CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011131	Lysobacter gummosus strain 3.2.11 chromosome, complete genome	16 crisprs	csa3,WYL,cas3,DEDDh,Cas9_archaeal,DinG,RT	7	7	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011131_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_1

46331-46408

Orphan

Consensus_repeat	Method
GGAATCCAGAGCCTTAAGCGCCATC	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP011131_1

>merge|NZ_CP011131|1|46331-46408|CRISPRCasFinder
GGAATCCAGAGCCTTAAGCGCCATCTCCCCAGACCGTCATTCCCGCGAAGCAGGGAATCCAGAGCCTTTAGCGCCATC

>NZ_CP011131|1|1|46331-46408|CRISPRCasFinder
GGAATCCAGAGCCTTAAGCGCCATC	TCCCCAGACCGTCATTCCCGCGAAGCAG
GGAATCCAGAGCCTTTAGCGCCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_148648673.1\|37908_38664_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941086.1\|54609_55257_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP011131.1\|WP_083512828.1\|38697_40047_+\|transporter	unknown	unknown	gnl\|CDD\|379259
NZ_CP011131.1\|WP_148648674.1\|50478_51723_+\|NIPSNAP-family-protein	unknown	unknown	gnl\|CDD\|311781
NZ_CP011131.1\|WP_187313105.1\|46727_47261_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP011131.1\|WP_057941081.1\|49855_50461_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057945160.1\|55253_56381_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP011131.1\|WP_057941083.1\|51817_52513_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP011131.1\|WP_057941074.1\|40279_40657_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941076.1\|43774_44293_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378619
NZ_CP011131.1\|WP_057941085.1\|54009_54453_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_CP011131.1\|WP_083512182.1\|37131_37860_+\|C39-family-peptidase	unknown	unknown	gnl\|CDD\|239103
NZ_CP011131.1\|WP_057941084.1\|52980_53868_-\|RNA-polymerase-sigma-factor-SigJ	unknown	unknown	gnl\|CDD\|132002
NZ_CP011131.1\|WP_057941075.1\|42564_43620_-\|class-1-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236458
NZ_CP011131.1\|WP_083512186.1\|48179_49727_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182388
NZ_CP011131.1\|WP_187313104.1\|40131_40281_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941080.1\|47517_48183_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP011131.1\|WP_057941077.1\|44519_44957_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_083512183.1\|44989_46219_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP011131.1\|WP_057945157.1\|40653_41991_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_057941086.1\|54609_55257_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.44859e-64
NZ_CP011131.1\|WP_083512828.1\|38697_40047_+\|transporter	gnl\|CDD\|379259	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation.	0.000551516
NZ_CP011131.1\|WP_057941075.1\|42564_43620_-\|class-1-fructose-bisphosphatase	gnl\|CDD\|236458	PRK09293, PRK09293, class 1 fructose-bisphosphatase.	0
NZ_CP011131.1\|WP_187313105.1\|46727_47261_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.94525e-09
NZ_CP011131.1\|WP_057941085.1\|54009_54453_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	7.18702e-25
NZ_CP011131.1\|WP_057945160.1\|55253_56381_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.81178e-35
NZ_CP011131.1\|WP_057941083.1\|51817_52513_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.79139e-62
NZ_CP011131.1\|WP_057941076.1\|43774_44293_-\|hypothetical-protein	gnl\|CDD\|378619	pfam11268, DUF3071, Protein of unknown function (DUF3071). Some members in this family of proteins are annotated as DNA-binding proteins however this cannot be confirmed. Currently no function is known.	0.00105283
NZ_CP011131.1\|WP_083512182.1\|37131_37860_+\|C39-family-peptidase	gnl\|CDD\|239103	cd02423, Peptidase_C39G, A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are lacking the nucleotide-binding transporter signature.	1.46631e-54
NZ_CP011131.1\|WP_057941084.1\|52980_53868_-\|RNA-polymerase-sigma-factor-SigJ	gnl\|CDD\|132002	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.	7.13217e-94
NZ_CP011131.1\|WP_148648674.1\|50478_51723_+\|NIPSNAP-family-protein	gnl\|CDD\|311781	pfam07978, NIPSNAP, NIPSNAP. Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.	5.35761e-14
NZ_CP011131.1\|WP_083512186.1\|48179_49727_+\|hypothetical-protein	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	3.60318e-59
NZ_CP011131.1\|WP_057941080.1\|47517_48183_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.67803e-75
NZ_CP011131.1\|WP_083512183.1\|44989_46219_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP011131.1\|WP_057945157.1\|40653_41991_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	2.83128e-143

