protein
MTHSPLPPVPKKLQELLHSYSGHIDRLQKQLNQVAEESRSASTKLEVATWMLQGQLEEFAREAKAELEAVEATKDADAIAGAREKELLMSRACWKHVWLGDEALCNYFQQN

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Crispr_ID: NZ_CP013141_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_8

2464306-2464404

Orphan

Consensus_repeat	Method
GTAGGAGCGGCGTAAGCCGCGACCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013141_8

>merge|NZ_CP013141|8|2464306-2464404|CRISPRCasFinder
GTAGGAGCGGCGTAAGCCGCGACCGCGACCTCGCGACTCACCTCGCTCCTACACAACGCGACGCAGCAAAGGGTAGGAGCGGCGCAAGCCGCGACCGCG

>NZ_CP013141|8|7|2464306-2464404|CRISPRCasFinder
GTAGGAGCGGCGTAAGCCGCGACCGCG	ACCTCGCGACTCACCTCGCTCCTACACAACGCGACGCAGCAAAGG
GTAGGAGCGGCGCAAGCCGCGACCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057971481.1\|2456145_2457492_-\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|350376
NZ_CP013141.1\|WP_057971489.1\|2475628_2476615_-\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP013141.1\|WP_082638487.1\|2467536_2468142_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NZ_CP013141.1\|WP_057919171.1\|2468336_2469392_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP013141.1\|WP_057919173.1\|2472252_2472672_+\|DUF2752-domain-containing-protein	unknown	unknown	gnl\|CDD\|378499
NZ_CP013141.1\|WP_144436440.1\|2467036_2467396_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP013141.1\|WP_057971484.1\|2462026_2462710_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057971483.1\|2460355_2461942_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP013141.1\|WP_057971486.1\|2469851_2471750_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|235865
NZ_CP013141.1\|WP_082638484.1\|2453518_2454241_-\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NZ_CP013141.1\|WP_057919167.1\|2462963_2464262_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_CP013141.1\|WP_057971480.1\|2455714_2456110_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057971482.1\|2457488_2459249_-\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|371922
NZ_CP013141.1\|WP_057919169.1\|2466547_2466829_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057971478.1\|2452868_2453522_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP013141.1\|WP_082638486.1\|2454254_2455718_-\|TIGR04222-domain-containing-membrane-protein	unknown	unknown	gnl\|CDD\|275063
NZ_CP013141.1\|WP_057919164.1\|2459245_2459893_-\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NZ_CP013141.1\|WP_082638998.1\|2464453_2466070_-\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|235870
NZ_CP013141.1\|WP_057971487.1\|2471885_2472224_+\|CD225/dispanin-family-protein	unknown	unknown	gnl\|CDD\|377375
NZ_CP013141.1\|WP_057971488.1\|2472691_2475532_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057971481.1\|2456145_2457492_-\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	gnl\|CDD\|350376	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases. This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).	2.32364e-38
NZ_CP013141.1\|WP_057971489.1\|2475628_2476615_-\|FecR-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	5.5758e-60
NZ_CP013141.1\|WP_082638487.1\|2467536_2468142_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	7.43255e-14
NZ_CP013141.1\|WP_144436440.1\|2467036_2467396_+\|hypothetical-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	0.00349228
NZ_CP013141.1\|WP_057971487.1\|2471885_2472224_+\|CD225/dispanin-family-protein	gnl\|CDD\|377375	pfam04505, CD225, Interferon-induced transmembrane protein. This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression.	1.20025e-13
NZ_CP013141.1\|WP_057971483.1\|2460355_2461942_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP013141.1\|WP_057971486.1\|2469851_2471750_+\|MFS-transporter	gnl\|CDD\|235865	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase.	1.89089e-157
NZ_CP013141.1\|WP_082638484.1\|2453518_2454241_-\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	1.08529e-16
NZ_CP013141.1\|WP_057919167.1\|2462963_2464262_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_CP013141.1\|WP_057919171.1\|2468336_2469392_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.62361e-22
NZ_CP013141.1\|WP_057971482.1\|2457488_2459249_-\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	gnl\|CDD\|371922	pfam12147, Methyltransf_20, Putative methyltransferase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases.	0
NZ_CP013141.1\|WP_057971478.1\|2452868_2453522_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	5.85845e-31
NZ_CP013141.1\|WP_082638486.1\|2454254_2455718_-\|TIGR04222-domain-containing-membrane-protein	gnl\|CDD\|275063	TIGR04222, integral_membrane_protein, TIGR04222 domain. The majority of the proteins with a domain as described by this model have an extreme C-terminal sequence that is consists of extremely low-complexity sequence, rich in Ser or in Gly interspersed with Cys. That C-terminal region resembles ribosomal natural product precursors, although there is no evidence that C-terminal regions of these proteins undergo any modification or have any such function.	8.05717e-23
NZ_CP013141.1\|WP_057919164.1\|2459245_2459893_-\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	5.72196e-22
NZ_CP013141.1\|WP_082638998.1\|2464453_2466070_-\|FAD-dependent-monooxygenase	gnl\|CDD\|235870	PRK06834, PRK06834, hypothetical protein; Provisional.	0
NZ_CP013141.1\|WP_057919173.1\|2472252_2472672_+\|DUF2752-domain-containing-protein	gnl\|CDD\|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	2.32637e-14
NZ_CP013141.1\|WP_057971488.1\|2472691_2475532_-\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	4.13391e-38

>NZ_CP013141.1|WP_057919167.1|2462963_2464262_+|phosphoribosylamine--glycine-ligase
MKILVIGSGGREHALAWKLAQSPRIDEVLVAPGNAGTAHEEKCRNVAVAATDIDGLLKLAADEGVALTVVGPEAPLVAGVVDRFRADGRRIFGPTAAAAQLEGSKAFAKDFLARHGIPTAYYAVHTEVDAALAYLREKGAPIVVKADGLAAGKGVIVAMTLDEAEAAVIDMLSGNAFGAAGARVVIEEFLDGEEASFISMVDGKHALPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTPDVHARVMREVVMPTVDGMIADGVPFTGFLYAGLMIDQAGAPKVIEFNVRFGDPETQPVMLRLESDLLDLVEAALDGKLDSVQAQWSPRPSLGVVMAAANYPETPRAGDVIHGLTAPQPPHAKVFQAGTQLGPDGEVLTAGGRVLCVCALGDDVAQAQREAYTALAKIRWDGEFHRNDIGWRAIEREQAAKA
>NZ_CP013141.1|WP_057971484.1|2462026_2462710_+|hypothetical-protein
MNRPSLRHTLGRSIARKLLVLAMLCVVIAGWAGWQYSRRQAVDSETLGDYRADGRAITLLLVEPDVSLNLDAGLRRDSTARLARALDRRLADLGYRTQALSARSDEERFGLTAQTSARTAAIQHQARTAQTIREVGAPVLRVSLDGMKRDGREIAEQAYRIELLDPQTLQPAWRATLTWREGRYQSLALLWHLRHNRLPPPLWDSLADLAMARMREDGVIRAEALIQ
>NZ_CP013141.1|WP_057971483.1|2460355_2461942_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MTSDRLPGTPVKIRRALLSVSDKTGLLELAQALAARGVELLSTGGTAKAIRDAGLAVRDVSEVTGFPEMMDGRVKTLHPLVHGGLLGRAGTDDAVMAEHGIAAIDLLVLNLYPFEKVAANPASSFDDIIENIDIGGPAMLRSAAKNFARVAVATDPAQYAGVIAELDAADGALSAKTRFALSVAAFNRVAQYDAAISNHLSAIAEDGSAQTFPAQHNANFVKVMDLRYGENPHQQGAFYRDLYPVAGTLATFTQLQGKELSFNNLADADAAWECVRQFERPACVIVKHANPCGVAEGVACGDAYELAYATDPTSAFGGIIAFNTKLDAATAKVILDRQFVEVLIAPDYEDGVLDYAKKKANVRVLRIPHGDGRNRHDVKRIGSGLLIQSSDLREVGRDELKVVSKLAPTDAQLADLLFAWRIAKFVKSNAIVYARDHRSIGIGAGQMSRVVSAKIAALKAEEAGLIVPGSVMASDAFFPFRDGIDAAAAAGIKAVIQPGGSMRDNEVIAAADEHGLAMVFTGVRHFRH
>NZ_CP013141.1|WP_057919164.1|2459245_2459893_-|CDP-alcohol-phosphatidyltransferase-family-protein
MASIYALKGRFQALLRPLVRRLHALGVSANQVTVAAAVVSLAVAAAVGWGAAARPWLFALLPLWMFLRMAMNAIDGMLAREFGQQSRLGAYLNELCDVVSDSALYLALFAVPGLAPAPLFVFVLLAALTEYAGVLGLMVGAPRRYDGPMGKSDRAFGIGLLGVLLAGGWIGAAITELALALMGLMCVWTVVRRVRAGLRHDAAQDSVGQRQGEQR
>NZ_CP013141.1|WP_057971482.1|2457488_2459249_-|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase
MREHQERHYASFDDAQLFYRHWPATEAAAGQPRRAVVLLHRGHEHSGRVAHLVGELNLNDCDFFAWDARGNGRSPGERGDAPGFEALVRDLDRFVAHIADVHGIAVDEIALVAQSVGAVVAATWVHDYAPRLRALVLASPAFKVKLYVPLARPGLKLMQKLRGNFFVNSYVQPQWLTHDPERIASYRTDPLIARPISVRVLLGLYQAADRIVADAQAITVPTQLLVSGADFVVHRGPQDRFYERLGSSIKERHLLPDFYHDTLGEKGRAAAVNRIRSFVQARFAEPLRRVDMLDAHRHGPSFEESEKLSWPPERWSLADLRWRFVRAGLRFGGKFSEGIKLGIDTGFDSGSSLDYVYRNEARGSGPLGRIIDRNYLEAIGWRGIRVRRTHLHELLRVAMWRLRAAGLPVDAVDIAAGHGRYALEALAGSSERADSIRLRDYSELNVDKGRALIDELGAGAIARFDQGDAFDRHALAALHPRPTLAVVSGLYELFPDNEQVRRSLDGLAAAVPVGGYLVYTGQPWHPQLEFIARALTSHRGGEAWVMRRRSQQEMDDLVAAAGFRKIDQRIDAWGIFTVSLAQRVEA
>NZ_CP013141.1|WP_057971481.1|2456145_2457492_-|phosphatase-PAP2/dual-specificity-phosphatase-family-protein
MTAAPARRPWGRALLWLLLLGPLFFLSYGYANSVAAARTDVPHIVFAWEHAIAFWAWTIVPYWSIDLFYGISLFVCRDRRELDNQALRLLTAQIIAVGCFLLLPLRYTFQRPDSDGVFGWLFDVLLGFDKPFNQAPSLHIVLLIVLWVRFAHHLGATWRWLLHLWFALIGVSVLTTFQHHFIDIPTGLLAGWLCVWLWPERVAAPWRSAALARDPQRWQLAAVYCAGAAVFAFAAWSFGGAAWWLLWPAWSLAMVASNYAVFGANGFQKRADGRLSLAARWLYAPYLLGAWINSRWWTRRAPQPVAVIDGVWLGRVPGAGQRGEFAALVDCSAELSLPVWREGDAVRPMLDLVAPTPGQLREAAQDIECLRQRGKTLVCCALGYSRSAAAVAAWLLLSGRADSIEEAIAILRKAQPAIVLGAAHRRALEATLGSVDAADAGLPGGQVA
>NZ_CP013141.1|WP_057971480.1|2455714_2456110_-|hypothetical-protein
MAALLAQGRQLRALSWLLLAAALLALVVPTASPPPWPLALSLVAGLLQCYYALRVDFDARLFQAASEDEDSVRAAQRLDASLLALGLLKPGRAGRDWPARWRGARGLMVRQAVSLSVQAAALVWAYGRAWA
>NZ_CP013141.1|WP_082638486.1|2454254_2455718_-|TIGR04222-domain-containing-membrane-protein
MNGIPLDDHEVWTPQRQALWQRLSDYRFGGEQPEAFVERVAHACQSTRETAQEAIEEYRRFCFLAVGAGHAVTPSEIVDRVWHTHMTDTRDYWLKFCPEALEQPLHHSPSLGGLAEDERHRRQYLDTVDSYRRYFGDPPSRFWAGDPLPARLTADESVWLPLTRVNSPWLFEPKGLGRWFWGWSGLSAAVFLLGGAENGTFDPLEWRGGWFLALYFAVIGWTYTAGNAVQRALRGRDGAGTELPADSIELGFLAGGAERAADVAVVELLTRDAIKLDYPGAPEKAASLRLPVWLRASAGAAGVPSRLLGLTKIVQRTQHLSEAMPALREHYGRLAEPMRAKGWWLSEGQRWRGRLAAALPMFAVVVFGVTKISIGEARGRPVGFLVVLTALAGLMVLVQLCTAQRRTRAGDRALQSATIKTRRSDDLAERVALAGTMALIGTPLADYHTLRTPVSGSSDSSSSSSGCGSGGDSGGGGGCGGCGGGGD
>NZ_CP013141.1|WP_082638484.1|2453518_2454241_-|CDP-alcohol-phosphatidyltransferase-family-protein
MTTRPDSDQPGTDLHGPDESAKPGAGGPAAGRRDDWRLALAARLRARGATPNGISLFAIGLSALAGLSFFFALRDPPHSGAVLLLFAALCLVGRLLCNRLDGLLARRGGMVGKAGEVYSDAPDRLADALVFLGVGYGLTPWMAWASDLGWAASLLAVGTAYVRVLGMACGLREHDEGPMPRRTRMIATAIAAVLAAIGLALGHAVIVAWVLLVALAAVIAGAAWTIALRLRAIVRELEAR
>NZ_CP013141.1|WP_057971478.1|2452868_2453522_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MISQWLASGFSGAIRLLTGARALWRCAPSSDHRVYYGNHVSHGDFVMIWSALPPALRREVRPVAGADYWQRDALRRYLIREVFNGVLIERDPAERKQDAIETLCEAVDDGCSLILFPEGTRNQSDEPLLPFKSGLYHLAHRRPELEFVPVWIDNLARVMPKGKLLPLPLLCTATFGDTLRLGPDEDKPQFLERARNALLALSDHAHAHDHGGQAGRS
>NZ_CP013141.1|WP_082638998.1|2464453_2466070_-|FAD-dependent-monooxygenase
MWLSKWAVREQGREGRSGEAATDIHDREACAHDGREPNAASGHAVVIAGSGPTGLMLAGELALAGIDVAIVERRATQELAGSRAGGLHARTLEVLDQRGIVDRFLVEGQVAQVTGFAGVMLDLGGFPTRHPYGLGLWQNHIERILADWVDGLGVTVYRGCEVSDLVQDEAGVEVALFDGTSLRAQYLVGCDGGRSRVRKAAGIDFPGWDATTSHLIAEVEMAQTPPLGIHRSGFGIHSFGRVDYEIRNGEVIYGDTGPVRVMLTEAQVGAVGEPTLEDLRAALIAVCGSDYGVHSPVWISRFTDATRQAAAYRERRVLLAGDAAHVHAPDGGQGLQLGMQDAVNLGWKLAQVVKGISQESLLDSYHAERHPVAARVLRTTMASIALRRGDERTTALRETVAELLGMDEPRRRFAAMLSGLDVRYGLGEGHPLLGRRMPDLDLFVAGGPMRVYALLHGARPVLLDFGASDAVDIGPWADRVRAIEARYDGVWELPALGAVTAPTAVLIRPDGYVAWVGDGSDAGLNEALNEWFGGANTA
>NZ_CP013141.1|WP_057919169.1|2466547_2466829_-|hypothetical-protein
MSADTKTPLDQVNAALNQLKEMRHYAKNYVEQLTAQWLLFDGELKKLKQAENIEELMTRQGELYDALEKEIAELEVVVVALQPAPEEAAGTTH
>NZ_CP013141.1|WP_144436440.1|2467036_2467396_+|hypothetical-protein
MGPFRDGWTKQDVEAAIARGLPEELLYVPIVIGMDPPDCGWAEAICLSLAGHPDFNVRGNAVLGLGHLARTCRRLDLVAAVPAIAAALRDDNAHVRGQADNAADDLLHYLGVRVPGHVS
>NZ_CP013141.1|WP_082638487.1|2467536_2468142_+|mechanosensitive-ion-channel-family-protein
MSPTIAQGAYAAMKLGEALAILVGAWLLTTLLRQLVRRVCVRYDIAPAFGLGLRRVLSTLIYISALLLFLNRLGISGSVVWTTLTGFVAVGAVAFFAAWSVLSNIFCAFLILTTRPFRLYDHIEVLENGDKPGLRGRVVDINFIYTTLQEVHGDGEDSVLQVPNSQFFQRTTRRWRQEPAWARAAREKTEHAADWQDAAGR
>NZ_CP013141.1|WP_057919171.1|2468336_2469392_-|alpha/beta-hydrolase
MIAAPTDRPHDPQRRSLLGGAALALLAAPLGAVGSAFAAPAGAVGPRRAATAAAWGPLKQIDAGVLRVSYAELGPRHGRPVLLLHGWPYDIHTYAEVAPRLAAQGYRVIVPYLRGYGATSFLSVDTPRNGQQAALAADAIALLDALGIESAIVGGCDWGARTAAILAALWPQRCQGLVSVSGYLIGSQQANQAPLPPKAELQWWYQFYFATERGERGYAQHRREFSRLIWGLASPQWRFDDATFERSAAAFDNPDHVAVVIHNYRWRLGLAQGEAQFDELEARLAQAPAIAVPTITLEGDANGAPHPPAAAYARKFTGPYAHRELQGGIGHNLPQEAPEAFAQAIVDVGAL
>NZ_CP013141.1|WP_057971486.1|2469851_2471750_+|MFS-transporter
MAHNQFALLTQRRFLPFFLTQALGAFNDNVYRQAIIGLLFYLGVSPEQRTLYTNLAPALFILPYFLFSATAGQIAERLEKHKLIRITTAMEIAIMSLAAVGFLTQNLPVLLIALFGTGLQSTLFGPVKYSILPSVLKPEELTGGNGLVEMGTSISILVGMIFGGLIFKLAGSHGPVVAASAIVALAITGNIVSRLIPRADAGEPGLKINWNPIPESVKVLRMTRRQPAVRNSVLGVSWFWFVGTVLTSQLPTYAVDNLGGAETLYIFALALFSVGTGVGSMLCERLSARTVEIGLVPLGAFGMSAFMVDLFFARSGAATVSGLEVAGFVSQPGAWRIMMDLVGIGVFAGFFVVPLFALIQNRTPKNELSRVIAGMNIQNAAFIVLAAVLGVVVQKFFHWTIPQIFLALAIANAVVAIYIFTIVPEFLMRFLSWVLVRTLYRLRVSGTERIPDEGAALVVCNHVSYMDALILSASIPRPVRFVMYYKIFNIPVMSWIFRTAKAIPIAGAKENPEVMRRAFEEIEAALDDGQLVGIFPEGALTKDGEIAKFKSGVEHILDKRPVPVIPMALRGMWSSMWSRRNARAEGGRLARMRVPRRFRAHVEVVADAPVQAETVSAESLEAQVRALRGERA
>NZ_CP013141.1|WP_057971487.1|2471885_2472224_+|CD225/dispanin-family-protein
MNQPSAGAPVSPYPNYLAWSITVTVLTFCLCCMVGSIPGIVAIVYGSQVNSKFASGDEAGARRASENAKIWTWVCTGLAVLGLIWMIVSFFINGASFLYGDALQEFQRMQTR
>NZ_CP013141.1|WP_057919173.1|2472252_2472672_+|DUF2752-domain-containing-protein
MKPGSRHLALAATAAASTAAAAAGVWVLRRFDPSAAGSPLPGCLFYQFTGLYCPGCGMTRALHALVHGDLAQMMAMNPLLPLLIIAVPLLALQGFGYRLPLPKAVVATLISAKFWIGLLLGFWLLRNLPWWPFAWLAPG
>NZ_CP013141.1|WP_057971488.1|2472691_2475532_-|TonB-dependent-receptor
MVKISYAFIVSVALTFAPEVGAHQAPKGDFTADGYRIQAGALDDALNAFAAQSRVQILYSPSLVANRRSSGLNAHVSARDALARLLQGTGLTAVAVNANTYLLQVVPRPRPVAAPRATVRRDTSGPGSPTQLDTVHVTGTRIPRSAFQTSTPLTIITREQIRSSGHQTLFDLLRLMPGMTGHHPRDVATAGGASQVPSAAAASSSLYSLGPRATLFLVDGRRIANYGLVSTDMGALSDLNGIPLSMIDRIEILHGGASAIYGADAMAGVVNIILKKDYSGGEVTANFGASERGDAEQQRLSVNLGLQTRGGGNVFLSADHFTRNPLVGSQRDWSTVNQEDTGLQDARIPFGYYFGNYYIPIKGCEDLDAGSEGQACSLDRARYVSLQPGITSNAFYGHYRQPVGSHSEIYADVRATRVALEMQNAPFFGLVNLPDDSPDAFAPMPILPLAYAFSEVGPVRNRTTTTTRDSTLGFRGYRGRWEWDLSLAQRRNKVLNRIDGLIDEPKLEEAVEAEKFSFTKKGNTEEVLEEIAPQNTLGGEVILDSVVANFDGPVFAMPGGDATVAVGAEARRERLRSRPGGAFMRGEVALAQKMEARNSHRYDSALYTEMNLPLHESLSIDAAWRVDHNGGHGSRVSPKAGFKWSPLQSLTLRGSVGEGYRAPTLFEMRRPMTFGDTAIVPWNPVTDPCLIQLSETSCQVDKHATVNSKLKPETSHSRTLGMIWSPTDAFSLSVNHYRIRRNNEILVINSLQRPELYPEALVRDSDGYLIGVNMYLDNVGSTDVRGWEFDADYRFETARLGKFALRLNGHYLDHLIRRSHPKVDALDYAGYTTPNRSALGSVQWSYRNWITTLNLRYMGPAKVDFGDPTKSCYKTWQVSGKCRTPSATVTDLNIAYGGFEHWLLSLNVSNLSDHTPVNYDESPGGYSIVDDDPVGRYYLVSATYRF
>NZ_CP013141.1|WP_057971489.1|2475628_2476615_-|FecR-domain-containing-protein
MDPNTALSGEGRAEAWVARLASPECTAQERAEFDRWLDESPQHVDEYVRAERTHQLAAALANDEMLQAAARIAWRATGREAARSRWWAPTALAASLLVATVVGVTWLRTAPAPVADERHATAIGEQRSLRLADGTRVLLDTDSAIVARFSERGREVVLDRGRVRFEVAADPARPFLVKAGRGEIRDIGTTFQVEKTDAVVSVGLIEGSVIVSGGVAQASSTLQPGQQLSYDDSGRLGAAEPLDIKAAQAWPAGNLVFKNRRLDALLLEMNRYSATKLRLAEPGLGAIPVSGVFHIGDQASLLEVLERGWSLKGEPNDDGDIVLRRKSG

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Crispr_ID: NZ_CP013141_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_9

3030130-3030243

Orphan

Consensus_repeat	Method
CCGCGGTCGCGGCTCGCGCCGCTCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013141_9

>merge|NZ_CP013141|9|3030130-3030243|CRISPRCasFinder
CCGCGGTCGCGGCTCGCGCCGCTCCTACCCTTCGCGAAAGTACGCGGCTTCGATGACCGACGACAGCGATGCAAGCTCTGCGCGTTCCGCGGTCGCGGCTCGCGCCGCTCCTAC

>NZ_CP013141|9|8|3030130-3030243|CRISPRCasFinder
CCGCGGTCGCGGCTCGCGCCGCTCCTAC	CCTTCGCGAAAGTACGCGGCTTCGATGACCGACGACAGCGATGCAAGCTCTGCGCGTT
CCGCGGTCGCGGCTCGCGCCGCTCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_051884433.1\|3019469_3019958_+\|DUF2721-domain-containing-protein	unknown	unknown	gnl\|CDD\|378544
NZ_CP013141.1\|WP_051884431.1\|3020019_3020505_+\|DUF2721-domain-containing-protein	unknown	unknown	gnl\|CDD\|378544
NZ_CP013141.1\|WP_057917782.1\|3027839_3028730_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP013141.1\|WP_057971759.1\|3035730_3036327_-\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
NZ_CP013141.1\|WP_031370694.1\|3026061_3027519_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP013141.1\|WP_057917783.1\|3024378_3025947_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP013141.1\|WP_057971753.1\|3021188_3021704_-\|DUF1993-domain-containing-protein	unknown	unknown	gnl\|CDD\|370447
NZ_CP013141.1\|WP_057971756.1\|3032351_3032720_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100004
NZ_CP013141.1\|WP_057920028.1\|3034476_3035688_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP013141.1\|WP_057917774.1\|3036377_3037778_-\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NZ_CP013141.1\|WP_082638604.1\|3021923_3022580_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013141.1\|WP_057971758.1\|3033261_3034398_-\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|236337
NZ_CP013141.1\|WP_057917781.1\|3028820_3029153_+\|DUF1244-domain-containing-protein	unknown	unknown	gnl\|CDD\|336522
NZ_CP013141.1\|WP_057971757.1\|3032723_3033272_-\|gamma-subclass-chorismate-mutase-AroQ	unknown	unknown	gnl\|CDD\|236441
NZ_CP013141.1\|WP_144436500.1\|3020587_3021085_-\|tRNA-adenosine(34)-deaminase-TadA	unknown	unknown	gnl\|CDD\|182786
NZ_CP013141.1\|WP_082638609.1\|3038094_3039330_-\|outer-membrane-protein-assembly-factor-BamB	unknown	unknown	gnl\|CDD\|274511
NZ_CP013141.1\|WP_057971755.1\|3030257_3031286_-\|DUF2272-domain-containing-protein	unknown	unknown	gnl\|CDD\|226772
NZ_CP013141.1\|WP_057917773.1\|3039329_3039959_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|225523
NZ_CP013141.1\|WP_082638608.1\|3031579_3032341_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP013141.1\|WP_144436501.1\|3022599_3022818_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_051884433.1\|3019469_3019958_+\|DUF2721-domain-containing-protein	gnl\|CDD\|378544	pfam11026, DUF2721, Protein of unknown function (DUF2721). This family is conserved in bacteria. The function is not known.	4.50744e-23
NZ_CP013141.1\|WP_051884431.1\|3020019_3020505_+\|DUF2721-domain-containing-protein	gnl\|CDD\|378544	pfam11026, DUF2721, Protein of unknown function (DUF2721). This family is conserved in bacteria. The function is not known.	2.06601e-20
NZ_CP013141.1\|WP_057917782.1\|3027839_3028730_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP013141.1\|WP_057971759.1\|3035730_3036327_-\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	1.94386e-39
NZ_CP013141.1\|WP_031370694.1\|3026061_3027519_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP013141.1\|WP_057917783.1\|3024378_3025947_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP013141.1\|WP_057971753.1\|3021188_3021704_-\|DUF1993-domain-containing-protein	gnl\|CDD\|370447	pfam09351, DUF1993, Domain of unknown function (DUF1993). This family of proteins are functionally uncharacterized.	8.62353e-83
NZ_CP013141.1\|WP_057971756.1\|3032351_3032720_+\|RidA-family-protein	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	8.04824e-27
NZ_CP013141.1\|WP_057920028.1\|3034476_3035688_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	8.87122e-152
NZ_CP013141.1\|WP_057917774.1\|3036377_3037778_-\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NZ_CP013141.1\|WP_082638604.1\|3021923_3022580_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.55364e-14
NZ_CP013141.1\|WP_057971758.1\|3033261_3034398_-\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|236337	PRK08762, PRK08762, molybdopterin-synthase adenylyltransferase MoeB.	0
NZ_CP013141.1\|WP_057917781.1\|3028820_3029153_+\|DUF1244-domain-containing-protein	gnl\|CDD\|336522	pfam06844, DUF1244, Protein of unknown function (DUF1244). This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.	1.06131e-45
NZ_CP013141.1\|WP_057971757.1\|3032723_3033272_-\|gamma-subclass-chorismate-mutase-AroQ	gnl\|CDD\|236441	PRK09269, PRK09269, chorismate mutase; Provisional.	9.84348e-40
NZ_CP013141.1\|WP_144436500.1\|3020587_3021085_-\|tRNA-adenosine(34)-deaminase-TadA	gnl\|CDD\|182786	PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional.	1.13874e-72
NZ_CP013141.1\|WP_082638609.1\|3038094_3039330_-\|outer-membrane-protein-assembly-factor-BamB	gnl\|CDD\|274511	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking].	4.14468e-139
NZ_CP013141.1\|WP_057971755.1\|3030257_3031286_-\|DUF2272-domain-containing-protein	gnl\|CDD\|226772	COG4322, COG4322, Uncharacterized protein conserved in bacteria [Function unknown].	3.87402e-35
NZ_CP013141.1\|WP_057917773.1\|3039329_3039959_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|225523	COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown].	1.98668e-34
NZ_CP013141.1\|WP_082638608.1\|3031579_3032341_+\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	1.42894e-08

>NZ_CP013141.1|WP_057917781.1|3028820_3029153_+|DUF1244-domain-containing-protein
MSHTPPPDHPPQDHETLAIEAAAFRRLIAHLMHERSDVQNIDLMILAGFCRNCLADWYREAADARGIAMSKDEAREAVYGMPFAQWKAQHQKDATPEQLAAFEAAQKQHG
>NZ_CP013141.1|WP_057917782.1|3027839_3028730_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MTSTPHSAHPARILDGKRIAEDLLDNLKAQVDARIAAGQSRPGLAVVLVGNDPASSVYVRNKRRAAQKVGIRAIDYDLPADTSDEQLLALIDRLNADPEVHGILVQLPLPDRRDATALIHRIDPRKDVDGFHPENVGHLVLRQFGLRPCTPRGITTLLGYTDRPVRGQSATIVGVSNHVGRPMALELMIAGCTVTSCHKFTPPEVLEASVRGADILVVAVGRPQLIPGEWVKPGAVVIDVGINRLDDGRLVGDVGFDAAAQRASWITPVPGGVGPMTVATLMQNTLEAAEAADKVG
>NZ_CP013141.1|WP_031370694.1|3026061_3027519_-|IMP-dehydrogenase
MLRIQAEALTYDDVSLVPAHSIVLPKDVNLSTRLTRDLSIRLPILSAAMDTVSEARLAIALAQLGGISIIHKNMSLEAQAAQVAQVKKFEAGVIREPFTVGPETTIGEVLKLTRARNISGVPVVDGGQLVGIVTSRDMRFETKLDDPVRHIMTKRDRLITVQEGASDDEVLQLLHRHRIEKILVVNDGFELRGLITVKDIQKKTDNPNAAKDSAERLLVGAAVGVGGDTEARVEALAAAGVDVVVVDTAHGHSQGVLDRVKWVKTRFPQLQVIGGNIVTGDAALALMDHGADAVKVGVGPGSICTTRVVAGVGVPQVTAVAMVAEALQDRIPLIADGGIRYSGDIGKALVAGASTVMVGGLFAGTEEAPGDIELFQGRSYKSYRGMGSLGAMEQGSKDRYFQDASDADKLVPEGIEGRVPYRGPLHGVVHQLAGGLRATMGYVGCATIEDMRKKPSFVRITNAGARESHVHDVQITKEPPNYRAG
>NZ_CP013141.1|WP_057917783.1|3024378_3025947_-|glutamine-hydrolyzing-GMP-synthase
MTDIHSDKILILDFGAQYTQLIARRIRELGVYCEIWAWDHDPAEIAAYGAKGIILSGGPESTTEHGSPRAPQQVFDAGLPILGICYGMQTMAKQLGGETEAADQREFGHAEVSLVAHCRLFDGLKDHPGSPPRLDVWMSHGDHVSKAPEGFVVTAKTDRIPVAAFADDARRWYGVQFHPEVTHTKQGQTLLRRFVVDICGCQTLWTAAHIIEDQIERVRALVGSDEVILGLSGGVDSSVVAALLHKAIGDQLTCVFVDTGLLRYNEGDQVMAMFAEHMGVKVVRVNAADRYFDKLAGVSDPEAKRKIIGNLFVDIFDEESNKLANAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRRLGVELGLPREMVYRHPFPGPGLGVRILGEVKREYAELLAKADHIFIDELRKAGLYDKTSQAFAVFLPVKSVGVVGDARAYEWVIALRAVETIDFMTAHWAHLPYDFLGTVSNRIINELRGVSRVVYDISGKPPATIEWE
>NZ_CP013141.1|WP_144436501.1|3022599_3022818_-|hypothetical-protein
MSRYLPVVAALLALPHLIAAASARTESDAVRSEHAIELERARCDALYRKHPVAAPAKTAKPIVVAPRSLGAH
>NZ_CP013141.1|WP_082638604.1|3021923_3022580_+|TetR/AcrR-family-transcriptional-regulator
MEIPVAKPEPLAEASDSCKQAPRPRGRPRVFDREQALETAMRLFWCRGYEATSLSELTAAMGIAAPSLYAAFGSKEQLFRAALARYIDGYRCNGGRVLTDESMSTRQAFEAFFEAIAQSFVESEQRSGCMLIAAEAGGLPAELREELARYRSALENQFLLRIERGMRVGDLPADTDAAALAKFLTALTQGLSIQARDGATTEQLAQVVRIAMRAWPSA
>NZ_CP013141.1|WP_057971753.1|3021188_3021704_-|DUF1993-domain-containing-protein
MTLSLYDISVPSLLRGLDTLSHLLDKGQAHAQEQGIEVEQLLGGRLAPDMYTLTRQVQAASDAAKFGAARLGGIAPPSFPDTETTLDELRARIVRTQEFVRSVPRESIDGQEQREIVIRPPNAPELKFVAADYIRFFVLPNFYFHLTTAYGILRHQGVALRKPDFLAAGSI
>NZ_CP013141.1|WP_144436500.1|3020587_3021085_-|tRNA-adenosine(34)-deaminase-TadA
MRRVSELADIDERWMRHALTLAERAEREDDEIPVGAVLVSADGAVLGEGWNRNIGSHDPSAHAEIVALREGGRRLANHRLIGTTLYVTLEPCAMCAMAMVHARVARVVFGASDPKTGAAGSVFDLLVDPRHNHRVEVRGGVLGEEAGARLTAYFRRKRGKPTGEA
>NZ_CP013141.1|WP_051884431.1|3020019_3020505_+|DUF2721-domain-containing-protein
MADPLLQLSSHYTVVSAMITPAFFLTATASLLVSSNNRLARVVDRMRQQLNQLEDTVDEQARDYLEARIILHRRRVRLILICLQLLYGAMTAFVATSLAIGIDQFTDYRLRGVPTGLAMCGVLLVLAASINMGREARMSVSMLDAEVKREFDRDNGRQKRR
>NZ_CP013141.1|WP_051884433.1|3019469_3019958_+|DUF2721-domain-containing-protein
MSQNAASFAHYAILTAMLAPAFFLTATASLLLSANNRLARVIDRARVLLKELAETEDAEERDQLERHILRQKKRSKIILRGSQLLYTAISFFVGTSLSVAGDAFLGYRLGAVPTILAALGVLAMFAASLLLARESSLAVEAVNEEMDHGHITAMKRWSKPRA
>NZ_CP013141.1|WP_057971755.1|3030257_3031286_-|DUF2272-domain-containing-protein
MFRSLVFACLWLSAGAAVAADACPALRGQTAAPDAATRIAAAACTENLQWFRPFIDVQGRLASATLSEAETSRLEDGATETWRRTVSYWRDTGLLQRMAGFAGATQCSDPYGGSYPAVACRAFLVDNPWSAAFVSYVMMKAAVPGFRPSASHYDYVRDAYRTPDQSPFQYLDPSTARPAAGDLLCAVRSGNRVYGYEGLVAALDGVNGALNMHCDIVVAVNPGNDGKAYLIGGNVQQGATMRIMAVNRNGEFWPLPRRSETQVECSPDTASACDMNKLDWAALLKLKPEASLAQLAPAIPLYVPQMAPPAPTPQGCCVQCVVGSGVPRCPNPNAPGVRPQQE
>NZ_CP013141.1|WP_082638608.1|3031579_3032341_+|alpha/beta-hydrolase
MLAGVAAAGYLSVCGWLYFKQRDLLYFPQNTRLGVSMTDYTVKHGSVVLRGWRLNAGQGKALIYFGGNAERIENMRESLAQWFPDRTIYLVSYRGFGASDGRPEESALFADALAVFDQVAREHPGQPVAIVGRSLGSGVASYVAGHRPVERLALVTPFDSLRETAQAHYRWLPTRWLVKDRYDSVTHLRNYFGPVLVVRATADDVIPAPNTQRLIHSLQTRPQGVDVVQLEGADHHNIGTYPAYGDSLREFMD
>NZ_CP013141.1|WP_057971756.1|3032351_3032720_+|RidA-family-protein
MRRRAIHPTAVSYAQAHEISDFKRMLFVSGQIPQSDDGALAGDFDGQCHQAWANVARQLAAAGMDYSHLVKVTTFLTDRRHRQRNYEIRHELLGEHAPALTVIITGLYEEGWLVEIEAIAAD
>NZ_CP013141.1|WP_057971757.1|3032723_3033272_-|gamma-subclass-chorismate-mutase-AroQ
MRIKLAAISLILATCPGAVAAKQPALPALTRLAELSAQRLLLADTVAASKRHSGKPVEDAARESEQLERLGAQAASHGLTEAQATAFFKAQMEANKLVQYRLLAEPAHRAAAAVDLGPVRERLDRLNVELLDALAPAMHEAQGEACVLRTDRVQRLAARRHRLDALHRTALVRAFGDLCRMP
>NZ_CP013141.1|WP_057971758.1|3033261_3034398_-|molybdopterin-synthase-adenylyltransferase-MoeB
MSIEQISPEQARRRQQAGAVLIDVREAHERAGGQAEHARGIAKDALESEPTAFLPDRDADIVLICQSGARSLRTAQTLVAAGYARVASVEGGTSRWIAERLPLAVLEQSDEERDFYDRYSRHLRLPEVGEAGQRKLQAARVAMVGAGGLGSPAAFYLAAAGIGTLVLADDDVVDRSNLQRQILHTEDRIGVSKVESARIALAALNPRVRVETFAERISADNVERLIEGADVVFDGADNFPVRYLLNDACVKLAKPLVYGAIHRFEGQVSVFDAGRHRGARPCYRCLFPEPPPPDAAPNCAEAGVLGVLPGVVGLIQATEVIKLILGLGDSLAGRLLHFDALGLRFRETRLAPDPDCPVCAAGREFPGYIDYQAFCSAH
>NZ_CP013141.1|WP_057920028.1|3034476_3035688_-|molybdopterin-molybdotransferase-MoeA
MNDFPSGLLFDEAMAIVAEVAAAHRLEAETVALSRCHGRVLAGDVDAPLSLPPFDNSAMDGFAFRHADLAGEQTVLRLIGEQFAGLDGGWSLAAGECVRITTGAPLPAGADTVAIKENVAVAGERVSVPRTALGQNVRYAGEDVRQGERVLQAGQLLTPARVSLAASLGLSSLRVRRKPTVAVFTSGDELVEPGMSLQPGQIYDSNRDLLMGLLRADGLEPTAWPRLPDDPKQVEIALRDAACAFDLVFTCGAVSAGEKDHIPAVLREFGRIHLWKVKMRPGMPLLFGSMDQARMLGLPGNPVSVMATYMTFGRALIDGLQGRSEARPRFRARLVGSIEKTHPRREFIRARLFSDDAGVLRVDPNPATGSHRLRAAADSDALMVVAEGPQTLADGAVMDVLPY
>NZ_CP013141.1|WP_057971759.1|3035730_3036327_-|molybdenum-cofactor-guanylyltransferase
MQCTRADLSLGILAGGRASRLGGLDKAWLRRDGEAQVLRLARAYREQVAQVWVSANRDLARYRQHGLQALSDTTPDLGPLGGLAALAEACTTPWLFTLPVDAVALDRPLLSALIEAQDGQGAYAVDDDGVQPLFALWPVTALRTALAQALAQRRLAVRELQAALGMAALRLDGLRFGNLNSPEDLLAHGFVADDAPGR
>NZ_CP013141.1|WP_057917774.1|3036377_3037778_-|ribosome-biogenesis-GTPase-Der
MLPLVALVGRPNVGKSTLFNALTRSRDALVHDEPGVTRDRHYGVCRPEGQRPFAVVDTGGIAGEDEGLAGATARQARAAAEEADLVLFLVDGREGASALDDEILAWLRKTARPTLLVVNKTDGLDARAAVNDFARYGIRDAVAVSSAHRQGIDELLAEVFARLPEEGTTSELDNDPSRVRVAFIGRPNVGKSTLVNRLLGEERMIASEVPGTTRDSVAVDMERDGRLYRLVDTAGVRRKSKVEEAVEKFSIIKTLQAIENCQVAVVMLDAGEGVTDQDASVLGYALDSGRALVVAVNKWDGQTEYQRQQTENLLMRKLAFVEWAEKVRISAKHGSGLRELFGAIHRAHASATTEIGTSEVTKAMEVAYETNPPPVVRGHVAKLRFAHPAGLNPPTFVVHGTRLRTLGDTYKRYLENFFRKRFKLVGTPIRFVFKDSSNPYEGKKNVLTERQVAKKKRLIRHVKRGK
>NZ_CP013141.1|WP_082638609.1|3038094_3039330_-|outer-membrane-protein-assembly-factor-BamB
MKSAENRFSGRPAVRNTAAIVLCAFALSGCTTIKGWFGGGKKDDGKPNEPTELTDITPSVKVDKIWSVNAGKGEERIGIRQGPAVADGRVYAAAVKGGVHAYDLQTGKQVWHFQPMRTDKDKKDKDIRLSGGPGAGDGLVVVGGLDGEVIALDAATGVQKWTAKVSNEVIAAPTIGLGMVFVRSNDGRVTAFDAASGERRWFWVHEVPMLTVRGNGSPTLGPGFVFVGNDDGTVSALSATDGRPTWDLPVAQPEGRSELDRMADVDGTPVLEGTTLYASSFKKQTIAIDAPSGRPMWVSEHGSVGRLGVASDRLVVSDPAGLVFGLDKSGGSALWQQPGLARRSLTGAAVQGDYAVVGDFDGYVHWLKLDNGEFAARARVGGKLLRAAPVVADGVLIVQNVEGELTAFKLQ
>NZ_CP013141.1|WP_057917773.1|3039329_3039959_-|tetratricopeptide-repeat-protein
MAIDDLLDEHEQSERVLAWLRANGAGLIGGIALGLAAIGGWKWWGNHQLETHGKAATEFQAAVDAVQAKDKAAAAKVKALPPGMYQTLASLDLAKSQVDADQRDAAIATLRGIKTEDAAIAEIVKQRLARLLIDAKQPAEAIKLLDKSTSPMAIEVRGDAQFALGKPELARADYGTALAKLDEASPRRRLLELKLTEAGGTPAKPEAKS

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Crispr_ID: NZ_CP013141_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_10

4119226-4119318

Orphan

Consensus_repeat	Method
CGCGGTCGCGGCTCGCGCCGCTCCT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP013141_10

>merge|NZ_CP013141|10|4119226-4119318|CRISPRCasFinder
CGCGGTCGCGGCTCGCGCCGCTCCTACCCTGACGGGTTGCGGCCCGTCTCAGCGCGAGATTGAGCGGTCGCGGTCGCGGCTTGCGCCGCTCCT

>NZ_CP013141|10|9|4119226-4119318|CRISPRCasFinder
CGCGGTCGCGGCTCGCGCCGCTCCT	ACCCTGACGGGTTGCGGCCCGTCTCAGCGCGAGATTGAGCGGT
CGCGGTCGCGGCTTGCGCCGCTCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057972275.1\|4115307_4116078_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057919475.1\|4128698_4129295_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013141.1\|WP_057919484.1\|4117322_4117802_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_144436578.1\|4122967_4124077_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NZ_CP013141.1\|WP_082639035.1\|4113455_4114808_+\|FliI/YscN-family-ATPase	unknown	unknown	gnl\|CDD\|224079
NZ_CP013141.1\|WP_057973236.1\|4125524_4125953_+\|YciI-family-protein	unknown	unknown	gnl\|CDD\|226318
NZ_CP013141.1\|WP_031373937.1\|4122708_4122933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057920255.1\|4126814_4128074_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|227277
NZ_CP013141.1\|WP_031373479.1\|4111971_4112619_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057919477.1\|4126121_4126535_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319899
NZ_CP013141.1\|WP_057919481.1\|4121270_4122398_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP013141.1\|WP_144436577.1\|4116190_4117030_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057972273.1\|4111210_4111975_+\|type-III-secretion-inner-membrane-ring-lipoprotein-SctJ	unknown	unknown	gnl\|CDD\|274190
NZ_CP013141.1\|WP_057919487.1\|4112653_4113391_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180763
NZ_CP013141.1\|WP_057972279.1\|4124467_4124854_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP013141.1\|WP_057972277.1\|4119455_4120757_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227524
NZ_CP013141.1\|WP_057972280.1\|4128304_4128688_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226728
NZ_CP013141.1\|WP_057919483.1\|4118002_4118344_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_051885287.1\|4110742_4111156_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_031373482.1\|4114804_4115296_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214351

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057919475.1\|4128698_4129295_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.45915e-09
NZ_CP013141.1\|WP_144436578.1\|4122967_4124077_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	1.06132e-53
NZ_CP013141.1\|WP_082639035.1\|4113455_4114808_+\|FliI/YscN-family-ATPase	gnl\|CDD\|224079	COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP013141.1\|WP_057973236.1\|4125524_4125953_+\|YciI-family-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	1.7395e-35
NZ_CP013141.1\|WP_057920255.1\|4126814_4128074_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	7.37277e-162
NZ_CP013141.1\|WP_057919477.1\|4126121_4126535_+\|VOC-family-protein	gnl\|CDD\|319899	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to bleomycin resistance proteins, glyoxalase I, and type I extradiol dioxygenases.	2.60273e-42
NZ_CP013141.1\|WP_057919481.1\|4121270_4122398_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	2.15484e-34
NZ_CP013141.1\|WP_057972273.1\|4111210_4111975_+\|type-III-secretion-inner-membrane-ring-lipoprotein-SctJ	gnl\|CDD\|274190	TIGR02544, YOP_proteins_translocation_lipoprotein, type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.5894e-60
NZ_CP013141.1\|WP_057919487.1\|4112653_4113391_+\|hypothetical-protein	gnl\|CDD\|180763	PRK06937, PRK06937, HrpE/YscL family type III secretion apparatus protein.	5.60203e-12
NZ_CP013141.1\|WP_057972279.1\|4124467_4124854_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.43767e-16
NZ_CP013141.1\|WP_057972277.1\|4119455_4120757_-\|hypothetical-protein	gnl\|CDD\|227524	COG5197, COG5197, Predicted membrane protein [Function unknown].	0.00684333
NZ_CP013141.1\|WP_057972280.1\|4128304_4128688_+\|hypothetical-protein	gnl\|CDD\|226728	COG4278, COG4278, Uncharacterized conserved protein [Function unknown].	0.00125255
NZ_CP013141.1\|WP_031373482.1\|4114804_4115296_+\|hypothetical-protein	gnl\|CDD\|214351	CHL00063, atpE, ATP synthase CF1 epsilon subunit.	0.00159035

>NZ_CP013141.1|WP_057919483.1|4118002_4118344_+|hypothetical-protein
MSDNIINSQYAQLSQQNMVDSAGVDESGNSKRGGRSGAGGGGWLVAFATAMGTLIEKAGNALMDKAEAIGDKPTAADSTELTVQSQMYSMFINAVSTALKTMGEAQGAMAKRN
>NZ_CP013141.1|WP_057919484.1|4117322_4117802_+|hypothetical-protein
MSQPFTPTQEQREQMFADFEALLNEQSGIDAADRDALLHHFARALDDAKPSDAADPQALMANLSQTLDLLQENRIIQPGEREGLTKAFEEPLKDPKVQRALEFSQRSQRDGEEKARQWLETQPDLEGEDTASGGGSTPAPPPSGLPSSLGIKKPVKTYR
>NZ_CP013141.1|WP_144436577.1|4116190_4117030_+|hypothetical-protein
MATTTTVTVGAAALALLLAASPGAARAQDTAPLIDGVGAYTHSQIMRHRGDEAATPTHKPGDKPAPNQRAGKRAPLGFDSLTFAPTPAVSKTLNAAFADSLTGRRPTLDHATLRGIDAEFVRNPRFRELLARQLGGDREQVLLALQSGRLQAQFQRRLAGHGYSTRNLGDVVNAFMIYGWTLVNDGARSDHGAAFAALRQRLGDSLARGEKMTTMDRADMQEAAELYGLVATLAAAAWQNAGSPAERASLRDGVNAIGRGIGIDFRRVALTERGFAPRR
>NZ_CP013141.1|WP_057972275.1|4115307_4116078_+|hypothetical-protein
MSITRSSSTSDSDSAQRSESTRQTDKPREARREPPAEGTVDRFRSLMQQREGKLGQLPGQEGLAREEEAAAMLKKQAQEGGPGNAKADARRAAHAGEAHARTVAEHSRQHGRLEERNAGSGQEQGRQEMASLPPAEASAMWQAQLAMRDAATQTQPSQPNSNAAAFADLIERHVRQLAVGEGAAGGEEGQVLLRLADSTLPGTDLLLTKTAEGWQLRADVRSRSSFDAIRDASPELMRRFASRNLGQLSIDPHFHD
>NZ_CP013141.1|WP_031373482.1|4114804_4115296_+|hypothetical-protein
MKRYPLHTLLQLRSHRVETARMLVLERQRQVQERRDACTQIQGEITALNDERAGQRLRLMDPPPPGMPWPMAMTQREAHIDHLGELAVAAQQRLLDAQGKLREAEASLDEARKAFFRAKARLDALEKRKDLWRKEQNTLTARREEAMNADLMLATRQNTNGPF
>NZ_CP013141.1|WP_082639035.1|4113455_4114808_+|FliI/YscN-family-ATPase
MSSLPRTILQAVPAPAQQDPLIAALSRVQPVVRVGKVAEAYGTMIRATGLKAMIGELCELRSPRDRNFHLAAEVVGVSRQYTLLTPLGALDGVAHDTEVIATGRQASVRAGDGLLGRILDANGEPIDGLGGFGPTVQIPIYAASPNPLSRQLIERPFATGVRAIDTVMTAGVGQRLGIFAVAGGGKSTLLGMLARGGDADVNVIALVGERGREVNEFVHDNLGEAGLKKSIIVVATSDRPALERSRAAWVATAISEYFRDRGKRVMLLVDSVTRFARALRDVGLAIGEPPARRGFPPSVFSALPRLFERAGNNDRGSITAFYTVLMEGEDGDDPIAEEVRSILDGHIVLSRKLAAAYHYPAIDVLTSLSRTMPRVADEAHQRAAGQLRKYLAKHQDIELLLQLGEYKRGSDAEADIAIEKIEPIRKLLKQSSHDLADYRQSVDALRKVFG
>NZ_CP013141.1|WP_057919487.1|4112653_4113391_+|hypothetical-protein
MHADPLQSASPSSAASAAATGMTDGGARRIEPNRPSATISVFERKQFERAVAGTVVPAKQWNAIAELDQTLARVNALYAEAGDEIKQAREAGYAAGFAEGLARAQQQMAQQLADLNERRARVLADAGSRVTELACAIVARISPEFDARSVVPPLVMHAVEAAQAEQFLLIRVHPSVREDVAKGLGLVRQAHPVVGVIELVDDESLDKLSCVVVSEAGEVRAGVAQQIEAIRIALSGAEYGAEHTE
>NZ_CP013141.1|WP_031373479.1|4111971_4112619_+|hypothetical-protein
MSASMALRTILTEVDPSWHGAGTDTIDPELLVSARQSPLGRRLLARWLAADAPALLAPQPGEGFGAAARRWPRVRMARLVRDLGALAYAPAIRSEVRREPVRRLKQALDNSYLLALDSLVWDGKVQAQLGAQLSAELDAALRASEADQLLFDLLDGRGRTELRVWAERRDPGLADWSRLLLPRTTHEASASLGTHLPPEAVERLYAHHGARPLAA
>NZ_CP013141.1|WP_057972273.1|4111210_4111975_+|type-III-secretion-inner-membrane-ring-lipoprotein-SctJ
MAALLACLLIVGCTRTTLYSQLDEQQANELMAALLDAGIPAEKDPSPSKTGWEVMVNRGDIPYAMQVLSSRGLPRAQYRSLGEVFKKEGFASSALEEKARYLYGLSQELSRTLSRIDGVVEARVHIALPDRDPLGGNVQDSSASVLVFERPGQSLRDRETDIKVFVKDSVEGLDDVNKVTVKFFTVTAPPKAHQAGGPFAAVLGSIDLTVVIIGAGVLVLLAIAAFFFGRLRSRFVPAAATAPASNTRSGVWNG
>NZ_CP013141.1|WP_051885287.1|4110742_4111156_+|hypothetical-protein
MIEAISVAAEAAQPAAASPAQSPQASAYDVREFAAAFDRGAAPTSQGSGTAQAGATASSEPSQGTRAVLAALDNLNGGADKIDAASKTMSANSADLTPGEMIQMTMRCHEFMFTSQLTSNVANRTSDGVQQLFRQQS
>NZ_CP013141.1|WP_057972277.1|4119455_4120757_-|hypothetical-protein
MSGFPNLPGLLGGGRPSFPGLGGGHGHGHDPLGLGLPGLGGDDHHGPGSPPGLNGDGPPGLEKPHGGGDTNTGGNGVDNNHGGDTSPVTPPSGTTPSSTEHDRPHNTPNVVSSGSAMDDQIAAYPSRLLPGQSMQSSGNTQTAFNQITQYPPPTLSERALGNSSGLQPALNRPVSADAVPGSAMTMQPSGVQTALLGNPSVAAANSAGLPAQVAYAAAPALAVPVATPNAVLAAPMTSALYSESLLAQQNLLNQLSMMQRLSTPPNVVPANVAAPASEALVAPTVVPLMVNAAPNDPRNLPLANDRLNLMRNDGPLNNAVYADSPYRRPLRRGAKVDSASLTYWLWALGRGGTHRTSHENEPSREVLRALQWLFWVLTVVAYACLAMAVIILLPGGEFVSERATPGVSGLALFLGVTVAAGAWWLGRRLNQRG
>NZ_CP013141.1|WP_057919481.1|4121270_4122398_+|acyltransferase
MSRLPGLDLLRAIAIVWVMFFHAAGAGLGSPYGPMSEFGWMGVDLFFALSGYLIGWQVLKPLSRGEPLRWGDFYLRRAMRVLPAFWVVIALYLLVPEFRERPGMQPAWQFLTFTVNLLIDYQHNKAFSHAWSLCVEEHFYLVFPLLAWGLTRRPALWKTLALGVLLVAGGMVLRAWVWQLSLPDGSTAWVERVYYPTWMRLDGLLAGVMLAAIRAYRPSWWAAMMQRSGLLLALGLAAVAAAIWLSQNRLGLQASVFGFPVVSFGLALLVAAAASEHRWTGRLRVPGAAWLAAASFSLYLTHKQMFGLVSRHYGDRLDGQGLLAFAAYAAAALLGGALLYYAVERPFLRLRDRIVQRREAQGEVGSGAVLPAAQS
>NZ_CP013141.1|WP_031373937.1|4122708_4122933_+|hypothetical-protein
MHRTRAELDGDLCQLRAALPMWRRQWRDDAVFWPRVDSLVERLLTVTPRPERGHVVSNINRMLASQGLQHAPYE
>NZ_CP013141.1|WP_144436578.1|4122967_4124077_-|glycosyltransferase-family-4-protein
MRIGLDYRAATAAPTTSAGRQVLALERALRGRSGIDTVLFTAAPADHPHRAIAVSDDAPLPLDHDPGLRDRWHYEAGFLPAALRREKIDIYIATADGGLPVWRKPADVRQVLLLHDLFRLTLRRPRTSPWRALATRLIDQTRIGHAIANADAIWTPSRYTTAECGRLYPAHAHKLYVLPDAVAPLPPPADRSKLPLALPPRYWLLVGTYEPRKNADLFLRAWLDARRQHYDTPDLAVVGSPADVGPELRRINGVHWFDEIDDEGLARLYVDAERLWQPSYAEGFGLPVLEALAAGTPVAVAEGSALEEVAPGDMPRFDPHDRPMLTQLMIRLGRESVDGNAEQRRAFAQRFAPNAYAARVAALLDELIG
>NZ_CP013141.1|WP_057972279.1|4124467_4124854_+|winged-helix-turn-helix-transcriptional-regulator
MSVDSLNATFAALADPTRRAILARLAHGEAGVTELAEPFAMSLPAISKHIKVLERAGLIARGREAQWRPCRLETERLQEVSGWLDRYRQIWEQRLDRLDDYLVQLQAAQAERDDPPQRGDKRDEHDPD
>NZ_CP013141.1|WP_057973236.1|4125524_4125953_+|YciI-family-protein
MKFMLIVKADRDSEAGVLPDPALLSAMGAYNEELVRAGVLLAAEGLHPSAKGVRVQFDGATRRIVEGPFASPEELVAGFWLIQARSLAEAVEWVKRVPHPQGMQAQIEIRQVYDLTDFGEALSPELRAAEERMRDQVATWSN
>NZ_CP013141.1|WP_057919477.1|4126121_4126535_+|VOC-family-protein
MQLTTYLSFDGDCRQAFEFYRKTLGGKITDMMPFRDHPGCEGLTEQDHDKIMHARYELDGFALMGTDATVMYPYKGVTGAHVVVSLNDPAEAKRIYDAFADGGKIEMPLQETFWALSYGIVSDRFGVPWMINCEKAA
>NZ_CP013141.1|WP_057920255.1|4126814_4128074_+|RNA-polymerase-sigma-factor
MTAIDTHRAIDAVWRIESAKLIAGLTRMVRDVGLAEELAQDALVVALERWPETGVPDNPGAWLMQTAKNRAIDRLRRKKLLDRKHEEIGREIEASQEEVEDAFFDKLDDDIGDDLLRLVFISCHPVLSTEARLALTLRLLGGLTTDEIARAFLAAEPTIAQRIVRAKRTLAEAQVPFEVPRGEELAQRLASVLEVIYLIFNEGYSATAGDDWMRPGLCEDALRLGRILAGLMPNESEVHGLVALMEIQASRAGARTAPDGTPILLLDQDRARWDRIQIQRGLSALERAIRLGGAQRPYALQAGIAACHASAPTAQDTPWPRIAALYQQLAVLTPSPVIELNRAVALSMAFGPAAGLQLVDALIDEPSLKHYHLLPTVRGDLLFKLGRREEARAEFERAAAMTRNVRERELLLARAAESV
>NZ_CP013141.1|WP_057972280.1|4128304_4128688_+|hypothetical-protein
MSNLAIGIAIVVALNVWATVVVVRNEEPHTQTLRRQLGLVWLLPVLGATLCLAIHASGQVIASRTRRAGAMRYGSSRGAANDSGFPQAVFFGSTAAQEAGDHGWGGHCGNDGGGDCGGGGGGGGGGD
>NZ_CP013141.1|WP_057919475.1|4128698_4129295_-|TetR/AcrR-family-transcriptional-regulator
MTDTPAKRLPKAERREQLLETAMGIVREQGTDALTLGYLAERAGVSKPIAYEHFGTRSGLLIALYKQIDDRQNAVVRRDFERTPHRLHDVARLLGESYMSCFRTAGPECHAINAALAGDEQMEKFQQELVEGYVNFYRDLLAPFATSLPADELLRRCVAIIGAGDALSREMTRGRIEEADAAATLARLIVGAMADAGV

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Crispr_ID: NZ_CP013141_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_11

4197751-4197858

Orphan

Consensus_repeat	Method
GTAGGAGCGGCGCGAGCCGCGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013141_11

>merge|NZ_CP013141|11|4197751-4197858|CRISPRCasFinder
GTAGGAGCGGCGCGAGCCGCGACCACGGAACGCACGGAGATTCCGCCGCCGTCGCTGCCGATCGAAGCCTGAAACCGTCGCTGGGTAGGAGCGGCGCGAGCCGCGACC

>NZ_CP013141|11|10|4197751-4197858|CRISPRCasFinder
GTAGGAGCGGCGCGAGCCGCGACC	ACGGAACGCACGGAGATTCCGCCGCCGTCGCTGCCGATCGAAGCCTGAAACCGTCGCTGG
GTAGGAGCGGCGCGAGCCGCGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_082639039.1\|4188136_4188472_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP013141.1\|WP_057918653.1\|4203268_4203820_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP013141.1\|WP_057972313.1\|4210328_4211189_+\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509
NZ_CP013141.1\|WP_057972306.1\|4193608_4195693_+\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|235469
NZ_CP013141.1\|WP_057972310.1\|4202087_4203272_+\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340842
NZ_CP013141.1\|WP_057918646.1\|4188764_4189046_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
NZ_CP013141.1\|WP_057972311.1\|4207978_4209421_-\|two-component-system-sensor-histidine-kinase-CreC	unknown	unknown	gnl\|CDD\|236846
NZ_CP013141.1\|WP_057972305.1\|4189409_4191047_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|227122
NZ_CP013141.1\|WP_057918648.1\|4192231_4193590_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|274368
NZ_CP013141.1\|WP_057918655.1\|4205422_4206031_-\|GNAT-family-N-acetyltransferase	unknown	unknown	unknown
NZ_CP013141.1\|WP_057918654.1\|4204538_4205426_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143598
NZ_CP013141.1\|WP_057972307.1\|4195708_4197238_+\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|223326
NZ_CP013141.1\|WP_144436586.1\|4200328_4201852_-\|glucan-biosynthesis-protein-G	unknown	unknown	gnl\|CDD\|377321
NZ_CP013141.1\|WP_057972309.1\|4198412_4200332_-\|glucans-biosynthesis-glucosyltransferase-MdoH	unknown	unknown	gnl\|CDD\|235476
NZ_CP013141.1\|WP_057972303.1\|4185148_4186498_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|224671
NZ_CP013141.1\|WP_057972304.1\|4186733_4187747_-\|isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|181606
NZ_CP013141.1\|WP_082639040.1\|4206387_4207857_-\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|236960
NZ_CP013141.1\|WP_031373561.1\|4191514_4192222_+\|phosphate-regulon-transcriptional-regulator-PhoB	unknown	unknown	gnl\|CDD\|131209
NZ_CP013141.1\|WP_082639038.1\|4183667_4184960_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381615
NZ_CP013141.1\|WP_057972312.1\|4209433_4210108_-\|two-component-system-response-regulator-CreB	unknown	unknown	gnl\|CDD\|236838

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_082639039.1\|4188136_4188472_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	4.54627e-19
NZ_CP013141.1\|WP_057918653.1\|4203268_4203820_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.71757e-16
NZ_CP013141.1\|WP_057972313.1\|4210328_4211189_+\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	4.41122e-113
NZ_CP013141.1\|WP_057972306.1\|4193608_4195693_+\|polyphosphate-kinase-1	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP013141.1\|WP_057972310.1\|4202087_4203272_+\|glycosyltransferase-family-1-protein	gnl\|CDD\|340842	cd03814, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases and includes a sequence annotated as alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase from Bacillus halodurans. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.	4.68991e-126
NZ_CP013141.1\|WP_057918646.1\|4188764_4189046_-\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	4.44786e-46
NZ_CP013141.1\|WP_057972311.1\|4207978_4209421_-\|two-component-system-sensor-histidine-kinase-CreC	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	0
NZ_CP013141.1\|WP_057972305.1\|4189409_4191047_+\|M48-family-metallopeptidase	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	2.7374e-121
NZ_CP013141.1\|WP_057918648.1\|4192231_4193590_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	3.37678e-160
NZ_CP013141.1\|WP_057918654.1\|4204538_4205426_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143598	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	1.28453e-110
NZ_CP013141.1\|WP_057972307.1\|4195708_4197238_+\|exopolyphosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	1.57878e-152
NZ_CP013141.1\|WP_144436586.1\|4200328_4201852_-\|glucan-biosynthesis-protein-G	gnl\|CDD\|377321	pfam04349, MdoG, Periplasmic glucan biosynthesis protein, MdoG. This family represents MdoG, a protein that is necessary for the synthesis of periplasmic glucans. The function of MdoG remains unknown. It has been suggested that it may catalyze the addition of branches to a linear glucan backbone.	0
NZ_CP013141.1\|WP_057972309.1\|4198412_4200332_-\|glucans-biosynthesis-glucosyltransferase-MdoH	gnl\|CDD\|235476	PRK05454, PRK05454, glucans biosynthesis glucosyltransferase MdoH.	0
NZ_CP013141.1\|WP_057972303.1\|4185148_4186498_-\|sodium:proton-antiporter	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	8.7435e-62
NZ_CP013141.1\|WP_057972304.1\|4186733_4187747_-\|isocitrate-dehydrogenase	gnl\|CDD\|181606	PRK08997, PRK08997, isocitrate dehydrogenase; Provisional.	0
NZ_CP013141.1\|WP_082639040.1\|4206387_4207857_-\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|236960	PRK11715, PRK11715, cell envelope integrity protein CreD.	0
NZ_CP013141.1\|WP_031373561.1\|4191514_4192222_+\|phosphate-regulon-transcriptional-regulator-PhoB	gnl\|CDD\|131209	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	2.45708e-136
NZ_CP013141.1\|WP_082639038.1\|4183667_4184960_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381615	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins. Lytic transglycosylases (LT) catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc). Membrane-bound lytic murein transglycosylase D protein (MltD) family members may have one or more small LysM domains, which may contribute to peptidoglycan binding. Unlike the similar "goose-type" lysozymes, LTs also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	2.46892e-43
NZ_CP013141.1\|WP_057972312.1\|4209433_4210108_-\|two-component-system-response-regulator-CreB	gnl\|CDD\|236838	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional.	3.10136e-121

>NZ_CP013141.1|WP_057972307.1|4195708_4197238_+|exopolyphosphatase
MNNIFPTTRLPLQDGDLLAAVDLGSNSFHMVVARYVLGQLRTVDRLRETVRLAEGLDRKGGLAPEVRQRALDCLSRFGQRIRDVPPQRVRALATNTVRRLAAPQAFLMPAESALGHAIEVVSGREEARLIYLGVAHAQPSKPGERRLVIDIGGGSTECIIGSGFEAIERESLQVGCVATTRRFFENGKLSKKKWRDALTEVSAEFQQFAGTYRSLGWHEALGASGTNKAIGEICAAMKLTKGAVIADALPHLRERLLQADRIDEIDLPGLSADRRPIIAGGILILEAAFNVLGLQRMAISKAAMREGVLYDMLGRGGADDPRDAAVKAMVNRYGIDEQQSARVEATLLRLFDQVAESWRLDADDRLMLQRAARLHELGLAIAHSQYHVHSSYVIENSDISGFSRQQQQFLAALVRTHRRGIPKSAFDALPDRLLSAVRRSSALLRLAVLLHRAHESDPIPQLDAHGDGNTLTLTVSRRWLESRPLIHADLEGEPQDMAGLGISLKLLGA
>NZ_CP013141.1|WP_057972306.1|4193608_4195693_+|polyphosphate-kinase-1
MNAMTDTPLDTDPLRDSALYFNRELSQLDFNFRVLAQAQDAQVPLLERLKYLCISCTNLDEFFEIRAGTMRHAQDLGLAPGPDGLAPATVLSRIHDRAAELVKSQYECWNDVLRPALSDAGVRVLGRNSWNARQTRWLRAYFRDEIMPVLSPLGLDPAHPFPKILNKSLNIVVVLKGKDAFGRAGNLAIVRAPRSLPRIIQLPENVSGGKHDFVFLSSVLSTFVDELFPGMEVKGAYQFRVTRNSELLVDEEEVDNIALALRDELIGRGYLRAVRLEIAEQCPKPIVRTLLENFDLPENAVYRINGPVNLNRVIQVYDLVQRPELKFPAYQQRVLPGVDSMFDTVADGDVLLHHPFDAFSPVLELIRQAAEDPHVLAIKQTLYRAGKDSPIVEQLVQAARNGKDVTVVVELRARFDEEANLGLADRLQEAGVQVVYGVVGYKTHAKMLLIVRREGRKLRRYVHLGTGNYHSGTARAYTDFGLITADPDIGNDVHLIFQQLSGLAPSLKLKCLLQSPFTLHAGVLKRIDRETKHARAGKPARIVAKMNALNEPQVIRALYQASQAGVQIELIVRGACTLRPGVEGISDNIRVRSIVGRFLEHHRVYWFANDGAPDLFCSSADWLERNLLRRVETGFPILDHDLRARVFDEALSNYLADNLNAWELQASGQYLRVVPEEGAMPHSAQATLLAKLCG
>NZ_CP013141.1|WP_057918648.1|4192231_4193590_+|phosphate-regulon-sensor-histidine-kinase-PhoR
MPPRARSAWFRTLGQLALILVGAAVLGVLIGYPWPVVTFAALGVVAWHYWRLRRVLIRLTARQRLTPPLGEGIWNELDRLLHRSQAEMRGRKRRLIEMLRAYRAAAAAMPDAIVVVERNSQRIQWFNEAATGLFGLRYPRDIGAPVVQRLQPLQLAHWLASGRNAEPLEAASPWNPAITLSLRLIPYSENLWLLVARDVSRLLQLEQMRRDFVANVSHELRTPLTVVHGYLDLLDPEEHPDWAPMLAEMQRQSQRMTQLVEDLLTLSRLESQDSLPAEEIVAMASMLSTLKREANALSQGRHEIAMDDLAGVDLFGSNKELHSAFSNLVSNAIRYTPAGGTIRIRFRPESAGIARGAVLEVVDSGYGIPAAHLPRITERFYRVSTSRSRESGGTGLGLSIVKHVLNLHQARLEIASEVGRGSTFACHFGIDRIRRRDAYQDAFADTLPDVLP
>NZ_CP013141.1|WP_031373561.1|4191514_4192222_+|phosphate-regulon-transcriptional-regulator-PhoB
MQKRILIVEDEPAIRDMVSFALRKGEYDPVHAGDAREAQAAIADRVPDLILLDWMLPGTSGLELARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVLRRSREDDEDGSVGVGPLRIDGAAHRVFAHGEGGDQPVQIGPTEYRLLHFFMTHPERVYSRTQLLDHVWGGSVYVEERTVDVHIRRLRKTLEPHHLDGMVQTVRGAGYRFSASLAA
>NZ_CP013141.1|WP_057972305.1|4189409_4191047_+|M48-family-metallopeptidase
MRRIALLTAAVTLALGSVCASAQDSKLPDIGSSAAELLTPAKQRQYGAMMLAQLRHYDYLLEDPLIDSWLDTLGTRLAANSDKPTQPFTFFMLRERQINAFATLGGYIGVNSGLVLTAEREDEVAAVISHEVAHVTQQHVLRGVERAQRDQLPILLAMLGAIVAAQSAGSNSTDDATMAAITSGLGLMQQRQINYTRSNESEADRIGIQTLSRSHYDPTAMADFFARMQVVSRSNAANWYGETPDYLMTHPVTTTRIGEAKERAEQIAGKNSLTAVTATPNATRVERIPKAPFTLPDNASGTDNPLLPSGLKLLDQSLTSGSTGVFEFARERLRVLSAVSPREAVREYERLGGDSDARRYGMALARMRSNQSGAAVPVLNELLQKHPGQVWLSLALAEAEAQTGKTAAADVRFEALLRQTPNNRAIALGYAKVLTDRNTPAGGQRAQAVLRPLFGQGGDDPLLQQLFARACEIAGDSIRAGEAYAEAAYLRGRPEQALVQLNTLKRNPDLDYYARARIEARIAAITPTVLELKRQGVRDEDLKRR
>NZ_CP013141.1|WP_057918646.1|4188764_4189046_-|glutaredoxin-3
MSDTAPQPPSIVIYTTAICPYCVAAKNFLKSKGQEWTEVRIDLDPAEREKMMALTKRTSVPQIFIGQTHVGGYDDMIALHRAGGLEPLLAGVS
>NZ_CP013141.1|WP_082639039.1|4188136_4188472_-|carboxymuconolactone-decarboxylase-family-protein
MNERILAEPNQVVRRFFALDTQTYQPGALDLKTKELLGLVASMVLRCDDCISYHVAQCKDAGVNRDEMFEAFSVGLVVGGSIVIPHLRRAVDFLDKLEQGEAAAPAGHDHG
>NZ_CP013141.1|WP_057972304.1|4186733_4187747_-|isocitrate-dehydrogenase
MTQTITVIRGDGIGPEIMDATLHVLDTMNLGLSYEFADAGLVALEKHGELLPAATMDSIRKNRIALKSPLTTPVGEGFSSINVELRKRFDLYANVRPAKSFPNTKSRFPSGVDLITVRENTEGAYIGEGQSLSEDGETAMLTQKITRRGSERIVRYAFDLARRTGRKKVTVVHKANILKSTSGLFLKTAREVAQQYPDIQCNEMIVDNTCMQLVMRPEQFDIIVTTNLFGDIISDLCAGLVGGLGLAPGANIGTDAAIFEAVHGSAPDIAGKGIANPCALLLGAAQMLDHLGQPEKATALREAIIATLEAKDSLTPDLGGEGNTMSFAKAIAGRIAA
>NZ_CP013141.1|WP_057972303.1|4185148_4186498_-|sodium:proton-antiporter
MNQPLRPGAPLSPSAWALTPLLVFLALFFGAGLYFTSHGDAMGFYQLHAPVAILPALALAAFIAWRRGIKPLDTLLSGMGDHNVVLMCLIFLLAGGFVEVSKAIGAVDAIVALGVGNVHPALLLPALFVVAGFISLSLGTSMGTIAAVAPIALGVSDASGLDRALVLGAVIGGATFGDNLSVISDTAIVASRTQGCTMREKFRENLKLALPAAIGTLVLLGFLGETAPVTTPDAVSPWLILPYLVVLGLAIAGVDVIIVLSIGLVIAGLFGVFLAEDFGFAAYTAHIWDGFESMVEITLLSLLVGGLGALMKAAGGLAWLAQVIGKFARGHRSRRAGEISIAALSATSDVFTANNTVAILISGGLARDVAQQHGVPPARAASVLDIFACVTQGVLPYGAQILLAASLSQVSPLALVGNVHYSWLLGGITLLTMLWPSRRRSGADATAAT
>NZ_CP013141.1|WP_082639038.1|4183667_4184960_+|lytic-transglycosylase-domain-containing-protein
MRRAPLRAALSAGLLFTGLSAALWLSAAGTARAAAAEAPAAKTTPVATAPQADPAAEPTRNGRDIYQRFREGLADPSCEPGASTRWRQHFAAAPKRLARSDDDLLPLFGYVVDALREAHLPTEYALIPFVESGYRPGARSAAGPAGLWQMIALTARNHRVPMREGYDGRLSPVDSTQAAVRYLKTLHGMFGGDWRLAVMAYNAGEYRILNALKRNGQTAANARPDQLAGLSDITQAYVRKLHALSCLMEQADDREEWLQALDRPVPRLQAVTLPSEVGDIDSWAARTGQDAAQLRRLNPVFANGAVGRSGARRAPLLAVAAGTANAPAPVASDLTIAGIETPPGTRTKAGETAADAVTTGSAEVAVAKNDEPAANASPRRHTVGRGDNAWTIAKRYRIRVADLLKRNGLGAKAVLKPGQALLIDAPNGAD
>NZ_CP013141.1|WP_057972309.1|4198412_4200332_-|glucans-biosynthesis-glucosyltransferase-MdoH
MNSTVAPPQRSLSVPFEALPPESPLAMPVQSLSSGERSGNALPSEPKGMALRRLYVIGGAALLTLVAAYHILRVLYVGGLNLLEGVLLLLFVALFAWIALAFTSSLAGFALILSRRRWRLGLKQGGELPALGERTALLVPTYNEDPERLMAGLQAIYESVAATGQLDRFDFFILSDTTKEPIRQAEIRAFHSLRERTGGQQRIFYRRRKNNAERKAGNIAEWVRRFGAAYPQMLILDADSLMTGEVIVKLSSAMERHPDVALIQTLPMIVNGQTLFARMQQFAGRVYGPVIAYGIAWWHGAESNYWGHNAIIRTRAFAEHAGLPELRGRKPFGGTVLSHDFVEAALMRRGGWALHMLPGLVGSYEEGPPSLTDMLVRDRRWCQGNLQHTAVLPAKGLHWISRMHLLMGIGHYFTAPMWAVMMLIGLAIPLDKAGFFNWESARLPGFSPSDYWRDQDPQRALWVFVATMAVLLTPKVMGFITMLLDGNTRRGCGGAIRAFFSMILETLLAALMAPITMYVQSRGVAEVLSGKDSGWESQRRDDGSLPLSGLIRSYGGLTLFGLLIGAMAYVVSPPLAAWMSPVIIGLVVSIPVVALTSARGPGLWLRRIGIFRIPEEITPPPVLVRAKQLRAEAAQRSAG
>NZ_CP013141.1|WP_144436586.1|4200328_4201852_-|glucan-biosynthesis-protein-G
MHRRELIKAGLSLPLAGLAGGGLPWAAMAAAGPGRAFDAATVPGLARALAAKPYRPADADLPEALARIKYDTYRDIRFDPKQALWKAEGLPFQLQFFHRAFLFKHRVDIHRVHGGLATPVVYRPQMFGFGSAPKPTQDDLGFAGFRVHAPINRGDYFDEVCAFLGVSYFRAVAKDLLYGLSARGLALNTGAGNSEEFPVFTGFWIEQPAAGAKQIIVHALMDSPSVSGAMRFAITPGTETVFDTQLRLYPRVALDRVGIAPLTSMYHFDATDRVGVDDFRPAVHDSDGLALHNGAGEQIWRPLRNPKTLQESAFQDRRPRAFGLMQRKRGFADYADSEAHYERRPSLWVEPVGDWGEGAVHLIEIPTGDEYHDNIVAFWRPRAPLAAGREHRYDYRLHWCAKHAWKPAQATVSRTRIGAGNGAARRIVIDLDGGRLGQLAADAKPRAVVWASAGRIANAIAHPNTGTGGWRMSFELEPGTARSVELRAVLEDGDGPLSETWLYRWTA
>NZ_CP013141.1|WP_057972310.1|4202087_4203272_+|glycosyltransferase-family-1-protein
MRYAIVTETYPPEINGVALTVQGLEQGLRARGHEVGLVRPRQHGEAQDGAAHELLVKGLPLPRYPGLRFGLPCAGRLTQAWSAHRPDAVYVATEGPLGWSALRAARRLRIPAATGFHTRFDEYMRDYGAPFLVGTALRWMRRFHNGADATLVPTRELVEFLRGQGFEDVVRLPRAVDTVLFDPCRRRAELRREWGLDESGLAAIYVGRIAAEKNLELAVRAFRSLQQMRPEARFVWVGDGPAREKLQRDNPDFIFCGLKRGETLAEHFASGDLFLFPSHSETFGNVTLEAMASGVPTVAFDYGAAHEHLRDGVHGAAIADGDDAGFVAAAVRIGSEDALRAGMSRAGREAISGLRPEQVAADFDALLHGLAERNPHNRTTRRINDESKPTQEVV
>NZ_CP013141.1|WP_057918653.1|4203268_4203820_+|phosphatase-PAP2-family-protein
MNRLPLRKRLIAGESGWCLRANRLGERSGSRAYFAAVSRLGDGVFWYALMAALILADGYDGLRASAHLAATGVIALALYKLLKRWTRRPRPFASDQRIHAWVAPLDEFSFPSGHTLHAVAFSLVAMAHYPMLAWLLIPFTASVAASRVVLGLHYPSDVLAATVIGSSLAGFSLWLVPGVSLFG
>NZ_CP013141.1|WP_057918654.1|4204538_4205426_-|carbon-nitrogen-hydrolase-family-protein
MRVAVAKYTIGAPRSFAEFADKQAQWLSEARASGAEVAVLPEYLALELGASFGAATQGDLHASLVAIQAYRRAWLDLFGLLARELRLHVIAGSFLLDLGQGRYRNRSDAFAPDGGRLWQDKLQLTGFEKQAGVIEAGDALKTFEIGMQRAGIAVCYDIEFPLPVRAQCEAGARLLLAPSCTDTEAGATRVRVGCLARALENRSFVAQAVTAGEALWSPALDTNTGEAAIYAPMDVGLPADGVLAQTRAGQRWAYADLDFAALEASRARAQVANDRDWTGQGAPAIARARVEGWER
>NZ_CP013141.1|WP_057918655.1|4205422_4206031_-|GNAT-family-N-acetyltransferase
MKTPMPEIHTYSGAEITPYLGAIAALRMQVFRDWPYLYDGDVAYEANYLRTYRESWRSIAVLAFDGGRIVGASTGLPMADETAELRVAFEGGPIDVEQVFYCGESVLLPEYRGRGIGHRFFDERQAHARGLDGFRWTAFCAVERNATDGRKPAFHRGNEEFWRKRGYVHRPELQVSLPWRELGRGECPHTLSFWLRPLERVQ
>NZ_CP013141.1|WP_082639040.1|4206387_4207857_-|cell-envelope-integrity-protein-CreD
MRVWLKMLMVLGMTLAILIPLLMIGGVIDERQTYRAQAVARIARSYAGAQAFSGPALVVPYEDSWVETEKDLDGTVKRVQRREQGRWTFFPNKLDVEGEIVPKVRKLGLHQVRVYEWKGKAKADFAATIPADPVLSADQVESGRRRVIGRPWLSYAFADVRGLRNPKLRLDGAETTIEDGLGARDGGGIHARLAVPAPGSSLRLQTDLDFALGGTESLALVPLGKNNRFALSSTWPHPNYGGSFPPHSDDIGDQGFRAEWQVSSVATNAQRQYLAGSILPTVVVAGDDEIGNEPGGDINAVQVTLKDPVNVYSQADRATKYGLLFVLLTFVGFFMFELMKQLRIHPIQYGLVGLALAIFFLLLVSLSEHFAFGLAYLAASVACIGLLVFYLSAVLRSLVRALGFGAMLTTLYGALYGLLISEDNALVLGAGLLFLILAVLMMVTRKVDWYQLGGSAPKRVPDPPKAEALRTPVAQAAGNPPDLPPHRGE
>NZ_CP013141.1|WP_057972311.1|4207978_4209421_-|two-component-system-sensor-histidine-kinase-CreC
MRIGLRIFLGYFLIVAVAALLLARVFVAEVKPGVRQAMEDTLVDTANVLAELATDDFVAGRINQGDFAKRVRALGQRDVGAAIWGFRKRAANYRVYITDARGIVVFDSSGQDVGQDYSRWNDVYLTLRGRYGARSSATDPGHPETTIMHVAAPIRADNGQVIGSLTVAKPNSAIAPFIARSQTVVTRWGFVLMGAALAIGLGVSWWLSRQIGLLRRYAHAVTAGDRATPPRAAGEFGELGRALETMRTRLEGKQYVEQYVHTLTHEMKSPLAAIRGSAELLESPPGDAPMPDADRARFAASIRGQAERLAQMIDKLLALAAVEHRQRLERPEPVALAAIVREALEQCSQRLDRSGAKLLLDLEPNLPPVRGDAFLLRQALINLIDNAADFSPRGGEIVLRLQREGEYQRVDISDRGPGIPDYALSRVFERFYSLPRPSGGSRSSGLGLCFVAEVASLHGGETELVNREEGGARASLIVRG
>NZ_CP013141.1|WP_057972312.1|4209433_4210108_-|two-component-system-response-regulator-CreB
MRILLVEDESAIADTVLYALRAEGFEAVHCLTGGEALREAARVAFDLAVLDIGLPDIGGFALCRELRRGRDLPVIFLTAQNAEADRILGLEIGADDYVTKPFSPRELATRVRVVLRRARAGAAETAAVEDGFVHDLEGKRIRYRGQALDLTRYEYGLLAALLQRPGAVLSRAQLMDRVWGDALDSGDRTVDTHIKTLRAKLRDVAADRDPIRTHRGLGYSLEAS
>NZ_CP013141.1|WP_057972313.1|4210328_4211189_+|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MNYRHAFHAGNHADVLKHVALLALCDALTVKPAPLFALDTHAGRGLYPLDGNSALRTGEAEGGIGRLLAEAPKQAAISRYLAAVRACRNEHGPSAYPGSPWLLAHALREDDRIAACELQPEEASQLEHHFKADPRVAVHARDGYAAMKAMLPPKIGATRYNRGLVLIDPPYEAQLEEFDTALGALRDALARWPQGCYVLWYPIKRRRALQPFYRRAATLPAKSILTAELLVRADDSPLRMNGSGLLLLNPPWQFDQTLGAALPVLARTLAETADASAAVSWLKQAD

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Crispr_ID: NZ_CP013141_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_12

4311661-4311753

Orphan

Consensus_repeat	Method
GTAGGAGCGGCGCAAGCCGCGACCG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP013141_12

>merge|NZ_CP013141|12|4311661-4311753|CRISPRCasFinder
GTAGGAGCGGCGCAAGCCGCGACCGCGCTGCCTCAGTCTCGCGCCGCATCCGGCCGTAACCACCCCCTGTAGGAGCGGCGTAAGCCGCGACCG