>NZ_CP011131.1|WP_083512183.1|44989_46219_+|DNA-polymerase-IV
MPACVRWRAQSIRGARHCRPTARPGYYAPSPRHQRTVSVSSRKILHVDMDAFYASVEQRDDPALRGQPVVVAWRGSRSVVCAASYEARKFGVRSAMPAVRAERLCPHAVFVPPDFVRYKAASRQVREIFERHTDLIEPLSLDEAYLDVTATKTGLPSATATAQAIRDAIREETRLTASAGVAPNKFVAKIASDWNKPDGLFVVKPHQVEAFLAPLPVGRLPGVGKVMEAKLAELGVQRVTDLRALGALALEQRFGRWGRRLHELAYGIDDHPVEPSRPTLQISSEDTFERDLPLSEVEADLRALAAKTWAGYQRELQRNPGRIARTVVLKLKTADFRILTRSLTPPHPPASEAELADLACGLRARVELPASTLYRLVGVGVSGFVEEDEAIAQSDLFDGGAVDEVLEGR
>NZ_CP011131.1|WP_057941077.1|44519_44957_+|hypothetical-protein
MPYTLTPAGNALAIAERQWAAAANVASAGDDTQPTIQFTGFSSCIGIAARNNDGTDVIGIHLAIDAADGTRFSGGDVATVINVLQAWDYDPLTTMVIGQISTWQGTIPAAFDQLIAALGNPRQFAYGDGVYGAGLNDANVLMPTF
>NZ_CP011131.1|WP_057941076.1|43774_44293_-|hypothetical-protein
MTSELRLQPPAAAAIAAHPCFTGLPPPDTDDFDSLCRFCEDHRVAVLASLPWVAAEVAGLSGFDAMLRLVLRHGGRRLYLPRDRLACSDRLEVPLDPATHRRLLDRASAAGTIEIPSAWGVFVGLRRVAIRAAVRAGRSQREVAQAFGVTERHLRREADSIHLSERARAAEN
>NZ_CP011131.1|WP_057941075.1|42564_43620_-|class-1-fructose-bisphosphatase
MSSVLSPSNTSISLTRYLIEEQRAGRINPDLRLLIEVVARACKTISIAVGKGALGGVLGDAGTPGAASMNIQGEAQKKLDVLSNEILLEANAWGGHLAGLASEEMDTSHPIPDVYPRGNYLLLFDPLDGSSNIDVNISVGTIFSVLRAPEGVTQAQDKDFLQPGTEQVCAGYTTYGPSTMLVLTIGNGTHAFTLDREVGSFVLTTRGMQIPDDTKEFAVNMSNQRHWQPPMQAYVTDLLAGKEGPRGKDFNMRWVASMVADVHRILTRGGIFSYPLDAKCEAQGGKLRLMYEANPMSFLVEQAGGAASTGRQRLLEVQPTGLHMRVPVFLGSKAEVETAVRYHHEFDAEQA
>NZ_CP011131.1|WP_057945157.1|40653_41991_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MHALAPLQNLGWTLRRAPDARAALRQLQSSPRLPHAVLIDLREGFDARDLEELGPALAAQNAGWIAGVASAQLDDEPARRLIRDYCYDYVTLPCPEAVLHTVIGHAYGMAALACGAGSADVLCSGGVDGMIGESEAIRALCRGLHKAASTDAPVFIAGETGTGKELAAMAVHRQSHRSRNPFIAINCGAIPHNLVQSELFGYERGAFTGAQQRKLGRIEMANGGTLFLDEIGDLPMESQASLLRFLQQGSIERLGGHEQIPVDVRIVSATHHDLDQAIADGRFRADLFHRLCVLRLQQPPLRERGGDIDLIADHALQRYAQETSRGIKGFSPCARQAMHRHPWPGNVRELINRVRQAVVMAEGRYITAADLHIDDAADGVPMTLEEARDLATREAIERALHRNRRRLGESARELGVSRVTLYRLMQRLGMRGGEEEIDDDAVRTA
>NZ_CP011131.1|WP_057941074.1|40279_40657_+|hypothetical-protein
MNLHWRLFVPTKTEPAARKLAARHFRRAQVEVSALTVAPYEKGGYKIQARREHATASWSDSVVAAIALAQRTGLGWSLNGLIIDELALWSTQASTPGIDAIEVVVHRIEPARTEAADEPGDPATA
>NZ_CP011131.1|WP_187313104.1|40131_40281_-|hypothetical-protein
MTAPTLPMQEQTNGSSAVLPDIAIVSGAILAPRRSATQLQLKSLQARVT
>NZ_CP011131.1|WP_083512828.1|38697_40047_+|transporter
MRAAHAPLYLALALALALSAPARAADDGGEAIEQQRAQFKSLHQRMLDMSRELDAQKAEIQQLRDQLGDLQLTQRGRGLSAPDGPQQELVGQDARDVAEQAKRKAAATAASDQDRDAPVQVGQTQRAEDAQRREQEKALVVREHAPLFERKFTLDTGLSYSYYDRRQLALSGFLALDAIFLGSINLDQTKASVATFELSGRYGLTDRISVEASLPYVYRDSRFVSGGAGGASSVVSEVRMRSQGVGDASVAAYYQWVKESQRWPDIVTSLRVRAPTGRDPFGLKLIQPDGDNNNLNIPENLPTGSGVWAATVNVSALRTYDPVILFGNVGYTYNQPTNFGDISPVAEQISPARVELGNAIQLSGGLAIALNDRSAVSFSVATSVTGATHITAPGGSKRRVPGSSSNSTTLNIGASYVLPSGWTINGQLAAGLTPDAPNFVFSMRGSKSF
>NZ_CP011131.1|WP_148648673.1|37908_38664_+|hypothetical-protein
MNRPSLPRALFSALLAAAAAAQPAVALPPLRADLVDEATLAKISGKYFGAQMLVGLRVDVVSSLNTPQQGAAMASGSLLVQRDGAGFAVSVDARSHAEAGSGGALPTNSSASGADAVQVRGIGQIAQIAGDGNRLSNLTSIGFVDQAQANTDASGFNGQSRSAASAGTMQARVTFLDGGVQVGIEGPGASIQQRLAAGAQGGIAQLGRIAGNGMDAGNRLQLQIVTAAMTPQLSRQLGLQQALDSLRALPR
>NZ_CP011131.1|WP_083512182.1|37131_37860_+|C39-family-peptidase
MSPIRTALLAALTVAALSGGARAQSAEERRTAVDVTRLTGNGTSPIVKPMRTLRDLRYRDLLHQRYDFSCGSAALASLLHYGYGLEVSEPELIKKMMIGVDPNEVVRNGFSMLDMKRYVESIGLRAHGFRIDADALYRLQMPVIALLDLKGYRHFVVVKGAAGGRVFVADPALGHRVMQEADFVRGWNGIVLAVVSDQPMRTDSYLVNNRSSPALQRRVDALDRATAPPRVVEFGLVIADLF
>NZ_CP011131.1|WP_187313105.1|46727_47261_-|GNAT-family-N-acetyltransferase