>NZ_CP013141|12|11|4311661-4311753|CRISPRCasFinder
GTAGGAGCGGCGCAAGCCGCGACCG	CGCTGCCTCAGTCTCGCGCCGCATCCGGCCGTAACCACCCCCT
GTAGGAGCGGCGTAAGCCGCGACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_036149715.1\|4323135_4323900_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP013141.1\|WP_057972359.1\|4314969_4315923_-\|dimethyl-sulfoxide-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|113736
NZ_CP013141.1\|WP_057972355.1\|4300527_4301415_-\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NZ_CP013141.1\|WP_057972358.1\|4309776_4310832_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP013141.1\|WP_057919887.1\|4312260_4313196_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP013141.1\|WP_057916671.1\|4320532_4321501_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP013141.1\|WP_057972363.1\|4322764_4323001_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_036148912.1\|4310849_4311587_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP013141.1\|WP_057972361.1\|4316772_4316994_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057916672.1\|4321500_4322427_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132866
NZ_CP013141.1\|WP_057916662.1\|4304771_4305770_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273386
NZ_CP013141.1\|WP_057973251.1\|4301509_4304731_-\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	unknown	unknown	gnl\|CDD\|129992
NZ_CP013141.1\|WP_057972362.1\|4317048_4319958_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239164
NZ_CP013141.1\|WP_057919886.1\|4309067_4309763_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|334855
NZ_CP013141.1\|WP_144436592.1\|4307253_4307628_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057916666.1\|4314011_4314686_-\|DUF481-domain-containing-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_144436590.1\|4299817_4300387_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057972360.1\|4315954_4316776_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319873
NZ_CP013141.1\|WP_057972357.1\|4307982_4308945_+\|TonB-family-protein	unknown	unknown	gnl\|CDD\|367555
NZ_CP013141.1\|WP_082638780.1\|4305766_4307128_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057972359.1\|4314969_4315923_-\|dimethyl-sulfoxide-reductase-anchor-subunit	gnl\|CDD\|113736	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC). The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).	2.32212e-39
NZ_CP013141.1\|WP_057972355.1\|4300527_4301415_-\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	3.69071e-112
NZ_CP013141.1\|WP_057972358.1\|4309776_4310832_+\|histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	1.66358e-44
NZ_CP013141.1\|WP_057919887.1\|4312260_4313196_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	3.80564e-166
NZ_CP013141.1\|WP_057916671.1\|4320532_4321501_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	5.95004e-55
NZ_CP013141.1\|WP_036148912.1\|4310849_4311587_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45965e-62
NZ_CP013141.1\|WP_057916672.1\|4321500_4322427_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132866	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.	1.36303e-59
NZ_CP013141.1\|WP_057916662.1\|4304771_4305770_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273386	TIGR00999, Nickel-cobalt-cadmium_resistance_protein_NccB, Membrane Fusion Protein cluster 2 (function with RND porters). [Transport and binding proteins, Other].	1.56454e-30
NZ_CP013141.1\|WP_057972357.1\|4307982_4308945_+\|TonB-family-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	1.19048e-13
NZ_CP013141.1\|WP_057972362.1\|4317048_4319958_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239164	cd02763, MopB_2, The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP013141.1\|WP_057919886.1\|4309067_4309763_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|334855	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This family consists of both phospholipases and carboxylesterases with broad substrate specificity, and is structurally related to alpha/beta hydrolases pfam00561.	1.59743e-49
NZ_CP013141.1\|WP_057972360.1\|4315954_4316776_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319873	cd10551, PsrB, polysulfide reductase beta (PsrB) subunit. This family includes the beta subunit of bacterial polysulfide reductase (PsrABC), an integral membrane-bound enzyme responsible for quinone-coupled reduction of polysulfides, a process important in extreme environments such as deep-sea vents and hot springs. Polysulfide reductase contains three subunits: a catalytic subunit PsrA, an electron transfer PsrB subunit and the hydrophobic transmembrane PsrC subunit. PsrB belongs to the DMSO reductase superfamily that contains [4Fe-4S] clusters which transfer the electrons from the A subunit to the hydrophobic integral membrane C subunit via the B subunit. In Shewanella oneidensis, which has highly diverse anaerobic respiratory pathways, PsrABC is responsible for H2S generation as well as its regulation via respiration of sulfur species. PsrB transfers electrons from PsrC (serving as quinol oxidase) to the catalytic subunit PsrA for reduction of corresponding electron acceptors. It has been shown that T. thermophilus polysulfide reductase could be a key energy-conserving enzyme of the respiratory chain, using polysulfide as the terminal electron acceptor and pumping protons across the membrane.	2.62857e-74
NZ_CP013141.1\|WP_036149715.1\|4323135_4323900_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	4.66806e-46
NZ_CP013141.1\|WP_057973251.1\|4301509_4304731_-\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	gnl\|CDD\|129992	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family. This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP013141.1\|WP_082638780.1\|4305766_4307128_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	5.70857e-18

>NZ_CP013141.1|WP_036148912.1|4310849_4311587_+|response-regulator-transcription-factor
MRVVIADDEPLARERLRSLLAERDDVEVVAEAADGQHALHACAEHRPDLVLLDIAMPGIDGLEAARHLAAFEPRPAVVFCTAYDAHALSAFEAEAIDYLVKPVRAERLDAALERVRTFAAGRERHVGGTETAPGQSRSHLCARLRGSLRLIPIEDVHYLHAEEKYVIVHHARGEDLIEESLKSLEDEFGERFVRIHRNCLVARHEIVELKRDSEGHVQAVLRHGKQPLEVSRRCVAALRETLKHL
>NZ_CP013141.1|WP_057972358.1|4309776_4310832_+|histidine-kinase
MLESAGEHEPWLPDLCRLPRLVVMLSMAELIVIVLALAPDGTRWDLSRFVSSSAFALWLALAISVLLCVSRRQLSRLPPGVGGFIATATAAAIAAAVAAITHIIDSVTGIGLVPPGISFQRFVGGTAAVAILAVGVVLRYLYVNDSWKAQVRANARAEVDALQARIKPHFLFNSMNTIAGLVRSDPVVAERAVLDLSDLFRAALGASKSDSSLAEEVELAERYLAIELLRLGERLRVVWRKREPLPWRMPLPRLVLQPLVENAVLHGISRLPGGGEIEIELTELSDELLLRIRNPAPPPADGRSGARHAHSSIGQRLRYAYGPTVRMTAGWNEGYYLCELHVPTGVEAHSR
>NZ_CP013141.1|WP_057919886.1|4309067_4309763_+|dienelactone-hydrolase-family-protein
METSAPPALLETVERETGPAPSWSVLWLHGLGADGHDFAPIVPELLRRDWPALRFVFPHAPVRAVTINNGARMRAWYDIRDISDLAQRADEAGVDESVQQVDALIEREIERGVPASRILLAGFSQGGAITLATALRRKQALGGLIALSSYLPMPERLVAEATSVAPSQPAFMAHGQHDPMVPYAGGERAAARLRGLGFQVDWHAYPMAHQVCAEEIDALGDWMSQRFAATA
>NZ_CP013141.1|WP_057972357.1|4307982_4308945_+|TonB-family-protein
MRAIAGLALGVALGGCGSEAPHSAASPAPLADAALELPAPLDELDIEGLRARATQALREQRIHTPAGDSAVDYYLALRDKEPGQIDVIGALDELQPYVVIAGEQALLDDDLAESHRLLDLLARMDPQAPALPRMRESLRVAEASRERKTREETERLMAERTDAATVLSARREAARTANAALANAAMKADAAASALAADAAAAKTGSASAAQPVAASAATPAAALPAMTSANAASPAMPRLLADASPRYPLPALNRKIEGSVEVSFTILPDGRVGAPRLVSSEPAGVFDAAALAAVARLRFEASGQSHTARRTLNFRLPSR
>NZ_CP013141.1|WP_144436592.1|4307253_4307628_-|hypothetical-protein
MPGPSAIAIAFRYLVFGVLIAVMLVKPTLTFATEIGELAGPVAALAHEHAGASAGDSAAPDSADPDGCGDARWHLSHCCALQAALLPRFEVGLLAPSAAGPVPAVSTAFVPTPTAVPFRPPISA
>NZ_CP013141.1|WP_082638780.1|4305766_4307128_-|TolC-family-protein
MRLRPAALAVLTAALCFSAQARPSLAAASGPATSGPATSGPSASTPAGTARAASVFTLDDAFARIGDAHPDLRLFGSQRSVLEAERDLAAQRPAWVAGAAVDNVFGSGAVSGVKGAELTLSLASVFERGGKLDARRAFAQSRIDALAVDRESRRLDLLAETARRYLGIVAAQRRIELAQFDIGQRKRTVAAARQRLVAGASPESGLLTAQAALARAELDRARSEQSLLAARQHLAALWGERDPGFAGVAGDPYALPKIEEATALAALLDRSPELTRFVDARRIGEARVRLAQSQASADIDWQIGVRRLQDGGDTALIGSVSMPLGARSRAEPGIRGAQAELTVLETEREAKGLLLYSTLVEAHGRYRVGALEVARLKDEVLPRMSRAENAAEYAYRAGAISYLELALLQADSVAVRKQRLDTALDAQLALIEIQRLTGESFLAPSSAPAGATP
>NZ_CP013141.1|WP_057916662.1|4304771_4305770_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKPELLIAAGLLALTLSACGGSAEAPAAKAEGTHADEASDEHRHGEGEAGHGEKGEAEEEAESTAIPAAIAQRSGIVVAAAGPGTIADEHEVQGLVTPLEGRIANITARYPGPVRSLRANVGDRVKAGQTLATVDSNLSLTTYAIASPITGVVLARNASVGEVAVEGTTLFEVADLSTLWVDLHVFGADASHLRPGVPVTVMRMGEEQGVETTLDRILPGTATASQSTVARASIANADGLWRPGSAVRARVTVEQQPVSLAVPLTALQRMDERDVVFVREGERYIARPVRIGRRDARRMEVLSGLRAGEQVVVEQSFLIKADIEKSGASHEH
>NZ_CP013141.1|WP_057973251.1|4301509_4304731_-|CusA/CzcA-family-heavy-metal-efflux-RND-transporter
MLERILRFAIGHRWLMLALTGALIAIGVWSFRQLPIDATPDITNVQVQINTQAPGYSPLESEQRVTFPIETALAGLPKLDYTRSLSRYGLSQVTVVFKDGTDLYFARQQVAERLQQVKSQIPAGLEPELGPTATGLGEIFMYTVDAEPKARKADGTPYNATDLRTLQDWVIRPQLRNTPGVTEVNTIGGYARQIHITPDPARLVALNLTQRDVVAALAANNQNVGAGYIERNGEQFLVRVPGQIVGIEAIGDIVLDRRDGVPIRVRDVAKVGEGPELRSGAATQNGHEVVLGTVFMLVGSNSRDVSQAAAAKLQQANASLPKGVSANAVYDRTSLVDRTIATVSKNLVEGALLVVVVLFLLLGNFRAALITALVIPLAMLFTITGMVRGGVSGNLMSLGALDFGLIVDGAVIIIENCLRRFGEAQHALGREMSDEERHDLTATATAEVIRPSLFGLGIIAAVYLPIFALSGIEGKMFHPMAITVVLALTGAMLLSLTFVPAAVAIFLGGKVAEKENRAMAWLRRRYEPVLAWALRSRMTVLAGTAVLVILSGAVAMRMGSEFVPSLDEGDVAVQAMRIPGTSLTQSVTMQKTMEQAFLAMPEVERVFSKIGTAEVANDPMPPSVADTFLMLKPRERWPDPGKTKAALMEDIEAVARTLPGNNFEFTQPIQMRMNELISGVRADVAIKVYGDDLQQLLKIAQQIETVAKQVPGAADVKAEQVTGLPMLSVEPDRRSLAVYGLNPAAVQDTVATAVGGEVAGQLFEGDRRFDLVVRLPERLRQDTAALADLPVPLPARSEGDRDESSRDATWSSGAPRTVPLREVAKLNSILGPNQINRENGKRRIVVTANVRDRDLGGFVTELRQKLDAQVKVPEGYWIGYGGTFEQLISASQRLAVVVPVTLVLIFTLLFMAFGSAKDAAIVFSGVPLALTGGVIALALRGIPLSISAGVGFIALSGVAVLNGLVMIAFIRKLREQGDPLDNAIVDGALGRLRPVLMTALVASLGFIPMAFNVGAGSEVQRPLATVVIGGIVSSTLLTLLVLPVLYRWLHRNDAGERKFDPPALATAEPSPAH
>NZ_CP013141.1|WP_057972355.1|4300527_4301415_-|cation-transporter
MGSGHDHGSTAIRHERPLWWALGLTGGFLIAEVVGAFLTNSLALLSDAAHMGTDTLALMIALTAVRLSRKPADAKRSYGYARMEAMGAMANGLMLFAVAAYILWEAAGRFSEPPQIATAGMLAIAALGLVVNLVAMRLLKAGSGESLNMKGAYLEVWSDMLGSVAVIAGAIVIRFTGWTVVDPILAVLIGLWVLPRTWTLLREAGNVLMEGVPGGIDLTAVRTMLMAAPGVGEVHDLHVWSLGSSTPAMSAHLVVDAGVDADALRGELVRQLDERYGIEHCTLQIESAACDNPSH
>NZ_CP013141.1|WP_144436590.1|4299817_4300387_+|hypothetical-protein
MRALIIAMAALAATACGPKVTPEQREQGIAAFATVQQVFQHPRCQNCHIPGDQPLQFDAGLPHAMGVVRGPEGKGAAGLPCSTCHGEANLPASYGPNAPPGAPHWQLPPPDHKMAWIGLPSPKLCEMIKDKKSNGGRDFAALIKHVSEDKLVLWGWAPGGERKPVSVPHPEFVAKFKTWADAGGPCPAS
>NZ_CP013141.1|WP_057919887.1|4312260_4313196_+|hydroxymethylbilane-synthase
MKTLRIATRKSPLALWQSEHVADRLRAAHPGLEVSLVPMSTRGDEVLDRSLAAIGGKGLFLKELELAMLRGEADCAVHSLKDVPMELEPGFALPAILERADYADAFVSNHHDGIDSLPLGARVGTSSLRRQAQLRALRPDLQLLDLRGNVNTRLARLDAGDYDAIVLACAGLQRLGFDARIRARLESPYWLPAPAQGAIAIECREDDVAARSFCAALDHAATRTCVEAERAMNRALHGSCHVPVAAYARLDGEHLRLDGQVGSASDGRAVRAHGEGRGDAPDCLGIEVAQRLLEQGAGEFIADSLVDIDAD
>NZ_CP013141.1|WP_057916666.1|4314011_4314686_-|DUF481-domain-containing-protein
MLGAIGLALLGAPLVTLPTPAFGGDPTLIAIASDPAQMRLYCFSTRCGDEEWRLATSGRAKGPEIDPLDLPPLRTVLLPGSQRHVGGVRAPATSRTSRAMYSNDYRIGTRYGVQALRDGPTQVGLSFGAGYRLAPLHDDGINRPGTVFRGEVSIGQRLGERARWSQRVQFESGHGDTFVKQSMRLDVDLWPYWKLETDFAIRHDSNGGGGSESAESSIELIRRF
>NZ_CP013141.1|WP_057972359.1|4314969_4315923_-|dimethyl-sulfoxide-reductase-anchor-subunit
MHPAFSVIFFTTLSGAGYGLMAWLSAVVLMQLGSGAEAGAMPPRTVAVALALALTLVSVGLLSSTLHLGKPMRAWRAFSQWRSSWLSREGVMAVATYVPALALSAWAFAPSAHAAVGAVWPVIAAIALLVGAVLTVVCTAMIYASLKPIPAWRHRLVVPAYLAFALLAGAALLAALPGASGLARLATFALIPLAFVTAAIKLGYWRDIDRTPLTVTRGDAVGLPQRELDVFERPHTEDNYLTREMGYVLARKHARKLRRIALAMFAAVPVVLSLVALALPTVAAIAMPLATLSLLLGTLVERWLFFAEARHLVTLYY
>NZ_CP013141.1|WP_057972360.1|4315954_4316776_-|4Fe-4S-dicluster-domain-containing-protein
MTDLPLPSKKKLGLVIDLDTCVGCHACAVSCKEWNAGGFAAPLTDEQPYGKDPSGIWFNRVHSYEVAASETAPASARAEAMPLADPVRGCGEVAAPQPAMTLHFPRSCLHCEQPACVTVCPTGASYKRAEDGIVLVDEDKCIGCKLCSWACPYGAREYSPVEGVMKKCTLCIDRIYNENLDESERQPACVQACPTRARHFGDLGDPESKVSKLVAERGGVDLMAQLGYQPTNKYLPPRPRRAGPADDATPRKEALDTQQLPSALRWLDRVLSR
>NZ_CP013141.1|WP_057972361.1|4316772_4316994_-|hypothetical-protein
MRTARLFAGWLCIALGFGLIILLGLGVLDPTRDTAAHATSAAPVLIALMPSVAIGLTVFALGLWLLATGKKKP
>NZ_CP013141.1|WP_057972362.1|4317048_4319958_-|molybdopterin-dependent-oxidoreductase
MRKHAPQEPAIDLSPSPGDEVKTTTCYMCACRCGIKVWLSDGRIRYIQGNPDHPVNQGVLCAKGSAGIMQHYSPARLDKPLLRVGERGKGEFREIEWDEALRIAADWLAPIRERNPDELAFFTGRDQSQALTGWWAQQFGTVNYAAHGGFCSVNMAAGGLYTLGGSFWEFGEPDWEHSRYLMLWGVAEDHDSNPIKLGLGRLKASGAKIVAVNPVRSGYGAIADEWIGIRPGTDGLFAFALIHELLKADRIDLDYLVRYTNAHWLVIRNPSGADDGLFARDGEGRALCWARGLPDGASEGRAHPADAIDIAPAVVGEYSLADGRRAMPVFHLVAERYLDPQYAPDAVSERCGIPAETIRRIARELAEAAFDHAITLPIAWTDAYGRQHTEMTGRPVSMHAMRGISAHSNGFHTCRALHLLQLLLGAVDTPGSFRYQPPFPKPIPPPNRPGKTRQPNGALDAAPLGFVHSPEDLVVDANGQPRRIDHAFSWAYPLSAHGMMHTVIRNAWAGDPYKIDTLMMFMANMSWNSAMNTGETIGWLTDRGEDGEYRIPRIIYADAYASEMTAYADLVLPDTTYLERFDAISLLDRPISDADSASDAIRHPVVDAAQQREGRDVRGFQSVLLELGARLGLPGMVHDDGSPRYRDYADYIVRHERAPGVGLLAGWRGEHGELEAKGPPNPQQLQRYIDNGGFWRSHVPESARYYKMANRGYLDWAQKMGFIGHADPIVLQLYSETIQKFRLAAQGHGAQQPPPQHRERVATYFDPLPIWYEPFEGAQVDQVDTKFPLSAVTQRPMFMYHAWGSQNAWLRQIVARNYLYLHPDTGARHGIADADWIIMESHHGRITVQARFAANVQADTVWTWNAIGKRRGAWRLDKDAPESRKGFLMNHLISDITPKGDYANADPVTGQAAWFDLRVSIRKADAEQNARGESEPQFAPLAFAEAEPGPLRYGAEFRARRAGVNHEQD
>NZ_CP013141.1|WP_057916671.1|4320532_4321501_+|YafY-family-transcriptional-regulator
MERIERIHALHRILTAARYPVTVQRLQEDLECSRATVYRDLAYLRDYLMAPVVGNGEAGFRYDTSEGDRFELPGLWLSSEELHSLLAAQQLLMRSGGGVLSNALAPLQQRIEKLLDEHAGGRRLPVERVRVIPHRTRRLDETAFRAVATAVLDRKQLTFEYRARSTDQRTRRSVSPQRLTHYRENWYLDAWDHERDALRSFSVDRISAAKIGEDTARDVADDELDQHLASSYGIFSGAPKGWATIVFSAKAARWVADEHWHSQQQGRFLPDGRYELKVPYSAGRELLMDVMHYGSDAEIVEPVVLREQAKSMLELALSNYGR
>NZ_CP013141.1|WP_057916672.1|4321500_4322427_+|patatin-like-phospholipase-family-protein
MPGADAPHISRDEPVALVLGAGGARGLAQIGVIEALQARSMRIVAVAGSSSGALVGGLFAAGKLEVYRDWLYGMSRTAMLRLLDPGLGQPGLFRGERLMHALRELTGEPRIEDLEIEFTAVAVDLIRQREVWLREGDLWDAVRASIAIPGVFPPYELHGRELVDGGLLAPLPIAATRLSDAHRLIAVDMHGWPERPPGALAQQNGAKAPGSEVAESKPSMLMRWFRRGADEASNGEQPPHELGFSELMARSLDMMQAQIARVQLALDPPELVIRIPRDACQFYEFWRAKELIALGREEAEKALDKAGY
>NZ_CP013141.1|WP_057972363.1|4322764_4323001_+|hypothetical-protein
MTVSTPSDRSADAAHADLDTALRYALAIGGLLVLMLPAARGSHGAIGWLPLWLVAMPAVAWWALHRFRLPAWRXXXHT
>NZ_CP013141.1|WP_036149715.1|4323135_4323900_+|endonuclease/exonuclease/phosphatase-family-protein
MNTRRLRLLSANIQAGSSTRRYSDYATRSWSHVLPAGNKRGSLDTIAQLAGEHDIVGLNESDPGSLRSGFTNQTHYLAQRAGFEYWSHQPNRRVGSVASSANGLLSKLEPREVVDHPLPGRISGRGVLIAHYGDDDDGLTVAVAHLSLGATSRASQLAFIAELLHDHPHAVLMGDFNCSADRPEMQALFRNTRLQPPSSALPTFPSWRPQRAIDHILLGDGLGFAGARAVPAALSDHLALSLELDVPHSALRSE

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Crispr_ID: NZ_CP013141_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_13

4379166-4379518

Orphan

Consensus_repeat	Method
GAAACCGTCAACGGCAGCATCAA	CRISPRCasFinder

6 spacers

The CRISPR arrays of NZ_CP013141_13

>merge|NZ_CP013141|13|4379166-4379518|CRISPRCasFinder
AGCAAGGTCAACGGCAGCATCACCGTCGGCTCCGGCGAAAGCCAAGGCACGCTGGAAACCGTCAACGGCAGCATCAAGATCGGCGACAACGCCCGCGTCGCCGACGCCGAAACCGTCAACGGCAGTATCAACGTCGGCGCGCGCAGCCAGACCGGCAGCCTGGAGACGGTCAACGGCAGCATCCGCGCCGGCACCGACTTCACCGCCGGCGGCGGCCTGGAAACCGTCAACGGCGGCATCTTCGTCGACCGCGGCGGCACCGTGCGCGGCGATGTCGAGACCGTCAACGGCGCGATCGGCCTGGTCGACACCGACGTCACCGGCGGCATCGAAACCGTCAATGGCGACGTCAC

>NZ_CP013141|13|12|4379166-4379518|CRISPRCasFinder
AGCAAGGTCAACGGCAGCATCAC	CGTCGGCTCCGGCGAAAGCCAAGGCACGCTG
GAAACCGTCAACGGCAGCATCAA	GATCGGCGACAACGCCCGCGTCGCCGACGCC
GAAACCGTCAACGGCAGTATCAA	CGTCGGCGCGCGCAGCCAGACCGGCAGCCTG
GAGACGGTCAACGGCAGCATCCG	CGCCGGCACCGACTTCACCGCCGGCGGCGGCCTG
GAAACCGTCAACGGCGGCATCTT	CGTCGACCGCGGCGGCACCGTGCGCGGCGATGTC
GAGACCGTCAACGGCGCGATCGG	CCTGGTCGACACCGACGTCACCGGCGGCATC
GAAACCGTCAATGGCGACGTCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057919362.1\|4371218_4372598_-\|transporter	unknown	unknown	gnl\|CDD\|367457
NZ_CP013141.1\|WP_057972388.1\|4379913_4381680_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP013141.1\|WP_057972391.1\|4391368_4393165_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057972389.1\|4381801_4382197_+\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|226211
NZ_CP013141.1\|WP_082638785.1\|4369252_4369714_+\|DUF3574-domain-containing-protein	unknown	unknown	gnl\|CDD\|371896
NZ_CP013141.1\|WP_057973257.1\|4375987_4377238_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP013141.1\|WP_169795692.1\|4393416_4393557_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057916256.1\|4400433_4400691_-\|YcgL-domain-containing-protein	unknown	unknown	gnl\|CDD\|377477
NZ_CP013141.1\|WP_144436784.1\|4370285_4370969_-\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP013141.1\|WP_057972386.1\|4373825_4374143_+\|DUF1820-family-protein	unknown	unknown	gnl\|CDD\|226900
NZ_CP013141.1\|WP_057919360.1\|4369885_4370140_-\|DUF2164-domain-containing-protein	unknown	unknown	gnl\|CDD\|378315
NZ_CP013141.1\|WP_057972393.1\|4393992_4395825_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235131
NZ_CP013141.1\|WP_082638786.1\|4374266_4375877_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223864
NZ_CP013141.1\|WP_031371230.1\|4400898_4401903_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
NZ_CP013141.1\|WP_057972385.1\|4372863_4373559_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP013141.1\|WP_057972394.1\|4397099_4400441_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222980
NZ_CP013141.1\|WP_057972387.1\|4377297_4378833_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP013141.1\|WP_057916255.1\|4401973_4403374_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP013141.1\|WP_057972382.1\|4365681_4368858_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	unknown	unknown	gnl\|CDD\|237017
NZ_CP013141.1\|WP_057972390.1\|4382241_4383006_+\|2OG-Fe-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|370779

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057919362.1\|4371218_4372598_-\|transporter	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	1.763e-100
NZ_CP013141.1\|WP_057972388.1\|4379913_4381680_+\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	2.55292e-106
NZ_CP013141.1\|WP_057972389.1\|4381801_4382197_+\|MAPEG-family-protein	gnl\|CDD\|226211	COG3686, COG3686, Predicted membrane protein [Function unknown].	4.06057e-24
NZ_CP013141.1\|WP_082638785.1\|4369252_4369714_+\|DUF3574-domain-containing-protein	gnl\|CDD\|371896	pfam12098, DUF3574, Protein of unknown function (DUF3574). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.	3.46914e-44
NZ_CP013141.1\|WP_057973257.1\|4375987_4377238_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	1.61769e-88
NZ_CP013141.1\|WP_031371230.1\|4400898_4401903_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	7.8404e-86
NZ_CP013141.1\|WP_057916256.1\|4400433_4400691_-\|YcgL-domain-containing-protein	gnl\|CDD\|377477	pfam05166, YcgL, YcgL domain. This family of proteins formerly called DUF709 includes the E. coli gene ycgL. homologs of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure.	6.45409e-32
NZ_CP013141.1\|WP_144436784.1\|4370285_4370969_-\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	7.51742e-86
NZ_CP013141.1\|WP_057972386.1\|4373825_4374143_+\|DUF1820-family-protein	gnl\|CDD\|226900	COG4517, COG4517, Uncharacterized protein conserved in bacteria [Function unknown].	1.0175e-45
NZ_CP013141.1\|WP_057919360.1\|4369885_4370140_-\|DUF2164-domain-containing-protein	gnl\|CDD\|378315	pfam09932, DUF2164, Uncharacterized conserved protein (DUF2164). This domain, found in various hypothetical prokaryotic proteins, has no known function.	2.50338e-26
NZ_CP013141.1\|WP_057972393.1\|4393992_4395825_+\|cation:proton-antiporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP013141.1\|WP_082638786.1\|4374266_4375877_-\|PDZ-domain-containing-protein	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	2.7049e-118
NZ_CP013141.1\|WP_057972385.1\|4372863_4373559_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	4.2539e-24
NZ_CP013141.1\|WP_057972394.1\|4397099_4400441_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	1.05623e-18
NZ_CP013141.1\|WP_057972387.1\|4377297_4378833_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP013141.1\|WP_057916255.1\|4401973_4403374_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP013141.1\|WP_057972382.1\|4365681_4368858_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	gnl\|CDD\|237017	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA.	0
NZ_CP013141.1\|WP_057972390.1\|4382241_4383006_+\|2OG-Fe-dioxygenase-family-protein	gnl\|CDD\|370779	pfam10014, 2OG-Fe_Oxy_2, 2OG-Fe dioxygenase. This family contains 2-oxoglutarate (2OG) and Fe-dependent dioxygenases. It includes L-isoleucine dioxygenase (IDO).	6.10024e-87

>NZ_CP013141.1|WP_057972387.1|4377297_4378833_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSAPSRPKPVVLLILDGWGHRDDPADNALAQATLPNWHALLASEPHTLIHTEGRHVGLPDGQMGNSEVGHMNLGAGRIVYQDLTRVDAAIEDGSFYANEELRAACAAAKANGATLQVMGLLSPGGVHSHEQHIFAMLELARREGVARVAVHAFLDGRDMPPKSAAPSLERLQQVCERVGNAHIASISGRYYAMDRDQRWDRQLRAWNAIVDAASEHRAASALEGLEAAYARGETDEFVAPTVIGSSAAMADGDAVVFMNFRADRARQLTAAFVDPTFSGYEARRPKLSRFVCLTEYDAKLPAPVAFGPDDLHNTLGELLAANGLTQLRIAETEKYAHVTFFFSGGREEPYAGESRILIPSPKVATYDLQPEMSCPELTEKLVASIRSGAIDVAVCNIANPDMVGHTGDLGAAIKAAEAVDQAIGAVAAAVREVGGALLVTADHGNLEMMRDPETGQPHTAHTVGPVPFVYLGSRKTTLRSGGALRDVAPTMLDLLGLAQPAEMTGQSLLER
>NZ_CP013141.1|WP_057973257.1|4375987_4377238_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MTLVAASLLVPASAAMAAAQNSSRETERKLEKIKTELKSVAAERRQLEGQRGDASQQLRAADEQVGHSNRALRETETRLAREQAALKDLQTRRDELNGKLGSQRQELSRLLRAAYAQGNDAPLKLLLSQDKVADSGRILTYHGYVQRDRARRIAELSTQVRELDAIEREIVERRVTLDSTRKQQRNQLGQLEKDRKARAALVAQINEKYEDRSTRERELGRDAKGLEQLLAKLRAAAARAEAQRRAAAKAKAEREAREAKAAATAAASGKPARTTTPRKPPVAVASTPPPQVGGLGWPVSGALLAGFGGTMPDGRSSEGLLIGAAAGSTVKAVSDGTVVYSEWMTGYGLLLIIDHGNGYMSLYANNDALLKDAGAAVRKGEGVATVGSSGGHGRPALYFELRRGGQPVNPNTWLRR
>NZ_CP013141.1|WP_082638786.1|4374266_4375877_-|PDZ-domain-containing-protein
MSLRHPLRSLLPLALAFGAAPALSQQAPAQPPPVQQAPATQAPDEPAPGKPAPDKQTPDKQAAEQPAADEPAAQPPTPDAAPAKDQEVPPAQAPSRDAPAKDAPGQKAPEQKPAQDKPADKPADKAVAGKGKKGDDASDSKVPIEEIRRYVAVYNAVKQAYVEPVDDAKLMHSAIRGLLFDLDPHSVYLDKVAAEDFDEQSRGAYDGIGVELQRQPDGSLRVISPIDDTPAARAGIKAGDLITAIDGKPFKVDEGDSSGPLRGAPGSKVVLTIVREGRDKPFDVTVARETIRVASVKGRMLEPGYGYVRVSAFQADTAADFESQLEKLKTQAGGKLRGLVIDLRSNPGGLLTSAVQIADDLLEKGKIVSTRGRIAISDAEFGATPGDRLDGAPVVVLVDAGSASASEVLAGALRDNGRARVVGSRTFGKGSVQTVLPLDNGDSVKLTTARYYTPSGKSIQALGIILDVLLRAAKSEDDKRPSYYSEATLPGHLHGDEEDAPGTNAGEVLEGDAPIASALAELKKPVATAAGDSKHR
>NZ_CP013141.1|WP_057972386.1|4373825_4374143_+|DUF1820-family-protein
MATLYKVTFLNAGKIYELYARKIASGNLWGFTEVSELVFDLHEGLVVDPTEERLRDEFGSTRVLHLPMQSIVRVEEVERKGQSAIRDATTGEKVVTPFPLPAKPR
>NZ_CP013141.1|WP_057972385.1|4372863_4373559_+|rhomboid-family-intramembrane-serine-protease
MFVAIPSRERTRLRWATPLLFALLWLCFIVSAVVLPDPEQRRLMLEWGALSGGLSSPLAWWEAIRDGSALRLFSALFLHADWAHLLGNLVFLLIFGLPAERAMGPWRLLALFLCGGAVANLAAVIAIGTPDRLIIGASGAVSALIGAYLALFPNAKLGVVVPLGLFLQFVKVPAPLLIGVWALLQVVFTFIGPAFGAVAWSAHLAGFAFGGAFALIARAGIARRLRRKRGY
>NZ_CP013141.1|WP_057919362.1|4371218_4372598_-|transporter
MQPSQRISRLTALALGIAGVISVGSAGATGFQIRENSIRNQGRSFAGSGVAKNDAAVVSNNPAAMVNVDSTTIRSDITIIDLTAKFTGGGSAAAGSPLARPLTGGNGGDPGDATPVPALSLVVPLTGSFEKLTLGASLSAPFGLKTEYDKDWVGRYNAVESEVKTIDLTFSAAVALTDRFSVGAGLIYERAEATLTNAVDFGSAICRVSVAACVTPNPVAAPFGPQKNDGFAKVKGDDYGIGWLVGFHFRPTDKFSIGYSHRSEIDHELEGTIDFTKPGNVSALFAARGITQYNSGPGGAKLTTPSVDTLSLQYEFTDQFRMMADIQATDWHSMQSVDIVRANGTPVTSEAFGWEDTMMYALGAEYDLSDSLTLRGGVAIDETPTNDHARTPRLPDNDRNLYSIGLTWNANEHLSVDAAYTRITIDSPTINTVSSSGSTLQGSYKGHADLFGLAAQYKF
>NZ_CP013141.1|WP_144436784.1|4370285_4370969_-|MOSC-domain-containing-protein
MLVDTLLCGRARPYTRPGSLSAIAKTPLAGRVRIGESGLEGDEQGDRRVHGGPDKAVHHYPYDHYRAWREELGPHALLDRPGAFGENLSSSGLTEAEVCLGDRFRCGSVLLEVSQARQPCWKLNDRFAIADMARRVQASGRTGWYYRVLEAGEVEAGDALDLVERAWPDWSLQRIATMLYTRTLDREELQAALALPLVPSWRKLVEARLARGAVEDWSSRIEGPVTP
>NZ_CP013141.1|WP_057919360.1|4369885_4370140_-|DUF2164-domain-containing-protein
MSEIKFSNEEKALIVAKLQRYFSEELKQSIGRFDAEFMLDFIADEIGAYFYNRGVLDAHALLSAKFEDIGDAFYQLEQPTDFKR
>NZ_CP013141.1|WP_082638785.1|4369252_4369714_+|DUF3574-domain-containing-protein
MSCRSLLSAALLCALTACASLAPLPVKPGDASACGERRLDRVLFGMNSPSGPVSDSQWQAFLAEVVTPRFPDGLTIYQAQGQWRGASGEIEREDSRAIDLVHLDSAAGRQRVVEIADEYKRRFQQEAVLVISLPARACFAQDSGGTRRESPAS
>NZ_CP013141.1|WP_057972382.1|4365681_4368858_+|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA
MISPELPAPPSGPRAALTAGWVRDEADHVRHLLELARLPAADRDAAQATAAELVKRVRARAQDQGAIEAFMRQYDLGSEEGVLLMCVAEALLRIPDQETADKLIRDKLGEADWKRHLGQSDSVLVNASTWGLMLTGKLVDLNDDTKRDVHNAFKRLVGRVGEPVIRLAVRQAMRIMGHQFVMGRTIGEALSRSKKGDNANYRYSFDMLGEGALTTKDALRYLQAYRDAIHAIGKSAQSGSASNDKDAVFGAPSISVKLSALHPRYEHAKRERVFAELTPRVLELAQLARNYGIGFTIDAEEADRLEMSLDVIAAAYSDASLDGWEGYGLAIQAYQKRAPEAIDFIADLARKTGRRIPVRLVKGAYWDSEVKRAQVDGQVGYPVFTRKPNTDVSYLANARRMLEASDAIYPMFATHNAQTIATIHQRAKAMGRERHYEFQKLHGMGDDLYAEVIPSHRLDVPCRVYAPVGSHEDLLPYLVRRLLENGANSSFVNRITDESIAIDELIQDPVETVSAFASIPHPRIPLPADLYRSFGNERTNSMGVNLANDQQLQTLAAEVNAAVGDWRAAPLVPGATVTGPNIAVTNPADRRETVGQWQAADSATVELALKNAVAAQEAWDATPAASRAAILEHAADLLEQRMPQYIALCTKEAGKTIPDGVAEVREAVDFLRYYGQQARKLFAPEALPGPTGESNTLHLSGRGVFVCISPWNFPLAIFAGQISAALAAGNSVIAKPAEQTNLIGYYAVKLLHEAGVPEAVLQFLPGDGATVGAALTRDPRVAGVAFTGSTDTARAINRSLAARDAAIGVLIAETGGQNALIADSSSLPEQLVKDAIGSAFTSAGQRCSAARVLFVQEDIADKVTTMLAGAMAELKIGNPGLLSTDVGPVIDEDALKMLVEHAARMDKEAVKIGEVAVDADSAHGSFFAPRAYTLKSLDQLHKEVFGPVLHVIRWKADQLDAVIDAINATGYGLTLGIHSRIDETIERISARVKVGNCYVNRNQIGAVVGVQPFGGQNLSGTGPKAGGPHYLPRFTTEKTITVNTTAAGGNASLLTLGD
>NZ_CP013141.1|WP_057972388.1|4379913_4381680_+|M28-family-peptidase
MSRTPLLTATSLVAAALVLSACNKPAETPDAKAPADAPAATPGTAADHAFDGAINAADFAQHVKVLASDEFEGRAPGSAGEEKTVQYLEAQFKRLGLKPGNGDSYFQTVPMVETTADESTSLKLEVKGQPRELKFGSDMVVGTRTGQAEVKLAASDLVFVGYGVNAPEQKWNDYAGVDVKGKTVVILVNDPGFHSQDATLFEGRRMTYYGRWTYKFEEAARQGAAAALIVHDDAGASYGWDVVKNSWSGAQFDLPAKDDPEPRLPVQGWITGDSARKLLGDLGQNLDELYKAAGKRGFKAIPLQAKASVDLKSKISEKSSRNVIARLDGAKRPDEAIVYMAHWDHLGNHTGEGGHEGHGAGEGKAGGADTIYNGAIDNASGVAGILEIAEAFSKQSPPPDRSLLFVSVTLEESGLLGSKYYVAHPTVPLNKTVAVINLDAMPIIGKAKDFTVVGYGSSELEDILKTIADGQGRVLHAEATPQDGFYFRSDHFNFAKAGVPALYAKGGDDLLEGGTEAGQKAQVDYRDHRYHKPADQFDPNWKLDGVVQDLDALYGVGKVLAGNEQWPNWYEGNAFRAAHDKLMAAPAK
>NZ_CP013141.1|WP_057972389.1|4381801_4382197_+|MAPEG-family-protein
MSMTVAYWCLLIAALLPYAWAALAKGSGQRYDNRDPRAWQSRQDNPRSNAAYAAHLNAFEAFAPFAAGVLGAQMAGVDTGVIAGLSLAFIACRVLHGVFYMTRKASLRSLVWAIGLGCVIALLAQAALAAA
>NZ_CP013141.1|WP_057972390.1|4382241_4383006_+|2OG-Fe-dioxygenase-family-protein
MNPAPSSEHQDFVDALRRDGFRFVAGEDMRTHLQRHGSLQDWAAFAASWNDLAPDTYLASVGRHRRRRHAVFRADRNGTIARLPHQPHYQSLNYNALQGDIERWFEPVRDDVANGATLATVLGFCRDFFGLLAPQVPGWHIELHQFRIEARSDEEGQPTPEGVHRDGVNYVLVLLIDRHNIVSGTTTIHTADGSLLGSFTLTAPLDAALVDDARVFHGVTAVTPQDPTREAHRDVLVVTFRAAGIAGAIADSND
>NZ_CP013141.1|WP_057972391.1|4391368_4393165_-|hypothetical-protein
MNAAVDSNPGGRTPAGASHPPRWYAGQPAAQDGTSGYTALLPADDEWSRDTVLRAIVADALQRNGQVVDEDTLEATVASVAAPGGALAQAALSWKLHPGETRADGRVSPPFHGYAVEVPAELQTTLVGYAKTWSAQRDAAPPAPIDGAVMELKTLARSGGHRDIEQTLEAIDAAIKAGSAASQAGRPLDAVAMSAVLEFATRSGHERQAAKLLERYSAIKDVTAGVKTLGQNAGRVFNGRDPVTGKALRTDDRVDAAFDLLDGGFKLAGGIGNVALMMGARNAGLVGSLIGIAPMGAAIVAFAAGAFELIKRAREALLAPRWDEFRERFPFAEGMEPKRAMNGVLRQIAGMPVDAGNALSTATRILDGLGQNPETRERFLAFLKQKVQPESLVDALASGGLDRLNTQQAMQLAQAAKGSAKEFMDLELQDVKRYVRDRDGDRERGTYLLPPELRDVANRNNNRVGGAVEDGLRVAAILSSGANALNGMYKDMLGKVQGSELGQGKLNEQQQKNLAAALVPAMRDGGLTQVDHLLASKDGSKLFAVQGDPQSPTRRMVTLDVAAASQQSVEASSQLAARAMATAEAPTVQVNQGGGRGF
>NZ_CP013141.1|WP_169795692.1|4393416_4393557_-|hypothetical-protein
MRALLALLMLLLLSGCQPGWEEQSRGDVAFAAQDRHSGSEPTRGLR
>NZ_CP013141.1|WP_057972393.1|4393992_4395825_+|cation:proton-antiporter
MHGGGLELALLFLLAAVIAVPVFRRFGLGAVLGYLTAGVVLGPYGVKVIRDAEPVLAASEIGVVMMLFVIGLELSPARLRVMRKPVFGAGGLQVLLSGLALGALAMFGGHMGWKAATVVGLGLALSSTAVCLQLLSERKGLATDYGRLAFAILLFQDLAAIPLLAAIPLLGKAAAVEGLNWMAVAKAVGAIAAVVFGGRVLLRQVFRVVARTQMPEVFTGAALLTVLGSAWIMQIAGLSAGLGAFLAGVLLADSEFRHELESQIEPFKGLLLGLFFMAVGMSIDLQRVLAEPGTIASIVLVLLSVKFLLLFGVGISAGGLEKRGAFQLATVMSLGGEFAFIVFNEAVKANLLDDPTRDRLIAAVGVSMALTPLLMIGAQRMLDAAPAEKPKRPYDDIPDHHPQVLIAGMGRFGQIVARLLVAHRTPFIAIENSADQVDFMRRFGNMIYYGDPARPELLRSAGAAQVKIFVIAIDDRDSGIRTVRTIRRLYPKAKVFARARDRRHAWDLMDLGAEPMRETFHSSLKLGEDVLVELGVAPETARDHVERFRELDERMLNAQYLVHDDEDALIQSARDARKELEELFDADRGEGMLADMVEKQGPVPEHVTRH
>NZ_CP013141.1|WP_057972394.1|4397099_4400441_-|ankyrin-repeat-domain-containing-protein
MPDAQTSRASSRDLALALAAGLVLALATGFGGSVGGALAALIGGALAQPAFAIAARLWQRRDAAPQWRSELPVLATLWGGATAATAVLVAWPLSALLQSGSLLAVLGLSVVAGLALLALWRLWPLWQEAEREGAALAPQWARLPDLDLGAWRGLGVAAIVAGLVGLILVLAWPGLLSDGLRWTLAVVFALVSPALHVLLQRIAPADYLPGVDFDPELDTVTQVDELGDDEALEPALYAAARAGKVERALELIELGADVNVLPATEDRDRRSLPVLAAVLPDLRLLRALIGAGVDLNAATAGMTPLLAATRDSWHGRPDAVMTLLANGADPRLADHEGNTPLHHAARSSDPGVAALLRDAQAELDPVNHDGFSPLGVACASGNWRLAKFLLERGAKTEQPGGAPALLAAAGGDEDDPAGVQLLLKHKARIDARDGQRRSALHVAAFAGHLDIVTALLAAGADAGAIDTQQRTPLLEAARGARPAVLERLLEHLPQGGIAEAAALDADGASALILACQAETASPPLVVRLLDLGIDPELRDRHGKRAVDRAAEAGRWSLVAALDRAYPLPAAVSGEGDSEDGEGERVIVDRMPAALLRDGLREGRAAELTGLAKLLSPSELGAQLHEEDGQIPSAERIDWLLGQGADVHVRDAHGDTVVFALLDRGLAALPALQALLRHGVSPAGRGGLGRFLATCSAGDQATRGLEQFALDLIERGADVFSPTPAGDPPLAIAVRLGWSRLLERLLAAGVDLNTRDSHGMSALHLAAALGRESMLKRLVANGAAPDLLAADGQTPLGVALSSGRRDLADWLDWRGWALPRRPLHAQDVPAAAIVGDADAVRRLLDLGLSVDALDSQGCTALLRAAGGGHRAVVDLLLARGADPQLAAHSGATPLSAAVSMRHAEIVDRLVAAGASLEQRLPGDLTVLMVACALGLTDLAARLLTAGADVQARDAQGRMALHCAAMFGFTARERSRLVALFDTLLLAGVDADQSAAGATPLLLLLGARAEPGTAADEDVLIAGLELLLDHDASLDVQDPRGFGPLHLAALHGLLRVVQRLMRHGANPDMRDALNRTPREIAVMRGFIDIAAEFTPPAPGNGSNVSMARFLRGPGG
>NZ_CP013141.1|WP_057916256.1|4400433_4400691_-|YcgL-domain-containing-protein
MQAYVYKSLRKADTYVFLSERDDFARLPDAVRDQLGSLQFVLETALTPERKLARADAAVVRENLRLRGFHLQFPPALEEARTPDA
>NZ_CP013141.1|WP_031371230.1|4400898_4401903_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MEYWLPVIWFGVIGFGVLMYVLLDGFVLGLGILAPFAEDEGQLDHMMNTAAPIWDGNETWLVLGGAGLLAAFPKAYALVLSALYLPVLLMLIALVFRGVAFEFRFKARRAKPAWGAAFALGSIFCAFAQGLILGAIVEGMPMQEGKYVGGVFDWFSPFSMLTGAAVVFGYALLGSTWLILKTDGRMQQIARTLARPLVLVVAVFIGLVSAWLPFLDSRIMARWFEGGNFYWLFPVPLLVIGNAYALWRAVMREGNDAQPFVYALLFFVLGFLGLVLGIWPNIVPGLSIWDAASPPSSQGFVLAGLVVLLPAILGYTYWSYRVFRGKIAADAGYH
>NZ_CP013141.1|WP_057916255.1|4401973_4403374_-|cytochrome-ubiquinol-oxidase-subunit-I
MDALLLSRIQFGFVISFHILFPAFTIGLASWLAFVEWRWLRTRDTLWRDLYFFWTKVFAVSFGMGVVSGIVMSFQFGTNWAVLSEQAGNILGPLLSYEVLTAFFLEATFLGVMLFGWSRVKERMHFLATCMVALGTLISTFWIISANSWMQTPAGYKIVEGVFEPDSWWAIVFNPSFPYRLAHMVLAAFITTCFVIGGVAASYLLRGVHVEAGKRMLKAAVIFAAITVPAQVFVGDLHGLNVREHQPIKVAAMEAHWESGAPGEGVPLILFAVPNEKAERNDYEIAVPKLGSLILTHTLDGDIQPLKSVPASERPPVKPVFYAFRIMVGLGVAMLLLVLFSLWQWWRGRLYQSRATLWGWRVLTLSGFVALLSGWYVVEIGRQPYVIYGLLRTADAVSPIAAASVMTSLIVFAVVYFVVFGAGIGYLVKLIRKGPHPHEPPPRNEQGEKTPARPLSLPDESSEADA

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Crispr_ID: NZ_CP013141_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_15

4695836-4695943

Orphan

Consensus_repeat	Method
GTAGGAGCGGCGCAAGCCGCGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013141_15

>merge|NZ_CP013141|15|4695836-4695943|CRISPRCasFinder
GTAGGAGCGGCGCAAGCCGCGACCAAGGGACATGCAGAGGGAGCACCGCCCGCGTCGATGATCGAAGCCTCGAACTATCGCGGGGTAGGAGCGGCGCGAGCCGCGACC

>NZ_CP013141|15|14|4695836-4695943|CRISPRCasFinder
GTAGGAGCGGCGCAAGCCGCGACC	AAGGGACATGCAGAGGGAGCACCGCCCGCGTCGATGATCGAAGCCTCGAACTATCGCGGG
GTAGGAGCGGCGCGAGCCGCGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057919920.1\|4679452_4681129_-\|type-II-secretion-system-ATPase-GspE	unknown	unknown	gnl\|CDD\|131585
NZ_CP013141.1\|WP_057919919.1\|4705532_4705967_-\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP013141.1\|WP_057916903.1\|4677439_4677874_-\|type-II-secretion-system-major-pseudopilin-GspG	unknown	unknown	gnl\|CDD\|377975
NZ_CP013141.1\|WP_057916895.1\|4697396_4698479_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200
NZ_CP013141.1\|WP_057972523.1\|4692817_4693702_-\|DsbC-family-protein	unknown	unknown	gnl\|CDD\|239318
NZ_CP013141.1\|WP_082638816.1\|4706219_4707461_-\|O-succinylhomoserine-(thiol)-lyase	unknown	unknown	gnl\|CDD\|181554
NZ_CP013141.1\|WP_057972524.1\|4696299_4697400_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|275201
NZ_CP013141.1\|WP_057916897.1\|4694295_4695243_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP013141.1\|WP_057972522.1\|4688598_4692552_-\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|235394
NZ_CP013141.1\|WP_082638814.1\|4682073_4685874_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP013141.1\|WP_057916894.1\|4698679_4700149_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP013141.1\|WP_144436620.1\|4685870_4688381_-\|RHS-repeat-protein	unknown	unknown	gnl\|CDD\|368509
NZ_CP013141.1\|WP_057973277.1\|4707457_4708525_-\|homoserine-O-succinyltransferase	unknown	unknown	gnl\|CDD\|181553
NZ_CP013141.1\|WP_057972526.1\|4700538_4700964_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|377329
NZ_CP013141.1\|WP_082638815.1\|4704631_4705513_+\|DUF2785-domain-containing-protein	unknown	unknown	gnl\|CDD\|371322
NZ_CP013141.1\|WP_057972527.1\|4701096_4704147_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP013141.1\|WP_057972520.1\|4678104_4679322_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP013141.1\|WP_082639049.1\|4700211_4700529_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057973276.1\|4695302_4695776_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP013141.1\|WP_144436619.1\|4681843_4682065_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057919920.1\|4679452_4681129_-\|type-II-secretion-system-ATPase-GspE	gnl\|CDD\|131585	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP013141.1\|WP_057919919.1\|4705532_4705967_-\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	6.7171e-45
NZ_CP013141.1\|WP_057916903.1\|4677439_4677874_-\|type-II-secretion-system-major-pseudopilin-GspG	gnl\|CDD\|377975	pfam08334, T2SSG, Type II secretion system (T2SS), protein G. The Type II secretion system, also called Secretion-dependent pathway (SDP), is responsible for the transport of proteins across the outer membrane first exported to the periplasm by the Sec or Tat translocon in Gram-negative (diderm) bacteria. The T2SG family includes proteins such as EpsG (P45773) in Vibrio cholera, XcpT also called PddA (Q00514) in Pseudomonas aeruginosa or PulG (P15746)in Klebsiella pneumoniae. The PulG is thought to be anchored in the inner membrane with its C-terminus directed towards the periplasme. Together with other members of the Type II secretion machinery, it is thought to assemble into a pilus-like structure that may function as a dynamic mechanism to push secreted proteins out of the cell. The polypeptide is organized into a long N-terminal alpha-helix followed by a loop region that separates it from a C-terminal anti-parallel beta-sheet.	2.69837e-35
NZ_CP013141.1\|WP_057916895.1\|4697396_4698479_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	6.99201e-108
NZ_CP013141.1\|WP_057972523.1\|4692817_4693702_-\|DsbC-family-protein	gnl\|CDD\|239318	cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.	2.76468e-58
NZ_CP013141.1\|WP_082638816.1\|4706219_4707461_-\|O-succinylhomoserine-(thiol)-lyase	gnl\|CDD\|181554	PRK08776, PRK08776, O-succinylhomoserine (thiol)-lyase.	0
NZ_CP013141.1\|WP_057972524.1\|4696299_4697400_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	3.57155e-100
NZ_CP013141.1\|WP_057916897.1\|4694295_4695243_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	1.44792e-166
NZ_CP013141.1\|WP_057972522.1\|4688598_4692552_-\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|235394	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional.	0
NZ_CP013141.1\|WP_082638814.1\|4682073_4685874_-\|hypothetical-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	2.26502e-23
NZ_CP013141.1\|WP_057916894.1\|4698679_4700149_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP013141.1\|WP_144436620.1\|4685870_4688381_-\|RHS-repeat-protein	gnl\|CDD\|368509	pfam05593, RHS_repeat, RHS Repeat. RHS proteins contain extended repeat regions. These repeats often appear to be involved in ligand binding. Note that this model may not find all the repeats in a protein and that it covers two RHS repeats. The 3D structure of an RHS-repeat-containing protein (the B and C components of an ABC toxin complex) has been determined. The RHS repeats form an extended strip of beta-sheet that spirals around to form a hollow shell, encapsulating the variable C-terminal domain.	8.84537e-05
NZ_CP013141.1\|WP_057973277.1\|4707457_4708525_-\|homoserine-O-succinyltransferase	gnl\|CDD\|181553	PRK08775, PRK08775, homoserine O-succinyltransferase.	4.34807e-139
NZ_CP013141.1\|WP_057972526.1\|4700538_4700964_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|377329	pfam04364, DNA_pol3_chi, DNA polymerase III chi subunit, HolC. The DNA polymerase III holoenzyme (EC:2.7.7.7) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi.	2.01719e-36
NZ_CP013141.1\|WP_082638815.1\|4704631_4705513_+\|DUF2785-domain-containing-protein	gnl\|CDD\|371322	pfam10978, DUF2785, Protein of unknown function (DUF2785). Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.	5.05242e-41
NZ_CP013141.1\|WP_057972520.1\|4678104_4679322_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	1.20535e-125
NZ_CP013141.1\|WP_057973276.1\|4695302_4695776_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.28381e-18
NZ_CP013141.1\|WP_057972527.1\|4701096_4704147_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0

>NZ_CP013141.1|WP_057973276.1|4695302_4695776_+|RDD-family-protein
MSAADPAPAKPAALVGWRLFALFYDFWPVTALWLVASAAFTIAYTLSGHGQRENIPPFSALQWALWLVCWLIAGGYATLSWRRGGQTLGMRPWRLRVIGADGAAPEWRALAIRYAVGTVSLAALGLGFWWAWFDRDRLTWHDRASGTRILRVPKRPK
>NZ_CP013141.1|WP_057916897.1|4694295_4695243_-|site-specific-tyrosine-recombinase-XerD
MSASTPAERRSQAMALPPLGDADDAAIKSFLDTIWAESGLAQQTLDSYRRDLEGLARWRDGSGIANADRSALFDYLAWRTREGYSPRSNARLLSALRAFHAFLLRRGVRSDDPTALLAPPKLPRSLPKALAESQIEALLAAPAVDEPLGLRDRAMLELMYASGLRVSELVNLPSTAVNLRQGVLRVTGKGSKERLVPLGEEAQHWLERYLAQSRPQLAGKRALAPLFLAASGEAPSRQEFWHLVKRYAAVAGIDPAKISPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVAREQLKRLHAQHHPRG
>NZ_CP013141.1|WP_057972523.1|4692817_4693702_-|DsbC-family-protein
MMKRIIFAVLGAISLSACAQAPQGAAAKSDPAAPAKTAAAAKGAAPEVKAGSADALAVEAIRQLNPNVSIDKVGPSPVPGFREALAQGQVVYVSDDGRYLFLPGSGGALFDTQAKKNLSESSLAGMRKDLLKTIPASERIVFAPANPKHTVTIFTDVECGYCRKLHSEIAEYNRQGIAVEYLAFPRMGIGSEDYKKMVSVWCAADRRKALTDAKSEQSIPNKDCKNTVTMQYNVGQRAGLTGTPMILTSEGIQLGGYVPPAQLREALDKIAADAKPAASGAKPTAAVAVPTGGR
>NZ_CP013141.1|WP_057972522.1|4688598_4692552_-|phosphoribosylformylglycinamidine-synthase
MIVLEGHSALSSFRRERLQARLSALHPSIRLLDAWPVYWVEPDTGATPDDATLRRILQAEPHEAARTDAAVSRYVTPRLGTLSPWASKATELLRGAGQPVKRVERGTRYDLEGWPSDAATQGALAKVLHDPMTQSLLEARDDAAALFAVPARGELERIPLDELESANGRLGLALADDEIGYLRERYAALGRTPSDVELMMFAQANSEHCRHKIFNASWTLEGREQPQSLFKMIKHTHAHTPENTLSAYSDNAAVVEGYPARRFRPQPGSQAYAAEAQIPSAFCIKVETHNHPTAIAPFPGASTGNGGEIRDEGATGRGGRPKAGLCGFSVSHLRIPTLPQPWEGERALNPRMAPALEIMLDGPLGAAAFNNEFGRPNLVGYFRSFELSEGQAGNASLARAYDKPIMLAGGLGAIDRVQVAKLGLKPGHAVIVLGGPAMLIGLGGGAASSVASGDSAEALDFASVQRDNPEMERRCQEVIDRCVALGDANPIDSAHDVGAGGLSNAIPELLHDSSLGGVIDLAKVPSDDPSLSPMQLWCNESQERYVLGLPADRVADFAAICERERCPFAVVGYATAEERLVVGYGATVETVYGENDSATAYPIDLPMDLLFGKPPKMHRDTRYPADAPWPALQWGGLDLRDAGLRVLAHPTVAAKNFLITIGDRTVGGLVARDQMIGPWQLPLADCAITLSDFDGHVGEAMAIGERTPLALLDAAAAARMAVGEAITNLCAAPVESLNRIKLSANWMAAASHPGEDALLFDAVKAVGLELCPELELSIPVGKDSLSMQAQWGSGENASKSVSPVSLIVSAFAPVVDVRQQLTPLLSRDTDSELWLIGLGAGKQRLGGSVLAQCHPEAGSEGGLPAFAGLPGEGTRHETGVPDLDSPQRLRDFFELIRDAREAGLLLAYHDRSDGGAFAALSEMAFCSRLGLDISLDGWGEDPFRTLFNEELGAIVQIAAEDRAEFADLVARHGLIDCAQRIAKPTTAAAVRVKEDGKVLVEWRWDELFDAWWSTSHALQKLRDNPECADEERAIARDFNAPGLKPKLSFDAAEDVAAPFINTGARPKVAILREQGVNGQIEMAAAFDSAGFEAFDVHMSDLISGRFRLEDFKGFAACGGFSYGDVLGAGRGWATSILERSALRDAFAAFFAREDSFSLGVCNGCQMLAQLKPIVPGAEHWPVFLRNRSEQFEARLGLLEVAESPSLFFRGMAGSRIPVAVAHGEGQASFASNLDQSAANVSLRYIDGDGRVADRYPLNPNGSPDGIAGLTSNDGRATILMPHPERTLRNANFSWSPRDWSGDSPWLRMFRNARVWVG
>NZ_CP013141.1|WP_144436620.1|4685870_4688381_-|RHS-repeat-protein
MRYLCGVLLAVVSCTAGAQKAPWEEYDKFVKSAQTIKTEGPGLLGDSVNLYTGATSFAATDVSLPGNSDLAVAIGRRFSAQSDARNRPFADWDWDVPYISGTFSRSSGWVIGDIAPDATPNRCSSPTSPETARPPIVKVASSTPGRSAPVQAWEYWSGYRMSVGGGDQELLIATAQTKPRPTDGKTYPWVTKQFWHLSCLPNLQSAHPGEGFLALAPDGTRYRFDWMVARQTDDLVKPFAGDGTILSRPVPRDEIRLYATRVEDRFGNWVAYNWSGNQLASITSSDGRQLSLTWESANGYDRVAKVAVNTTPVREWNYGYSAYSRLTSVTLPDGGQWKLNLLEMWGAPFYEQAEETMADGRRVPVQDKALSCSWMRVLRPLTRTATITHPSGATGEFIFQTIRHGRNSVRSECLPPPNLGGTLPDNPEPEDTLTSMVPARFDVLAIRTKRITGAGLPADTWNYDYTTPVGSWEDGCANCATTKTTTVTGPGGERTVNTYGVVFNANEGQLLKTEVFAGNALLRTSATEYLSNTAAEQQNVFAHRMGISPQVRLDSFSSESLRPVTESSTQQDGATFANKVNGFDVFAQPTNRTEVSSLGYSRTNTTEYYADLSKWVIGQVQKETNVNTGAVVSQADYDAATALPVRTYAYGKLQQTLEYYPDGTLSALKDGRNLTTSLSNWKRGMPQTIRFQDGAKKDVVVDNNGWVASVTDENGHVMNYSYDLMGRMTRIVYPTGDDTVWNDTALSFEQVAGVEYGLPAGHWRHVVSTGNGKKTTYFDALWRPVIEQEEDIADPQSTARWTMKCYDPEGRVTFSSYPRNPFTEGAPAFDCAGLTP
>NZ_CP013141.1|WP_082638814.1|4682073_4685874_-|hypothetical-protein
MSRREKGLGETKIVFGGDMTQDANFVTRSIRRGSLSRRLGTWSAAAALWLLMSFAAQAAGGTPAITISVNPIPGYEEPATLEVYAEGSGDAGIEWIALYQNGVQLIKVNDYIVDKTVTGLPAGTYYFSATAKDFGGRTNTVTKQVVIQPANQAPTVSLSLPGGTQYLTPANITLASNPSDSDGSISKVEYFANGVWVAASMSPPFTAQWNNVSPGTYTLVASAYDNKNQHGNSAPVSVVVSTAEAEFAGQIVPVSMRPGAVYPVRVQMKNTGTSVWRNGDGYRLGSSNPGDNYTWGMSRAGLVGDVGPGQTAVFDFNVTAPASDGDYNFQWRMLKEGVQWFGSASANQVVQVRTPPALASEFVSQSVPTSMVPGATYSVSVQMRNVGTAIWRSSESIRLGSFNPNDNGTWNIARIPVAGDIAPGQVATFGFTVKAPIASGSYNFQWRMLKEGVAWFGDPSANQVVQVQAPPASSLLGVRTRYDVLGRVVSVKQDSELGVLTSTTEYLGGLQTAVTNPRGNVTLTAFHAFGAPSYDAPVVISSPEGVYTEIARDVFGKPTSLRRRNADQSLSLYRYLVYDANQRLCKSVEPETGATVTAYDDAGNPAWSAAGLSLPSTSNCDFTEAYSSGRRVDRSYDNRNRLEGLTFPDGRGNQSWLYTPDGLPREVTTSNEGVGQGVVVNTYGYNKRRLLSAESMSQPGSSTWTSTNGFDGNGNRSRYTTPDGLQVNYANNALGQPTAVSTAWGTHASGISYYPNGAIKQFTYGNGIVHSMTQNARQLPVLSVDAGVIDFSTGYDSNGNVTSISDRLRGDHYSRWMGYDNLDRLTSAGSCSFKGDCWHRFTYDVLDNIKTWSLGGVKNHRYLYNGNNHLTNIQSVNADGSTPTVIGLGYDVQGNLDNKNGQDYDFDLGNRLRKVTGKEIYRYDAYGRRVTATGRPDTTFSQSFYNQAGQLLLREEHHSAEAESDSHPELNIPHIYLGSSLLATLEWNRAAGNGQIKYQHTDALGSPVVVTNTAGQVLERTEWEPFGAAIREPGQPAYNGVGYTGHVMDGATGLTYMQQRYYDPAIGRFLSVDSVQVDSNSGDNFNRYSYVNNNPYKFIDPDGRQELEFLALRGVLAFAAADAVTPEPSDAAAPLKLAGYGAAIAGTAIGGAIVWAANEAMDAPADSGAGNTNPYNGPVDSPVVVVDSDGNAIPVEQGEQLKGSPDGRYQQVLGQDGKPTGTRVDKGGHRGQSDPKAQGPHGHRPGVTDETGNPHLPLNPPRGSPN
>NZ_CP013141.1|WP_144436619.1|4681843_4682065_-|hypothetical-protein
MGKFTYDDVVRIVETADESLRPGSVGWVVGVFEERPVGSYFSQFPPGVVYTVEYEDGEAKEVHEDFLEAGRLP
>NZ_CP013141.1|WP_057919920.1|4679452_4681129_-|type-II-secretion-system-ATPase-GspE
MRIVEALLAKGRLKEPDLARARRLQEETGGSLLALLARLGLVSERDHAETVAAALELPLVSIKDAPELPPEGVALTPKFMKQFAVCPVAEGEHHVDVLMADPQDIYQLDALRLATQREVRPYVALRSEVGDLVERWYGQGRSAMGAIVETAEGEGAGDLDDVEHLRDLASEAPVIRLVNLVIQRAVELRASDIHIEPFENRLKVRYRVDGVLAEGESPPANLTAAVISRIKIMAKLNIAERRLPQDGRIMLRVQGKELDLRVSTVPTAHGESVVMRLLDRETVVFDFYKLGFTDEFLPQFQKVLDQPHGIMLVTGPTGSGKTTTLYTALSKLNTSDVKIITVEDPVEYQIEGINQIQAKPQIGLDFSHALRSIVRQDPDIIMIGEMRDLETCRIAIQSALTGHLVLSTLHTNNAAGGITRLLDMGVEDYLLTSTINGILAQRLVRRLEPTHAEKYLASPEEIDKFNLRRYQPEGEIFLFRPRGSALAPSGYHGRTTIMEFLVMNDELRRAVMRHAGMGEIEQIARDSAGMRTMYEDGIVKALAGQTTIEEVLRVTEDA
>NZ_CP013141.1|WP_057972520.1|4678104_4679322_-|type-II-secretion-system-F-family-protein
MPLYHYKALNARGELLDGQMEAASSTEVVQRLQEQGHLPVEAKLASEAGASSSWRALFKPKPFTGARLVQFTQQLSTLLGAGQPLDRALTILLDLPEDDTAKSTVADIRDAVRGGTSLSVALERQHGTFSRLYINMVRAGEAGGNLHETLSRLDDYLERSRVLQGRVINALIYPAILMAMVGLSLMFLLGYVVPQFGAMYESLDAELPMFTQVVLWLGLFVRDWWIVLIAIPAVGFLWFDRKRRDPAFREALDAWLLKRKFVGPLIAKIETARLARTLGTLVRNGVPLMTAIGIGRNVLNNRILAADVDAAGEDVKNGVALSTALGKGKRFPRLALQMIQVGEESGALDAMLMKTAETFEQDTGMALDRMLAALVPVVTVVLAGVVATVVMAVLLPLYDLTNAIG
>NZ_CP013141.1|WP_057916903.1|4677439_4677874_-|type-II-secretion-system-major-pseudopilin-GspG
MRNPRSITRSPSPAGQRGMSLIEIIIVIVLIGAVLAFVGNRVLGGKDRGDYNLAKGQVQTLAGKIDSFQMDTGRLPGSLEELVKQPADANGWLGPYAKETELKDPWGHAIEYRQPGESGPYDLVSYGKDGKAGGSSVDGDIKNN
>NZ_CP013141.1|WP_057972524.1|4696299_4697400_-|LPS-export-ABC-transporter-permease-LptG
MKPFPKIHDVYVGKTVLGTVLLTWAVLLGLDFMLSLVGEFGDVGKGRYGLMQALAYMAMTVPRRAYALFPYAAVIGALMALGQLASTSELTVLRAVGLSRRRLSLAVAGALALLTLLMVVNGETLAPEGQRRADALKTAAKSNNQVVAQYSGVWAREGDVILSASQGQERSEDQDRWLELRDVSLYQFGQDGRLVSLALAKIAEHRPGGWLLRDVTRTTFLAKSAEQVHVAEERWESKLDSAALMSGSNRPRYLSAKALHKAIEDRERNRLDAAEFEAYYWGRWFYPLNVLTLCLAAIPFAFGSLRSGGMGKRLFIGIVFALLFWQLQTQFVELAKVFRFDFRLAYAAPTVVMLAVSAYLFKRRSG
>NZ_CP013141.1|WP_057916895.1|4697396_4698479_-|LPS-export-ABC-transporter-permease-LptF
MLKLDRYLTGEFAQAVFATLVVLLIVSVGGAFTDVLEDIAKGKVPAGLMLLQLGLVLIKWLPLILPLALMLGLMLGIGRLYRDSEMPVIASIGVGPRRLLKPLLMVVGPIVAVVAACSLWLGPWADRASREMINEASRSLVVAGLEPGAFTGLPNDNGVIYVGAMSNDGTRFERIFIYRNKPDRQDVTTSKTGHLTVRPNGDRYLTLEDGFEVEGPKDGGLNYRLMRYASNDVLLPASEDRYDPSLPEMMSTTQLFGDPRREAAAQLHYRIAPPLLALAFALLAVPLARSTPRQARYGSVLMGFLAYLIGNNFMMMGKGWIEDGKIPTFLGLWWLTLPLLAVAGWLYFRDGRVARRRVAR
>NZ_CP013141.1|WP_057916894.1|4698679_4700149_+|leucyl-aminopeptidase
MTLEFDLNRDALAAAQTDCVVVGAFADKTLTAAARTLDEVSGGRLTALLERGDISGKTGKTSLLHDLPGVTAPRVLVIGLGEAGKFGVAQYLKAVGDAARALKAGPVEHALLTLSEEPVTGRDAAWAIRQAAIAADHACYRYTATLGKKKDEPGLRKLSIRGDDATALAQGQAIAAGVAFARELGNLPPNICNPAYLAEQAQEFAGRFDNTSCEVLDREQMQALGMGSLLAVARGSANPPKLIVLKYDNGGDAKPYVLVGKGITFDTGGINLKVQGGIEEMKFDMCGAASVLGSFVSAVGMQLPINLVVIVPAVENMPDADAYRPSDVLTSMSGKTIEVGNTDAEGRLILCDALTYAQRFEPQALLDVATLTGACVVALGKFATGLMSKDDDLAAELTSAGEQVFDRAWRLPLWDEYQTQLESTFADVYNIGGRWAGAITAGCFLSRFTEGQRWAHLDIAGVSNEEGKRGLATGRPVGLLSQWLLERAA
>NZ_CP013141.1|WP_082639049.1|4700211_4700529_+|hypothetical-protein
MSPYAQAGFTPVDWLLLALGLFWIFMWLHGDQQEFGHRRSPWMNIGIVVLAMLFVPIYLARTRPAGRKLKAVGAFFLLLLGWFALNVGGALLGYFVFGGSAAYTG
>NZ_CP013141.1|WP_057972526.1|4700538_4700964_+|DNA-polymerase-III-subunit-chi
MARADFYLIQTPRFKEQPLRLVCELARKAHDAGLPTLILARNAEQAEALDDMLWDMGEDAYIPHQIAGADLDEEEADVLIAAPEVDAPLRPLVINLRDTPVQDGFDRVLEVVPADDSARGPLRERWKQYQARGLTLNKHDM
>NZ_CP013141.1|WP_057972527.1|4701096_4704147_+|valine--tRNA-ligase
MSLASSYDPKQFEARLYEQWESSGVFQPRGEGQSYTILLPPPNVTGTLHMGHAFQHTLQDALIRYHRMRGYRTLWQMGTDHAGIATEMVVGRNLAIEGKGETRDSLGRDKFIEKVWDWKQQSGGTIERQMRRLGASGDWSRSVFTMDPMASDAITEAFVRLHEKGLIYRGQRLVNWDPVLKTAISDLEVANEEENGHMWSIRYPLADGASYEYVERDADGNETLREIRDYVVVATTRPETMLGDTAVMVHPEDERYIAIHGKFVDLPLTGRRIPVITDSYVDRAFGTGVVKVTPAHDFNDYAVGQRHSLLSINIFAPDASVWTLSGPTALKHVLSSADPDFTKIDRDACTPQQNQYADDFSLFAEQGMAAIVEKYIPATYRGLDRFEARKMIVADLDVAELLIEIKPHRLQVPRGDRSGQVIEPYLTDQWFVKMDALAQRGLELVESGEVKFVPANWINTYRHWLENIQDWTISRQLWWGHRIPAWTVRSGESDFTPIIGEIVARTEADAEVAARAKLLGSLGRDNYDKIKDRIELAQDPDVLETWFSSAMFPFSTQGWPNEDKMGELGFDIALPTSVLVTGFDIIFFWVARMIMMTDELVGRVPFRDVYITGLVRDKDGQKMSKSKGNILDPLDIIDGITAEALVAKRTTGLMKPQDAPKIEKATRKEFPDGIPAFGADALRFTMTALAGPGRDIKFDLGRAEGYKNFCNKLWNATRFVLMNTEDANFTGAPQPKTDAERWILAQLAKAAAEAETHFAAYRFDLLAQTLYEFAWNAFCDWFVELAKPALQGDDAAAADSTRHTLLYVLERLLSLLHPLIPFVTEELWQQVAPKLGIAETTVMLRPYPQAGDLSANYAQAEADVEWLKGMVSALRKVRSELNVSPQKNVGLLLAKGDAADRDRATRFDSQLRFLNRLESIEFVADANDAPPAASAVVGELTLLVPLEGLVDLGAERTRLDKEIKRVAGEIGKCQGKLASETFVQNAPAAVVEQERKRLVDWNVQLEGLTAQRTKLG
>NZ_CP013141.1|WP_082638815.1|4704631_4705513_+|DUF2785-domain-containing-protein
MRLVLLLSACLLAAPAFAGVCPPAGHTAASLQALKARQFALPDAAEKQALAAGLIGCLSASDPELRDGIAFEALSQWMRAGDFDANALRAMRDSLYATLGSEDGPGFGPPFAALVLSEVARTDRIKAWMTPQERAAMVERAAAYVESVRDYRGYIEGQGWRHGVAHGADWLMQLSLNPALERAQYERILAAIASQAVPGNGHAYVFGESERLARPLLFTAQRGLLSAEDWQAWFAALSAKVGKLDRADYAGWLGRRHDLTAFLSGLYVQADQSEDAAIKALKPAILAALKQAP
>NZ_CP013141.1|WP_057919919.1|4705532_4705967_-|ribosomal-protein-S18-alanine-N-acetyltransferase
MREDDLEVVHAIEIRAYEFPWTPGIFRDCLRADYPAWVLSEGERIIGYFLMSVAAGEAHVLNVCVAPEAHGHGYGRKLLRALVHIARGRGAERVFLEVRPSNSGAIALYHNEGFNEIGRRPRYYPARGGREDALVMAIELFPEE
>NZ_CP013141.1|WP_082638816.1|4706219_4707461_-|O-succinylhomoserine-(thiol)-lyase
MSTQNNGAAPVTTTPSTTSTRSTCTAAVRAGIDRDTAYGAVTPPIVLSSNFSFAGFNDKRQYDYTRSGNPTRDLLGEALAELEGGAGGVITSTGMSAITLVLHAFLKPGDRIVVPHDGYGGSWRLFNALAAKGAFELITADLTDPRSLTEALATKPAVVWIETPSNPLLRITDLRFVIEAAHAQGALTVVDNTFLSPALQRPIAFGADLVVHSTTKYINGHSDVVGGAVVAKSAEHHQQLTWWANALGLTGSPFDAFLTLRGLRTLDARLRVHQENTQAIATLLDNHPAVRVVHYPGLESHPGHALAARQQKGFGAMLSVEIEGGEDAVRAFVEGLTCFTLAESLGGVESLIAHPATMTHAAMSLEARTAAGISDGLLRLSIGIEHVDDLVADLEAALERAAAAVATAARVKR
>NZ_CP013141.1|WP_057973277.1|4707457_4708525_-|homoserine-O-succinyltransferase
MSFANSPAATFERSDSFVSYASPAIVSPDVFERTGRAAATRGEIAVELELRHSGRRNLILRYETQGDRSLPALFVAGGISAHRHLAPSREFGEQGWWQSQVGHGRSLDPSQHYLISFDWIGADGTLDVALDPADQADAIAALLDALRIERLQAFIGYSYGAMVGLQFASRHASRLGELVSISGTHRAHPYAAAWRALQRRAVALGALQCDESQGLALARELAVLSYRTPEEFAERFGNAEVRDGRVRVAAEDYLDHCGNKYVARTPTTAFLRLSESIDLQQIDPSTIRVPVTVVAVSEDRLIPLSESYDLIERLRGETRLRVLRSIYGHDACLKEESDINTILREALADCTQVAA

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Crispr_ID: NZ_CP013141_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_14

4694091-4694215

Orphan

Consensus_repeat	Method
TGCCGCCTGGCGCTGCTTGGGGTACTCGCGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013141_14

>merge|NZ_CP013141|14|4694091-4694215|CRISPRCasFinder
TGCCGCCTGGCGCTGCTTGGGGTACTCGCGATCTGACCGGACGTGCCCGGCCCGGCGCAGGGGCGCCGGGCGTTCAGAGCAGCAGGCGGCAATGCCGCCTAGCGCTGCTTGGGGTACTCGCGATC

>NZ_CP013141|14|13|4694091-4694215|CRISPRCasFinder
TGCCGCCTGGCGCTGCTTGGGGTACTCGCGATC	TGACCGGACGTGCCCGGCCCGGCGCAGGGGCGCCGGGCGTTCAGAGCAGCAGGCGGCAA
TGCCGCCTAGCGCTGCTTGGGGTACTCGCGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057919920.1\|4679452_4681129_-\|type-II-secretion-system-ATPase-GspE	unknown	unknown	gnl\|CDD\|131585
NZ_CP013141.1\|WP_057919919.1\|4705532_4705967_-\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP013141.1\|WP_057916903.1\|4677439_4677874_-\|type-II-secretion-system-major-pseudopilin-GspG	unknown	unknown	gnl\|CDD\|377975
NZ_CP013141.1\|WP_057916895.1\|4697396_4698479_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200
NZ_CP013141.1\|WP_082638814.1\|4682073_4685874_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP013141.1\|WP_057916897.1\|4694295_4695243_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP013141.1\|WP_057972522.1\|4688598_4692552_-\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|235394
NZ_CP013141.1\|WP_057972523.1\|4692817_4693702_-\|DsbC-family-protein	unknown	unknown	gnl\|CDD\|239318
NZ_CP013141.1\|WP_057916894.1\|4698679_4700149_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP013141.1\|WP_144436620.1\|4685870_4688381_-\|RHS-repeat-protein	unknown	unknown	gnl\|CDD\|368509
NZ_CP013141.1\|WP_082638815.1\|4704631_4705513_+\|DUF2785-domain-containing-protein	unknown	unknown	gnl\|CDD\|371322
NZ_CP013141.1\|WP_082638813.1\|4676368_4676857_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP013141.1\|WP_057972526.1\|4700538_4700964_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|377329
NZ_CP013141.1\|WP_082639048.1\|4676853_4677288_-\|type-II-transport-protein-GspH	unknown	unknown	gnl\|CDD\|227305
NZ_CP013141.1\|WP_057972524.1\|4696299_4697400_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|275201
NZ_CP013141.1\|WP_057972527.1\|4701096_4704147_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP013141.1\|WP_057972520.1\|4678104_4679322_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP013141.1\|WP_082639049.1\|4700211_4700529_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057973276.1\|4695302_4695776_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP013141.1\|WP_144436619.1\|4681843_4682065_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057919920.1\|4679452_4681129_-\|type-II-secretion-system-ATPase-GspE	gnl\|CDD\|131585	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP013141.1\|WP_057919919.1\|4705532_4705967_-\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	6.7171e-45
NZ_CP013141.1\|WP_057916903.1\|4677439_4677874_-\|type-II-secretion-system-major-pseudopilin-GspG	gnl\|CDD\|377975	pfam08334, T2SSG, Type II secretion system (T2SS), protein G. The Type II secretion system, also called Secretion-dependent pathway (SDP), is responsible for the transport of proteins across the outer membrane first exported to the periplasm by the Sec or Tat translocon in Gram-negative (diderm) bacteria. The T2SG family includes proteins such as EpsG (P45773) in Vibrio cholera, XcpT also called PddA (Q00514) in Pseudomonas aeruginosa or PulG (P15746)in Klebsiella pneumoniae. The PulG is thought to be anchored in the inner membrane with its C-terminus directed towards the periplasme. Together with other members of the Type II secretion machinery, it is thought to assemble into a pilus-like structure that may function as a dynamic mechanism to push secreted proteins out of the cell. The polypeptide is organized into a long N-terminal alpha-helix followed by a loop region that separates it from a C-terminal anti-parallel beta-sheet.	2.69837e-35
NZ_CP013141.1\|WP_057916895.1\|4697396_4698479_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	6.99201e-108
NZ_CP013141.1\|WP_082638814.1\|4682073_4685874_-\|hypothetical-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	2.26502e-23
NZ_CP013141.1\|WP_057916897.1\|4694295_4695243_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	1.44792e-166
NZ_CP013141.1\|WP_057972522.1\|4688598_4692552_-\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|235394	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional.	0
NZ_CP013141.1\|WP_057972523.1\|4692817_4693702_-\|DsbC-family-protein	gnl\|CDD\|239318	cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.	2.76468e-58
NZ_CP013141.1\|WP_057916894.1\|4698679_4700149_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP013141.1\|WP_144436620.1\|4685870_4688381_-\|RHS-repeat-protein	gnl\|CDD\|368509	pfam05593, RHS_repeat, RHS Repeat. RHS proteins contain extended repeat regions. These repeats often appear to be involved in ligand binding. Note that this model may not find all the repeats in a protein and that it covers two RHS repeats. The 3D structure of an RHS-repeat-containing protein (the B and C components of an ABC toxin complex) has been determined. The RHS repeats form an extended strip of beta-sheet that spirals around to form a hollow shell, encapsulating the variable C-terminal domain.	8.84537e-05
NZ_CP013141.1\|WP_082638815.1\|4704631_4705513_+\|DUF2785-domain-containing-protein	gnl\|CDD\|371322	pfam10978, DUF2785, Protein of unknown function (DUF2785). Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.	5.05242e-41
NZ_CP013141.1\|WP_082638813.1\|4676368_4676857_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	2.99682e-06
NZ_CP013141.1\|WP_057972526.1\|4700538_4700964_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|377329	pfam04364, DNA_pol3_chi, DNA polymerase III chi subunit, HolC. The DNA polymerase III holoenzyme (EC:2.7.7.7) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi.	2.01719e-36
NZ_CP013141.1\|WP_082639048.1\|4676853_4677288_-\|type-II-transport-protein-GspH	gnl\|CDD\|227305	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	1.65059e-14
NZ_CP013141.1\|WP_057972524.1\|4696299_4697400_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	3.57155e-100
NZ_CP013141.1\|WP_057972520.1\|4678104_4679322_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	1.20535e-125
NZ_CP013141.1\|WP_057973276.1\|4695302_4695776_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.28381e-18
NZ_CP013141.1\|WP_057972527.1\|4701096_4704147_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0