MKSQLAATPSAPAERGSVVLTVRPVLPADAPTLIALCDEHADSRALERRPYGPPRTDALELMEVLFEPPFGAWAWLAEVDGEVIGYASATAGFSMLERAYCLQLDDPYLRSAWRGRGVETELLRHALDAAQRFGCLNLQCQSPAWSEAARELDAPLRAVRVEAVKYVVRTESEVVAG
>NZ_CP011131.1|WP_057941080.1|47517_48183_+|response-regulator-transcription-factor
MKILLVEDDVMLAEAVRAGLTDDGWRVEWVGDAPQAKTALVDHDFDAVVLDVGLPGGSGLGVLSTLRNRYDATPVLIVTARDKLSERIAGLDAGADDYIVKPFQFDELCARLRAVMRRSQGRVSPVLSCGTVVLDPARRLVTRDGEPVALSGHEFRTLMLLLERQGRAVTREQLEEAVYGSSGTIESNTIAVYVHQLRRKLGEQLIVTVHGYGYRIGGGPA
>NZ_CP011131.1|WP_083512186.1|48179_49727_+|hypothetical-protein
MSALDGRNGASPAHAAQDESAGGRNGRDHDERRQRWHDHEQRRREWQQRCGHRESFAGGRSLRWKLTWVLIKTVLLAWFVWLACQVWQLSREHSGMLDNSLREIAEQVLASMPEGLERLPSRDPKRATEPVAADRKMSFQVWAQGRNVVYSAAAPLQPLNPTFKDGFARRLIGGEPWQVYTLTDHRRGLIVQVGRSKQMAIQELQGWIAGSLLAAGLILMLFGLATWKVIGRSLRPITALREILQQRPPLDLTPLPTQALPSEFRPLVDAFNNQLERVDAAVQHERRFISDAAHELRTPLAVLSTHAELALRATTLEEKNAALVRLNAGVQRSARLSEQLLDLARLDAGEESVRLKPLDLSDLIVLVIRDFETLARERRQRISLRAEPARLLGDVDQLGILLRNLIDNAVRHAGAEGQVAVTCAVHSSGAVVLSVADSGCGVSPEDCDRIFDRFYRAPGSPDGGSGIGLSLVARIAQTHGARIECGPGLERASDDPRGPGRGFEVRVQFPLAPAG
>NZ_CP011131.1|WP_057941081.1|49855_50461_+|hypothetical-protein
MDTTDVDKQRRTMLRLGAAAPLAALAGALPAEPAPPRAALKAPESAVADGRHDFDFYHGRWQVKNRRLAKRLAGSRDWIEFDATDECHPVLGGLGSVDHYLTDWNGGIEGFALRLYRPQTGQWHVYWASDRDGVLEAPLIGGFRDGVGVFEGQELHEGAMLPSRALWTDIRADSVRWEQALSPDGGKSWETNWVMHMTRLP
>NZ_CP011131.1|WP_148648674.1|50478_51723_+|NIPSNAP-family-protein
MNATPAAADGRHDFDFLHGRWQVHNERLRQRLSGSDDWEIFRARQTCEPVLGGLGNVDAFLSDWHRPGMADTFQGMTLRLFNLEHRHWSIWWAGSHDGVLEPPVVGVFEQGVGSFNGELEHEGRPVQARFIWSDISANTAHWHQEFSADGGRTWETNWHMWMHRSDEHGRLLHEDTTIELRQYRMNPGRRDDMIDLFEREFIESQEAVGMHLIGQFRDLDDADRYTWMRGFPGHALRAASLAAFYSGPTWRRHRDAANATLLDNDDVLMLKPARPGSGFAPAARAREPVGSREQSGEVVIAGICALNAPAQDGFLARFEREFAPLLGEGGAQWLATYVGDPSPNGYPRLPVREGEHVLVWFVRYPDEAAQREHAARLDTDPRWRAALAEALLGELKQAPQRLRLSPTARSELRA
>NZ_CP011131.1|WP_057941083.1|51817_52513_+|YafY-family-transcriptional-regulator
MRRADRLFLLIHALRGRRQAITAQQLAQTLEVSLRTVYRDVADLQRSGVPIEGEAGVGYLLRKGADIPPLMFNPDELEALVVGSRFVRAFGGERLGRSATAALLKIEAVLPPELRDRSARTRIFAPELENRIEASGLIDVLYGAVQGRQLLKLTYRDGEARASEREIEPLCLSFWGGSWTLGAWCRLREDYRSFRPDRIVAHVVTGETFADSRERGLDGYLRSVGAQGLER
>NZ_CP011131.1|WP_057941084.1|52980_53868_-|RNA-polymerase-sigma-factor-SigJ
MTAAEDNRLFAQTAPMLTGLAYRILGSRADAEDAVQDTFLKWQAADRAGIDNPGAWLTTACTRRCIDLLRSAHRTRVDYVGDWLPEPIHAETTGQPEEQLSLASSLSTAFLLLLERLTPKERAAYLLHEIFDQPYADVARILDIEEAACRKLVQRARSNVEQAKVRHVTPAEQQDRLLSAFETALVEGRTAPLAALLSEQIALHADGGGKVSAVARALHGRDAVLGFIESVLHPACREDRWMFVDLNGSRGVILEREGRIEAAMSFGYDEDDRLRDIYIMRNPDKLARLEAVKIR
>NZ_CP011131.1|WP_057941085.1|54009_54453_-|carboxymuconolactone-decarboxylase-family-protein
MSDTAPVKYERELPQLLTQLGGVESAIKNLADEEKLPPAIYHLIKLRASQINGCAYCVKMHTREARADGETNDRLDRLVVWRHAGDFSAAERAALAWTEALTTLDAAADYAPLRAELRAHYQERQIATMTAAIAMINLWNRLQVSKH
>NZ_CP011131.1|WP_057941086.1|54609_55257_-|response-regulator-transcription-factor
MSAQPKAPLRLALADDQMLVRAGLRALLERLGLHIVFEADDGQALLDGLAQSPVDVVLSDIRMPGLDGIDALTKLRERGDRTPVLLLTTFDDSDLLLRAAEAGAQGFLLKDAAPEDLREAIVRVAAGETLLQPVSTEPVRARYRYHADDAPRALFTEREVSVLRLMAGGYSNKEIARAMFLAEGTVKNYVSVILEKLDTRDRTRAVLKAITLRVI
>NZ_CP011131.1|WP_057945160.1|55253_56381_-|sensor-histidine-kinase
MTTLLRRTVLQPMNLPALLTWLAVALSLRYAGDRDAPILWLSMLTFAASFLAHDLLPERHRSWRAALFALETASALTVCWFASRGGAAPALLVVLIAHMTTAYPPRVLIALALAINLALYLILLYGGSPAPLVITVIFAGFESFAALIAHYARNAEQTRDRLALVNADLLATRALLADSARDAERLRMARELHDVAGHKLTAMMLNLRALAAEPDLAERREVQLAQQLAGELLGDIRGVVQALRDARGLDLATALRALAAPMPKPALDLTIDADIHLTDPALAETLLRVVQEALTNSARHAEAERVAVDIRRDGATLRMRIEDDGQARGPLREGNGLAGMRERIDAAGGTLALSRNRHGAMRIDASFPLNPARPA

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Crispr_ID: NZ_CP011131_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_2

521616-521859

Orphan

Consensus_repeat	Method
GATGCTGCCGTTGACCGTTTCCAGG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP011131_2

>merge|NZ_CP011131|2|521616-521859|CRISPRCasFinder
GATGCTGCCGTTGACCGTTTCCAGGTCGGCGGTGGCGGTCAGGTTGGTGCCGGCACGGATGCCGCCGTTGACCGTTTCCAGGCCGCCGGTCTGGGTGCTGGAACCGACGACGATGCCGCCGTTGACGGTCTGGACGTCTTCGACCCGGGCGTTGTCGCCGACCTTGATGCTGCCGTTGACGGTCTCCAGGTCGCCGCGGCGTTCGCTGGAGCCTACCGAGATGCTGCCGTTGACCTTGCTGATG

>NZ_CP011131|2|2|521616-521859|CRISPRCasFinder
GATGCTGCCGTTGACCGTTTCCAGG	TCGGCGGTGGCGGTCAGGTTGGTGCCGGCACG
GATGCCGCCGTTGACCGTTTCCAGG	CCGCCGGTCTGGGTGCTGGAACCGACGAC
GATGCCGCCGTTGACGGTCTGGACG	TCTTCGACCCGGGCGTTGTCGCCGACCTT
GATGCTGCCGTTGACGGTCTCCAGG	TCGCCGCGGCGTTCGCTGGAGCCTACCGA
GATGCTGCCGTTGACCTTGCTGATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_083512250.1\|525271_526711_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP011131.1\|WP_057941389.1\|530812_531067_+\|DUF2164-domain-containing-protein	unknown	unknown	gnl\|CDD\|378315
NZ_CP011131.1\|WP_057941385.1\|527064_527382_-\|DUF1820-family-protein	unknown	unknown	gnl\|CDD\|226900
NZ_CP011131.1\|WP_148649157.1\|518981_520709_-\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP011131.1\|WP_057941381.1\|517647_518394_-\|2OG-Fe-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|370779
NZ_CP011131.1\|WP_057941386.1\|527532_528228_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP011131.1\|WP_057941383.1\|522186_523722_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP011131.1\|WP_057941377.1\|504566_505976_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341039
NZ_CP011131.1\|WP_057941391.1\|531924_532311_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_083512249.1\|509696_510965_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP011131.1\|WP_057941390.1\|531201_531654_-\|DUF3574-domain-containing-protein	unknown	unknown	gnl\|CDD\|371896
NZ_CP011131.1\|WP_057941382.1\|518439_518829_-\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|226211
NZ_CP011131.1\|WP_187313120.1\|506093_506432_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941387.1\|528494_529874_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|367457
NZ_CP011131.1\|WP_057941376.1\|503803_504577_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197336
NZ_CP011131.1\|WP_057941384.1\|523721_524987_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP011131.1\|WP_083512248.1\|503171_503747_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP011131.1\|WP_057941379.1\|508074_509547_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP011131.1\|WP_057941388.1\|530042_530741_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP011131.1\|WP_187313121.1\|506533_507676_-\|anhydro-N-acetylmuramic-acid-kinase	unknown	unknown	gnl\|CDD\|236579

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_083512250.1\|525271_526711_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.99701e-121
NZ_CP011131.1\|WP_057941389.1\|530812_531067_+\|DUF2164-domain-containing-protein	gnl\|CDD\|378315	pfam09932, DUF2164, Uncharacterized conserved protein (DUF2164). This domain, found in various hypothetical prokaryotic proteins, has no known function.	4.66836e-25
NZ_CP011131.1\|WP_057941385.1\|527064_527382_-\|DUF1820-family-protein	gnl\|CDD\|226900	COG4517, COG4517, Uncharacterized protein conserved in bacteria [Function unknown].	5.39257e-46
NZ_CP011131.1\|WP_148649157.1\|518981_520709_-\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	1.143e-105
NZ_CP011131.1\|WP_057941381.1\|517647_518394_-\|2OG-Fe-dioxygenase-family-protein	gnl\|CDD\|370779	pfam10014, 2OG-Fe_Oxy_2, 2OG-Fe dioxygenase. This family contains 2-oxoglutarate (2OG) and Fe-dependent dioxygenases. It includes L-isoleucine dioxygenase (IDO).	9.46996e-84
NZ_CP011131.1\|WP_057941386.1\|527532_528228_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	3.46402e-24
NZ_CP011131.1\|WP_057941383.1\|522186_523722_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP011131.1\|WP_057941377.1\|504566_505976_+\|MFS-transporter	gnl\|CDD\|341039	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily. AmpG acts as an inner membrane permease in the beta-lactamase induction system and in peptidoglycan recycling. It transports meuropeptide from the periplasm into the cytosol in gram-negative bacteria, which is essential for the induction of the ampC encoding beta-lactamase. The AmpG family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.01864e-103
NZ_CP011131.1\|WP_083512249.1\|509696_510965_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP011131.1\|WP_057941390.1\|531201_531654_-\|DUF3574-domain-containing-protein	gnl\|CDD\|371896	pfam12098, DUF3574, Protein of unknown function (DUF3574). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.	6.34418e-44
NZ_CP011131.1\|WP_057941382.1\|518439_518829_-\|MAPEG-family-protein	gnl\|CDD\|226211	COG3686, COG3686, Predicted membrane protein [Function unknown].	1.04354e-27
NZ_CP011131.1\|WP_057941387.1\|528494_529874_+\|TonB-dependent-receptor	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	8.69135e-108
NZ_CP011131.1\|WP_057941376.1\|503803_504577_+\|exodeoxyribonuclease-III	gnl\|CDD\|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	2.86515e-143
NZ_CP011131.1\|WP_057941384.1\|523721_524987_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	1.8507e-88
NZ_CP011131.1\|WP_083512248.1\|503171_503747_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.83681e-08
NZ_CP011131.1\|WP_057941379.1\|508074_509547_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	3.29556e-45
NZ_CP011131.1\|WP_057941388.1\|530042_530741_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	3.15626e-84
NZ_CP011131.1\|WP_187313121.1\|506533_507676_-\|anhydro-N-acetylmuramic-acid-kinase	gnl\|CDD\|236579	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed.	0