>NZ_CP013141.1|WP_057972523.1|4692817_4693702_-|DsbC-family-protein
MMKRIIFAVLGAISLSACAQAPQGAAAKSDPAAPAKTAAAAKGAAPEVKAGSADALAVEAIRQLNPNVSIDKVGPSPVPGFREALAQGQVVYVSDDGRYLFLPGSGGALFDTQAKKNLSESSLAGMRKDLLKTIPASERIVFAPANPKHTVTIFTDVECGYCRKLHSEIAEYNRQGIAVEYLAFPRMGIGSEDYKKMVSVWCAADRRKALTDAKSEQSIPNKDCKNTVTMQYNVGQRAGLTGTPMILTSEGIQLGGYVPPAQLREALDKIAADAKPAASGAKPTAAVAVPTGGR
>NZ_CP013141.1|WP_057972522.1|4688598_4692552_-|phosphoribosylformylglycinamidine-synthase
MIVLEGHSALSSFRRERLQARLSALHPSIRLLDAWPVYWVEPDTGATPDDATLRRILQAEPHEAARTDAAVSRYVTPRLGTLSPWASKATELLRGAGQPVKRVERGTRYDLEGWPSDAATQGALAKVLHDPMTQSLLEARDDAAALFAVPARGELERIPLDELESANGRLGLALADDEIGYLRERYAALGRTPSDVELMMFAQANSEHCRHKIFNASWTLEGREQPQSLFKMIKHTHAHTPENTLSAYSDNAAVVEGYPARRFRPQPGSQAYAAEAQIPSAFCIKVETHNHPTAIAPFPGASTGNGGEIRDEGATGRGGRPKAGLCGFSVSHLRIPTLPQPWEGERALNPRMAPALEIMLDGPLGAAAFNNEFGRPNLVGYFRSFELSEGQAGNASLARAYDKPIMLAGGLGAIDRVQVAKLGLKPGHAVIVLGGPAMLIGLGGGAASSVASGDSAEALDFASVQRDNPEMERRCQEVIDRCVALGDANPIDSAHDVGAGGLSNAIPELLHDSSLGGVIDLAKVPSDDPSLSPMQLWCNESQERYVLGLPADRVADFAAICERERCPFAVVGYATAEERLVVGYGATVETVYGENDSATAYPIDLPMDLLFGKPPKMHRDTRYPADAPWPALQWGGLDLRDAGLRVLAHPTVAAKNFLITIGDRTVGGLVARDQMIGPWQLPLADCAITLSDFDGHVGEAMAIGERTPLALLDAAAAARMAVGEAITNLCAAPVESLNRIKLSANWMAAASHPGEDALLFDAVKAVGLELCPELELSIPVGKDSLSMQAQWGSGENASKSVSPVSLIVSAFAPVVDVRQQLTPLLSRDTDSELWLIGLGAGKQRLGGSVLAQCHPEAGSEGGLPAFAGLPGEGTRHETGVPDLDSPQRLRDFFELIRDAREAGLLLAYHDRSDGGAFAALSEMAFCSRLGLDISLDGWGEDPFRTLFNEELGAIVQIAAEDRAEFADLVARHGLIDCAQRIAKPTTAAAVRVKEDGKVLVEWRWDELFDAWWSTSHALQKLRDNPECADEERAIARDFNAPGLKPKLSFDAAEDVAAPFINTGARPKVAILREQGVNGQIEMAAAFDSAGFEAFDVHMSDLISGRFRLEDFKGFAACGGFSYGDVLGAGRGWATSILERSALRDAFAAFFAREDSFSLGVCNGCQMLAQLKPIVPGAEHWPVFLRNRSEQFEARLGLLEVAESPSLFFRGMAGSRIPVAVAHGEGQASFASNLDQSAANVSLRYIDGDGRVADRYPLNPNGSPDGIAGLTSNDGRATILMPHPERTLRNANFSWSPRDWSGDSPWLRMFRNARVWVG
>NZ_CP013141.1|WP_144436620.1|4685870_4688381_-|RHS-repeat-protein
MRYLCGVLLAVVSCTAGAQKAPWEEYDKFVKSAQTIKTEGPGLLGDSVNLYTGATSFAATDVSLPGNSDLAVAIGRRFSAQSDARNRPFADWDWDVPYISGTFSRSSGWVIGDIAPDATPNRCSSPTSPETARPPIVKVASSTPGRSAPVQAWEYWSGYRMSVGGGDQELLIATAQTKPRPTDGKTYPWVTKQFWHLSCLPNLQSAHPGEGFLALAPDGTRYRFDWMVARQTDDLVKPFAGDGTILSRPVPRDEIRLYATRVEDRFGNWVAYNWSGNQLASITSSDGRQLSLTWESANGYDRVAKVAVNTTPVREWNYGYSAYSRLTSVTLPDGGQWKLNLLEMWGAPFYEQAEETMADGRRVPVQDKALSCSWMRVLRPLTRTATITHPSGATGEFIFQTIRHGRNSVRSECLPPPNLGGTLPDNPEPEDTLTSMVPARFDVLAIRTKRITGAGLPADTWNYDYTTPVGSWEDGCANCATTKTTTVTGPGGERTVNTYGVVFNANEGQLLKTEVFAGNALLRTSATEYLSNTAAEQQNVFAHRMGISPQVRLDSFSSESLRPVTESSTQQDGATFANKVNGFDVFAQPTNRTEVSSLGYSRTNTTEYYADLSKWVIGQVQKETNVNTGAVVSQADYDAATALPVRTYAYGKLQQTLEYYPDGTLSALKDGRNLTTSLSNWKRGMPQTIRFQDGAKKDVVVDNNGWVASVTDENGHVMNYSYDLMGRMTRIVYPTGDDTVWNDTALSFEQVAGVEYGLPAGHWRHVVSTGNGKKTTYFDALWRPVIEQEEDIADPQSTARWTMKCYDPEGRVTFSSYPRNPFTEGAPAFDCAGLTP
>NZ_CP013141.1|WP_082638814.1|4682073_4685874_-|hypothetical-protein
MSRREKGLGETKIVFGGDMTQDANFVTRSIRRGSLSRRLGTWSAAAALWLLMSFAAQAAGGTPAITISVNPIPGYEEPATLEVYAEGSGDAGIEWIALYQNGVQLIKVNDYIVDKTVTGLPAGTYYFSATAKDFGGRTNTVTKQVVIQPANQAPTVSLSLPGGTQYLTPANITLASNPSDSDGSISKVEYFANGVWVAASMSPPFTAQWNNVSPGTYTLVASAYDNKNQHGNSAPVSVVVSTAEAEFAGQIVPVSMRPGAVYPVRVQMKNTGTSVWRNGDGYRLGSSNPGDNYTWGMSRAGLVGDVGPGQTAVFDFNVTAPASDGDYNFQWRMLKEGVQWFGSASANQVVQVRTPPALASEFVSQSVPTSMVPGATYSVSVQMRNVGTAIWRSSESIRLGSFNPNDNGTWNIARIPVAGDIAPGQVATFGFTVKAPIASGSYNFQWRMLKEGVAWFGDPSANQVVQVQAPPASSLLGVRTRYDVLGRVVSVKQDSELGVLTSTTEYLGGLQTAVTNPRGNVTLTAFHAFGAPSYDAPVVISSPEGVYTEIARDVFGKPTSLRRRNADQSLSLYRYLVYDANQRLCKSVEPETGATVTAYDDAGNPAWSAAGLSLPSTSNCDFTEAYSSGRRVDRSYDNRNRLEGLTFPDGRGNQSWLYTPDGLPREVTTSNEGVGQGVVVNTYGYNKRRLLSAESMSQPGSSTWTSTNGFDGNGNRSRYTTPDGLQVNYANNALGQPTAVSTAWGTHASGISYYPNGAIKQFTYGNGIVHSMTQNARQLPVLSVDAGVIDFSTGYDSNGNVTSISDRLRGDHYSRWMGYDNLDRLTSAGSCSFKGDCWHRFTYDVLDNIKTWSLGGVKNHRYLYNGNNHLTNIQSVNADGSTPTVIGLGYDVQGNLDNKNGQDYDFDLGNRLRKVTGKEIYRYDAYGRRVTATGRPDTTFSQSFYNQAGQLLLREEHHSAEAESDSHPELNIPHIYLGSSLLATLEWNRAAGNGQIKYQHTDALGSPVVVTNTAGQVLERTEWEPFGAAIREPGQPAYNGVGYTGHVMDGATGLTYMQQRYYDPAIGRFLSVDSVQVDSNSGDNFNRYSYVNNNPYKFIDPDGRQELEFLALRGVLAFAAADAVTPEPSDAAAPLKLAGYGAAIAGTAIGGAIVWAANEAMDAPADSGAGNTNPYNGPVDSPVVVVDSDGNAIPVEQGEQLKGSPDGRYQQVLGQDGKPTGTRVDKGGHRGQSDPKAQGPHGHRPGVTDETGNPHLPLNPPRGSPN
>NZ_CP013141.1|WP_144436619.1|4681843_4682065_-|hypothetical-protein
MGKFTYDDVVRIVETADESLRPGSVGWVVGVFEERPVGSYFSQFPPGVVYTVEYEDGEAKEVHEDFLEAGRLP
>NZ_CP013141.1|WP_057919920.1|4679452_4681129_-|type-II-secretion-system-ATPase-GspE
MRIVEALLAKGRLKEPDLARARRLQEETGGSLLALLARLGLVSERDHAETVAAALELPLVSIKDAPELPPEGVALTPKFMKQFAVCPVAEGEHHVDVLMADPQDIYQLDALRLATQREVRPYVALRSEVGDLVERWYGQGRSAMGAIVETAEGEGAGDLDDVEHLRDLASEAPVIRLVNLVIQRAVELRASDIHIEPFENRLKVRYRVDGVLAEGESPPANLTAAVISRIKIMAKLNIAERRLPQDGRIMLRVQGKELDLRVSTVPTAHGESVVMRLLDRETVVFDFYKLGFTDEFLPQFQKVLDQPHGIMLVTGPTGSGKTTTLYTALSKLNTSDVKIITVEDPVEYQIEGINQIQAKPQIGLDFSHALRSIVRQDPDIIMIGEMRDLETCRIAIQSALTGHLVLSTLHTNNAAGGITRLLDMGVEDYLLTSTINGILAQRLVRRLEPTHAEKYLASPEEIDKFNLRRYQPEGEIFLFRPRGSALAPSGYHGRTTIMEFLVMNDELRRAVMRHAGMGEIEQIARDSAGMRTMYEDGIVKALAGQTTIEEVLRVTEDA
>NZ_CP013141.1|WP_057972520.1|4678104_4679322_-|type-II-secretion-system-F-family-protein
MPLYHYKALNARGELLDGQMEAASSTEVVQRLQEQGHLPVEAKLASEAGASSSWRALFKPKPFTGARLVQFTQQLSTLLGAGQPLDRALTILLDLPEDDTAKSTVADIRDAVRGGTSLSVALERQHGTFSRLYINMVRAGEAGGNLHETLSRLDDYLERSRVLQGRVINALIYPAILMAMVGLSLMFLLGYVVPQFGAMYESLDAELPMFTQVVLWLGLFVRDWWIVLIAIPAVGFLWFDRKRRDPAFREALDAWLLKRKFVGPLIAKIETARLARTLGTLVRNGVPLMTAIGIGRNVLNNRILAADVDAAGEDVKNGVALSTALGKGKRFPRLALQMIQVGEESGALDAMLMKTAETFEQDTGMALDRMLAALVPVVTVVLAGVVATVVMAVLLPLYDLTNAIG
>NZ_CP013141.1|WP_057916903.1|4677439_4677874_-|type-II-secretion-system-major-pseudopilin-GspG
MRNPRSITRSPSPAGQRGMSLIEIIIVIVLIGAVLAFVGNRVLGGKDRGDYNLAKGQVQTLAGKIDSFQMDTGRLPGSLEELVKQPADANGWLGPYAKETELKDPWGHAIEYRQPGESGPYDLVSYGKDGKAGGSSVDGDIKNN
>NZ_CP013141.1|WP_082639048.1|4676853_4677288_-|type-II-transport-protein-GspH
MSLLEMLLVIALIAAIGVLTVGMMSGGMSGMQLRSASKEIASQLRYTRSQAISTGRSQKFTIDPAARTWTAPNGRRGDIPKAVGVTFTGAREVQPRRGEGAIMFFADGASTGGRIKLNVKQAAWNVDVAWLTGEVKLKRGEAPR
>NZ_CP013141.1|WP_082638813.1|4676368_4676857_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MSARARPAASAGRLRRLGALRRAPSSRERGYTLLEVIVAFALLAMALTLLLGTLSGATRQVRWSSDAGRAALYAQSLMDQVGVGQPLKPGQRSGEFENGRYRWTLGVAQWRDPTPASSQPVDPNALRLFEVQLAVEWGEGGGGRRLLLRTLRSAAASNEVQF
>NZ_CP013141.1|WP_057916897.1|4694295_4695243_-|site-specific-tyrosine-recombinase-XerD
MSASTPAERRSQAMALPPLGDADDAAIKSFLDTIWAESGLAQQTLDSYRRDLEGLARWRDGSGIANADRSALFDYLAWRTREGYSPRSNARLLSALRAFHAFLLRRGVRSDDPTALLAPPKLPRSLPKALAESQIEALLAAPAVDEPLGLRDRAMLELMYASGLRVSELVNLPSTAVNLRQGVLRVTGKGSKERLVPLGEEAQHWLERYLAQSRPQLAGKRALAPLFLAASGEAPSRQEFWHLVKRYAAVAGIDPAKISPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVAREQLKRLHAQHHPRG
>NZ_CP013141.1|WP_057973276.1|4695302_4695776_+|RDD-family-protein
MSAADPAPAKPAALVGWRLFALFYDFWPVTALWLVASAAFTIAYTLSGHGQRENIPPFSALQWALWLVCWLIAGGYATLSWRRGGQTLGMRPWRLRVIGADGAAPEWRALAIRYAVGTVSLAALGLGFWWAWFDRDRLTWHDRASGTRILRVPKRPK
>NZ_CP013141.1|WP_057972524.1|4696299_4697400_-|LPS-export-ABC-transporter-permease-LptG
MKPFPKIHDVYVGKTVLGTVLLTWAVLLGLDFMLSLVGEFGDVGKGRYGLMQALAYMAMTVPRRAYALFPYAAVIGALMALGQLASTSELTVLRAVGLSRRRLSLAVAGALALLTLLMVVNGETLAPEGQRRADALKTAAKSNNQVVAQYSGVWAREGDVILSASQGQERSEDQDRWLELRDVSLYQFGQDGRLVSLALAKIAEHRPGGWLLRDVTRTTFLAKSAEQVHVAEERWESKLDSAALMSGSNRPRYLSAKALHKAIEDRERNRLDAAEFEAYYWGRWFYPLNVLTLCLAAIPFAFGSLRSGGMGKRLFIGIVFALLFWQLQTQFVELAKVFRFDFRLAYAAPTVVMLAVSAYLFKRRSG
>NZ_CP013141.1|WP_057916895.1|4697396_4698479_-|LPS-export-ABC-transporter-permease-LptF
MLKLDRYLTGEFAQAVFATLVVLLIVSVGGAFTDVLEDIAKGKVPAGLMLLQLGLVLIKWLPLILPLALMLGLMLGIGRLYRDSEMPVIASIGVGPRRLLKPLLMVVGPIVAVVAACSLWLGPWADRASREMINEASRSLVVAGLEPGAFTGLPNDNGVIYVGAMSNDGTRFERIFIYRNKPDRQDVTTSKTGHLTVRPNGDRYLTLEDGFEVEGPKDGGLNYRLMRYASNDVLLPASEDRYDPSLPEMMSTTQLFGDPRREAAAQLHYRIAPPLLALAFALLAVPLARSTPRQARYGSVLMGFLAYLIGNNFMMMGKGWIEDGKIPTFLGLWWLTLPLLAVAGWLYFRDGRVARRRVAR
>NZ_CP013141.1|WP_057916894.1|4698679_4700149_+|leucyl-aminopeptidase
MTLEFDLNRDALAAAQTDCVVVGAFADKTLTAAARTLDEVSGGRLTALLERGDISGKTGKTSLLHDLPGVTAPRVLVIGLGEAGKFGVAQYLKAVGDAARALKAGPVEHALLTLSEEPVTGRDAAWAIRQAAIAADHACYRYTATLGKKKDEPGLRKLSIRGDDATALAQGQAIAAGVAFARELGNLPPNICNPAYLAEQAQEFAGRFDNTSCEVLDREQMQALGMGSLLAVARGSANPPKLIVLKYDNGGDAKPYVLVGKGITFDTGGINLKVQGGIEEMKFDMCGAASVLGSFVSAVGMQLPINLVVIVPAVENMPDADAYRPSDVLTSMSGKTIEVGNTDAEGRLILCDALTYAQRFEPQALLDVATLTGACVVALGKFATGLMSKDDDLAAELTSAGEQVFDRAWRLPLWDEYQTQLESTFADVYNIGGRWAGAITAGCFLSRFTEGQRWAHLDIAGVSNEEGKRGLATGRPVGLLSQWLLERAA
>NZ_CP013141.1|WP_082639049.1|4700211_4700529_+|hypothetical-protein
MSPYAQAGFTPVDWLLLALGLFWIFMWLHGDQQEFGHRRSPWMNIGIVVLAMLFVPIYLARTRPAGRKLKAVGAFFLLLLGWFALNVGGALLGYFVFGGSAAYTG
>NZ_CP013141.1|WP_057972526.1|4700538_4700964_+|DNA-polymerase-III-subunit-chi
MARADFYLIQTPRFKEQPLRLVCELARKAHDAGLPTLILARNAEQAEALDDMLWDMGEDAYIPHQIAGADLDEEEADVLIAAPEVDAPLRPLVINLRDTPVQDGFDRVLEVVPADDSARGPLRERWKQYQARGLTLNKHDM
>NZ_CP013141.1|WP_057972527.1|4701096_4704147_+|valine--tRNA-ligase
MSLASSYDPKQFEARLYEQWESSGVFQPRGEGQSYTILLPPPNVTGTLHMGHAFQHTLQDALIRYHRMRGYRTLWQMGTDHAGIATEMVVGRNLAIEGKGETRDSLGRDKFIEKVWDWKQQSGGTIERQMRRLGASGDWSRSVFTMDPMASDAITEAFVRLHEKGLIYRGQRLVNWDPVLKTAISDLEVANEEENGHMWSIRYPLADGASYEYVERDADGNETLREIRDYVVVATTRPETMLGDTAVMVHPEDERYIAIHGKFVDLPLTGRRIPVITDSYVDRAFGTGVVKVTPAHDFNDYAVGQRHSLLSINIFAPDASVWTLSGPTALKHVLSSADPDFTKIDRDACTPQQNQYADDFSLFAEQGMAAIVEKYIPATYRGLDRFEARKMIVADLDVAELLIEIKPHRLQVPRGDRSGQVIEPYLTDQWFVKMDALAQRGLELVESGEVKFVPANWINTYRHWLENIQDWTISRQLWWGHRIPAWTVRSGESDFTPIIGEIVARTEADAEVAARAKLLGSLGRDNYDKIKDRIELAQDPDVLETWFSSAMFPFSTQGWPNEDKMGELGFDIALPTSVLVTGFDIIFFWVARMIMMTDELVGRVPFRDVYITGLVRDKDGQKMSKSKGNILDPLDIIDGITAEALVAKRTTGLMKPQDAPKIEKATRKEFPDGIPAFGADALRFTMTALAGPGRDIKFDLGRAEGYKNFCNKLWNATRFVLMNTEDANFTGAPQPKTDAERWILAQLAKAAAEAETHFAAYRFDLLAQTLYEFAWNAFCDWFVELAKPALQGDDAAAADSTRHTLLYVLERLLSLLHPLIPFVTEELWQQVAPKLGIAETTVMLRPYPQAGDLSANYAQAEADVEWLKGMVSALRKVRSELNVSPQKNVGLLLAKGDAADRDRATRFDSQLRFLNRLESIEFVADANDAPPAASAVVGELTLLVPLEGLVDLGAERTRLDKEIKRVAGEIGKCQGKLASETFVQNAPAAVVEQERKRLVDWNVQLEGLTAQRTKLG
>NZ_CP013141.1|WP_082638815.1|4704631_4705513_+|DUF2785-domain-containing-protein
MRLVLLLSACLLAAPAFAGVCPPAGHTAASLQALKARQFALPDAAEKQALAAGLIGCLSASDPELRDGIAFEALSQWMRAGDFDANALRAMRDSLYATLGSEDGPGFGPPFAALVLSEVARTDRIKAWMTPQERAAMVERAAAYVESVRDYRGYIEGQGWRHGVAHGADWLMQLSLNPALERAQYERILAAIASQAVPGNGHAYVFGESERLARPLLFTAQRGLLSAEDWQAWFAALSAKVGKLDRADYAGWLGRRHDLTAFLSGLYVQADQSEDAAIKALKPAILAALKQAP
>NZ_CP013141.1|WP_057919919.1|4705532_4705967_-|ribosomal-protein-S18-alanine-N-acetyltransferase
MREDDLEVVHAIEIRAYEFPWTPGIFRDCLRADYPAWVLSEGERIIGYFLMSVAAGEAHVLNVCVAPEAHGHGYGRKLLRALVHIARGRGAERVFLEVRPSNSGAIALYHNEGFNEIGRRPRYYPARGGREDALVMAIELFPEE

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Crispr_ID: NZ_CP013141_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_16

4696048-4696282

Orphan

Consensus_repeat	Method
CGGCCCCGGCCCGGCGCAGCGCGCCGGGCGTTCATCGAAAGCGCGAGCCAATGGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013141_16

>merge|NZ_CP013141|16|4696048-4696282|PILER-CR
GCCCCGGCCCGGCGCAGCGCGCCGGGCGTTCATCGAAAGCGCGAGCCAATGGCGAAGCTCCGTGGAGAGAACGCATGGGCCGGGAGCTGCGGCCCCGGCCCGGCGCGGCGCGCCGGGCGTTCACACAGTCCACGCGGCAGTGCCGCGGCTTCGTTGCGACATTACGCGACCTGAAAGTTGCGGCCCCGGCCCGGCGCAGCGCGCCGGGCGTTCATCGAAAGCGCGAGCCAATGGC

>NZ_CP013141|16|4|4696048-4696282|PILER-CR
GCCCCGGCCCGGCGCAGCGCGCCGGGCGTTCATCGAAAGCGCGAGCCAATGGCGA	AGCTCCGTGGAGAGAACGCATGGGCCGGGAGCTGCG
GCCCCGGCCCGGCGCGGCGCGCCGGGCGTTCACACAGTCCACGCGGCAGTGCCGC	GGCTTCGTTGCGACATTACGCGACCTGAAAGTTGCGGCCCCGGCCCGGCGCAGCGCG
CCGGGCGTTCATCGAAAGCGCGAGCCAATGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057919920.1\|4679452_4681129_-\|type-II-secretion-system-ATPase-GspE	unknown	unknown	gnl\|CDD\|131585
NZ_CP013141.1\|WP_057919919.1\|4705532_4705967_-\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP013141.1\|WP_057916903.1\|4677439_4677874_-\|type-II-secretion-system-major-pseudopilin-GspG	unknown	unknown	gnl\|CDD\|377975
NZ_CP013141.1\|WP_057916895.1\|4697396_4698479_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200
NZ_CP013141.1\|WP_057972523.1\|4692817_4693702_-\|DsbC-family-protein	unknown	unknown	gnl\|CDD\|239318
NZ_CP013141.1\|WP_082638816.1\|4706219_4707461_-\|O-succinylhomoserine-(thiol)-lyase	unknown	unknown	gnl\|CDD\|181554
NZ_CP013141.1\|WP_057972524.1\|4696299_4697400_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|275201
NZ_CP013141.1\|WP_057916897.1\|4694295_4695243_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP013141.1\|WP_057972522.1\|4688598_4692552_-\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|235394
NZ_CP013141.1\|WP_082638814.1\|4682073_4685874_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP013141.1\|WP_057916894.1\|4698679_4700149_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP013141.1\|WP_144436620.1\|4685870_4688381_-\|RHS-repeat-protein	unknown	unknown	gnl\|CDD\|368509
NZ_CP013141.1\|WP_057973277.1\|4707457_4708525_-\|homoserine-O-succinyltransferase	unknown	unknown	gnl\|CDD\|181553
NZ_CP013141.1\|WP_057972526.1\|4700538_4700964_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|377329
NZ_CP013141.1\|WP_082638815.1\|4704631_4705513_+\|DUF2785-domain-containing-protein	unknown	unknown	gnl\|CDD\|371322
NZ_CP013141.1\|WP_057972527.1\|4701096_4704147_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP013141.1\|WP_057972520.1\|4678104_4679322_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP013141.1\|WP_082639049.1\|4700211_4700529_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057973276.1\|4695302_4695776_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP013141.1\|WP_144436619.1\|4681843_4682065_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057919920.1\|4679452_4681129_-\|type-II-secretion-system-ATPase-GspE	gnl\|CDD\|131585	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP013141.1\|WP_057919919.1\|4705532_4705967_-\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	6.7171e-45
NZ_CP013141.1\|WP_057916903.1\|4677439_4677874_-\|type-II-secretion-system-major-pseudopilin-GspG	gnl\|CDD\|377975	pfam08334, T2SSG, Type II secretion system (T2SS), protein G. The Type II secretion system, also called Secretion-dependent pathway (SDP), is responsible for the transport of proteins across the outer membrane first exported to the periplasm by the Sec or Tat translocon in Gram-negative (diderm) bacteria. The T2SG family includes proteins such as EpsG (P45773) in Vibrio cholera, XcpT also called PddA (Q00514) in Pseudomonas aeruginosa or PulG (P15746)in Klebsiella pneumoniae. The PulG is thought to be anchored in the inner membrane with its C-terminus directed towards the periplasme. Together with other members of the Type II secretion machinery, it is thought to assemble into a pilus-like structure that may function as a dynamic mechanism to push secreted proteins out of the cell. The polypeptide is organized into a long N-terminal alpha-helix followed by a loop region that separates it from a C-terminal anti-parallel beta-sheet.	2.69837e-35
NZ_CP013141.1\|WP_057916895.1\|4697396_4698479_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	6.99201e-108
NZ_CP013141.1\|WP_057972523.1\|4692817_4693702_-\|DsbC-family-protein	gnl\|CDD\|239318	cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.	2.76468e-58
NZ_CP013141.1\|WP_082638816.1\|4706219_4707461_-\|O-succinylhomoserine-(thiol)-lyase	gnl\|CDD\|181554	PRK08776, PRK08776, O-succinylhomoserine (thiol)-lyase.	0
NZ_CP013141.1\|WP_057972524.1\|4696299_4697400_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	3.57155e-100
NZ_CP013141.1\|WP_057916897.1\|4694295_4695243_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	1.44792e-166
NZ_CP013141.1\|WP_057972522.1\|4688598_4692552_-\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|235394	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional.	0
NZ_CP013141.1\|WP_082638814.1\|4682073_4685874_-\|hypothetical-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	2.26502e-23
NZ_CP013141.1\|WP_057916894.1\|4698679_4700149_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP013141.1\|WP_144436620.1\|4685870_4688381_-\|RHS-repeat-protein	gnl\|CDD\|368509	pfam05593, RHS_repeat, RHS Repeat. RHS proteins contain extended repeat regions. These repeats often appear to be involved in ligand binding. Note that this model may not find all the repeats in a protein and that it covers two RHS repeats. The 3D structure of an RHS-repeat-containing protein (the B and C components of an ABC toxin complex) has been determined. The RHS repeats form an extended strip of beta-sheet that spirals around to form a hollow shell, encapsulating the variable C-terminal domain.	8.84537e-05
NZ_CP013141.1\|WP_057973277.1\|4707457_4708525_-\|homoserine-O-succinyltransferase	gnl\|CDD\|181553	PRK08775, PRK08775, homoserine O-succinyltransferase.	4.34807e-139
NZ_CP013141.1\|WP_057972526.1\|4700538_4700964_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|377329	pfam04364, DNA_pol3_chi, DNA polymerase III chi subunit, HolC. The DNA polymerase III holoenzyme (EC:2.7.7.7) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi.	2.01719e-36
NZ_CP013141.1\|WP_082638815.1\|4704631_4705513_+\|DUF2785-domain-containing-protein	gnl\|CDD\|371322	pfam10978, DUF2785, Protein of unknown function (DUF2785). Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.	5.05242e-41
NZ_CP013141.1\|WP_057972520.1\|4678104_4679322_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	1.20535e-125
NZ_CP013141.1\|WP_057973276.1\|4695302_4695776_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.28381e-18
NZ_CP013141.1\|WP_057972527.1\|4701096_4704147_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0

>NZ_CP013141.1|WP_057973276.1|4695302_4695776_+|RDD-family-protein
MSAADPAPAKPAALVGWRLFALFYDFWPVTALWLVASAAFTIAYTLSGHGQRENIPPFSALQWALWLVCWLIAGGYATLSWRRGGQTLGMRPWRLRVIGADGAAPEWRALAIRYAVGTVSLAALGLGFWWAWFDRDRLTWHDRASGTRILRVPKRPK
>NZ_CP013141.1|WP_057916897.1|4694295_4695243_-|site-specific-tyrosine-recombinase-XerD
MSASTPAERRSQAMALPPLGDADDAAIKSFLDTIWAESGLAQQTLDSYRRDLEGLARWRDGSGIANADRSALFDYLAWRTREGYSPRSNARLLSALRAFHAFLLRRGVRSDDPTALLAPPKLPRSLPKALAESQIEALLAAPAVDEPLGLRDRAMLELMYASGLRVSELVNLPSTAVNLRQGVLRVTGKGSKERLVPLGEEAQHWLERYLAQSRPQLAGKRALAPLFLAASGEAPSRQEFWHLVKRYAAVAGIDPAKISPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVAREQLKRLHAQHHPRG
>NZ_CP013141.1|WP_057972523.1|4692817_4693702_-|DsbC-family-protein
MMKRIIFAVLGAISLSACAQAPQGAAAKSDPAAPAKTAAAAKGAAPEVKAGSADALAVEAIRQLNPNVSIDKVGPSPVPGFREALAQGQVVYVSDDGRYLFLPGSGGALFDTQAKKNLSESSLAGMRKDLLKTIPASERIVFAPANPKHTVTIFTDVECGYCRKLHSEIAEYNRQGIAVEYLAFPRMGIGSEDYKKMVSVWCAADRRKALTDAKSEQSIPNKDCKNTVTMQYNVGQRAGLTGTPMILTSEGIQLGGYVPPAQLREALDKIAADAKPAASGAKPTAAVAVPTGGR
>NZ_CP013141.1|WP_057972522.1|4688598_4692552_-|phosphoribosylformylglycinamidine-synthase
MIVLEGHSALSSFRRERLQARLSALHPSIRLLDAWPVYWVEPDTGATPDDATLRRILQAEPHEAARTDAAVSRYVTPRLGTLSPWASKATELLRGAGQPVKRVERGTRYDLEGWPSDAATQGALAKVLHDPMTQSLLEARDDAAALFAVPARGELERIPLDELESANGRLGLALADDEIGYLRERYAALGRTPSDVELMMFAQANSEHCRHKIFNASWTLEGREQPQSLFKMIKHTHAHTPENTLSAYSDNAAVVEGYPARRFRPQPGSQAYAAEAQIPSAFCIKVETHNHPTAIAPFPGASTGNGGEIRDEGATGRGGRPKAGLCGFSVSHLRIPTLPQPWEGERALNPRMAPALEIMLDGPLGAAAFNNEFGRPNLVGYFRSFELSEGQAGNASLARAYDKPIMLAGGLGAIDRVQVAKLGLKPGHAVIVLGGPAMLIGLGGGAASSVASGDSAEALDFASVQRDNPEMERRCQEVIDRCVALGDANPIDSAHDVGAGGLSNAIPELLHDSSLGGVIDLAKVPSDDPSLSPMQLWCNESQERYVLGLPADRVADFAAICERERCPFAVVGYATAEERLVVGYGATVETVYGENDSATAYPIDLPMDLLFGKPPKMHRDTRYPADAPWPALQWGGLDLRDAGLRVLAHPTVAAKNFLITIGDRTVGGLVARDQMIGPWQLPLADCAITLSDFDGHVGEAMAIGERTPLALLDAAAAARMAVGEAITNLCAAPVESLNRIKLSANWMAAASHPGEDALLFDAVKAVGLELCPELELSIPVGKDSLSMQAQWGSGENASKSVSPVSLIVSAFAPVVDVRQQLTPLLSRDTDSELWLIGLGAGKQRLGGSVLAQCHPEAGSEGGLPAFAGLPGEGTRHETGVPDLDSPQRLRDFFELIRDAREAGLLLAYHDRSDGGAFAALSEMAFCSRLGLDISLDGWGEDPFRTLFNEELGAIVQIAAEDRAEFADLVARHGLIDCAQRIAKPTTAAAVRVKEDGKVLVEWRWDELFDAWWSTSHALQKLRDNPECADEERAIARDFNAPGLKPKLSFDAAEDVAAPFINTGARPKVAILREQGVNGQIEMAAAFDSAGFEAFDVHMSDLISGRFRLEDFKGFAACGGFSYGDVLGAGRGWATSILERSALRDAFAAFFAREDSFSLGVCNGCQMLAQLKPIVPGAEHWPVFLRNRSEQFEARLGLLEVAESPSLFFRGMAGSRIPVAVAHGEGQASFASNLDQSAANVSLRYIDGDGRVADRYPLNPNGSPDGIAGLTSNDGRATILMPHPERTLRNANFSWSPRDWSGDSPWLRMFRNARVWVG
>NZ_CP013141.1|WP_144436620.1|4685870_4688381_-|RHS-repeat-protein
MRYLCGVLLAVVSCTAGAQKAPWEEYDKFVKSAQTIKTEGPGLLGDSVNLYTGATSFAATDVSLPGNSDLAVAIGRRFSAQSDARNRPFADWDWDVPYISGTFSRSSGWVIGDIAPDATPNRCSSPTSPETARPPIVKVASSTPGRSAPVQAWEYWSGYRMSVGGGDQELLIATAQTKPRPTDGKTYPWVTKQFWHLSCLPNLQSAHPGEGFLALAPDGTRYRFDWMVARQTDDLVKPFAGDGTILSRPVPRDEIRLYATRVEDRFGNWVAYNWSGNQLASITSSDGRQLSLTWESANGYDRVAKVAVNTTPVREWNYGYSAYSRLTSVTLPDGGQWKLNLLEMWGAPFYEQAEETMADGRRVPVQDKALSCSWMRVLRPLTRTATITHPSGATGEFIFQTIRHGRNSVRSECLPPPNLGGTLPDNPEPEDTLTSMVPARFDVLAIRTKRITGAGLPADTWNYDYTTPVGSWEDGCANCATTKTTTVTGPGGERTVNTYGVVFNANEGQLLKTEVFAGNALLRTSATEYLSNTAAEQQNVFAHRMGISPQVRLDSFSSESLRPVTESSTQQDGATFANKVNGFDVFAQPTNRTEVSSLGYSRTNTTEYYADLSKWVIGQVQKETNVNTGAVVSQADYDAATALPVRTYAYGKLQQTLEYYPDGTLSALKDGRNLTTSLSNWKRGMPQTIRFQDGAKKDVVVDNNGWVASVTDENGHVMNYSYDLMGRMTRIVYPTGDDTVWNDTALSFEQVAGVEYGLPAGHWRHVVSTGNGKKTTYFDALWRPVIEQEEDIADPQSTARWTMKCYDPEGRVTFSSYPRNPFTEGAPAFDCAGLTP
>NZ_CP013141.1|WP_082638814.1|4682073_4685874_-|hypothetical-protein
MSRREKGLGETKIVFGGDMTQDANFVTRSIRRGSLSRRLGTWSAAAALWLLMSFAAQAAGGTPAITISVNPIPGYEEPATLEVYAEGSGDAGIEWIALYQNGVQLIKVNDYIVDKTVTGLPAGTYYFSATAKDFGGRTNTVTKQVVIQPANQAPTVSLSLPGGTQYLTPANITLASNPSDSDGSISKVEYFANGVWVAASMSPPFTAQWNNVSPGTYTLVASAYDNKNQHGNSAPVSVVVSTAEAEFAGQIVPVSMRPGAVYPVRVQMKNTGTSVWRNGDGYRLGSSNPGDNYTWGMSRAGLVGDVGPGQTAVFDFNVTAPASDGDYNFQWRMLKEGVQWFGSASANQVVQVRTPPALASEFVSQSVPTSMVPGATYSVSVQMRNVGTAIWRSSESIRLGSFNPNDNGTWNIARIPVAGDIAPGQVATFGFTVKAPIASGSYNFQWRMLKEGVAWFGDPSANQVVQVQAPPASSLLGVRTRYDVLGRVVSVKQDSELGVLTSTTEYLGGLQTAVTNPRGNVTLTAFHAFGAPSYDAPVVISSPEGVYTEIARDVFGKPTSLRRRNADQSLSLYRYLVYDANQRLCKSVEPETGATVTAYDDAGNPAWSAAGLSLPSTSNCDFTEAYSSGRRVDRSYDNRNRLEGLTFPDGRGNQSWLYTPDGLPREVTTSNEGVGQGVVVNTYGYNKRRLLSAESMSQPGSSTWTSTNGFDGNGNRSRYTTPDGLQVNYANNALGQPTAVSTAWGTHASGISYYPNGAIKQFTYGNGIVHSMTQNARQLPVLSVDAGVIDFSTGYDSNGNVTSISDRLRGDHYSRWMGYDNLDRLTSAGSCSFKGDCWHRFTYDVLDNIKTWSLGGVKNHRYLYNGNNHLTNIQSVNADGSTPTVIGLGYDVQGNLDNKNGQDYDFDLGNRLRKVTGKEIYRYDAYGRRVTATGRPDTTFSQSFYNQAGQLLLREEHHSAEAESDSHPELNIPHIYLGSSLLATLEWNRAAGNGQIKYQHTDALGSPVVVTNTAGQVLERTEWEPFGAAIREPGQPAYNGVGYTGHVMDGATGLTYMQQRYYDPAIGRFLSVDSVQVDSNSGDNFNRYSYVNNNPYKFIDPDGRQELEFLALRGVLAFAAADAVTPEPSDAAAPLKLAGYGAAIAGTAIGGAIVWAANEAMDAPADSGAGNTNPYNGPVDSPVVVVDSDGNAIPVEQGEQLKGSPDGRYQQVLGQDGKPTGTRVDKGGHRGQSDPKAQGPHGHRPGVTDETGNPHLPLNPPRGSPN
>NZ_CP013141.1|WP_144436619.1|4681843_4682065_-|hypothetical-protein
MGKFTYDDVVRIVETADESLRPGSVGWVVGVFEERPVGSYFSQFPPGVVYTVEYEDGEAKEVHEDFLEAGRLP
>NZ_CP013141.1|WP_057919920.1|4679452_4681129_-|type-II-secretion-system-ATPase-GspE
MRIVEALLAKGRLKEPDLARARRLQEETGGSLLALLARLGLVSERDHAETVAAALELPLVSIKDAPELPPEGVALTPKFMKQFAVCPVAEGEHHVDVLMADPQDIYQLDALRLATQREVRPYVALRSEVGDLVERWYGQGRSAMGAIVETAEGEGAGDLDDVEHLRDLASEAPVIRLVNLVIQRAVELRASDIHIEPFENRLKVRYRVDGVLAEGESPPANLTAAVISRIKIMAKLNIAERRLPQDGRIMLRVQGKELDLRVSTVPTAHGESVVMRLLDRETVVFDFYKLGFTDEFLPQFQKVLDQPHGIMLVTGPTGSGKTTTLYTALSKLNTSDVKIITVEDPVEYQIEGINQIQAKPQIGLDFSHALRSIVRQDPDIIMIGEMRDLETCRIAIQSALTGHLVLSTLHTNNAAGGITRLLDMGVEDYLLTSTINGILAQRLVRRLEPTHAEKYLASPEEIDKFNLRRYQPEGEIFLFRPRGSALAPSGYHGRTTIMEFLVMNDELRRAVMRHAGMGEIEQIARDSAGMRTMYEDGIVKALAGQTTIEEVLRVTEDA
>NZ_CP013141.1|WP_057972520.1|4678104_4679322_-|type-II-secretion-system-F-family-protein
MPLYHYKALNARGELLDGQMEAASSTEVVQRLQEQGHLPVEAKLASEAGASSSWRALFKPKPFTGARLVQFTQQLSTLLGAGQPLDRALTILLDLPEDDTAKSTVADIRDAVRGGTSLSVALERQHGTFSRLYINMVRAGEAGGNLHETLSRLDDYLERSRVLQGRVINALIYPAILMAMVGLSLMFLLGYVVPQFGAMYESLDAELPMFTQVVLWLGLFVRDWWIVLIAIPAVGFLWFDRKRRDPAFREALDAWLLKRKFVGPLIAKIETARLARTLGTLVRNGVPLMTAIGIGRNVLNNRILAADVDAAGEDVKNGVALSTALGKGKRFPRLALQMIQVGEESGALDAMLMKTAETFEQDTGMALDRMLAALVPVVTVVLAGVVATVVMAVLLPLYDLTNAIG
>NZ_CP013141.1|WP_057916903.1|4677439_4677874_-|type-II-secretion-system-major-pseudopilin-GspG
MRNPRSITRSPSPAGQRGMSLIEIIIVIVLIGAVLAFVGNRVLGGKDRGDYNLAKGQVQTLAGKIDSFQMDTGRLPGSLEELVKQPADANGWLGPYAKETELKDPWGHAIEYRQPGESGPYDLVSYGKDGKAGGSSVDGDIKNN
>NZ_CP013141.1|WP_057972524.1|4696299_4697400_-|LPS-export-ABC-transporter-permease-LptG
MKPFPKIHDVYVGKTVLGTVLLTWAVLLGLDFMLSLVGEFGDVGKGRYGLMQALAYMAMTVPRRAYALFPYAAVIGALMALGQLASTSELTVLRAVGLSRRRLSLAVAGALALLTLLMVVNGETLAPEGQRRADALKTAAKSNNQVVAQYSGVWAREGDVILSASQGQERSEDQDRWLELRDVSLYQFGQDGRLVSLALAKIAEHRPGGWLLRDVTRTTFLAKSAEQVHVAEERWESKLDSAALMSGSNRPRYLSAKALHKAIEDRERNRLDAAEFEAYYWGRWFYPLNVLTLCLAAIPFAFGSLRSGGMGKRLFIGIVFALLFWQLQTQFVELAKVFRFDFRLAYAAPTVVMLAVSAYLFKRRSG
>NZ_CP013141.1|WP_057916895.1|4697396_4698479_-|LPS-export-ABC-transporter-permease-LptF
MLKLDRYLTGEFAQAVFATLVVLLIVSVGGAFTDVLEDIAKGKVPAGLMLLQLGLVLIKWLPLILPLALMLGLMLGIGRLYRDSEMPVIASIGVGPRRLLKPLLMVVGPIVAVVAACSLWLGPWADRASREMINEASRSLVVAGLEPGAFTGLPNDNGVIYVGAMSNDGTRFERIFIYRNKPDRQDVTTSKTGHLTVRPNGDRYLTLEDGFEVEGPKDGGLNYRLMRYASNDVLLPASEDRYDPSLPEMMSTTQLFGDPRREAAAQLHYRIAPPLLALAFALLAVPLARSTPRQARYGSVLMGFLAYLIGNNFMMMGKGWIEDGKIPTFLGLWWLTLPLLAVAGWLYFRDGRVARRRVAR
>NZ_CP013141.1|WP_057916894.1|4698679_4700149_+|leucyl-aminopeptidase
MTLEFDLNRDALAAAQTDCVVVGAFADKTLTAAARTLDEVSGGRLTALLERGDISGKTGKTSLLHDLPGVTAPRVLVIGLGEAGKFGVAQYLKAVGDAARALKAGPVEHALLTLSEEPVTGRDAAWAIRQAAIAADHACYRYTATLGKKKDEPGLRKLSIRGDDATALAQGQAIAAGVAFARELGNLPPNICNPAYLAEQAQEFAGRFDNTSCEVLDREQMQALGMGSLLAVARGSANPPKLIVLKYDNGGDAKPYVLVGKGITFDTGGINLKVQGGIEEMKFDMCGAASVLGSFVSAVGMQLPINLVVIVPAVENMPDADAYRPSDVLTSMSGKTIEVGNTDAEGRLILCDALTYAQRFEPQALLDVATLTGACVVALGKFATGLMSKDDDLAAELTSAGEQVFDRAWRLPLWDEYQTQLESTFADVYNIGGRWAGAITAGCFLSRFTEGQRWAHLDIAGVSNEEGKRGLATGRPVGLLSQWLLERAA
>NZ_CP013141.1|WP_082639049.1|4700211_4700529_+|hypothetical-protein
MSPYAQAGFTPVDWLLLALGLFWIFMWLHGDQQEFGHRRSPWMNIGIVVLAMLFVPIYLARTRPAGRKLKAVGAFFLLLLGWFALNVGGALLGYFVFGGSAAYTG
>NZ_CP013141.1|WP_057972526.1|4700538_4700964_+|DNA-polymerase-III-subunit-chi
MARADFYLIQTPRFKEQPLRLVCELARKAHDAGLPTLILARNAEQAEALDDMLWDMGEDAYIPHQIAGADLDEEEADVLIAAPEVDAPLRPLVINLRDTPVQDGFDRVLEVVPADDSARGPLRERWKQYQARGLTLNKHDM
>NZ_CP013141.1|WP_057972527.1|4701096_4704147_+|valine--tRNA-ligase
MSLASSYDPKQFEARLYEQWESSGVFQPRGEGQSYTILLPPPNVTGTLHMGHAFQHTLQDALIRYHRMRGYRTLWQMGTDHAGIATEMVVGRNLAIEGKGETRDSLGRDKFIEKVWDWKQQSGGTIERQMRRLGASGDWSRSVFTMDPMASDAITEAFVRLHEKGLIYRGQRLVNWDPVLKTAISDLEVANEEENGHMWSIRYPLADGASYEYVERDADGNETLREIRDYVVVATTRPETMLGDTAVMVHPEDERYIAIHGKFVDLPLTGRRIPVITDSYVDRAFGTGVVKVTPAHDFNDYAVGQRHSLLSINIFAPDASVWTLSGPTALKHVLSSADPDFTKIDRDACTPQQNQYADDFSLFAEQGMAAIVEKYIPATYRGLDRFEARKMIVADLDVAELLIEIKPHRLQVPRGDRSGQVIEPYLTDQWFVKMDALAQRGLELVESGEVKFVPANWINTYRHWLENIQDWTISRQLWWGHRIPAWTVRSGESDFTPIIGEIVARTEADAEVAARAKLLGSLGRDNYDKIKDRIELAQDPDVLETWFSSAMFPFSTQGWPNEDKMGELGFDIALPTSVLVTGFDIIFFWVARMIMMTDELVGRVPFRDVYITGLVRDKDGQKMSKSKGNILDPLDIIDGITAEALVAKRTTGLMKPQDAPKIEKATRKEFPDGIPAFGADALRFTMTALAGPGRDIKFDLGRAEGYKNFCNKLWNATRFVLMNTEDANFTGAPQPKTDAERWILAQLAKAAAEAETHFAAYRFDLLAQTLYEFAWNAFCDWFVELAKPALQGDDAAAADSTRHTLLYVLERLLSLLHPLIPFVTEELWQQVAPKLGIAETTVMLRPYPQAGDLSANYAQAEADVEWLKGMVSALRKVRSELNVSPQKNVGLLLAKGDAADRDRATRFDSQLRFLNRLESIEFVADANDAPPAASAVVGELTLLVPLEGLVDLGAERTRLDKEIKRVAGEIGKCQGKLASETFVQNAPAAVVEQERKRLVDWNVQLEGLTAQRTKLG
>NZ_CP013141.1|WP_082638815.1|4704631_4705513_+|DUF2785-domain-containing-protein
MRLVLLLSACLLAAPAFAGVCPPAGHTAASLQALKARQFALPDAAEKQALAAGLIGCLSASDPELRDGIAFEALSQWMRAGDFDANALRAMRDSLYATLGSEDGPGFGPPFAALVLSEVARTDRIKAWMTPQERAAMVERAAAYVESVRDYRGYIEGQGWRHGVAHGADWLMQLSLNPALERAQYERILAAIASQAVPGNGHAYVFGESERLARPLLFTAQRGLLSAEDWQAWFAALSAKVGKLDRADYAGWLGRRHDLTAFLSGLYVQADQSEDAAIKALKPAILAALKQAP
>NZ_CP013141.1|WP_057919919.1|4705532_4705967_-|ribosomal-protein-S18-alanine-N-acetyltransferase
MREDDLEVVHAIEIRAYEFPWTPGIFRDCLRADYPAWVLSEGERIIGYFLMSVAAGEAHVLNVCVAPEAHGHGYGRKLLRALVHIARGRGAERVFLEVRPSNSGAIALYHNEGFNEIGRRPRYYPARGGREDALVMAIELFPEE
>NZ_CP013141.1|WP_082638816.1|4706219_4707461_-|O-succinylhomoserine-(thiol)-lyase
MSTQNNGAAPVTTTPSTTSTRSTCTAAVRAGIDRDTAYGAVTPPIVLSSNFSFAGFNDKRQYDYTRSGNPTRDLLGEALAELEGGAGGVITSTGMSAITLVLHAFLKPGDRIVVPHDGYGGSWRLFNALAAKGAFELITADLTDPRSLTEALATKPAVVWIETPSNPLLRITDLRFVIEAAHAQGALTVVDNTFLSPALQRPIAFGADLVVHSTTKYINGHSDVVGGAVVAKSAEHHQQLTWWANALGLTGSPFDAFLTLRGLRTLDARLRVHQENTQAIATLLDNHPAVRVVHYPGLESHPGHALAARQQKGFGAMLSVEIEGGEDAVRAFVEGLTCFTLAESLGGVESLIAHPATMTHAAMSLEARTAAGISDGLLRLSIGIEHVDDLVADLEAALERAAAAVATAARVKR
>NZ_CP013141.1|WP_057973277.1|4707457_4708525_-|homoserine-O-succinyltransferase
MSFANSPAATFERSDSFVSYASPAIVSPDVFERTGRAAATRGEIAVELELRHSGRRNLILRYETQGDRSLPALFVAGGISAHRHLAPSREFGEQGWWQSQVGHGRSLDPSQHYLISFDWIGADGTLDVALDPADQADAIAALLDALRIERLQAFIGYSYGAMVGLQFASRHASRLGELVSISGTHRAHPYAAAWRALQRRAVALGALQCDESQGLALARELAVLSYRTPEEFAERFGNAEVRDGRVRVAAEDYLDHCGNKYVARTPTTAFLRLSESIDLQQIDPSTIRVPVTVVAVSEDRLIPLSESYDLIERLRGETRLRVLRSIYGHDACLKEESDINTILREALADCTQVAA