>NZ_CP011131.1|WP_148649157.1|518981_520709_-|M28-family-peptidase
MVAAALVLSACNKPAGTADAPKPAEPAAQQTAAPGDHAFDAAINAADFAQHVKVLASDEFEGRAPGSAGEEKTVQYLEAQFKRLGLKPGNGDSYFQTVPMVETTADETTSLKLDVKGQARELKFGSDMVVGTRTGQPEVKIDGSDLVFVGYGVNAPEQQWNDYAGVDVKGKTVVMFVNDPGFHGQDATLFEGKRMTYYGRWTYKFEEAARQGAKAALIIHDTAGASYGWEVVKNSWSGAQFDLPAKDDPEPRLPVQGWITNEAARKLLGDLGQNLDQLYQAAGKRGFKAIALQAKASVDLKSKISQKSSRNVIARLDGAKRPDEAIVYMAHWDHLGNHTGEGGHEGHGADAKTTGPDTIYNGAVDNASGVAGILEIAEAFTRQTPPPDRSLLFLAVTLEESGLLGSKYYVAHPTVPLNKTVAVINLDAMPIIGKARDMTVVGYGSSELEDILKTVADGQQRVLHAEGTPQDGFYFRSDHFNFAKAGVPALYAKGGDDLLDGGVEAGQKAQIDYRDNRYHKPADQFDPAWKLDGVVQDLDALYGVGKALAGNEQWPNWYEGNAFRAAHDKLMAPAK
>NZ_CP011131.1|WP_057941382.1|518439_518829_-|MAPEG-family-protein
MTIAYWCLLIAALMPYLWVAVAKANGKRYDNRAPRAWQARQDDPRSNAAYAAHLNAFEAFAPFAAGVLAAQMAGVDTNWIVILSIVFVICRVLHGVFYIAGKAPLRSLVWAIGFLCVVALLTLAALAAI
>NZ_CP011131.1|WP_057941381.1|517647_518394_-|2OG-Fe-dioxygenase-family-protein
MPPAPIFDHDEFAQSLRDDGFRFVAGEDMRTHLQEHGSLQDWNVFADSWNDLAPDAYLARVGQQRRRRHAIFRAGREGAIERRPHQPHYQSLSYNTLQGDIERWFEPVRDDIAQSQTLGTVLAFCRDFFSALAPQTPAWHIELHQFRIEARSDQDGQPTPEGVHRDGVDYVLVLLIDRHNIVSGTTTIHDGDRRLLGSFTLTAPLDAALVDDARVFHGVTAVTPLDPEREAHRDVLVVTFRADGTPAS
>NZ_CP011131.1|WP_083512249.1|509696_510965_+|tyrosine--tRNA-ligase
MALTKAGRGRTRVQPLNSASPSVQEALDLIARGADEILKREELEARLKLGRPLRIKAGFDPTAPDLHIGHTVLLNKMRQFQDLGHQVIFLIGDFTGMIGDPSGKNVTRKPLTREDVLANAETYAEQVFKVLDKERTEVRFNSEWFSQMSAADMIRLAGQHTVARMLERDDFAKRYAAQQSIAIHEFLYPLVQGYDSVALKCDVELGGTDQKFNLLMGRGLQEHHGLPPQIVLTMPLLEGLDGVNKMSKSLGNYIGINEPAIDIVTKTMKIDDVLMWRWIDLLSFEIGIAEAASLKKEIEAGQLNPRDLKLRLARELAARFHGSEAAETAVAGWNAAVRGEGDITSLPLTDVAVPAEGLRIAALLVAAGLTPSNGEGNRKLKERAVRVDGNVVEDPQLVFAPGFEGVLAVGKRNFARVRLVSA
>NZ_CP011131.1|WP_057941379.1|508074_509547_-|M23-family-metallopeptidase
MTVPEQASSVGAERRERLKALREAALKRPVLARHLSDGFNGRWTGRQWVQAGLFATLGMMVAAIVPGLSQSTASVRAHEPRQSLALALPPLTLARLKGETGDSWQLVRVNRGQTLGSVFKEMEIPTSTMHQILEQPGAKEALMRMKPGTELGFDMPVNGALRTFRYDKDDSHRVELSLTGDKITQKVINRPTETRTVVLSGKVGKSLFRSARKVGLTAANINTLTDDIFKYDIDFNEDVGAEDRFSVVVEQTWREGELLKTGPILAATFTSEGKLHTGFRFDRGGKPEYFTGDGRPLKKSFIRMPIPYARLTSGFGSRRHPVLGNIRMHMGVDYAAGTGTPIMAAGDARVQFIGWKGGYGRAVILDHGRGYTTLYGHMSNFSKVKPGQRIAQGTVIGYVGSSGLATGPHLHYEFRVNGVHRNPLSITMPPPEPLSGVALAQFRNQTGVALARIRQVENVIYADASPVQTAPAAAPAKTVAVAAKKKIRRG
>NZ_CP011131.1|WP_187313121.1|506533_507676_-|anhydro-N-acetylmuramic-acid-kinase
MSKPSSGLYLGLISGTSADGIDAALVRFQAGAEPTRCELVLGRTYAWNEALRERLVALGQGGDARSLEELGTLDIQVAEAFADAARALIDEAGVSAGDVRAIGSHGQTVRHRPAGARYDGQHPFTWQIGDGAVIAERSGIATVADFRRRDVAAGGHGAPLMPAFHAALLHSPDQDRAALNLGGIANFTLLPARGEVRGFDTGPANCLMDAWALRHLGQAFDADGAFAAQGQIDTALLARLLDEPWFAQPPPKSTGREQFQLAWVESRLRGGERPQDVQASLLELSAITIADALRAHQPATKRVLVCGGGVRNRALLDRLAAQLPGVVVESTAAFGLDPDFVEAMGFAWLARQTVAGLPGNLPSVTGARGLRVLGTVHPAA
>NZ_CP011131.1|WP_187313120.1|506093_506432_+|hypothetical-protein
MTDIILHNLDSILADRLRRVAEARGWSLQRTALHLIESGLFVVEAEMVGRFSDQDAGVLQEAIAALQDIPSDPGFSLIGRAEPQEPPTKRVTGPDLSGLELLEEFRPRRDPA
>NZ_CP011131.1|WP_057941377.1|504566_505976_+|MFS-transporter
MTSEAGASDSPVAAAKPARSGWRLVLSNLRQPKVLVMLLLGFSSGIPIYLVGNTLGFWMRENGIELSMIGVLSWVGLAYSLKFLWAPLVDKLDAPLFGRWLGRRRGWMLLSQIVAAVALVGMAWVEPRQGQLLIGGLVLDQLLVFGALALVVAFASSTQDIVIDAWRIESADSAEQQGLLTSTSTLGYRGALLVTDSLILILAAHAGWSLSYDAMALLMGVGVLAVLAAREPAASVLAAATPHPALFTARGLFDALVGPFIAFFRQHGRWALLILLTISLFRLPDFLMGPMANPFYADLGVDKETVGTVRGSFGLIATVAGVAVAGLSAVRFGFIATLIAGAVLGPGSNLAFAYLALHGGDTGVFTAAMVIDNFCNGYAGVALVGYMSSLTNAGYTATQYALLSSFYALLGKMLKGLSGFAVEHLETGRSLLEAYALFFVATAVIGIPALVLCIVLAVRKPPLVMPPPT
>NZ_CP011131.1|WP_057941376.1|503803_504577_+|exodeoxyribonuclease-III
MRIISFNANGLRSAATKGFFDWFKTQNADVLCVQETKAQEHQLTGPAFLPDGYRAFFRDAITKKGYSGVAIYAKREPDEVRTALGWAPFDDEGRYIEARFGNLSVVSFYIPSGSSGELRQGFKFEVMDWLKPILDQWLASGREYVLCGDWNIVRSRLDIKNWTSNQKNSGCLPPERDWLNGLCTDDAGWVDTYRALKADAQDYTWWSNRGAARANDVGWRIDYQLATPGLRDKLRACSILKEPRFSDHAPFSVDYDL
>NZ_CP011131.1|WP_083512248.1|503171_503747_-|GNAT-family-N-acetyltransferase
MPDMTAATDRPIPAAEPAPVRVSVVSPMLAPAVRALQVAPEQLQFVGDTSYNLDQTRLDPNSEAMAVLAGERVVGFYRLDFSVAAIAGRALGEPSVGLRAYVIDRREQGRGYGTAAMIACAQDLRRRYPERRLLALTVNLRNRAAYGVYLKAGFADTGELYHGGSAGPQHLMLLRLTPAPSSSPSPDRPLP
>NZ_CP011131.1|WP_057941383.1|522186_523722_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSATPRPKPVVLLILDGWGHRDDPTDNALAQATLPNWDALEASEAHTLIHTEGRHVGLPDGQMGNSEVGHMNLGAGRIVYQDLTRIDAAIEDASFFANDELRAACAAAKSAGATLHLMGLLSPGGVHSHERHIFAMIDLARREGVARVAVHAFLDGRDMPPKSAAPSLQRLEEVCAAAGNAHIASISGRYYAMDRDKRWDRQLRAWNAIVEADSEQRAATAQEGLDAAYARGETDEFVAPTVIGDARPMADGDAVVFMNFRADRARQLTAAFVDPNFDGYPARRPKLSRFVCLTEYDARLPAPVAFGPDDLHNTLGELLAAHRLTQLRIAETEKYAHVTFFFSGGREDPYEGESRILVPSPKVATYDLQPEMSCPEVTAKLAEAIRTQSVDVAICNIANPDMVGHTGDLQAAILAAQAVDKAIGVIVAAVREVGGALLITADHGNLEMMRDPATGQPHTAHTVGPVPLIYLGPRKASLRSGGALRDVAPTILDLLGIEPPVEMTGRSLLQP
>NZ_CP011131.1|WP_057941384.1|523721_524987_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MRFARAWLIAWLAVMPLAAPVSAHAAAQSTSREAERKLEKIKTELKSVADERRKLEGQRGDATQQLRAADEQVGHSNRALRDIESRLAREQASMKQLQAKRDALNTKLGSQRQELARLLRAAYAQGNDAPLKLLLSQDRVADSGRILTYHGYVQRDRAKRISELSAQLRELDTLERQIVERRASLDSTRKQQRSQISQLQKDRKARAALVAQINEKYQDRSTRERELGRDAKGLEQLLAKLRAAAARAEAQRRAAAKAKAEREAREARAAAAAAASGKPAPVRKPPVAVASAPAPQVGGLGWPVSGALLAGFGGTMPDGRSSEGLLIGAPAGATVKAVGDGTVVYSEWMTGYGLLLIVDHGNGYMSLYANNDALLKDAGATVKKGDAVATVGSSGGHGRPALYFELRRGGQPVNPNTWLRR