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Crispr_ID: NZ_CP013141_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_17

4976449-4976559

Orphan

Consensus_repeat	Method
GTAGGAGCGGCGTAAGCCGCGACCACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013141_17

>merge|NZ_CP013141|17|4976449-4976559|CRISPRCasFinder
GTAGGAGCGGCGTAAGCCGCGACCACGGGACGTGCAGAGACAGCAGCGCCGATGCATTCCATCGAGGCGACACCCTGTCGCAGGGTAGGAGCGGCGCAAGCCGCGACCACG

>NZ_CP013141|17|15|4976449-4976559|CRISPRCasFinder
GTAGGAGCGGCGTAAGCCGCGACCACG	GGACGTGCAGAGACAGCAGCGCCGATGCATTCCATCGAGGCGACACCCTGTCGCAGG
GTAGGAGCGGCGCAAGCCGCGACCACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057972654.1\|4990125_4991217_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP013141.1\|WP_057917153.1\|4980724_4981702_+\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NZ_CP013141.1\|WP_057972647.1\|4974039_4975011_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381369
NZ_CP013141.1\|WP_057917456.1\|4964742_4965213_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|234634
NZ_CP013141.1\|WP_057972648.1\|4975087_4976035_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274666
NZ_CP013141.1\|WP_057917454.1\|4967038_4969033_-\|SurA-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|182731
NZ_CP013141.1\|WP_057972650.1\|4982931_4985052_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP013141.1\|WP_057917154.1\|4979421_4980720_+\|Na+-dependent-nucleoside-transporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|224883
NZ_CP013141.1\|WP_057972651.1\|4985074_4986181_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377164
NZ_CP013141.1\|WP_169795698.1\|4977467_4978076_+\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_CP013141.1\|WP_057972646.1\|4973661_4973913_-\|hemin-uptake-protein-HemP	unknown	unknown	gnl\|CDD\|378463
NZ_CP013141.1\|WP_057972653.1\|4988578_4988914_+\|YegP-family-protein	unknown	unknown	gnl\|CDD\|225956
NZ_CP013141.1\|WP_057973289.1\|4971052_4973260_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP013141.1\|WP_057972649.1\|4978163_4979300_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP013141.1\|WP_057972652.1\|4986270_4988448_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|236643
NZ_CP013141.1\|WP_057972643.1\|4965340_4966903_+\|DUF839-domain-containing-protein	unknown	unknown	gnl\|CDD\|253386
NZ_CP013141.1\|WP_057972645.1\|4970476_4971049_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057919949.1\|4989020_4990019_+\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP013141.1\|WP_057972644.1\|4969451_4970411_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_082638839.1\|4963932_4964601_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057972654.1\|4990125_4991217_-\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	1.18588e-27
NZ_CP013141.1\|WP_057917153.1\|4980724_4981702_+\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	8.88253e-96
NZ_CP013141.1\|WP_057972647.1\|4974039_4975011_-\|aldo/keto-reductase	gnl\|CDD\|381369	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR). Voltage-gated potassium channel subunit beta (KCAB) from Arabidopsis thaliana and Egeria densa are founding members of aldo-keto reductase family 6 member C1 (AKR6C1) and C2 (AKR6C2), respectively. KCAB, also called Shaker channel b-subunit, or K(+) channel subunit beta, or potassium voltage beta 1, or KV-beta1, or KAB1, is a probable accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit.	0
NZ_CP013141.1\|WP_057917456.1\|4964742_4965213_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|234634	PRK00103, PRK00103, rRNA large subunit methyltransferase; Provisional.	1.12925e-77
NZ_CP013141.1\|WP_057972648.1\|4975087_4976035_+\|hypothetical-protein	gnl\|CDD\|274666	TIGR03593, yidC_nterm, membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system. [Protein fate, Protein and peptide secretion and trafficking].	0.00123959
NZ_CP013141.1\|WP_057917454.1\|4967038_4969033_-\|SurA-N-terminal-domain-containing-protein	gnl\|CDD\|182731	PRK10788, PRK10788, periplasmic folding chaperone; Provisional.	8.39503e-71
NZ_CP013141.1\|WP_057972650.1\|4982931_4985052_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.3361e-63
NZ_CP013141.1\|WP_057972651.1\|4985074_4986181_+\|PepSY-domain-containing-protein	gnl\|CDD\|377164	pfam03929, PepSY_TM, PepSY-associated TM region. The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.	1.33667e-49
NZ_CP013141.1\|WP_169795698.1\|4977467_4978076_+\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	1.83422e-50
NZ_CP013141.1\|WP_057972646.1\|4973661_4973913_-\|hemin-uptake-protein-HemP	gnl\|CDD\|378463	pfam10636, hemP, Hemin uptake protein hemP. This is a bacterial family of proteins that are involved in the uptake of the iron source hemin.	1.35396e-19
NZ_CP013141.1\|WP_057972653.1\|4988578_4988914_+\|YegP-family-protein	gnl\|CDD\|225956	COG3422, COG3422, Uncharacterized conserved protein [Function unknown].	2.17925e-19
NZ_CP013141.1\|WP_057973289.1\|4971052_4973260_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.83396e-133
NZ_CP013141.1\|WP_057972649.1\|4978163_4979300_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.69361e-44
NZ_CP013141.1\|WP_057972652.1\|4986270_4988448_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	0
NZ_CP013141.1\|WP_057972643.1\|4965340_4966903_+\|DUF839-domain-containing-protein	gnl\|CDD\|253386	pfam05787, DUF839, Bacterial protein of unknown function (DUF839). This family consists of several bacterial proteins of unknown function that contain a predicted beta-propeller repeats.	1.14673e-94
NZ_CP013141.1\|WP_057919949.1\|4989020_4990019_+\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	2.81222e-148
NZ_CP013141.1\|WP_057917154.1\|4979421_4980720_+\|Na+-dependent-nucleoside-transporter-domain-containing-protein	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	3.46255e-137
NZ_CP013141.1\|WP_082638839.1\|4963932_4964601_+\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	1.88761e-24

>NZ_CP013141.1|WP_057972648.1|4975087_4976035_+|hypothetical-protein
MTNLKTRGLIVIFIAIAVALLAWQLWRLRTPAPALPEPDAVQAEVADAAPETADTAPAAATSRKIQPAAGDYRNPALAELKNRADAGDSRASCQLGMELLRCTDLSAAEQVLAAADDNARPDMPAEQRAYMSKLENRARHMVAECRNAPDDAWKQGNHYLRQAALAGEPEAMYRYARGDSVLIDYSRMGTPEFDRWRAEAGNMMQLSFEAGYLPSVFDLMVGYSDNSSPITGLIPNDPTKARAMRLLIGRLSGKPADRPEARHAALEPAAVALAAQWQRDYFPTLKPPLQRMPRVMPAGFASLYADENVESPCSQ
>NZ_CP013141.1|WP_057972647.1|4974039_4975011_-|aldo/keto-reductase
MQYRRLGSSGLQISALSFGAWVTFGAQIGRDTARELIAAAWDHGINFFDNAEGYANGEAERVMGEAIADLRLPRDGYCVSSKVMFGSVEEPGPTQKGLSRKHVTEACHDALRRLRVEHLDLYYCHRPDPDVPVEETVWAMDALIRQGKVLYWGTSEWPAALIREAHKIARAHHLHAPTMEQPQYNLLHRERVELEYAPLYAELGLGTTIWSPLASGLLTGKYRDGISAQSRLGQADQQWLQRIVLGSSDQRRPQRADAFVAVARELGAEPAPLAIAWCLRNPHVSSVILGASRTEQLLQNLQALDWVERIDEAGWQRVESATA
>NZ_CP013141.1|WP_057972646.1|4973661_4973913_-|hemin-uptake-protein-HemP
MSLRNPVLQLKPRSDRPLAAVAAPVAVPSIASASATSVVVAAAQGVLVESTALLRGAREVLIRHGGEVYRLRHTRNDKLILTK
>NZ_CP013141.1|WP_057973289.1|4971052_4973260_-|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MALPAVAAAADAADSADVNELQRVVVSATRTERAVEDVAATVSAIDRERMDRELVRDLKDLFRYEPGIEVGANSERFGLGDIRIRGLGGNRVRVLVDGISVSDSFSIGSFSNAGRNFVDLDTVKEVEVVRGPSSALHGSDALGGVVSFVTKDPADYLKDGAGSYFGLKAGYDGKNESLFGGATAAFGGERWSGLVVLNHHQGEETGNQGGNAALDARRTRPNPQSNEGRSLLAKLVYAPSDRQRFRLTVEGSEDQTDTQVFSARGTALSMPGAPQVRVLSQTGDDHQTRARVAFAHEIDSLDSVLADSLRWQVYRQDSETTQRTREQRVSVIGGREISPTLRLREFNFDQRVYGAEATAHKDFATGAVEHTLTYGFEYEDTELRQKRDGRAVNLTTGAVSSVISPDTFPVRDFPVSKTRNAGVFVQDEIRFADGKFRLVPAVRVDRYELRPQQDPIWNADNPGVKISDLSKTSVSPKLGAVWHFAQDWSLFGGYQRGFRAPPYSDVNLGFTNLQFGYTAIPNPDLKPETSDGYELGLRFSTAAAYAQLSVYSNDYKDFIESNRQVSAPPQTPLIVFQSQNVAKARIRGVELRGGVDFGQLSDRLAGWSLRGAAAWSEGEDKTADRPLESIAPLTATLGVAYDRASWGVELAGRFAHRKSDLPAPNRFATPGYGVLDLLAHWDFAPGAKFNVGVFNLADKKYWDGANLPGLSAGSAIVDRYTAPGRNLGMSVAVSW
>NZ_CP013141.1|WP_057972645.1|4970476_4971049_-|hypothetical-protein
MRATLPTATLDRAGLPMPERLAAVATVLCVYPSRHRDALDGWLQAHSAERLVRHDGEALCEALLFRNGAGRACWRLYLLPDSDFLAWDDAAAELPAHRGFDTRSGVWPRLRRRWWRRLRGRWCAEVLRLHVLHDEAGHCVLLADAAELSDLGHAHARRIAAGEGARLRPQAHVCCCMASGLRDGAPPQYA
>NZ_CP013141.1|WP_057972644.1|4969451_4970411_-|hypothetical-protein
MTRRLYTASLLAITLVASRAVLALSPVPAAEASIERDRASILAMKGEYIVDFAFDETVLLKPGYERAAAMRSGGNETVIVVEDSPRKLVLQHILVDAKSGHVTKHWRQDWVYEAPQRFEFSADQTWHVRKIPAELNRGAWTQCVYEVSDAPRYCGTGHWDYRNGIATWTSDASWRPLPRREYTKRSDYNAVSAVNRHTITPNGWTHEQFNTKVLRKPDGSQEELAREFGFNDYQKTGEVDFKPAYTYWKATEGFWSKVRTRWDRYLERAPGVRLKTKIDGMAMIVPLFEQAGKLEDGKSVADGEIDAVFAKWVTAAPAE
>NZ_CP013141.1|WP_057917454.1|4967038_4969033_-|SurA-N-terminal-domain-containing-protein
MLQTLRDKTSGWIATVILGLLIIPFAFVGIEQYLVQRVDSSVARIDMAPSWWRSAPSWWPASMLWKHESIDAQEFNTRFQQERDRRRAAEGEAFDAREFEKPESKRAILETLIDERVRKLAAEVDGLAVSDALVIKTIQSVPEFQDSTGKFNQERYVLGLQMRQPAQTPTEFEQFVRARLMETLLTGGIGQSNFLTHAETDRLIKLMGERRDVSLVMLPPPTPDTAEVSAADIQKWYDGHAKDFRAPESVNLEYVEINGATLPPPPAPTEKALQDRYEAEKNRFIAQEQRLISHIQVNVASGADAAAQKAAEQKAAQFATQAKAAGADFAAIARANSDDLGSKAAGGELGWVSKGDIPGAFEDAAFKLKVGEISAPVKDDSGWHVIVVREVKSGEQQPFALVRDALLREETETSRERNFNDFSAKLVDLVYKNPTSLDGPAKAMNLPVQKVGPVTRDAAGNGQGIGAHPAVIRAAFSDARLQDNTVSDPIDIGQEHSVLIRVVSHTPERALPLAQVRDKVIAAVRTDRGIKAAQKEADALVARINGGEAIAAVAASKQLTAPETIPDVARGMPLPTPEVSEAIFALKAPAEGKVAAGKSALADGRVVLFAVNKVKPGSKSEIPAAQLDMLRTQISQMGGYEESRELTTALRKRVQIKVIEENLR
>NZ_CP013141.1|WP_057972643.1|4965340_4966903_+|DUF839-domain-containing-protein
MDAFDPSRRQVIKSSAAAMAIGAMGSLSALYTRQAAAATDPTRLSPVPSRYGALAPVADLSTGLPLLQLPRGFSYRSFAWSGDRMDDGQVCPDRHDGMAVVATHRGAQHPHGRGHGRSELILIRNHERGAGSSPIRAPGMYDTGTVSGGQPGGGTTTLRYRSGEGRHGDEWRGVEPSLGGTLVNCAGGPTPWGTWLSCEEIKSNAVSSTGHKHGYVFEVDPRSERTSGRPIVEMGRFSHEAVAIDPRTGIVYLTEDDRNKSGFYRFIPNRRAGCHGSLEHGGRLQAARVRGKPNADLTAVAIGAEYQLEWVDIPDPDLDSIAAPSGFPDIGAGDTLSGPFAQAWSEGGLRMSRGEGIWYSYGKLFIVDTSNGTDAQGRKGRGNGAVWVLDLFTQRMRALFVSSHQLAAHNPDNITVNARGGVVLCEDPDAAPAGSPDEYGPGTRLVGLTRGGESFYLCKNNAELTSTQIANAGKHVAEGDYRDSEFCGACWDPAARTLFVNMQSPGITFAITGPWERGPL
>NZ_CP013141.1|WP_057917456.1|4964742_4965213_-|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MKSRLIAVGERAPRWVAEGFGEYQKRLSHWLPLELVEIEPGLRGKGRDAVRATQDEGARVIAALPKNACVVALEGRGRLWTSEQLAQRLEQWRGQGRDLAFLIGGPEGHAPEVLARADEQWSLGPLTLPHMLVRLVAAEQLYRAAALLANHPYHRA
>NZ_CP013141.1|WP_082638839.1|4963932_4964601_+|energy-transducer-TonB
MVRAIPSHSHTPLDGTRIAANAGAIAFNAAMLMLMLVPLSAPRLLVSEEEPIFPQFVPKKEVLIQPKPPKPELVKVVEKPRQQPVIKQQVQPVEAPPVVVDNPNPQPIDFAGAETVAKATPAVDLGPPIITGATLQSLKNPPPSYPPQAVREGLTGVVELEILVGIDGKPIDVSIVRSSGHRLLDQAARKVVLNRWTFQPAMSNGQPVQARGRVPIEFKLDQ
>NZ_CP013141.1|WP_169795698.1|4977467_4978076_+|TMEM165/GDT1-family-protein
MPDPGVVMDLSFLPASVVTTLVSTGTVALAEIGDKTQLLALLLAARFRKPWPIIAGILVATLLNHALAAWFGTLVAHWLRPEVLRWIVAASFLAVALWTLKPDRLDEEPQFSARGAFLATTIAFFFAEIGDKTQVATVLLATRYEPLWAVIAGTTVGMLLANVPVALLGSRFADRLPLKTARYVAAAVFAALAIWVAVRGIG
>NZ_CP013141.1|WP_057972649.1|4978163_4979300_+|GGDEF-domain-containing-protein
MHGIGGRLRGVLVALLLRPDEIMLEIGAGGELLVARLRAVLAAMLLLLPLFNAIGGGSVKETMIGLGGAVFVNVFSQLWLALARRQRRYRWLPFTTAGFDVTATTLVLAALAAQHLPAGLNSLIVWCGYLFAILMTALRSDGRVTLFAGLLALVQYGVLITAVFAAADSPEELMSSDYGAVTLGSQSQRIVLLAMVTIATSMVVYRMQRLIEMSGTDGLTRLPNRTWLTHRIPRLFDTVRRDGGSLTLALIDLDHFKRINDDYGHRLGDRSLRHLVAVLREQAEPSEWLVRLSGGEFLLVMRKPLGTAFEEVDAIRRTVAERPFEPGRGAEPLWLSFSAGLVTFPQEGGDLSRLLRRADLRLQRAKQSGRNRVVARDI
>NZ_CP013141.1|WP_057917154.1|4979421_4980720_+|Na+-dependent-nucleoside-transporter-domain-containing-protein
MDSITRVAFGLFGLAVLVGIAWVFSVNRRSVDWKLVGIGISLQIAFASVVLLVPGGKDVFDAIGKGFVHVLEFVGAGSKFIFGDLMDVSKFGFIFAFQVLPTIIFFSALMGVLYHLGVMQAVVRAMAWAITKVMRVSGAETTSVCASVFIGQTEAPLTVRPYIPKMTESELITMMIGGMAHIAGGVLAAYVGMLGAGDQDAQAFYAKHLLAASIMAAPATLVIAKILVPETGEPLTRGTVKMEVEKNTANIIDAAAAGAGDGLRLALNIGAMLLAFIALIALVNAPLTWIGEQTGLAAAIGKPTDLSTLLGFLLAPIAWVIGTPWADANVVGGLIGEKVVLNEFVAYTHLADIVNGKVAGVALSDEGRLIATYALCGFANFSSIAIQIGGIGGLAPERRQDLARFGLRAVLGGSIATFMTATIAGVLTHFSA
>NZ_CP013141.1|WP_057917153.1|4980724_4981702_+|ribokinase
MSQASAGRVVVVGSFNVDHVWSLAALPQPGETLAGTYRTGPGGKGFNQATAAARAGAQTSFICALGEDVGGQLAHALAAGDGIDLRDLRSDAPTGTAGIYVDADGRNTIVIGPGANAELSAEFVGSHDALLGTAQVLLSQLETPVESAAAAFSAARRIGALTLLNPAPADAVASDALWALADVITPNETEFCAQLRLRTGATLDPDTLSVLPDAELHAHCRRLLGHGSVVVTLGKAGCFVSHADGALHGDDCAYYRCPAAAVKAVDTTGAGDAFNGALAASLAATGEAPFAAHVAYANRYAGLSTERVGAAAAMPRDAEVRARFG
>NZ_CP013141.1|WP_057972650.1|4982931_4985052_+|TonB-dependent-receptor
MPRFSFLASALLAALAAPVAHADEAKDIDRVTVSASTSRMPNSEAALANTITVIDQEQLRQQLAVTQDISQVLANLIPSFAPSRQKLTNGGETLRGRKPLYLIDGVPQSTPLREGGRDGHTIDPAMIERIEVIHGANALQGLGASGGIINIITKRAPRQDGERFHELSLGASTALPSQSDGSGYRASYLFGTRQGAFDFVGGVSFASEGLYYDGNGNAIAVNDIQGDLMDARSNNLFAKAGWDLDEQRRLQLTANRYELEGNNDYITVNGDIRSGRLATSARGSREGQGARNRSTSLVLDYTDKSVAGGYLQAQLYWVDFKGLYGATDWEDFWRDGRDPHWWDQSQNVSEKLGGKFSWSRDNLFDQRLRVTLGLDWGRDTTYQELVVSGLKWVPETQYESWSPFVQAEWWVADKVMLTGGVRHERGQLKVDDFTTIPANAGGSRFVEGGSPKTSKTLPNFGAVWEASDALKFYASYSEGYTVADIGRVLRGITAPNQRVDNLIDLSPVVSDNREVGLDFDDGRWVAHVAAYWSDSDLGSRLAFDRNTQSYNVVRERTEIRGVEANLAFRFSDAGRVGLGYAGAEGRYDSDGDDRVDSDLPGINISPDRIIAFWDHSWSENVSTRLQGSRSLDRDFDLKGVRVASTDGYTTLDLQARFKLPAGQLNLGVENLLDEQYVTYYSQSTPRNDTYVAGRGRVLSASWQYRF
>NZ_CP013141.1|WP_057972651.1|4985074_4986181_+|PepSY-domain-containing-protein
MSHRQAHTSLRSRLRTALKWLHLWLGLSAGLLFAVVALSGTVLAFQRELLVLAYPQLGEHALPTQEQRGRALERIVGHWQTQGMSSIDLPTATLPVWQAYFPDNERRYFDPASGELLLLRNTDNDLLLWLRDLHIHLLAGKTGEQVLGVVGLVAVFLLASGLYLWWPRWKALAASLKWYRGPPTRRWLSWHRGIGLWLLPLTLLATLTGVSMVYDDVVRDGLRAAFGDAKPRKPPKLEARDAPIDWTATLRAAEAAVAADGPLAGARLSRISLPKAGSGLIAIRSRAVDEWHPVGRSMVWFDPYQGRLIGTLDATRQGLGTRSYESIYPLHGGFVGGRLWQWLIALTGLAPPFLLVTGFLFWRRRRNR
>NZ_CP013141.1|WP_057972652.1|4986270_4988448_+|TonB-dependent-siderophore-receptor
MSSYFLLQSRRGSALALLCAAFASPAPAQSPPARQDAPDSTSEARDAIETLDEVTVQAQRQARYLARWSTGVTKADTPLLETPLSVSVVSRQQIDDQKPRSVSEALRYTPGAFVGLVGSADRYDYIALRGFIDNSTDNSVLDGLKLLGDSAGYNSLQIDPYFLERIDVFRGPSSVLYGRASPGGFAALTSKQPQFDYARSIEATFGTRRQSGAAFDFTGPLREDGEVRAAYRLVGLGRSSETQVEHTRRERYALAPSLLLQFGEGTDLLLQAYLQHDPDGGYHSGVPADATLDTTHNGRRISPRLFDGEPGRDAYSRRERLLGYRFEHRFGPNWSFRQHYRHVDSDVALRQVYGYGWASATELNRYYTGGDEALRAQAVDNQVQGRFETGAFAHTVSLGLDYQNRENQGYWLSGVAAPLDAFSPRYGQGRISEARNHWRHDFEQTGLYLHDQIALRQWRFSLSGRGDRVHMANIDRDHATRSSWSGSRFTSRLGAVYLFGNGLSPYLSYSESFNPNLYVGRDHRLLEPTESRQNEIGLKHQPPGSESLLSIAAYDLVQNHVASRVLATNYHEPAGQVRSRGLELEAKSQLGERFSAMASYTYTDMEYERGEAAYRGKTPYQAPRHMASLWADYAFAGGLGVGAGLRHVGSSWADRINTRKVPAYTLMDLSLRYELGRASAALRGLSLRVNANNLLDKRYVASCASLLYCYYGEERNVTATVRYDF
>NZ_CP013141.1|WP_057972653.1|4988578_4988914_+|YegP-family-protein
MAGRFLISKRSNGEFQFVLKAGNGEPILSSEGYKAKPSCINGIEAVRTNSQNDARYERKTSSSERPYFVLKAANGEIVGTSELYSSNGALEKGVASVRLNAPTAAVDDPTA
>NZ_CP013141.1|WP_057919949.1|4989020_4990019_+|tRNA-dihydrouridine-synthase-DusB
MRIGPYSLMPRVILAPMAGVTDKPFRVLSKRLGAGLCVSEMTTSDPRFWSTAKSRHRMDHDGEPDPISVQIAGTVPQIMADAARYNVDHGAQIVDINMGCPAKKVCNAWAGSALMRDEALVGRIVEAVVKAVDVPVTLKIRTGWDHDQRNAPNIARIAQDAGIAALAVHGRTRDQQYTGSAEYDTIAAIKAALSIPVIANGDIDSPHKAAFVLAHTGCDAVMVGRAAQGRPWIFREIAHYLAHGEELAPPTLAEVRDILLGHLEHLHAFYGEVSGVRIARKHLGWYAKDRPENAAFRAVVNRADTAELQLRLTRDYFDALVAGVAPDLPVAA
>NZ_CP013141.1|WP_057972654.1|4990125_4991217_-|metal-dependent-hydrolase
MDSLTQIVLGAALSAAIAPAGHRRAALLAGAALGTLPDLDVIPVNLFTADPVERMTWHRSLSHSLLVLPFIAWAIWAWCRERGGRVAQSPKRWFWAMQAALLTHPVLDAFTVYGTQLLWPLPVKPVMWSSVFIIDPLYTVWLLLACVVAWFARERRLAQPALVVGLALSSLYLGGSLWAKSRVEHEAEAALAKLGLEDAPRFSVPMPFNTLLWRVVAMTPGGFVEGERSLVADRGPMRFRAYDSDMEAFRQVSGYPAVHRLNWFNHGFMKAEQRDGRLIVTDLRMGAEPDYSFRFAVAERAAESWREIPPQQLQWPWDAARKLPAMWTRIWQEPEIVAEAQAPVPTSMRAAAIPAQSHNGGMR

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Crispr_ID: NZ_CP013141_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_18

4981735-4981845

Orphan

Consensus_repeat	Method
GGGTAGGAGCGACGCGAGTCGCGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013141_18

>merge|NZ_CP013141|18|4981735-4981845|CRISPRCasFinder
GGGTAGGAGCGACGCGAGTCGCGACCAAGGGACGCGGAGCGAATACACCGTTGCCGTGATCGATCGAAGCCGCGCACGTCCACGTGGGTAGGAGCGACGCGAGTCGCGACC

>NZ_CP013141|18|16|4981735-4981845|CRISPRCasFinder
GGGTAGGAGCGACGCGAGTCGCGACC	AAGGGACGCGGAGCGAATACACCGTTGCCGTGATCGATCGAAGCCGCGCACGTCCACGT
GGGTAGGAGCGACGCGAGTCGCGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_057972644.1\|4969451_4970411_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057972654.1\|4990125_4991217_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP013141.1\|WP_057972647.1\|4974039_4975011_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381369
NZ_CP013141.1\|WP_057917145.1\|4995014_4996238_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP013141.1\|WP_057917146.1\|4992189_4993017_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|277343
NZ_CP013141.1\|WP_057972648.1\|4975087_4976035_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274666
NZ_CP013141.1\|WP_057972650.1\|4982931_4985052_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP013141.1\|WP_057917154.1\|4979421_4980720_+\|Na+-dependent-nucleoside-transporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|224883
NZ_CP013141.1\|WP_169795699.1\|4993013_4994759_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|153248
NZ_CP013141.1\|WP_057972651.1\|4985074_4986181_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377164
NZ_CP013141.1\|WP_169795698.1\|4977467_4978076_+\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_CP013141.1\|WP_057972646.1\|4973661_4973913_-\|hemin-uptake-protein-HemP	unknown	unknown	gnl\|CDD\|378463
NZ_CP013141.1\|WP_057972653.1\|4988578_4988914_+\|YegP-family-protein	unknown	unknown	gnl\|CDD\|225956
NZ_CP013141.1\|WP_057972645.1\|4970476_4971049_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013141.1\|WP_057972649.1\|4978163_4979300_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP013141.1\|WP_082639056.1\|4991418_4992114_+\|amino-acid-racemase	unknown	unknown	gnl\|CDD\|224707
NZ_CP013141.1\|WP_057972652.1\|4986270_4988448_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|236643
NZ_CP013141.1\|WP_057919949.1\|4989020_4990019_+\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP013141.1\|WP_057917153.1\|4980724_4981702_+\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NZ_CP013141.1\|WP_057973289.1\|4971052_4973260_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_057972654.1\|4990125_4991217_-\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	1.18588e-27
NZ_CP013141.1\|WP_057972647.1\|4974039_4975011_-\|aldo/keto-reductase	gnl\|CDD\|381369	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR). Voltage-gated potassium channel subunit beta (KCAB) from Arabidopsis thaliana and Egeria densa are founding members of aldo-keto reductase family 6 member C1 (AKR6C1) and C2 (AKR6C2), respectively. KCAB, also called Shaker channel b-subunit, or K(+) channel subunit beta, or potassium voltage beta 1, or KV-beta1, or KAB1, is a probable accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit.	0
NZ_CP013141.1\|WP_057917145.1\|4995014_4996238_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP013141.1\|WP_057917146.1\|4992189_4993017_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.56232e-69
NZ_CP013141.1\|WP_057972648.1\|4975087_4976035_+\|hypothetical-protein	gnl\|CDD\|274666	TIGR03593, yidC_nterm, membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system. [Protein fate, Protein and peptide secretion and trafficking].	0.00123959
NZ_CP013141.1\|WP_057972650.1\|4982931_4985052_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.3361e-63
NZ_CP013141.1\|WP_169795699.1\|4993013_4994759_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|153248	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.	5.6232e-53
NZ_CP013141.1\|WP_057972651.1\|4985074_4986181_+\|PepSY-domain-containing-protein	gnl\|CDD\|377164	pfam03929, PepSY_TM, PepSY-associated TM region. The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.	1.33667e-49
NZ_CP013141.1\|WP_169795698.1\|4977467_4978076_+\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	1.83422e-50
NZ_CP013141.1\|WP_057972646.1\|4973661_4973913_-\|hemin-uptake-protein-HemP	gnl\|CDD\|378463	pfam10636, hemP, Hemin uptake protein hemP. This is a bacterial family of proteins that are involved in the uptake of the iron source hemin.	1.35396e-19
NZ_CP013141.1\|WP_057972653.1\|4988578_4988914_+\|YegP-family-protein	gnl\|CDD\|225956	COG3422, COG3422, Uncharacterized conserved protein [Function unknown].	2.17925e-19
NZ_CP013141.1\|WP_057917154.1\|4979421_4980720_+\|Na+-dependent-nucleoside-transporter-domain-containing-protein	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	3.46255e-137
NZ_CP013141.1\|WP_057972649.1\|4978163_4979300_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.69361e-44
NZ_CP013141.1\|WP_082639056.1\|4991418_4992114_+\|amino-acid-racemase	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	3.21864e-55
NZ_CP013141.1\|WP_057972652.1\|4986270_4988448_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	0
NZ_CP013141.1\|WP_057919949.1\|4989020_4990019_+\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	2.81222e-148
NZ_CP013141.1\|WP_057917153.1\|4980724_4981702_+\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	8.88253e-96
NZ_CP013141.1\|WP_057973289.1\|4971052_4973260_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.83396e-133

>NZ_CP013141.1|WP_057917153.1|4980724_4981702_+|ribokinase
MSQASAGRVVVVGSFNVDHVWSLAALPQPGETLAGTYRTGPGGKGFNQATAAARAGAQTSFICALGEDVGGQLAHALAAGDGIDLRDLRSDAPTGTAGIYVDADGRNTIVIGPGANAELSAEFVGSHDALLGTAQVLLSQLETPVESAAAAFSAARRIGALTLLNPAPADAVASDALWALADVITPNETEFCAQLRLRTGATLDPDTLSVLPDAELHAHCRRLLGHGSVVVTLGKAGCFVSHADGALHGDDCAYYRCPAAAVKAVDTTGAGDAFNGALAASLAATGEAPFAAHVAYANRYAGLSTERVGAAAAMPRDAEVRARFG
>NZ_CP013141.1|WP_057917154.1|4979421_4980720_+|Na+-dependent-nucleoside-transporter-domain-containing-protein
MDSITRVAFGLFGLAVLVGIAWVFSVNRRSVDWKLVGIGISLQIAFASVVLLVPGGKDVFDAIGKGFVHVLEFVGAGSKFIFGDLMDVSKFGFIFAFQVLPTIIFFSALMGVLYHLGVMQAVVRAMAWAITKVMRVSGAETTSVCASVFIGQTEAPLTVRPYIPKMTESELITMMIGGMAHIAGGVLAAYVGMLGAGDQDAQAFYAKHLLAASIMAAPATLVIAKILVPETGEPLTRGTVKMEVEKNTANIIDAAAAGAGDGLRLALNIGAMLLAFIALIALVNAPLTWIGEQTGLAAAIGKPTDLSTLLGFLLAPIAWVIGTPWADANVVGGLIGEKVVLNEFVAYTHLADIVNGKVAGVALSDEGRLIATYALCGFANFSSIAIQIGGIGGLAPERRQDLARFGLRAVLGGSIATFMTATIAGVLTHFSA
>NZ_CP013141.1|WP_057972649.1|4978163_4979300_+|GGDEF-domain-containing-protein
MHGIGGRLRGVLVALLLRPDEIMLEIGAGGELLVARLRAVLAAMLLLLPLFNAIGGGSVKETMIGLGGAVFVNVFSQLWLALARRQRRYRWLPFTTAGFDVTATTLVLAALAAQHLPAGLNSLIVWCGYLFAILMTALRSDGRVTLFAGLLALVQYGVLITAVFAAADSPEELMSSDYGAVTLGSQSQRIVLLAMVTIATSMVVYRMQRLIEMSGTDGLTRLPNRTWLTHRIPRLFDTVRRDGGSLTLALIDLDHFKRINDDYGHRLGDRSLRHLVAVLREQAEPSEWLVRLSGGEFLLVMRKPLGTAFEEVDAIRRTVAERPFEPGRGAEPLWLSFSAGLVTFPQEGGDLSRLLRRADLRLQRAKQSGRNRVVARDI
>NZ_CP013141.1|WP_169795698.1|4977467_4978076_+|TMEM165/GDT1-family-protein
MPDPGVVMDLSFLPASVVTTLVSTGTVALAEIGDKTQLLALLLAARFRKPWPIIAGILVATLLNHALAAWFGTLVAHWLRPEVLRWIVAASFLAVALWTLKPDRLDEEPQFSARGAFLATTIAFFFAEIGDKTQVATVLLATRYEPLWAVIAGTTVGMLLANVPVALLGSRFADRLPLKTARYVAAAVFAALAIWVAVRGIG
>NZ_CP013141.1|WP_057972648.1|4975087_4976035_+|hypothetical-protein
MTNLKTRGLIVIFIAIAVALLAWQLWRLRTPAPALPEPDAVQAEVADAAPETADTAPAAATSRKIQPAAGDYRNPALAELKNRADAGDSRASCQLGMELLRCTDLSAAEQVLAAADDNARPDMPAEQRAYMSKLENRARHMVAECRNAPDDAWKQGNHYLRQAALAGEPEAMYRYARGDSVLIDYSRMGTPEFDRWRAEAGNMMQLSFEAGYLPSVFDLMVGYSDNSSPITGLIPNDPTKARAMRLLIGRLSGKPADRPEARHAALEPAAVALAAQWQRDYFPTLKPPLQRMPRVMPAGFASLYADENVESPCSQ
>NZ_CP013141.1|WP_057972647.1|4974039_4975011_-|aldo/keto-reductase
MQYRRLGSSGLQISALSFGAWVTFGAQIGRDTARELIAAAWDHGINFFDNAEGYANGEAERVMGEAIADLRLPRDGYCVSSKVMFGSVEEPGPTQKGLSRKHVTEACHDALRRLRVEHLDLYYCHRPDPDVPVEETVWAMDALIRQGKVLYWGTSEWPAALIREAHKIARAHHLHAPTMEQPQYNLLHRERVELEYAPLYAELGLGTTIWSPLASGLLTGKYRDGISAQSRLGQADQQWLQRIVLGSSDQRRPQRADAFVAVARELGAEPAPLAIAWCLRNPHVSSVILGASRTEQLLQNLQALDWVERIDEAGWQRVESATA
>NZ_CP013141.1|WP_057972646.1|4973661_4973913_-|hemin-uptake-protein-HemP
MSLRNPVLQLKPRSDRPLAAVAAPVAVPSIASASATSVVVAAAQGVLVESTALLRGAREVLIRHGGEVYRLRHTRNDKLILTK
>NZ_CP013141.1|WP_057973289.1|4971052_4973260_-|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MALPAVAAAADAADSADVNELQRVVVSATRTERAVEDVAATVSAIDRERMDRELVRDLKDLFRYEPGIEVGANSERFGLGDIRIRGLGGNRVRVLVDGISVSDSFSIGSFSNAGRNFVDLDTVKEVEVVRGPSSALHGSDALGGVVSFVTKDPADYLKDGAGSYFGLKAGYDGKNESLFGGATAAFGGERWSGLVVLNHHQGEETGNQGGNAALDARRTRPNPQSNEGRSLLAKLVYAPSDRQRFRLTVEGSEDQTDTQVFSARGTALSMPGAPQVRVLSQTGDDHQTRARVAFAHEIDSLDSVLADSLRWQVYRQDSETTQRTREQRVSVIGGREISPTLRLREFNFDQRVYGAEATAHKDFATGAVEHTLTYGFEYEDTELRQKRDGRAVNLTTGAVSSVISPDTFPVRDFPVSKTRNAGVFVQDEIRFADGKFRLVPAVRVDRYELRPQQDPIWNADNPGVKISDLSKTSVSPKLGAVWHFAQDWSLFGGYQRGFRAPPYSDVNLGFTNLQFGYTAIPNPDLKPETSDGYELGLRFSTAAAYAQLSVYSNDYKDFIESNRQVSAPPQTPLIVFQSQNVAKARIRGVELRGGVDFGQLSDRLAGWSLRGAAAWSEGEDKTADRPLESIAPLTATLGVAYDRASWGVELAGRFAHRKSDLPAPNRFATPGYGVLDLLAHWDFAPGAKFNVGVFNLADKKYWDGANLPGLSAGSAIVDRYTAPGRNLGMSVAVSW
>NZ_CP013141.1|WP_057972645.1|4970476_4971049_-|hypothetical-protein
MRATLPTATLDRAGLPMPERLAAVATVLCVYPSRHRDALDGWLQAHSAERLVRHDGEALCEALLFRNGAGRACWRLYLLPDSDFLAWDDAAAELPAHRGFDTRSGVWPRLRRRWWRRLRGRWCAEVLRLHVLHDEAGHCVLLADAAELSDLGHAHARRIAAGEGARLRPQAHVCCCMASGLRDGAPPQYA
>NZ_CP013141.1|WP_057972644.1|4969451_4970411_-|hypothetical-protein
MTRRLYTASLLAITLVASRAVLALSPVPAAEASIERDRASILAMKGEYIVDFAFDETVLLKPGYERAAAMRSGGNETVIVVEDSPRKLVLQHILVDAKSGHVTKHWRQDWVYEAPQRFEFSADQTWHVRKIPAELNRGAWTQCVYEVSDAPRYCGTGHWDYRNGIATWTSDASWRPLPRREYTKRSDYNAVSAVNRHTITPNGWTHEQFNTKVLRKPDGSQEELAREFGFNDYQKTGEVDFKPAYTYWKATEGFWSKVRTRWDRYLERAPGVRLKTKIDGMAMIVPLFEQAGKLEDGKSVADGEIDAVFAKWVTAAPAE
>NZ_CP013141.1|WP_057972650.1|4982931_4985052_+|TonB-dependent-receptor
MPRFSFLASALLAALAAPVAHADEAKDIDRVTVSASTSRMPNSEAALANTITVIDQEQLRQQLAVTQDISQVLANLIPSFAPSRQKLTNGGETLRGRKPLYLIDGVPQSTPLREGGRDGHTIDPAMIERIEVIHGANALQGLGASGGIINIITKRAPRQDGERFHELSLGASTALPSQSDGSGYRASYLFGTRQGAFDFVGGVSFASEGLYYDGNGNAIAVNDIQGDLMDARSNNLFAKAGWDLDEQRRLQLTANRYELEGNNDYITVNGDIRSGRLATSARGSREGQGARNRSTSLVLDYTDKSVAGGYLQAQLYWVDFKGLYGATDWEDFWRDGRDPHWWDQSQNVSEKLGGKFSWSRDNLFDQRLRVTLGLDWGRDTTYQELVVSGLKWVPETQYESWSPFVQAEWWVADKVMLTGGVRHERGQLKVDDFTTIPANAGGSRFVEGGSPKTSKTLPNFGAVWEASDALKFYASYSEGYTVADIGRVLRGITAPNQRVDNLIDLSPVVSDNREVGLDFDDGRWVAHVAAYWSDSDLGSRLAFDRNTQSYNVVRERTEIRGVEANLAFRFSDAGRVGLGYAGAEGRYDSDGDDRVDSDLPGINISPDRIIAFWDHSWSENVSTRLQGSRSLDRDFDLKGVRVASTDGYTTLDLQARFKLPAGQLNLGVENLLDEQYVTYYSQSTPRNDTYVAGRGRVLSASWQYRF
>NZ_CP013141.1|WP_057972651.1|4985074_4986181_+|PepSY-domain-containing-protein
MSHRQAHTSLRSRLRTALKWLHLWLGLSAGLLFAVVALSGTVLAFQRELLVLAYPQLGEHALPTQEQRGRALERIVGHWQTQGMSSIDLPTATLPVWQAYFPDNERRYFDPASGELLLLRNTDNDLLLWLRDLHIHLLAGKTGEQVLGVVGLVAVFLLASGLYLWWPRWKALAASLKWYRGPPTRRWLSWHRGIGLWLLPLTLLATLTGVSMVYDDVVRDGLRAAFGDAKPRKPPKLEARDAPIDWTATLRAAEAAVAADGPLAGARLSRISLPKAGSGLIAIRSRAVDEWHPVGRSMVWFDPYQGRLIGTLDATRQGLGTRSYESIYPLHGGFVGGRLWQWLIALTGLAPPFLLVTGFLFWRRRRNR
>NZ_CP013141.1|WP_057972652.1|4986270_4988448_+|TonB-dependent-siderophore-receptor
MSSYFLLQSRRGSALALLCAAFASPAPAQSPPARQDAPDSTSEARDAIETLDEVTVQAQRQARYLARWSTGVTKADTPLLETPLSVSVVSRQQIDDQKPRSVSEALRYTPGAFVGLVGSADRYDYIALRGFIDNSTDNSVLDGLKLLGDSAGYNSLQIDPYFLERIDVFRGPSSVLYGRASPGGFAALTSKQPQFDYARSIEATFGTRRQSGAAFDFTGPLREDGEVRAAYRLVGLGRSSETQVEHTRRERYALAPSLLLQFGEGTDLLLQAYLQHDPDGGYHSGVPADATLDTTHNGRRISPRLFDGEPGRDAYSRRERLLGYRFEHRFGPNWSFRQHYRHVDSDVALRQVYGYGWASATELNRYYTGGDEALRAQAVDNQVQGRFETGAFAHTVSLGLDYQNRENQGYWLSGVAAPLDAFSPRYGQGRISEARNHWRHDFEQTGLYLHDQIALRQWRFSLSGRGDRVHMANIDRDHATRSSWSGSRFTSRLGAVYLFGNGLSPYLSYSESFNPNLYVGRDHRLLEPTESRQNEIGLKHQPPGSESLLSIAAYDLVQNHVASRVLATNYHEPAGQVRSRGLELEAKSQLGERFSAMASYTYTDMEYERGEAAYRGKTPYQAPRHMASLWADYAFAGGLGVGAGLRHVGSSWADRINTRKVPAYTLMDLSLRYELGRASAALRGLSLRVNANNLLDKRYVASCASLLYCYYGEERNVTATVRYDF
>NZ_CP013141.1|WP_057972653.1|4988578_4988914_+|YegP-family-protein
MAGRFLISKRSNGEFQFVLKAGNGEPILSSEGYKAKPSCINGIEAVRTNSQNDARYERKTSSSERPYFVLKAANGEIVGTSELYSSNGALEKGVASVRLNAPTAAVDDPTA
>NZ_CP013141.1|WP_057919949.1|4989020_4990019_+|tRNA-dihydrouridine-synthase-DusB
MRIGPYSLMPRVILAPMAGVTDKPFRVLSKRLGAGLCVSEMTTSDPRFWSTAKSRHRMDHDGEPDPISVQIAGTVPQIMADAARYNVDHGAQIVDINMGCPAKKVCNAWAGSALMRDEALVGRIVEAVVKAVDVPVTLKIRTGWDHDQRNAPNIARIAQDAGIAALAVHGRTRDQQYTGSAEYDTIAAIKAALSIPVIANGDIDSPHKAAFVLAHTGCDAVMVGRAAQGRPWIFREIAHYLAHGEELAPPTLAEVRDILLGHLEHLHAFYGEVSGVRIARKHLGWYAKDRPENAAFRAVVNRADTAELQLRLTRDYFDALVAGVAPDLPVAA
>NZ_CP013141.1|WP_057972654.1|4990125_4991217_-|metal-dependent-hydrolase
MDSLTQIVLGAALSAAIAPAGHRRAALLAGAALGTLPDLDVIPVNLFTADPVERMTWHRSLSHSLLVLPFIAWAIWAWCRERGGRVAQSPKRWFWAMQAALLTHPVLDAFTVYGTQLLWPLPVKPVMWSSVFIIDPLYTVWLLLACVVAWFARERRLAQPALVVGLALSSLYLGGSLWAKSRVEHEAEAALAKLGLEDAPRFSVPMPFNTLLWRVVAMTPGGFVEGERSLVADRGPMRFRAYDSDMEAFRQVSGYPAVHRLNWFNHGFMKAEQRDGRLIVTDLRMGAEPDYSFRFAVAERAAESWREIPPQQLQWPWDAARKLPAMWTRIWQEPEIVAEAQAPVPTSMRAAAIPAQSHNGGMR
>NZ_CP013141.1|WP_082639056.1|4991418_4992114_+|amino-acid-racemase
MPKPIGIVACSAEGAALCYRTICAEGARLLGPHAHPEISLHSHSLADYVSCLDRGDLDGVGELMLSSARKLAAAGAQFLICPDNTIHQAMAYVEARSPLPWLHIAQVVAQRAAERGFRRIGITGTRWLVESEVYPDKLGALGLDYVRPSAEERAQIGRIIMDELVYGSFKPESVAYFQQVIERFKHAGCDAVVLGCTEIPLIISDENSPLPTLDSTRLLARAALKRAVSGD
>NZ_CP013141.1|WP_057917146.1|4992189_4993017_-|UDP-2,3-diacylglucosamine-diphosphatase
MTPASITQLPIRRRAVFVSDVHLGAKHCHAEEFADFLQNLRCDRLYLVGDIVDLWWMAQRRAAWGSAQYRVVEALHALVRAGTELIYVPGNHDRSIRRFCGLVLPRMQVRRRAIHLTADGRRLLVTHGDDYDTVTQFGGMQEKFGDWLYERILTSNRLTNRVRRRFGLRYWSLADFLKRQSGAAERYISRFVQAGLGDASRRGLDGIVCGHIHRAALFERDGCVYANDGDWVESLTALAEDPDGTLRLLAHTGETLALLPARAPRLLPGALPHAA
>NZ_CP013141.1|WP_169795699.1|4993013_4994759_-|GNAT-family-N-acetyltransferase
MLQFERRLQERFPQWFRGRRAGIARPLLRTIGRWSKFDRVDGFLAENGHLRGFAFVTAALDFLQARYLVEAAELQRIPATGRLLIVANHPSGAVDALALLDAVARVRRDVRIVANDLLSALDGLEGLILPVRILGGRPSPDSLHAIEAALQAEQCVIVFPAGEVARLGLRGVTDGRWRRGFLRFARKTAAPVLPVRIEARNSALFYGASALFKPAGTALLAREMFARRARRVALRIGRPLRLPVDGDAERLLREVRRELHAIGTPRERSAPIGPEALIDAVDPALVRAGVEAMESLGQTIDGKQIRVGVLPAGAPLLREIGRLRELTFRAVGEGTGQRLDVDVFDSWYEHIVLWDAAEAKIAGAYRIARGSRVLAERGLAGLYTASLFRYADDAVPRLVQGMELGRSFVVPEYWGSRSIDYLWQGIGAYLCRHPGVRYLFGPVSISAALPADAREQIVAYYARYYGSDESAAVSKQPFVYRAAPPQFDALDAATAFRVLKGNLDALGASLPMLYKQYTDLCEPGGARFLAFGVDPAFSDAVDGLIEVDLQRLRPKKRERYLGAAPRALESGIEPAASEAVS
>NZ_CP013141.1|WP_057917145.1|4995014_4996238_+|methionine-adenosyltransferase
MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGAAIVAGEVTTNAWVDIEAIARKVINDIGYDNSNVGFDGHTCAIINMLGKQSPDIAAGVDRKKPEEQGAGDQGLMFGYACNEAPEFMPAPIYYSHRLVEQQAKIRKAKNSKLPWLRPDAKSQVTLRYDAEHKVVGLDAVVLSTQHDPGIKQKDLVEGVYEHVLKPVLPKAWLEKLPKSKVHINPTGIFVIGGPVGDCGLTGRKIIVDSYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADKCEVQVSYAIGVAEPTSISVTTFGTGKISDDKIEKLIRKHFDLRPYGIVKMLDLIHPVYQLTAAYGHFGRKPKEVSYVDGAGKKQTATAFSWEKTDKADDLRKDAGLKK