>NZ_CP011131.1|WP_083512250.1|525271_526711_+|S41-family-peptidase
MAQQAPEPKPAVAPASPAPAQASPPKPADSAPAAKPGNDDEDIDDQAAPVPPAQAPATAKAKSKPGKGEDDADSKVPIDEIRRYVAVYNAVKQAYVEPVDDAKLMHSAIRGLLLDLDPHSVYFDKVAAEDFDEQSRGNYEGIGVELQRQPDGTLRVISPIDDTPATRAGIKAGDLITAIDGKPFKVDDADSSGPLRGPAGSKVVLTIVREGRDKPFDVTVARETIRVASVKSRMLEPGYGYIRVAAFQADTAADFETQLEKLKTQSGGKLRGLVMDLRSNPGGLLTAAVQIADDMLESGKIVSTRGRIAISDAEFGATPGDRLDGAPLVVLVDAGSASASEVLAGALRDNGRARVVGSRTFGKGSVQTVLPLDNGDSVKLTTARYYTPSGKSIQALGIVPDVVIRAPKTPDNDGRPSYTEATLPGHLHGDEEDAPGSNAGEVLEGDAPIASALAELKKPAGAKVPTAVSKSTTPSANRR
>NZ_CP011131.1|WP_057941385.1|527064_527382_-|DUF1820-family-protein
MPTLYKVTFLNAGKIYELYARKIASGTLWGFTEISELVFDLHEGVVVDPTEERLRDEFGTTRVLHLPMQSIVRIEEVERKGQSAIRDAATGEKVVTPFPFPAKPR
>NZ_CP011131.1|WP_057941386.1|527532_528228_-|rhomboid-family-intramembrane-serine-protease
MFVSIPSRERTRLRWATPLLFALLWMCFIVSAVVLPDPEQRRLMVEWGALSGGLSNPEAWWDAIRDGSLLRLFSALFLHADWAHLLGNLVFLLIFGLPAERAMGPWRLLALFLFGGAVANLAAVIAIATPDRLIIGASGAVSALIGAYLALFPSAKLGVVVPLGLFLQFVKVPAPLLIGVWALLQVVFTFIGPAFGAVAWSAHLAGFAFGGAFALIARAGIARRLRRKRGY
>NZ_CP011131.1|WP_057941387.1|528494_529874_+|TonB-dependent-receptor
MQPSHRYTRLTALALGIAGVITFGSAGATGFQIRENSVKNQGRAFAGSAVSENDASVVSNNPAAMVNLDTVTIRGDVTAIDLTAKFTGGGSAAAGTPLARSLTGGNGGDPGDVTAVPAMSIVVPLHGAFEKLTLGAQLSAPFGLKTEYDSDWVGRYNAIESEVKTIDLTLSAAIKLTDRFSIGAGFIYERAEATLTNAVDFGSAICRVSAAACITPNPVAAPFGPQKNDGLAKVKGDDNGIGWILGFQWKPTDALAIGYSHRSEIDHDLEGNITFTKPGSVAALLAARGINTYNSGPGGAALTTPSTDTLSVSYKFTDQFRMMFDAQKTDWHSLQSVDIKRADGTLITSEQFQWEDTMMYALGAEYDFNDAFTLRGGVAKDESPTNDTHRTPRLPDNDRTLYSLGLTWNANEHLSVDAAYTRIQIDSPDVNVVSSSGSTLVGKFKGHADLFGISAQYKF
>NZ_CP011131.1|WP_057941388.1|530042_530741_+|MOSC-domain-containing-protein
MIRTHTVIDSLLRGRARPYTRPGSVSAIAKTPFAERVHIGEAGVDGDEQGDRRVHGGPDKAVHHYPREHYSAWRDDIGDHALLRAPGAFGENFSGEGLTEAQVCLGDRYRIGGVLLEVSQGRQPCWKLNDRFGIADMARRVQASGRTGWYYRVIESGEAAAGDTLELVERAWPQWTLQRIATMLYTRTLDFEELRAAQALPLVPSWRKLVQMRLERGAVEDWGSRIDGPAAG
>NZ_CP011131.1|WP_057941389.1|530812_531067_+|DUF2164-domain-containing-protein
MAEIKFTDAEKASIVAKLQGYFNDELNQQIGRFDAEFLIDFISEEIGGYYYNRGLYDAQTLVAAKLEAVGDELLQLERRTDFSR
>NZ_CP011131.1|WP_057941390.1|531201_531654_-|DUF3574-domain-containing-protein
MSCKCLLSAALLSVLTACASLAPLPVKPDDPSACAERRADRVLFGMNSPDGPVSEAQWQAFLSEFVTPRFPAGLTVYQAKGQWRGDSGQVEQEDSRAIDLIHEDNAEERKRVVEIADEYKRRFKQEAVLIVSTPARACFAQQSASTKTAG
>NZ_CP011131.1|WP_057941391.1|531924_532311_+|hypothetical-protein
MNSSFAQSRLQALQPGDADYAILLDLATPHARKATGLALNLKIDELDRQGDWAFMRSQMRGADGRRPDWSASAYAEQAAAGGMSDTYAALFKRNGDQWSLVVEAVAPGDVVWESWPQQFGAPASLFGY

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Crispr_ID: NZ_CP011131_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_3

927862-927942

Orphan

I-E

Consensus_repeat	Method
CTGGATTCCCGCGTTCGCGGGAATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011131_3

>merge|NZ_CP011131|3|927862-927942|CRISPRCasFinder
CTGGATTCCCGCGTTCGCGGGAATGACGGTCTGGAAGGATGGCGTTGAAGTCTCTGGATTCCCGCCTTCGCGGGAATGACG

>NZ_CP011131|3|3|927862-927942|CRISPRCasFinder
CTGGATTCCCGCGTTCGCGGGAATGACG	GTCTGGAAGGATGGCGTTGAAGTCT
CTGGATTCCCGCCTTCGCGGGAATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_057945253.1\|931654_932602_-\|mitochondrial-fission-ELM1-family-protein	unknown	unknown	gnl\|CDD\|377637
NZ_CP011131.1\|WP_057941655.1\|917034_917781_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941654.1\|915542_916988_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236940
NZ_CP011131.1\|WP_057941656.1\|917792_918155_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_083512291.1\|936425_937829_+\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844
NZ_CP011131.1\|WP_057941665.1\|933478_934057_+\|polyisoprenoid-binding-protein	unknown	unknown	gnl\|CDD\|225228
NZ_CP011131.1\|WP_057941658.1\|920348_921797_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941667.1\|935094_935298_+\|zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|226826
NZ_CP011131.1\|WP_057941659.1\|921825_922317_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941664.1\|931096_931507_+\|immunity-22-family-protein	unknown	unknown	gnl\|CDD\|379476
NZ_CP011131.1\|WP_148648734.1\|918313_920317_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224001
NZ_CP011131.1\|WP_057941653.1\|913811_915452_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP011131.1\|WP_057941669.1\|937862_938789_-\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	unknown	unknown	gnl\|CDD\|181542
NZ_CP011131.1\|WP_057941661.1\|925155_926565_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057945254.1\|932746_933334_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP011131.1\|WP_057941662.1\|926597_927098_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941663.1\|928095_930945_+\|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase	unknown	unknown	gnl\|CDD\|236836
NZ_CP011131.1\|WP_057941666.1\|934094_934808_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
NZ_CP011131.1\|WP_057941660.1\|922691_924725_-\|multicopper-oxidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|259922
NZ_CP011131.1\|WP_057941668.1\|935308_936451_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340846

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_057941667.1\|935094_935298_+\|zinc-finger-domain-containing-protein	gnl\|CDD\|226826	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown].	9.54288e-14
NZ_CP011131.1\|WP_083512291.1\|936425_937829_+\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	1.09915e-18
NZ_CP011131.1\|WP_057941654.1\|915542_916988_-\|hypothetical-protein	gnl\|CDD\|236940	PRK11633, PRK11633, cell division protein DedD; Provisional.	4.18723e-05
NZ_CP011131.1\|WP_057945254.1\|932746_933334_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	4.50024e-124
NZ_CP011131.1\|WP_057941665.1\|933478_934057_+\|polyisoprenoid-binding-protein	gnl\|CDD\|225228	COG2353, COG2353, Uncharacterized conserved protein [Function unknown].	7.94582e-64
NZ_CP011131.1\|WP_057941664.1\|931096_931507_+\|immunity-22-family-protein	gnl\|CDD\|379476	pfam14112, DUF4284, Immunity protein 22. A predicted immunity protein with an alpha+beta fold and conserved tryptophan,tyrosine and an acidic residues. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, which usually contains toxin domains of the ColD/E5, Tox-REase-4, Ntox49 or Ntox14 families. The domain is also found in heterogeneous polyimmunity loci.	8.54236e-07
NZ_CP011131.1\|WP_148648734.1\|918313_920317_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	6.59714e-05
NZ_CP011131.1\|WP_057941653.1\|913811_915452_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP011131.1\|WP_057941669.1\|937862_938789_-\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	gnl\|CDD\|181542	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase.	3.38562e-167
NZ_CP011131.1\|WP_057941668.1\|935308_936451_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340846	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences. This family is most closely related to the GT4 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.	7.20299e-65
NZ_CP011131.1\|WP_057941666.1\|934094_934808_+\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.21654e-70
NZ_CP011131.1\|WP_057945253.1\|931654_932602_-\|mitochondrial-fission-ELM1-family-protein	gnl\|CDD\|377637	pfam06258, Mito_fiss_Elm1, Mitochondrial fission ELM1. In plants, this family is involved in mitochondrial fission. It binds to dynamin-related proteins and plays a role in their relocation from the cytosol to mitochondrial fission sites. Its function in bacteria is unknown.	7.15909e-104
NZ_CP011131.1\|WP_057941663.1\|928095_930945_+\|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase	gnl\|CDD\|236836	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase.	0
NZ_CP011131.1\|WP_057941660.1\|922691_924725_-\|multicopper-oxidase-domain-containing-protein	gnl\|CDD\|259922	cd13853, CuRO_1_Tth-MCO_like, The first cupredoxin domain of the bacterial laccases similar to Tth-MCO from Thermus Thermophilus. The subfamily of bacterial laccases includes Tth-MCO and similar proteins. Tth-MCO is a hyperthermophilic multicopper oxidase (MCO) from thermus thermophilus HB27. Laccase is a blue multi-copper enzyme that catalyzes the oxidation of a variety aromatic - notably phenolic and inorganic substances coupled to the reduction of molecular oxygen to water. It has been implicated in a wide spectrum of biological activities and, in particular, plays a key role in morphogenesis, development and lignin metabolism in fungi and plants. Although MCOs have diverse functions, majority of them have three cupredoxin domain repeats that include one mononuclear and one trinuclear copper center. The copper ions are bound in several sites: Type 1, Type 2, and/or Type 3. The ensemble of types 2 and 3 copper is called a trinuclear cluster. MCOs oxidize their substrate by accepting electrons at a mononuclear copper center and transferring them to the active site trinuclear copper center. The cupredoxin domain 1 of 3-domain MCOs contains part the trinuclear copper binding site, which is located at the interface of domains 1 and 3.	7.362e-59

>NZ_CP011131.1|WP_