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Crispr_ID: NZ_CP013141_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013141_19

5508589-5508695

Orphan

Consensus_repeat	Method
GGTCGCGGCTTGCGCCGCTCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013141_19

>merge|NZ_CP013141|19|5508589-5508695|CRISPRCasFinder
GGTCGCGGCTTGCGCCGCTCCTACACGCGAGGTTTCACGGCTTCCAGAAATTACGCCAGCGTTGGATTTTCTGCGAATCCCGTGGTCGCGGCTTGCGCCGCTCCTAC

>NZ_CP013141|19|17|5508589-5508695|CRISPRCasFinder
GGTCGCGGCTTGCGCCGCTCCTAC	ACGCGAGGTTTCACGGCTTCCAGAAATTACGCCAGCGTTGGATTTTCTGCGAATCCCGT
GGTCGCGGCTTGCGCCGCTCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013141.1\|WP_031372746.1\|5523010_5524033_+\|3-oxoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|181732
NZ_CP013141.1\|WP_082638912.1\|5522448_5522826_+\|DUF4156-domain-containing-protein	unknown	unknown	gnl\|CDD\|372679
NZ_CP013141.1\|WP_057972884.1\|5510496_5512005_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340871
NZ_CP013141.1\|WP_057919327.1\|5507146_5508178_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380518
NZ_CP013141.1\|WP_057972885.1\|5518163_5518814_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP013141.1\|WP_057972877.1\|5496631_5498008_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP013141.1\|WP_082638909.1\|5500181_5501126_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP013141.1\|WP_057972883.1\|5508814_5510500_-\|cyclomaltodextrin-glucanotransferase	unknown	unknown	gnl\|CDD\|200478
NZ_CP013141.1\|WP_057919320.1\|5498304_5499060_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227044
NZ_CP013141.1\|WP_082639066.1\|5515274_5517035_+\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|200469
NZ_CP013141.1\|WP_057920245.1\|5495764_5496229_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|223297
NZ_CP013141.1\|WP_057972887.1\|5519818_5522056_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP013141.1\|WP_057972882.1\|5506101_5507046_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181886
NZ_CP013141.1\|WP_057972878.1\|5499194_5500115_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP013141.1\|WP_057972881.1\|5505373_5506102_+\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NZ_CP013141.1\|WP_144436691.1\|5503736_5505377_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173869
NZ_CP013141.1\|WP_057972886.1\|5518993_5519818_+\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NZ_CP013141.1\|WP_057972876.1\|5494453_5495683_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|183255
NZ_CP013141.1\|WP_082638911.1\|5512285_5515093_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP013141.1\|WP_057919331.1\|5517140_5518016_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809

Protein	Function_ID	Function_description	E-value
NZ_CP013141.1\|WP_031372746.1\|5523010_5524033_+\|3-oxoacyl-ACP-synthase-III	gnl\|CDD\|181732	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed.	0
NZ_CP013141.1\|WP_082638912.1\|5522448_5522826_+\|DUF4156-domain-containing-protein	gnl\|CDD\|372679	pfam13698, DUF4156, Domain of unknown function (DUF4156). The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.	7.05522e-14
NZ_CP013141.1\|WP_057972884.1\|5510496_5512005_-\|MFS-transporter	gnl\|CDD\|340871	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters. This group includes the solute carrier 45 (SLC45) family as well as plant sucrose transporters (SUCs or SUTs) and similar proteins such as Schizosaccharomyces pombe general alpha-glucoside permease. the SLC45 family is composed of four (A1-A4) vertebrate proteins as well as related insect proteins such as Drosophila sucrose transporter SCRT or Slc45-1. Members of this group transport sucrose and other sugars like maltose into the cell, with the concomitant uptake of protons (symport system). Plant sucrose transporters are crucial to carbon partitioning, playing a key role in phloem loading/unloading. They play a key role in loading and unloading of sucrose into the phloem and as a result, they control sucrose distribution throughout the whole plant and drive the osmotic flow system in the phloem. They also play a role in the exchange of sucrose between beneficial symbionts (mycorrhiza and Rhizobium) as well as pathogens such as nematodes and parasitic fungi. There are nine sucrose transporter genes in Arabidopsis and five in rice. Vertebrate SLC45 family proteins have been implicated in the regulation of glucose homoeostasis in the brain (SLC45A1), with skin and hair pigmentation (SLC45A2), and with prostate cancer and myelination (SLC45A3). Mutations in SLC45A2, also called MATP (membrane-associated transporter protein) or melanoma antigen AIM1, cause oculocutaneous albinism type 4 (OCA4), an autosomal recessive disorder of melanin biosynthesis that results in congenital hypopigmentation of ocular and cutaneous tissues. The SLC45 family and related sugar transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.83302e-62
NZ_CP013141.1\|WP_057919327.1\|5507146_5508178_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380518	cd06295, PBP1_CelR, ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.81051e-107
NZ_CP013141.1\|WP_057972885.1\|5518163_5518814_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	9.97536e-99
NZ_CP013141.1\|WP_057972877.1\|5496631_5498008_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	7.05935e-126
NZ_CP013141.1\|WP_082638909.1\|5500181_5501126_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.75632e-08
NZ_CP013141.1\|WP_057972883.1\|5508814_5510500_-\|cyclomaltodextrin-glucanotransferase	gnl\|CDD\|200478	cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	1.74223e-136
NZ_CP013141.1\|WP_057919320.1\|5498304_5499060_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227044	COG4700, COG4700, Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown].	2.26599e-63
NZ_CP013141.1\|WP_082639066.1\|5515274_5517035_+\|alpha-glucosidase	gnl\|CDD\|200469	cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP013141.1\|WP_057920245.1\|5495764_5496229_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	3.48901e-81
NZ_CP013141.1\|WP_057972887.1\|5519818_5522056_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.18727e-73
NZ_CP013141.1\|WP_057972882.1\|5506101_5507046_+\|ABC-transporter-permease-subunit	gnl\|CDD\|181886	PRK09471, oppB, oligopeptide ABC transporter permease OppB.	2.94931e-115
NZ_CP013141.1\|WP_057972878.1\|5499194_5500115_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.30547e-37
NZ_CP013141.1\|WP_057972881.1\|5505373_5506102_+\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	5.44227e-94
NZ_CP013141.1\|WP_144436691.1\|5503736_5505377_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	3.61391e-177
NZ_CP013141.1\|WP_057972886.1\|5518993_5519818_+\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.1415e-20
NZ_CP013141.1\|WP_057972876.1\|5494453_5495683_+\|MFS-transporter	gnl\|CDD\|183255	PRK11646, PRK11646, multidrug efflux MFS transporter MdtH.	1.40039e-90
NZ_CP013141.1\|WP_082638911.1\|5512285_5515093_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	7.43244e-19
NZ_CP013141.1\|WP_057919331.1\|5517140_5518016_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.00868251

>NZ_CP013141.1|WP_057919327.1|5507146_5508178_+|LacI-family-DNA-binding-transcriptional-regulator
MRKKSKATSVDIAHLAGVSQATVSRVLSGSPLVNADTRKRVEAVVRELNYKVDRHASSLRRQRSGTLAMLLFEDPTPDESHINPFFLSMLGSITRACARHGQDLLISFQQLSDDWAADYEDSMKADGLILLGYGDYLAYQGKLQKLVEQGTRFVRWGAVLPDQPGLSIGCENVGGGQQAGAHLVALGRRRVAFLGDASSHYPEFLDRFLGCEHALNEAGLALDRALQVDAESSEDAGHDAARELLARGLPFDAVFAASDLIALGAMRALTEHGLRVPEDVSVIGFDDIPMARVAHPPLTTIFQDTKQAGELLVDTLMKLVRGEEAHSIRLPTALVVRKSCGAE
>NZ_CP013141.1|WP_057972882.1|5506101_5507046_+|ABC-transporter-permease-subunit
MRSDSRSRHPVVARLGSRVLEAVITLWLLATLCFVLLRAAPGGPFDAEKVAPPEVQAALDAQYRLDQSLPMQYLAWLGDAVRGDLGPSFQYPDYTVNQLIGNALPVSALNGGLALLLALLLGVTLGVWAALRAGGWTDRALMLLAGLGLAIPKFVVAPLLVLLFAVTLHWLPAGGWGEWDNVVLPVIALALPNIAYCARLTRASMLDVLSADYLRAARARGLSETRLLFAHALKPALLPVVAWLSPALINVVTGSAVVEQVFGIPGMGRYFVQGALNRDYTLVLGVVLVIGALIVAINTAVDALRGWMDPRLEG
>NZ_CP013141.1|WP_057972881.1|5505373_5506102_+|VIT-family-protein
MTRPSSSTRLPPRRHHTETHRSDRVGWLRAAVLGANDGIVSVAGLVVGVAASGASPATILASGIAGTVAGAMSMAAGEYVSVRSQADTERADIAVERRELREDPDNELAELAHIYVQRGLTPELAQEVARQLTAHDALGSHARDELGITETLRARPVQAALASALAFVAGAALPIAAVLAAPAGRLEAVAIPTTLVALSISGGLAAWAGGAPVLRGAARVAFWGALAMAAASLVGRLFDVSV
>NZ_CP013141.1|WP_144436691.1|5503736_5505377_+|peptide-ABC-transporter-substrate-binding-protein
MQRYGAAVSLADLLGVFLMGALWAPAALAQAAPSQLERGNGPEPSTLDAHRCQEVACGNVLRDLYEGLVTEDARGRLVPGMAERWSVSADGRSWTFVLRGNLRWSNGEPIDAGQVVASFRRAFAPATAAPFGELFDALDNAQAVQAGKLPPERLGVSAPDPRSVRFRLNRSASLPALLTLPIAFPVYLPAVETHGAQHTRPGQLVSNGAYRLAAWTPQANLLLEKNPRFHDAAAVAIERVRFQVTEDAAAELQRFAAGDLHITEVVPPQPLASLRARFGSQLRLSPYLGAFWLGLNVTRPPFRSDACATQDCDERALALRRALSMAIDRDKLTRYVTGLGETPAYGIVPPGIAGYVPATTTWATRPQAQREAHARALYRHAGYSSDNPLVIELRYNTSTPHRRLALAVAAMWRQTLGVQVRLRNEEWKVFVQNRKQRTITQVFRGGWIGDLADARNFLAAFGSDGPLNWMGYDDAAYRERLAKADAAKSESARNAWLRAAEQRLLNDDAAIPLYFYSSKHLVSRRVRGFESNALDRHASRWLSLTP
>NZ_CP013141.1|WP_082638909.1|5500181_5501126_+|DMT-family-transporter
MTAAPLPVAAVPPPPRPLAPSRPLALRAGLMASASICLALLALLSRYTRGLPPELVTWLRFMIPGLCLVALARREDWRAVWSGADRPGWVRAVCVVISQGCFVLAAMRGDLLHAVLLYNTGPLFIPLIARVWLGERLRPAALTGLAIGFAGVLVVLQPAARGLDSTALISLFGGFAMAASQVLFYRSAQHQPPFRNQFKLYMQASTVGLPLAALGLGHLPSQPFTTESTTVLVLALLGMSLCSLGSQSLRDLAYRGMDNASTLAPLMYVAVPVSAALDWLLFAHAARLSTLAGAGLIVIGAVAALRSGARAKRG
>NZ_CP013141.1|WP_057972878.1|5499194_5500115_-|LysR-family-transcriptional-regulator
MTTPDPPSRRLPPLRALQAFAAVVRYDGMRRAAERMHLSHAALSQHVQHLEEAFGLRLLDRSGGRARPTPLGREYGEALIAGFEQIEAATARLRMRGDEGRRLILGAPTSLGVSLLLPRIEEFPAYAGLDLQLFCPATAQDLAQGRIHAALLHREPQADGLQGELLFEQAMLPVAAPDLHARLDRERWWQDPLPGVRLLHVASDGWRHDWPSWFGEDPAIWPLPHLRLSSPMPAISAALAGQGIALVYPRLIAERLASGELLPLPLPQPAPVKRVYLAWLPQAQGSARLGHLRDWLAGLLRADDGA
>NZ_CP013141.1|WP_057919320.1|5498304_5499060_-|tetratricopeptide-repeat-protein
MPYLGLGLHVIVALCFAVHAVRSGQDRYWLMILFMFPLLGSVVYGFAIWLPEQRHTQHGRALVGNVRRLLDPDRELREAQDAYETAATTDNRLRLADALLGKQRPADALPLYRASLSGIHREDPDIQVKLAHALLENGEAAQAQAVLDELIARRPDFRSPDGHLIYARAIAAQGDRAKARDEFETLLGYSSGFEPYVRYAETLVGWGELGRVRELCVQAQTRAKRLPAYARRMNKPALDRLKALEKQASAP
>NZ_CP013141.1|WP_057972877.1|5496631_5498008_-|phosphoenolpyruvate-carboxylase
MNVLLDTSDEPLRAVDFASTDALLRDDVKMLGALVGEILAEQRGPGFLDEVERLRRAAIRRREAQAPIGALAEALADTDLDQASDLVRAFATYFQAVNLAERVHRIRRRRDYERSGAGAQPGGLRDALGVLARQGVSAEEVAALLPRLRIEPVFTAHPTEAVRRALLEKERQIVGCLVDDIDRGRTPAERRADRERIRVALTASWQTAEAPAAKPSVADEFEHVGFYLSDVLYRVLPVYYEMFEEALRETYGPFAPLPDVLGFGTWVGGDMDGNPNVGADTIAATLSGQRALVLNAYRRELGTLAELLSQSVTRVRIDDAVLARVEDYRYQLPKAALLLKPRHADMPYRNLLSLMAARLQATVDESVHGYPDAATFLADIALIERSLANNQGAHAGSFAVRRLRRRAECFGFHLASLDLRQDSGTHDAALAALLDLPEWATLDVATRAARLHXXHTLN
>NZ_CP013141.1|WP_057920245.1|5495764_5496229_-|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MFDVILYQPEIPPNTGNVIRLCANTGARLHLVAPLGFTLEDKQLRRAGLDYHEYAAVRVHDSLAAALDAIAPPRLFALSTRGRVRHDQPRYAAGDAFVFGPETRGLPEDVLDRIPAEHRLRLPMRPDNRSLNLSNAVAVVVFEAWRQHDFAGGA
>NZ_CP013141.1|WP_057972876.1|5494453_5495683_+|MFS-transporter
MSESPPLHAPVPPGAEARRRGLNGLLVYTFFMVTGFAMLMPLVAVHFVNDVGLAAAAVGLALAVRQLTQQGLALVGGVLSDRFGARRMICLGVLLRAAGFASLAFADDLPLLLFAMAVSALGGAMFEAPYQASIAALTDERTRPRYYAISNWVSGVATTLGPLLGVALLRFDFRVVCLVAAACFALNFVIALRLLPSVAMPERPPPLRHGLDLVRRDRAFLSLVVLMMLYWFLAVQINISLPLLAQRLTGEVDSVGVMFAVSAGLTVLLQYGLVRWLEQRFSTAQVLVLGVVLMSLAVGAIGFSDGFAGFLLCIGGFAVGAVMTRPTQQTLIAGMADPRALGTFLGVSSLSLAIGGGLGNVAGGWLVDVAATRHWPWLPWSVFCAIGLLNALGLSMLLRTPRAQALPAA
>NZ_CP013141.1|WP_057972883.1|5508814_5510500_-|cyclomaltodextrin-glucanotransferase
MRALTLVALSLALAGCAHGPRDTAPAREYYGTLEPMASDAVYFVVTDRFVNGDPANDQREQGGPDPRTRSFDRPVPGAPDGESDNIGYLGGDFKGLLDNAGYIRDMGFGAVWLTPIVDNPDQAFTGGDAVTWGGAFQDRGKTGYHGYWGVDFYRLDEHLPSPGLDFAELTQGLKRHGLKTVLDIVANHGSPSFTMPKDQPKYGEIYRDGVLVADHQNLAPEKLDPAHNPLHRFFHAQKDLVQLSNLDDTQPEVLDYFVGAYSQWIDQGADAFRIDTIRHMPHAFWKSFAERIRAKRPGFFMFGEAFDYKAEHIAPFTWAENGGISVLDFPLKEGLAEVFGHRGGGFERLPPRLFLRDGPYANPYELMTFYDNHDMPRLSATDEGFIDANNWLFTARGIPVIYYGSEIGFQRGLAEHAGNRNYFGQERVDTAKAHPIHAALKRIAKVRQASPALQRGLQLNLLLQGERAVFYRVYEHAGQAQIALVLLNKGDEPTTFWIRNYLQAGRWRAALGGGTVEVGENDVIEATVPGHGVEVYLLDAPVRRADLAAALDEAMEHARRR
>NZ_CP013141.1|WP_057972884.1|5510496_5512005_-|MFS-transporter
MTERTERSAPPRKPQLSFWQIWNMCFGFLGIQFGFALQNANVSRIFQSLGAPIEDIPMLWIAAPLTGLIVQPIVGYLSDRTWTGLGRRRPYFLVGAVLATLALLAMPNSPTLWIAAGLLWVLDASINISMEPFRAFVGDQLPTAQRPSGYAMQSFFIGVGSVVASVLPFALAHLGVGNTAGPGEVPDTVRYAFYFGGAVLLLSVGWTVLRTREYPPETLQSFDDALPEPPRPNRDRVRCALFGASWLVVGGLVATTISMCGLDRQLYVLAGMIGAFGVALLVRGMIGAGGGFATVMDDLHSMPPTMVRLAVVQFFSWFALFAMWIYTTSTVTQLHFHSSDTTSAAYNEGANWVGVLFAAYNGFAALAAIAIPRMVRRWGLRWSHLCNVSLGGLGLISIALIRDSQWLLLSMLGVGFAWASILSLPYALLSDSVPATKMGVYMGIFNFFIVIPQLVAVSLLGALVKFFFAGAPAGALVIGGVSLFVSGLCVLWVREPGTGAAA
>NZ_CP013141.1|WP_082638911.1|5512285_5515093_-|TonB-dependent-receptor
MSRTNRASSNQQRHLLTVALASFGLCNSWTVWAADAPAAQDAPAAASAEAAPTSAAHELDAVQVTGNRRVQSIQKYAGTIQSFSGEDLTKLGINTDFRNLQAVVPGLQITRQEGKYEIFLRGIGAADSDFSSDPSVATYYNGIYLPRPRSIGPMFFDVDRIEVNKGPQGTVRGRNATGGSINVISKRPELGVTSGGLKVGAGNHDFTTAEGVLNLPIGETFALRAALFDEERSSYIKNGYPSSLFAGEGPGALDNQAARLSMLWEPNDKFSAYVMLDKVSERGTGDPGLFAERGLAAGYDIDDLSDPFRQYFRTQGKTSNDIEGVAGTFTYAFNDAVSVEFNTSYRKYEFDNRNASREWQLGPVYPGSEREAYHNPERLAWYDTFYQSDKSSSTINELRFFGDTGKLIWSAGLFNYEEKYDYTSWDVGNGYFGDCDWWRPGTVCGWQDGLGGENRGDDSKVESNAVYGDFSFAATDSLRLIGGVRYTRDKKTARESNVKYQFVIPEELFQQFTGQPINTATNPYTTGLVLGSPGFQLAPPGRRGGGDPSVCTGWSPAELRCGPGADSLDYFLGGIQNFGAQDNWAQFLTRNRDQIDVIVRSDFPGGKSVDVYEDSYVDWRVGFEYDLNPQVMLYGTVSTGTRSGGINRPLLLNDGSALAPTFEPEELTSYEAGIKGDYLWGETPVRLNASVFYYDYQNKVLQNLIDVPAPTPTNPNATSRQVFNDNAANASVLGLELEGRVGLPHGFNLGYNFTYLDATFDDSKVLDTRSGGLGLIVPLDGNRLPNTSKYNANLSLSQTIDIGRGALNSFDWTINLTYRSDYYLTAFNSRGFGQDAAGNVIEIPLADMPFNNGSNPAAGGGPANGMAMRDDVGGFTTVNVSAGLNFGEDSQFRIDGFVSNLTDEVYSGKGFVNNATNIRYLNTPRMYGIRFSSQF
>NZ_CP013141.1|WP_082639066.1|5515274_5517035_+|alpha-glucosidase
MNTYAGRQAANAPGAKLAHIAAVQHEDRIRHQGRHLSAVNLPTPAAAHEHAWWRGAVIYQIYPRSFRDLDGDGVGDLPGIIDKLGYVADLGVDAIWISPFFKSPMADFGYDIADYRAVDPLFGDLDDFDRLLAKAHALGLRVMIDQVLSHTSDQHEWFKRSRESRDNDYADWYVWADASPDGTAPNNWMSLFGGVAWRWEPRRQQYYLHNFLSSQPDLNFHNPDVRAAVLDNVRFWLDRGVDGLRLDAINFCFHDAQLRDNPPKPAELRVGRGFSPDNPYAFQYHYYNNTRPENLAFLAELRALLDRYPGAVALGEISSEDSLATSDEYTRHGRLHMGYSFELLTDDRSAGYIRGTVQTLENAMREGWPCWSISNHDVQRVVTRWGRGGTLPAHYPSLLSALVCSLRGSVCVYQGEELGLPEAELPFEALQDPYGKTFWPTFKGRDGCRTPMPWDATPQAGFSTGTPWLPVAEGHRGLDVARQQHDPDSSLNRFRRFLSWRKTRPALLDGAIGFLASDEPVLAFVRGSGADAVLMAFNLGDAEAELALPEAGAWHTDRGHGLPSGERVGERVRLPPYAVFAARAAG
>NZ_CP013141.1|WP_057919331.1|5517140_5518016_-|tetratricopeptide-repeat-protein
MDTITDPQTILAAGAYGTALLFFAYGAYALLKTRNAEQNKNVRWYLGIGAAVVVAMIGFDTLKSWRSGERVVPNVYLTFSPRFSAIDLPDPEIIYRGQAFSPNAAIEVADNNSSINISVDSIIKKVEDLQQNNRDLRNAVGSAALANQAPELADEIAAAKAGGEDACAGGDATLCGWKQLSEGKLDSAQETLTQAVKDTPASNPKTRATALSGLGEIYVGQGRIAEAQVVLRKAAALGNEGAKKRLDTLALPPKEQRLRPTPVPAPELQRAPLQRELLQREARAARLPARG
>NZ_CP013141.1|WP_057972885.1|5518163_5518814_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MNNPLARARYLLSAHNVKQLPPDGGFEVAFAGRSNAGKSSALNAMCQQNALARVSKTPGRTQQLVFFDVSPLYRGPEPAPEPDRFLVDLPGYGYAKVPQNLQAHWQAFLDRYFGTREALRGLVVVMDIRHPLKDYDRQMLGYAVERGLPAHALLTKADKFGRGQQQQQLMMVRKELSSAFGDTVSVQTFSGESKQGVEEACTVVSRWLELVPPPAA
>NZ_CP013141.1|WP_057972886.1|5518993_5519818_+|cytochrome-c4
MSQARVLGLVGLAALAAAAVAYAQATVTPIPDKEPVQTAPLNAAAKASWGDVKAGATKAGTCAACHGLDGNPTDPQYPRLAGQSERYIAHQIALFKSGERNTGMAAAMKPFADALSDQDARDLGAYFATQKSGAGVADDTLIASGVNKGKKFFEVGEQLFRNGDKARGIPACMACHGPSGAGNPGPAYPHIAGQQAAYSQRRLEEYRAGTTTQKDPHLFNIMATVAKQLSDEEIGSLSSYLQGLHERADDVAAADAPAPAVAAPAASXXTHLIN
>NZ_CP013141.1|WP_057972887.1|5519818_5522056_+|insulinase-family-protein
MCXXLDDVKTWFRSWYGPNNAVLVLAGDIDLATAKDKALRYFGDIPASATLPDMAARVPKRERDTEETVPDRVPQARVYRAWPVAEFGSADGTELGLFAQVLGGSAASRLDARLVHADRIADSASVSINDAEISGTLVVVANVKQGVDPAKVRAAIDEEIKRLIEQGPTAQELEQAKTASRADFVRGVERIGGFGGKSDVLARCAVLLGKPDCYRDELKELAAATPASVQAAGRKWLGVGSHTLIVQPGDKPASSLPETVRAAPATRPAAIPAADPRFKTVASTVDRSAGVPVTQRFPDLNFPTPQRARLGNGMEVVLIERHETPVVQLAMEFPGGFSADLGKKVGTASFGMAMLDEGAGDYGALQLSARKEALGVELSSNASLDSANVAMSALTDKLEPSLDLFADVVRRPRFEAAEIERVRAQWLAGIKQEKARPQTAALRVLPPLLYGAGHAYAIPFTGTGTEASIASLSRDDLVAFHRDWLQPDRARVFVVGDTTLAQIVPQLERRFGDWKAAADAPALPALATVARPKAPRVFLVDQPGAIQSNLYVGELIAPTGDAGTIDFDFANGVLGGEFSSRLNMNLREDKHWAYGSYSGSGNAKGQRPWIAQAAVQSDKTVESLAELKREIESFASGSTPISAAEVAKIRASNTLSLPGAYETTDALMAQVSADQRYGRPADYILEYKARNEAMTPALAQAAAKTLDPAALTWVVVGDLSKIEQPIRALKLGEVEVIDQDGKPKR
>NZ_CP013141.1|WP_082638912.1|5522448_5522826_+|DUF4156-domain-containing-protein
MRALAILSLVLSVSACTWVQMAPGAQAVRVLSGGAAPSGCEKRGEVVVAVKHNVAFYERNALRVREELETLARNEAPGLQADTIQPVAAPADGQQRFAAYRCGPGAAPAAQSAPSAAAQTYPVGG
>NZ_CP013141.1|WP_031372746.1|5523010_5524033_+|3-oxoacyl-ACP-synthase-III
MLFQHVAIAGLAHVDAPRKLTSDEINARLKPTLDRLGIKVNVLQDVAGVHERRLWDGEMRASDAATLAAVKALADAAVDTDRIGLLVNTSVSRDYLEPSTASIVAGNLRLGENCQNFDVANACLAFLNGMDIAGRMIERGEIDYALVVDGETANLAYEKTIERLSKADVTESQLRDEMATLTLGSGAAAMVLARAELAPGAPRYRGGVTRSATEWNQLCLGDLHHDRMVADGRMLMIEGLKLGHKTFAAAKAALGWAVEELDEFVIHQVSRAHTQAFLKAFGIDPKKVMTIFGEHGNIGPASVPIVLSKLREMGRLKKGSRVALLGIGSGLNCSMAEVVW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	KJ538722	Mycobacterium phage HH92, complete genome	20241-20271	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	KT222940	Mycobacterium phage Kinbote, complete genome	20241-20271	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MH727549	Mycobacterium phage Gancho, complete genome	19965-19995	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MK919482	Mycobacterium phage DeepSoil15, complete genome	20241-20271	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MT657330	Mycobacterium phage Webster2, complete genome	20241-20271	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MF919517	Mycobacterium phage LilHazelnut, complete genome	20241-20271	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	EU203571	Mycobacterium phage Giles, complete genome	20241-20271	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MK494095	Mycobacterium phage Daegal, complete genome	20535-20565	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MT818421	Mycobacterium phage Luke, complete genome	20241-20271	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MH697577	Mycobacterium phage Amochick, complete genome	20247-20277	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MT684594	Mycobacterium phage Hadrien, complete genome	20241-20271	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MT114159	Mycobacterium phage Ein37, complete genome	20241-20271	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	KT246485	Mycobacterium phage OBUpride, complete genome	20235-20265	4	0.871
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	KT454972	Mycobacterium phage Evanesce, complete genome	20241-20271	4	0.871
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NC_016115	Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence	19324-19357	4	0.882
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	KR080200	Mycobacterium phage AlanGrant, complete genome	71076-71106	5	0.839
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	KR080194	Mycobacterium phage Vincenzo, complete genome	71106-71136	5	0.839
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MH509442	Mycobacterium phage Aminay, complete genome	3496-3526	5	0.839
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP022193	Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence	147832-147862	5	0.839
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NC_005284	Burkholderia phage phi1026b, complete genome	21674-21707	5	0.853
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	AF447491	Bacteriophage phiE125, complete genome	22413-22446	5	0.853
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	AY453853	Bacteriophage phi1026b, complete genome	21674-21707	5	0.853
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NC_003309	Burkholderia phage phiE125, complete genome	22413-22446	5	0.853
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	156360-156393	5	0.853
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	158999-159029	5	0.839
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	633763-633793	6	0.806
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NC_020543	Sphingomonas sp. MM-1 plasmid pISP2, complete sequence	25343-25373	6	0.806
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	774344-774374	6	0.806
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5304285-5304315	6	0.806
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	671376-671406	6	0.806
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	377230-377260	6	0.806
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	668862-668892	6	0.806
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	667050-667080	6	0.806
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1816071-1816101	6	0.806
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	1025229-1025259	6	0.806
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	347273-347303	6	0.806
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	831961-831991	6	0.806
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	1025228-1025258	6	0.806
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	252934-252964	6	0.806
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	1064040-1064070	6	0.806
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	853749-853779	6	0.806
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NC_009956	Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence	93252-93285	6	0.824
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_LR594669	Variovorax sp. SRS16 plasmid 4	91627-91660	6	0.824
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	89940-89973	6	0.824
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	KT997827	Uncultured Mediterranean phage uvDeep-CGR0-KM15-C219, complete genome	10353-10383	6	0.806
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NC_019957	Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence	252636-252666	6	0.806
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NC_022049	Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence	39024-39054	6	0.806
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NC_010335	Caulobacter sp. K31 plasmid pCAUL01, complete sequence	223396-223426	7	0.774
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MN813686	Mycobacterium phage BirdsNest, complete genome	61652-61682	7	0.774
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	463022-463052	7	0.774
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NC_002699	Frankia sp. CpI1 plasmid pFQ12, complete plasmid sequence	6540-6570	7	0.774
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP040763	Paracoccus sp. 2251 plasmid unnamed4, complete sequence	22350-22380	7	0.774
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	425109-425139	7	0.774
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NC_019790	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE02, complete sequence	2605-2635	7	0.774
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	225362-225392	7	0.774
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP049814	Monaibacterium sp. ALG8 plasmid unnamed3, complete sequence	73337-73367	7	0.774
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1951453-1951483	7	0.774
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP033582	Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence	510958-510988	7	0.774
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	MN813686	Mycobacterium phage BirdsNest, complete genome	31253-31283	7	0.774
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	178249-178279	7	0.774
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	313577-313607	7	0.774
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	106723-106753	7	0.774
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	259684-259714	7	0.774
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	151310-151340	7	0.774
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	180945-180975	7	0.774
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	62996-63026	7	0.774
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NZ_LR594669	Variovorax sp. SRS16 plasmid 4	455850-455883	7	0.794
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	47689-47722	7	0.794
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	MN096362	Arthrobacter phage Vibaki, complete genome	28753-28786	7	0.794
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	MH588547	Caulobacter phage CcrSC, complete genome	66328-66361	7	0.794
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NC_048047	Caulobacter phage CcrBL9, complete genome	66946-66979	7	0.794
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	306892-306925	7	0.794
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NC_048046	Caulobacter phage CcrPW, complete genome	54052-54085	7	0.794
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	JX100810	Caulobacter phage CcrColossus, complete genome	48485-48518	7	0.794
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_LR594669	Variovorax sp. SRS16 plasmid 4	345751-345784	7	0.794
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	834261-834294	7	0.794
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	485950-485983	7	0.794
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_CP022416	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence	222465-222498	7	0.794
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1123135-1123165	7	0.774
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	689991-690021	7	0.774
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NZ_CP024582	Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence	351415-351445	7	0.774
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NC_011879	Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence	276664-276694	7	0.774
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	75888-75918	7	0.774
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	AM419438	Archaeal BJ1 virus complete genome	33614-33644	7	0.774
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NC_008695	Archaeal BJ1 virus, complete genome	33614-33644	7	0.774
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	901962-901992	7	0.774
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NZ_CP027299	Streptomyces sp. SGAir0924 plasmid unnamed_5	251735-251765	7	0.774
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	193436-193466	7	0.774
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NC_023283	Streptomyces sp. FR1 plasmid pFRL3, complete sequence	365667-365697	7	0.774
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	KF147891	Pseudomonas phage PaBG, complete genome	27743-27773	7	0.774
NZ_CP013141_13	13.1\|4379189\|31\|NZ_CP013141\|CRISPRCasFinder	4379189-4379219	31	NZ_CP039902	Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence	9589-9619	8	0.742
NZ_CP013141_13	13.1\|4379189\|31\|NZ_CP013141\|CRISPRCasFinder	4379189-4379219	31	NZ_CP039893	Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence	194413-194443	8	0.742
NZ_CP013141_13	13.1\|4379189\|31\|NZ_CP013141\|CRISPRCasFinder	4379189-4379219	31	NZ_KY000025	Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence	11429-11459	8	0.742
NZ_CP013141_13	13.1\|4379189\|31\|NZ_CP013141\|CRISPRCasFinder	4379189-4379219	31	NZ_KY000029	Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence	11429-11459	8	0.742
NZ_CP013141_13	13.1\|4379189\|31\|NZ_CP013141\|CRISPRCasFinder	4379189-4379219	31	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	62953-62983	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	434340-434370	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NC_030916	Tsukamurella phage TPA4, complete genome	54831-54861	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	112575-112605	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP050106	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence	233965-233995	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MH067971	Arthrobacter sp. strain ANT_H40 plasmid pA40H2, complete sequence	31001-31031	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	MH067977	Arthrobacter sp. strain ANT_H8 plasmid pA8H1, complete sequence	36503-36533	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP025506	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence	223994-224024	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	234149-234179	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP030763	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence	689709-689739	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP018865	Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence	60781-60811	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP022668	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence	112100-112130	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP050088	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence	369690-369720	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP013298	Arthrobacter sp. YC-RL1 plasmid unnamed 1, complete sequence	13619-13649	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	279460-279490	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP020909	Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence	448557-448587	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP013538	Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence	273848-273878	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	279460-279490	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1610543-1610573	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1482054-1482084	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP017427	Methylobacterium sp. XJLW plasmid unnamed1, complete sequence	68253-68283	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	710510-710540	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	677228-677258	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	JN698995	Mycobacterium phage Dori, complete genome	21230-21260	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	KY555144	Caulobacter phage Ccr5, complete genome	41185-41215	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	691359-691389	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	691367-691397	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	390949-390979	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	390945-390975	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP014598	Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence	199985-200015	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP039640	Azospirillum sp. TSH100 plasmid p1, complete sequence	26609-26639	8	0.742
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NC_048729	Mycobacterium phage Renaud18, complete genome	10374-10404	8	0.742
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP017947	Bosea sp. Tri-49 plasmid unnamed1, complete sequence	189955-189985	8	0.742
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	20139-20169	8	0.742
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	775556-775586	8	0.742
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	MT855965	Microcystis phage vB_MaeS-yong1, complete genome	38907-38937	8	0.742
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	911995-912028	8	0.765
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	440962-440995	8	0.765
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	MN234213	Gordonia phage Schiebs, complete genome	7875-7908	8	0.765
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	327107-327140	8	0.765
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	MK737944	Microbacterium phage Warren, complete genome	38167-38200	8	0.765
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	449084-449117	8	0.765
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_CP050099	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence	387072-387105	8	0.765
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	413284-413317	8	0.765
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_CP011450	Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence	326890-326923	8	0.765
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	135022-135052	8	0.742
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4913949-4913979	8	0.742
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NZ_CP026653	Streptomyces dengpaensis strain XZHG99 plasmid unnamed1, complete sequence	26820-26850	8	0.742
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	170011-170041	8	0.742
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	MT855965	Microcystis phage vB_MaeS-yong1, complete genome	22583-22613	8	0.742
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	MF042361	Pseudomonas phage Skulduggery, complete genome	35798-35828	8	0.742
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NZ_CP032692	Rhizobium sp. CCGE532 plasmid pRCCGE532b, complete sequence	145337-145367	8	0.742
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	56649-56679	8	0.742
NZ_CP013141_13	13.1\|4379189\|31\|NZ_CP013141\|CRISPRCasFinder	4379189-4379219	31	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1150060-1150090	9	0.71
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	136163-136193	9	0.71
NZ_CP013141_13	13.2\|4379243\|31\|NZ_CP013141\|CRISPRCasFinder	4379243-4379273	31	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	329867-329897	9	0.71
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	MN234161	Gordonia phage Toast, complete genome	39831-39861	9	0.71
NZ_CP013141_13	13.3\|4379297\|31\|NZ_CP013141\|CRISPRCasFinder	4379297-4379327	31	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1370793-1370823	9	0.71
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NZ_CP050126	Rhodococcus erythropolis strain KB1 plasmid plas2, complete sequence	22233-22266	9	0.735
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NZ_LR134465	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence	5646-5679	9	0.735
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NC_017965	Advenella kashmirensis WT001 plasmid pWTk445, complete sequence	3724-3757	9	0.735
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_CP022566	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence	363431-363464	9	0.735
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	189260-189293	9	0.735
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	132347-132380	9	0.735
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	30040-30073	9	0.735
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NZ_CP049749	Rhodococcus fascians A21d2 plasmid pA21d2, complete sequence	122329-122359	9	0.71
NZ_CP013141_13	13.1\|4379189\|31\|NZ_CP013141\|CRISPRCasFinder	4379189-4379219	31	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	936243-936273	10	0.677
NZ_CP013141_13	13.1\|4379189\|31\|NZ_CP013141\|CRISPRCasFinder	4379189-4379219	31	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	937242-937272	10	0.677
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	MN369749	Mycobacterium phage MinionDave, complete genome	8294-8327	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	MH744415	Mycobacterium phage ArcusAngelus, complete genome	7634-7667	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	MN585973	Mycobacterium phage StAnnes, complete genome	7646-7679	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	MH590598	Mycobacterium phage Krakatau, complete genome	8298-8331	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	KM101124	Mycobacterium phage Squirty, complete genome	7468-7501	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	MH651178	Mycobacterium phage KristaRAM, complete genome	8295-8328	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	MH669001	Mycobacterium phage EleanorGeorge, complete genome	7647-7680	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NC_009820	Mycobacterium phage Tweety, complete genome	7647-7680	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NC_021301	Mycobacterium phage SiSi, complete genome	7632-7665	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	KR824843	Mycobacterium phage Ovechkin, complete genome	7645-7678	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	HQ728524	Mycobacterium phage Wee, complete genome	7645-7678	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	JN020142	Mycobacterium phage Mutaforma13, complete genome	7644-7677	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NC_042323	Mycobacterium virus Mozy, complete genome	7491-7524	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NC_022056	Mycobacterium phage Hamulus, complete genome	7649-7682	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	804828-804861	10	0.706
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NZ_CP015597	Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence	166771-166804	10	0.706
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	MG962374	Mycobacterium phage Paola, complete genome	22566-22596	10	0.677
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	KX585251	Mycobacterium phage Waterfoul, complete genome	22587-22617	10	0.677
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	MH051255	Mycobacterium phage Leston, complete genome	22696-22726	10	0.677
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	KX636165	Mycobacterium phage Gengar, complete genome	22591-22621	10	0.677
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	MF185720	Mycobacterium phage Guillsminger, complete genome	22566-22596	10	0.677
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	NC_024366	Mycobacterium phage OkiRoe, complete genome	22567-22597	10	0.677
NZ_CP013141_13	13.6\|4379465\|31\|NZ_CP013141\|CRISPRCasFinder	4379465-4379495	31	MH576966	Mycobacterium phage Thyatira, complete genome	22566-22596	10	0.677
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	114206-114239	11	0.676
NZ_CP013141_13	13.4\|4379351\|34\|NZ_CP013141\|CRISPRCasFinder	4379351-4379384	34	NZ_CP029835	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence	79645-79678	12	0.647
NZ_CP013141_13	13.5\|4379408\|34\|NZ_CP013141\|CRISPRCasFinder	4379408-4379441	34	NZ_CP049906	Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence	549656-549689	12	0.647

1. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to KJ538722 (Mycobacterium phage HH92, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

2. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to KT222940 (Mycobacterium phage Kinbote, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

3. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MH727549 (Mycobacterium phage Gancho, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

4. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MK919482 (Mycobacterium phage DeepSoil15, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

5. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MT657330 (Mycobacterium phage Webster2, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

6. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MF919517 (Mycobacterium phage LilHazelnut, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

7. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to EU203571 (Mycobacterium phage Giles, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

8. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MK494095 (Mycobacterium phage Daegal, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

9. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MT818421 (Mycobacterium phage Luke, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

10. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MH697577 (Mycobacterium phage Amochick, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

11. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MT684594 (Mycobacterium phage Hadrien, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

12. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MT114159 (Mycobacterium phage Ein37, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

13. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to KT246485 (Mycobacterium phage OBUpride, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

14. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to KT454972 (Mycobacterium phage Evanesce, complete genome) position: , mismatch: 4, identity: 0.871

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gaagggcgacaacgcccgcatcgccgaagcc	Protospacer
**  ***************.******* ***

15. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NC_016115 (Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence) position: , mismatch: 4, identity: 0.882

cgccggcaccgacttcaccgccggcggc--ggcctg	CRISPR spacer
cgccggcttcgacttcaccgccggcggctgggcc--	Protospacer
******* .*******************  ****

16. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to KR080200 (Mycobacterium phage AlanGrant, complete genome) position: , mismatch: 5, identity: 0.839

-gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cgcccagc-acaacgcccgcgttgccgacgcc	Protospacer
 * .*.** *************.*********

17. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to KR080194 (Mycobacterium phage Vincenzo, complete genome) position: , mismatch: 5, identity: 0.839

-gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cgcccagc-acaacgcccgcgttgccgacgcc	Protospacer
 * .*.** *************.*********

18. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MH509442 (Mycobacterium phage Aminay, complete genome) position: , mismatch: 5, identity: 0.839

gatcgg--cgacaacgcccgcgtcgccgacgcc	CRISPR spacer
--tcggttcgtcaacgcccgcgacgccgacgac	Protospacer
  ****  ** *********** ******** *

19. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP022193 (Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.839

cgtcg-gcgcgcgcagccagaccggcagcctg	CRISPR spacer
-gttgcgcgcgcgcagccaggccagcagccgg	Protospacer
 **.* **************.**.****** *

20. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NC_005284 (Burkholderia phage phi1026b, complete genome) position: , mismatch: 5, identity: 0.853

-cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
ccgccga-cgcggcggcatcgtgcgcggcgatcgc	Protospacer
 **.*** **********.*************  *

21. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to AF447491 (Bacteriophage phiE125, complete genome) position: , mismatch: 5, identity: 0.853

-cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
ccgccga-cgcggcggcatcgtgcgcggcgatcgc	Protospacer
 **.*** **********.*************  *

22. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to AY453853 (Bacteriophage phi1026b, complete genome) position: , mismatch: 5, identity: 0.853

-cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
ccgccga-cgcggcggcatcgtgcgcggcgatcgc	Protospacer
 **.*** **********.*************  *

23. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NC_003309 (Burkholderia phage phiE125, complete genome) position: , mismatch: 5, identity: 0.853

-cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
ccgccga-cgcggcggcatcgtgcgcggcgatcgc	Protospacer
 **.*** **********.*************  *

24. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 5, identity: 0.853

cgtcgaccgcggcggcaccgtgc-gcggcgatgtc	CRISPR spacer
cgtcgaccgcggcggctccgttcggcggcggtga-	Protospacer
**************** **** * ******.**

25. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 5, identity: 0.839

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
cctggtcgacaccggcgccaccggcggccat	Protospacer
**************.**.**********  .

26. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggcg---acaacgcccgcgtcgccgacgcc	CRISPR spacer
---cgacgcgcacaacgcccgcgtcttcgacgcc	Protospacer
   **.**   ************** .*******

27. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NC_020543 (Sphingomonas sp. MM-1 plasmid pISP2, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
tgtcggcgaaaacgcgcgcgtcgccgaccgc	Protospacer
 .******* ***** ************  *

28. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggcg---acaacgcccgcgtcgccgacgcc	CRISPR spacer
---cgacgcgcacaacgcccgcgtcttcgacgcc	Protospacer
   **.**   ************** .*******

29. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gatcgtcgacaacgcccgtgtcgcgttcggc	Protospacer
***** ************.*****   ** *

30. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggcg---acaacgcccgcgtcgccgacgcc	CRISPR spacer
---cgacgcgcacaacgcccgcgtcttcgacgcc	Protospacer
   **.**   ************** .*******

31. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggcg---acaacgcccgcgtcgccgacgcc	CRISPR spacer
---cgacgcgcacaacgcccgcgtcttcgacgcc	Protospacer
   **.**   ************** .*******

32. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggcg---acaacgcccgcgtcgccgacgcc	CRISPR spacer
---cgacgcgcacaacgcccgcgtcttcgacgcc	Protospacer
   **.**   ************** .*******

33. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.806

gatcggcg---acaacgcccgcgtcgccgacgcc	CRISPR spacer
---cgacgcgcacaacgcccgcgtcttcgacgcc	Protospacer
   **.**   ************** .*******

34. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
ctgcgccacgcgcagccagaccggcaggttg	Protospacer
*  ** *.******************* .**

35. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 6, identity: 0.806

cgtcggcgcgcgcagccagaccggcagcctg---	CRISPR spacer
cttcggcgcgcgcaacgagaccggca---tggac	Protospacer
* ************.* *********   **

36. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.806

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
ccgcggcgcgcgcagccagaacggctggttg	Protospacer
*  ***************** **** * .**

37. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 6, identity: 0.806

cgtcggcgcgcgcagccagaccggcagcctg---	CRISPR spacer
cttcggcgcgcgcaacgagaccggca---tggac	Protospacer
* ************.* *********   **

38. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 6, identity: 0.806

cgtcggcgcgcgcagccagaccggcagcctg---	CRISPR spacer
cttcggcgcgcgcaacgagaccggca---tggac	Protospacer
* ************.* *********   **

39. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 6, identity: 0.806

cgtcggcgcgcgcagccagaccggcagcctg---	CRISPR spacer
cttcggcgcgcgcaacgagaccggca---tggac	Protospacer
* ************.* *********   **

40. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 6, identity: 0.806

cgtcggcgcgcgcagccagaccggcagcctg---	CRISPR spacer
cttcggcgcgcgcaacgagaccggca---tggac	Protospacer
* ************.* *********   **

41. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

cgtcggcgcgcgcagccagaccggcagcctg---	CRISPR spacer
cttcggcgcgcgcaacgagaccggca---tggac	Protospacer
* ************.* *********   **

42. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NC_009956 (Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence) position: , mismatch: 6, identity: 0.824

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
tgccggcaacgacttcatcgccggcggcgccggg	Protospacer
.******* ********.*********** *  *

43. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 6, identity: 0.824

cgtcgaccgcggcggcaccgtgcgcggcgatgtc-	CRISPR spacer
ggtcgaccgcgccggcaccgtgcgcgccg-tgcag	Protospacer
 ********** ************** ** **.

44. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 6, identity: 0.824

cgtcgaccgcggcggcaccgtgcgcggcgatgtc-	CRISPR spacer
ggtcgaccgcgccggcaccgtgcgcgccg-tgcag	Protospacer
 ********** ************** ** **.

45. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to KT997827 (Uncultured Mediterranean phage uvDeep-CGR0-KM15-C219, complete genome) position: , mismatch: 6, identity: 0.806

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
tgtggtcgacaccgacgtcaccagcgggttg	Protospacer
. ********************.****  *

46. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NC_019957 (Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence) position: , mismatch: 6, identity: 0.806

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
cttgatcgacacccacgtcaccggcgactac	Protospacer
*.**.******** ************.*  *

47. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 6, identity: 0.806

--cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
ggcct--tcgtcaccgtcgtcaccggcggcgcc	Protospacer
  ***  *** ***** *************..*

48. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NC_010335 (Caulobacter sp. K31 plasmid pCAUL01, complete sequence) position: , mismatch: 7, identity: 0.774

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gatcggcgactacgcccgcttcgcccagatg	Protospacer
********** ******** ***** * ..

49. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MN813686 (Mycobacterium phage BirdsNest, complete genome) position: , mismatch: 7, identity: 0.774

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gctcggcgacatcgcccgcttcgccgagcag	Protospacer
* ********* ******* *******

50. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.774

gatcggcg---acaacgcccgcgtcgccgacgcc	CRISPR spacer
---cgaggcgcacaacgcccgcgtcttcgacgcc	Protospacer
   **. *   ************** .*******

51. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NC_002699 (Frankia sp. CpI1 plasmid pFQ12, complete plasmid sequence) position: , mismatch: 7, identity: 0.774

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
ggacacggccaacgcccgcgccgccgacgcc	Protospacer
*. *.  * ***********.**********

52. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP040763 (Paracoccus sp. 2251 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.774

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gcgcggcgacagcgcccgcgccgccgagatc	Protospacer
*  ********.********.****** ..*

53. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.774

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gctggtcggcaccgcccgcgtcgccgacgtg	Protospacer
* * * **.** *****************.

54. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NC_019790 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE02, complete sequence) position: , mismatch: 7, identity: 0.774

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cattcccaacaacgccctcgtcgccgacacc	Protospacer
 **.  *.********* **********.**

55. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gggtgtcgacaacgcccgcgtcaccaacgtc	Protospacer
*. .* ****************.**.***.*

56. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP049814 (Monaibacterium sp. ALG8 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.774

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gatcggcgacaatgcccgcatcgatatcggc	Protospacer
************.******.*** .. ** *

57. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
cttgagcgcgggcagccagaccggcagcgcc	Protospacer
* * .***** ***************** .

58. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 7, identity: 0.774

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
cttcggcgcgcgcgtccagaccggcaccgga	Protospacer
* ***********. *********** *  .

59. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to MN813686 (Mycobacterium phage BirdsNest, complete genome) position: , mismatch: 7, identity: 0.774

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
gatggtcccgagcagccagaccggcagcctc	Protospacer
 .* * * ** *******************

60. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 7, identity: 0.774

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
cttcggcgcgcgcgtccagaccggcaccggc	Protospacer
* ***********. *********** *

61. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.774

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
caccggcgcgggcagccagaacggcacgctt	Protospacer
*..******* ********* *****  **

62. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.774

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
caccggcgcgggcagccagaacggcacgctt	Protospacer
*..******* ********* *****  **

63. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.774

cgtcggcgcgcgcagccagaccgg--cagcctg	CRISPR spacer
cgtcggcgcgcgccgcctgaccgatccggtc--	Protospacer
************* *** *****.  *.*.*

64. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 7, identity: 0.774

cgtcggcgcgcgcagccagaccgg--cagcctg	CRISPR spacer
cgtcggcgcgcgccgcctgaccgatccggtc--	Protospacer
************* *** *****.  *.*.*

65. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 7, identity: 0.774

cgtcggcgcgcgcagccagaccgg--cagcctg	CRISPR spacer
cgtcggcgcgcgccgcctgaccgatccggtc--	Protospacer
************* *** *****.  *.*.*

66. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.774

cgtcggcgcgcgcagccagaccgg--cagcctg	CRISPR spacer
cgtcggcgcgcgccgcctgaccgatccggtc--	Protospacer
************* *** *****.  *.*.*

67. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 7, identity: 0.794

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
cgacaagcccgacttcatcgccggcggcgacctg	Protospacer
** *..  *********.***********.****

68. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 7, identity: 0.794

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
cgacaagcccgacttcatcgccggcggcgacctg	Protospacer
** *..  *********.***********.****

69. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to MN096362 (Arthrobacter phage Vibaki, complete genome) position: , mismatch: 7, identity: 0.794

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
cttcgacggcgacttcaccgacggcggcgggctg	Protospacer
* .**.*. *********** ********* ***

70. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 7, identity: 0.794

cgccggcaccgacttcaccgccggcggc--ggcctg	CRISPR spacer
gaccggcaccggctacaccgccggcggtcaggcc--	Protospacer
 .*********.** ************.  ****

71. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 7, identity: 0.794

cgccggcaccgacttcaccgccggc-ggcggcctg	CRISPR spacer
gaccggcaccggctacaccgccggcgggcaggct-	Protospacer
 .*********.** ********** ***.* **

72. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 7, identity: 0.794

--cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
cccgctg--accgatttcaccgccgacggcggcttc	Protospacer
  ***.*  *****.**********.*******.*

73. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NC_048046 (Caulobacter phage CcrPW, complete genome) position: , mismatch: 7, identity: 0.794

cgccggcaccgacttcaccgccggcggc--ggcctg	CRISPR spacer
cacgggcaccggctacaccgccggcggccagacc--	Protospacer
*.* *******.** *************  *.**

74. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to JX100810 (Caulobacter phage CcrColossus, complete genome) position: , mismatch: 7, identity: 0.794

cgccggcaccgacttcaccgccggcggc--ggcctg	CRISPR spacer
cacgggcaccggctacaccgccggcggccaagcc--	Protospacer
*.* *******.** *************  .***

75. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 7, identity: 0.794

cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
cgacctgcgcgccggcatcgtgcgcggcgatggc	Protospacer
** *   **** *****.************** *

76. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
ggatgattgcggcggcaccgcgcgcggcgatggc	Protospacer
 * .**..************.*********** *

77. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 7, identity: 0.794

cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
cgccgcgtccggcggcaccgtggtcggcgatgtc	Protospacer
**.**  . *************  **********

78. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP022416 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
cgcagacagcggcggcaccgtgcccggcagcgtc	Protospacer
**. *** *************** ****...***

79. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.774

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
gcagggcgacatcgacgtcaccggcggcgag	Protospacer
 * ** *****.****************.

80. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.774

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
gcagggcgacatcgacgtcaccggcggcgag	Protospacer
 * ** *****.****************.

81. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP024582 (Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

cctggtcgacaccgacgtcaccggcggcatc-	CRISPR spacer
gatggtcggcaccgtcgtcaccggc-gcgccg	Protospacer
  ******.***** ********** **..*

82. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 7, identity: 0.774

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
cgacgtcgtcacctacgtcaccggcggccgc	Protospacer
*   **** **** **************  *

83. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 7, identity: 0.774

cctggtcgacaccgacgtcaccggcggcatc-	CRISPR spacer
gatggtcggcaccgtcgtcaccggc-gcgccg	Protospacer
  ******.***** ********** **..*

84. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to AM419438 (Archaeal BJ1 virus complete genome) position: , mismatch: 7, identity: 0.774

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
cagtctcgacaccgacgtcacccgcggtctc	Protospacer
*    ***************** ****. **

85. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NC_008695 (Archaeal BJ1 virus, complete genome) position: , mismatch: 7, identity: 0.774

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
cagtctcgacaccgacgtcacccgcggtctc	Protospacer
*    ***************** ****. **

86. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.774

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
caacgccgacaccgacggcaccgacggcacc	Protospacer
*   *.*********** *****.*****.*

87. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP027299 (Streptomyces sp. SGAir0924 plasmid unnamed_5) position: , mismatch: 7, identity: 0.774

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
cctggtcgacaccggcatcaccgacctcgcc	Protospacer
**************.*.******.*  *..*

88. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 7, identity: 0.774

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
ggtgatcgacaccaacgtcaccggcaccctc	Protospacer
  **.********.***********. * **

89. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NC_023283 (Streptomyces sp. FR1 plasmid pFRL3, complete sequence) position: , mismatch: 7, identity: 0.774

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
ccgcagccacaccgacctcatcggcggcatc	Protospacer
**  . * ******** ***.**********

90. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to KF147891 (Pseudomonas phage PaBG, complete genome) position: , mismatch: 7, identity: 0.774

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
ccaaggatacaccaacatcaccggcggcatc	Protospacer
** .*   *****.**.**************

91. spacer 13.1|4379189|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP039902 (Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence) position: , mismatch: 8, identity: 0.742

cgtcggctccggcgaaagccaaggcacgctg	CRISPR spacer
tgtactgcccggcgaatgccaaggcacgctc	Protospacer
.**    .******** *************

92. spacer 13.1|4379189|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP039893 (Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence) position: , mismatch: 8, identity: 0.742

cgtcggctccggcgaaagccaaggcacgctg	CRISPR spacer
tgtactgcccggcgaatgccaaggcacgctc	Protospacer
.**    .******** *************

93. spacer 13.1|4379189|31|NZ_CP013141|CRISPRCasFinder matches to NZ_KY000025 (Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence) position: , mismatch: 8, identity: 0.742

cgtcggctccggcgaaagccaaggcacgctg	CRISPR spacer
tgtactgcccggcgaatgccaaggcacgctc	Protospacer
.**    .******** *************

94. spacer 13.1|4379189|31|NZ_CP013141|CRISPRCasFinder matches to NZ_KY000029 (Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence) position: , mismatch: 8, identity: 0.742

cgtcggctccggcgaaagccaaggcacgctg	CRISPR spacer
tgtactgcccggcgaatgccaaggcacgctc	Protospacer
.**    .******** *************

95. spacer 13.1|4379189|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

cgtcggctccggcgaaagccaaggcacgctg	CRISPR spacer
tcgctaccccggcggaagcccaggcacgctg	Protospacer
.  * .*.******.***** **********

96. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
ggaggcgcacaacgcccgcgtcttcgacgcc	Protospacer
*.  *   ************** .*******

97. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NC_030916 (Tsukamurella phage TPA4, complete genome) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cgaggagaacgacgcccgcgtcgccgacgcc	Protospacer
 .  *. .**.********************

98. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cgccagcgacatcgcccgcgtggccgacgaa	Protospacer
 ..*.****** ********* *******

99. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cgaaggcggcaacgcccgcgtcgccggcttc	Protospacer
 .  ****.*****************.* .*

100. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MH067971 (Arthrobacter sp. strain ANT_H40 plasmid pA40H2, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cggcaaccgcagcgcccgcgtcgccgacgcc	Protospacer
 . *..* .**.*******************

101. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to MH067977 (Arthrobacter sp. strain ANT_H8 plasmid pA8H1, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cggcaaccgcagcgcccgcgtcgccgacgcc	Protospacer
 . *..* .**.*******************

102. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cgaaggcggcaacgcccgcgtcgccggcttc	Protospacer
 .  ****.*****************.* .*

103. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cgaaggcggcaacgcccgcgtcgccggcttc	Protospacer
 .  ****.*****************.* .*

104. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cgaaggcggcaacgcccgcgtcgccggcttc	Protospacer
 .  ****.*****************.* .*

105. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP018865 (Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cggcaaccgcagcgcccgcgtcgccgacgcc	Protospacer
 . *..* .**.*******************

106. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cgaaggcggcaacgcccgcgtcgccggcttc	Protospacer
 .  ****.*****************.* .*

107. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cgaaggcggcaacgcccgcgtcgccggcttc	Protospacer
 .  ****.*****************.* .*

108. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP013298 (Arthrobacter sp. YC-RL1 plasmid unnamed 1, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cggcaaccgcagcgcccgcgtcgccgacgcc	Protospacer
 . *..* .**.*******************

109. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
tgaaggcggcaacgcccgcgtcgccggcttc	Protospacer
 .  ****.*****************.* .*

110. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
caccgccgacagcgcccgcgtcgccgaatat	Protospacer
 *.** *****.***************   .

111. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP013538 (Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
tgaaggcggcaacgcccgcgtcgccggcttc	Protospacer
 .  ****.*****************.* .*

112. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
tgaaggcggcaacgcccgcgtcgccggcttc	Protospacer
 .  ****.*****************.* .*

113. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gtgcggcgacaacgcgcgcctcgccgccttg	Protospacer
*  ************ *** ****** * .

114. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gtgcggcgacaacgcgcgcctcgccgccttg	Protospacer
*  ************ *** ****** * .

115. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP017427 (Methylobacterium sp. XJLW plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
ccacctctacatcgcccgcgacgccgacgcc	Protospacer
   *  * *** ******** **********

116. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gtgcggcgacaacgcgcgcctcgccgccttg	Protospacer
*  ************ *** ****** * .

117. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gtgcggcgacaacgcgcgcctcgccgccttg	Protospacer
*  ************ *** ****** * .

118. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to JN698995 (Mycobacterium phage Dori, complete genome) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
ctatggcggcaacgcccgcggcgccgagggc	Protospacer
   .****.*********** ****** * *

119. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to KY555144 (Caulobacter phage Ccr5, complete genome) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
ctgggccgacaccgcccgcgtcgccaacgtc	Protospacer
    * ***** *************.***.*

120. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gtgcggcgacaacgcgcgcctcgccgccttg	Protospacer
*  ************ *** ****** * .

121. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gtgcggcgacaacgcgcgcctcgccgccttg	Protospacer
*  ************ *** ****** * .

122. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gtgcggcgacaacgcgcgcctcgccgccttg	Protospacer
*  ************ *** ****** * .

123. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gtgcggcgacaacgcgcgcctcgccgccttg	Protospacer
*  ************ *** ****** * .

124. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP014598 (Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cagtttcgacaccgcccgcatcgccgacgtc	Protospacer
 * .  ***** *******.*********.*

125. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP039640 (Azospirillum sp. TSH100 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cgcccccaacgacgcccgcatcgccgacgcc	Protospacer
 ..*  *.**.********.***********

126. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NC_048729 (Mycobacterium phage Renaud18, complete genome) position: , mismatch: 8, identity: 0.742

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
gttcgacgccaacgcccgcgtcgccacagag	Protospacer
* ***.** ****************.  *

127. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP017947 (Bosea sp. Tri-49 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
ggccgccgcgcgccgccagaccggcatggtc	Protospacer
 *.** ******* ************   *

128. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
cgtcggcgcgttcagccagaccgcgcccgcg	Protospacer
**********. ***********    * .*

129. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 8, identity: 0.742

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
ggccggcgcgcgctgccagcccggcaaacga	Protospacer
 *.********** ***** ******. * .

130. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to MT855965 (Microcystis phage vB_MaeS-yong1, complete genome) position: , mismatch: 8, identity: 0.742

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
cggcggcgcgcgcagcctgaccgatgcgttg	Protospacer
** ************** *****...  .**

131. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 8, identity: 0.765

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gcccggcaccggcttcaccgtcggcgaccgtgtg	Protospacer
  *********.********.*****.* *. **

132. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 8, identity: 0.765

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
ggtcttcgccgacttcaccccccgcggcggccgg	Protospacer
 *.*  *.*********** ** ********* *

133. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to MN234213 (Gordonia phage Schiebs, complete genome) position: , mismatch: 8, identity: 0.765

-cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
ccaacgac-ccgacggcaccgccggcggcggccac	Protospacer
 *. **.* *****  *****************

134. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 8, identity: 0.765

cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
cgacctgcgcgccggcatcgtgcgcggcgatcgc	Protospacer
** *   **** *****.*************  *

135. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to MK737944 (Microbacterium phage Warren, complete genome) position: , mismatch: 8, identity: 0.765

cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
ggtcgacgtcggcggcaccgtgcgcggcttcgag	Protospacer
 ******  *******************  .*

136. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 8, identity: 0.765

--cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
gcagccg--cgcggcggcaccgtgcgccacgatgcg	Protospacer
   *.**  ****************** .*****.

137. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP050099 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence) position: , mismatch: 8, identity: 0.765

cgtcgac--cgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
--ccagccgcgcggcggcaccgtgcgccacgatgcc	Protospacer
  .*..*  ****************** .*****.*

138. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 8, identity: 0.765

cgtcgac--cgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
--ccagccgcgcggcggcaccgtgcgccacgatgcc	Protospacer
  .*..*  ****************** .*****.*

139. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP011450 (Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence) position: , mismatch: 8, identity: 0.765

cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
cctcgacctcgccggcaccgtgcgcgccagcgtg	Protospacer
* ****** ** ************** *...**

140. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 8, identity: 0.742

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
gctggtcgtcaccgacgacaccggccgttcg	Protospacer
 ******* ******** ******* *. .

141. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.742

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
cctggtcgacgccgacgtcgccgaagttgcc	Protospacer
**********.********.***. * ...*

142. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP026653 (Streptomyces dengpaensis strain XZHG99 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
cgccgtcgacgccggcgtcaccggcggccgt	Protospacer
* . ******.***.*************  .

143. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 8, identity: 0.742

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
actggccgacatcgacgtcaccggcttcgag	Protospacer
 ****.*****.*************  *.

144. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to MT855965 (Microcystis phage vB_MaeS-yong1, complete genome) position: , mismatch: 8, identity: 0.742

cctggt----cgacaccgacgtcaccggcggcatc	CRISPR spacer
----gtaccgcgccaccgaagtcaccggcggcaag	Protospacer
    **    ** ****** *************

145. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to MF042361 (Pseudomonas phage Skulduggery, complete genome) position: , mismatch: 8, identity: 0.742

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
catccgcgacaccgacgggaccggcggcaag	Protospacer
* *   ***********  **********

146. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP032692 (Rhizobium sp. CCGE532 plasmid pRCCGE532b, complete sequence) position: , mismatch: 8, identity: 0.742

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
ggcgctcgacgccgacgtcaccgtcggcgac	Protospacer
  .* *****.************ ****. *

147. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 8, identity: 0.742

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
acgcgccgacatcgacgtcaccgccggcacg	Protospacer
 *  *.*****.*********** *****.

148. spacer 13.1|4379189|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 9, identity: 0.71

cgtcggctccggcgaaagccaaggcacgctg	CRISPR spacer
gtattacttcggcgaaggccaaggcacgccg	Protospacer
   . .**.*******.************.*

149. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 9, identity: 0.71

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
cgcgcccgacgacgcccgcgtcgccgatgcg	Protospacer
 ..   ****.****************.**

150. spacer 13.2|4379243|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.71

gatcggcgacaacgcccgcgtcgccgacgcc	CRISPR spacer
ctacggcgacaacgcccgcatcgacgagttt	Protospacer
   ****************.*** ***  ..

151. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to MN234161 (Gordonia phage Toast, complete genome) position: , mismatch: 9, identity: 0.71

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
gaaggtcgcgcgccgccagcccggcagccgc	Protospacer
 .  * ******* ***** *********

152. spacer 13.3|4379297|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 9, identity: 0.71

cgtcggcgcgcgcagccagaccggcagcctg	CRISPR spacer
gttcggcgcgctcagccagagcggcgtcggc	Protospacer
  ********* ******** ****. *

153. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP050126 (Rhodococcus erythropolis strain KB1 plasmid plas2, complete sequence) position: , mismatch: 9, identity: 0.735

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gtccggcaccggctacaccgccggcggtgcaacg	Protospacer
  *********.** ************.*   .*

154. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 9, identity: 0.735

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
cctgggcaccgatttcaccggcggcggcatgccg	Protospacer
* . ********.******* *******.  *.*

155. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NC_017965 (Advenella kashmirensis WT001 plasmid pWTk445, complete sequence) position: , mismatch: 9, identity: 0.735

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gccccaccccggcttcaccgccgacggcggcccc	Protospacer
  ** .* ***.***********.********.

156. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 9, identity: 0.735

cgtcgac--cgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
--ccagccgcgcggcggcaccgtgcgccacgatgcg	Protospacer
  .*..*  ****************** .*****.

157. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 9, identity: 0.735

cgtcgac--cgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
--ccagccgcgcggcggcaccgtgcgccacgatgcg	Protospacer
  .*..*  ****************** .*****.

158. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 9, identity: 0.735

cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
ccccgaccgcggcgtcgccgtgcgcggacccgac	Protospacer
* .*********** *.**********   .* *

159. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 9, identity: 0.735

cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
ttccgcgctcggcgtcaccgttcgcggcgatgtt	Protospacer
. .**  * ***** ****** ***********.

160. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP049749 (Rhodococcus fascians A21d2 plasmid pA21d2, complete sequence) position: , mismatch: 9, identity: 0.71

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
cagggtcgacaccgacgacgccggcgatcgt	Protospacer
*  ************** *.******..  .

161. spacer 13.1|4379189|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 10, identity: 0.677

cgtcggctccggcgaaagccaaggcacgctg	CRISPR spacer
tcgcggctccggcgaaaccgaaggcaaagat	Protospacer
.  ************** * ****** .

162. spacer 13.1|4379189|31|NZ_CP013141|CRISPRCasFinder matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 10, identity: 0.677

cgtcggctccggcgaaagccaaggcacgctg	CRISPR spacer
tcgcggctccggcgaaaccgaaggcaaagat	Protospacer
.  ************** * ****** .

163. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to MN369749 (Mycobacterium phage MinionDave, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

164. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to MH744415 (Mycobacterium phage ArcusAngelus, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

165. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to MN585973 (Mycobacterium phage StAnnes, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

166. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to MH590598 (Mycobacterium phage Krakatau, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

167. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to KM101124 (Mycobacterium phage Squirty, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcaca	Protospacer
 .************  ***********   * ..

168. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to MH651178 (Mycobacterium phage KristaRAM, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

169. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to MH669001 (Mycobacterium phage EleanorGeorge, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

170. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NC_009820 (Mycobacterium phage Tweety, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

171. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NC_021301 (Mycobacterium phage SiSi, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

172. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to KR824843 (Mycobacterium phage Ovechkin, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

173. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to HQ728524 (Mycobacterium phage Wee, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

174. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to JN020142 (Mycobacterium phage Mutaforma13, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

175. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NC_042323 (Mycobacterium virus Mozy, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

176. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NC_022056 (Mycobacterium phage Hamulus, complete genome) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gaccggcaccgactggaccgccggcggattcact	Protospacer
 .************  ***********   * .

177. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
ggcctgcaccgacttctccgccggcaccaccacc	Protospacer
 *** *********** ********. *. * .

178. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP015597 (Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence) position: , mismatch: 10, identity: 0.706

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
ggtgcgtaccgacaccaccgccggcggcggcggc	Protospacer
 *.  *.****** .****************

179. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to MG962374 (Mycobacterium phage Paola, complete genome) position: , mismatch: 10, identity: 0.677

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
tgtggtcgacaccgacgacaccgggaatgca	Protospacer
. *************** ****** .....

180. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to KX585251 (Mycobacterium phage Waterfoul, complete genome) position: , mismatch: 10, identity: 0.677

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
tgtggtcgacaccgacgacaccgggaatgca	Protospacer
. *************** ****** .....

181. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to MH051255 (Mycobacterium phage Leston, complete genome) position: , mismatch: 10, identity: 0.677

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
tgtggtcgacaccgacgacaccgggaatgca	Protospacer
. *************** ****** .....

182. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to KX636165 (Mycobacterium phage Gengar, complete genome) position: , mismatch: 10, identity: 0.677

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
tgtggtcgacaccgacgacaccgggaatgca	Protospacer
. *************** ****** .....

183. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to MF185720 (Mycobacterium phage Guillsminger, complete genome) position: , mismatch: 10, identity: 0.677

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
tgtggtcgacaccgacgacaccgggaatgca	Protospacer
. *************** ****** .....

184. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to NC_024366 (Mycobacterium phage OkiRoe, complete genome) position: , mismatch: 10, identity: 0.677

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
tgtggtcgacaccgacgacaccgggaatgca	Protospacer
. *************** ****** .....

185. spacer 13.6|4379465|31|NZ_CP013141|CRISPRCasFinder matches to MH576966 (Mycobacterium phage Thyatira, complete genome) position: , mismatch: 10, identity: 0.677

cctggtcgacaccgacgtcaccggcggcatc	CRISPR spacer
tgtggtcgacaccgacgacaccgggaatgca	Protospacer
. *************** ****** .....

186. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gctgggcaacggcttcaccgccggcggcccgtcg	Protospacer
  . **** **.****************   ..*

187. spacer 13.4|4379351|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 12, identity: 0.647

cgccggcaccgacttcaccgccggcggcggcctg	CRISPR spacer
gctgggcaacggcttcaccgccggcggcccgtcc	Protospacer
  . **** **.****************   ..

188. spacer 13.5|4379408|34|NZ_CP013141|CRISPRCasFinder matches to NZ_CP049906 (Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

cgtcgaccgcggcggcaccgtgcgcggcgatgtc	CRISPR spacer
tcacgagcgcggcgccaccgtgcgcgggcgcaaa	Protospacer
.  *** ******* ************  ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1955920 : 2020526

Bacillus_phage(16.67%)

plate,protease,tRNA,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057971275.1\|1955920_1959079_-\|plate	putative baseplate assembly protein	J9PV89	Bacillus_phage	6.7e-16	30.2
WP_057971276.1\|1959075_1961586_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_031372326.1\|1961605_1961962_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_057971277.1\|1961990_1962350_-	hypothetical protein	NA	NA	NA	NA
WP_031372328.1\|1962360_1962903_-\|plate	baseplate assembly protein	A0A1J0GW39	Streptomyces_phage	1.5e-05	32.0
WP_057971278.1\|1962899_1964027_-	hypothetical protein	NA	NA	NA	NA
WP_057918131.1\|1964030_1964354_-	hypothetical protein	NA	NA	NA	NA
WP_057971279.1\|1964420_1965074_-	hypothetical protein	NA	NA	NA	NA
WP_144436406.1\|1965098_1965878_-	hypothetical protein	NA	NA	NA	NA
WP_144436407.1\|1965877_1966513_-	hypothetical protein	NA	NA	NA	NA
WP_057971281.1\|1966619_1967333_-	hypothetical protein	NA	NA	NA	NA
WP_057971282.1\|1967329_1969882_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_057918125.1\|1969878_1970139_-	hypothetical protein	NA	NA	NA	NA
WP_057973108.1\|1970135_1972223_-	ATP-binding protein	A0A2D2W2C3	Stenotrophomonas_phage	1.7e-07	41.4
WP_057971283.1\|1972249_1973533_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_057971284.1\|1973529_1974483_-	hypothetical protein	NA	NA	NA	NA
WP_057971285.1\|1974479_1975262_-	hypothetical protein	NA	NA	NA	NA
WP_031372341.1\|1975258_1975783_-\|tail	phage tail protein	NA	NA	NA	NA
WP_057973109.1\|1975813_1977721_-\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	2.6e-39	34.9
WP_057918120.1\|1977749_1978016_-	hypothetical protein	NA	NA	NA	NA
WP_057973110.1\|1978234_1979224_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_057971286.1\|1979627_1980650_+	N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	NA	NA	NA	NA
WP_057971287.1\|1980658_1981387_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_057971288.1\|1982811_1985712_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	4.0e-116	31.6
WP_082638396.1\|1985790_1988268_+	glycoside hydrolase family 92 protein	NA	NA	NA	NA
WP_057971289.1\|1988561_1990985_+	family 20 glycosylhydrolase	A0A2H4UUW7	Bodo_saltans_virus	1.2e-09	26.0
WP_057971290.1\|1991145_1994052_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	8.9e-124	33.0
WP_057973112.1\|1994387_1996988_+	glycoside hydrolase family 2 protein	NA	NA	NA	NA
WP_144436747.1\|1997514_2000289_+	DUF2135 domain-containing protein	NA	NA	NA	NA
WP_144436410.1\|2000524_2001652_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	1.2e-07	44.8
WP_057918115.1\|2002049_2003567_+\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	6.6e-86	39.5
WP_031372280.1\|2003850_2004909_+	two-component system response regulator	NA	NA	NA	NA
WP_057971291.1\|2004912_2007081_+	response regulator	A0A1V0SGX0	Hokovirus	7.0e-49	32.0
WP_057918113.1\|2007129_2008041_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_057971292.1\|2008284_2009958_-	long-chain fatty acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.3e-31	30.4
WP_144436411.1\|2010300_2010711_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_057971293.1\|2010852_2013648_-	aconitate hydratase AcnA	NA	NA	NA	NA
WP_057971294.1\|2014059_2016648_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_031372287.1\|2017266_2017875_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_057918109.1\|2017874_2019005_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_082638399.1\|2019010_2019568_-	NUDIX hydrolase	NA	NA	NA	NA
WP_082638400.1\|2019506_2020049_-	hypothetical protein	NA	NA	NA	NA
WP_031372291.1\|2020205_2020526_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	7.2e-11	42.4

DBSCAN-SWA_2

4054284 : 4066105

Pseudomonas_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082638753.1\|4054284_4056498_-	hypothetical protein	Q5ZQV9	Pseudomonas_phage	5.4e-206	51.6
WP_057919628.1\|4056484_4056706_-	hypothetical protein	H6V8R0	Pseudomonas_phage	3.1e-13	52.8
WP_082639033.1\|4056702_4056933_-	hypothetical protein	Q6UYJ6	Burkholderia_phage	1.9e-21	64.9
WP_057972219.1\|4056955_4057771_-	DUF2163 domain-containing protein	K4I436	Providencia_phage	1.8e-61	41.5
WP_057972220.1\|4057767_4059477_-	hypothetical protein	Q5ZQW3	Pseudomonas_phage	1.4e-137	52.1
WP_057972221.1\|4059487_4060423_-	hypothetical protein	A0A0S0MVP2	Pseudomonas_phage	3.1e-22	28.0
WP_144436564.1\|4060422_4062000_-	hypothetical protein	A0A2D2W2B4	Stenotrophomonas_phage	3.7e-108	40.3
WP_144436565.1\|4062281_4062470_+	hypothetical protein	NA	NA	NA	NA
WP_057972223.1\|4062763_4066105_-	tape measure protein	A0A2D1GNK1	Pseudomonas_phage	8.9e-43	29.7

DBSCAN-SWA_3

4069379 : 4079999

Wolbachia_phage(33.33%)

capsid,terminase,portal,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057972227.1\|4069379_4069856_-	glycoside hydrolase family 104 protein	A0A1W6JT17	Escherichia_phage	6.0e-38	51.6
WP_057972228.1\|4069836_4070058_-	hypothetical protein	NA	NA	NA	NA
WP_144436568.1\|4070239_4070623_-	hypothetical protein	NA	NA	NA	NA
WP_057972230.1\|4070673_4071432_-	hypothetical protein	A0A0S4L1I6	Pseudomonas_phage	2.9e-58	47.3
WP_169795684.1\|4071482_4071821_-	hypothetical protein	NA	NA	NA	NA
WP_057972232.1\|4072030_4072432_-	hypothetical protein	NA	NA	NA	NA
WP_057972233.1\|4072451_4072745_-	hypothetical protein	NA	NA	NA	NA
WP_057973234.1\|4072741_4073743_-\|capsid	major capsid protein	A0A1B2LRS0	Wolbachia_phage	8.1e-117	69.4
WP_057972234.1\|4073752_4074145_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	5.9e-23	51.2
WP_057972235.1\|4074146_4075331_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	6.3e-68	43.2
WP_057972236.1\|4075327_4076824_-\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	1.1e-141	55.5
WP_057972237.1\|4076823_4077042_-	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	4.4e-12	59.4
WP_057972238.1\|4077142_4077436_-	hypothetical protein	NA	NA	NA	NA
WP_057972239.1\|4077500_4079447_-\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	1.3e-259	68.3
WP_057972240.1\|4079450_4079999_-	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	5.7e-48	58.2

DBSCAN-SWA_4

4088394 : 4098130

Acidithiobacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082639034.1\|4088394_4089624_-	site-specific DNA-methyltransferase	K4HZA5	Acidithiobacillus_phage	3.5e-154	66.9
WP_082638757.1\|4089961_4090903_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_057972253.1\|4091033_4091462_-	hypothetical protein	NA	NA	NA	NA
WP_057972254.1\|4091454_4091664_-	hypothetical protein	NA	NA	NA	NA
WP_057972255.1\|4091660_4092170_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	5.3e-48	64.5
WP_057972256.1\|4092255_4094553_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	6.5e-279	62.4
WP_057972257.1\|4094549_4095284_-	PD-(D/E)XK nuclease family protein	K4HZA0	Acidithiobacillus_phage	1.9e-78	58.2
WP_144436572.1\|4095337_4095592_-	hypothetical protein	NA	NA	NA	NA
WP_144436573.1\|4095762_4095960_-	hypothetical protein	NA	NA	NA	NA
WP_057972259.1\|4095972_4096587_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	1.6e-51	51.7
WP_057973235.1\|4096602_4097430_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	2.1e-94	61.5
WP_057972260.1\|4097659_4098130_-	hypothetical protein	K4HZ96	Acidithiobacillus_phage	7.6e-25	43.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013141

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection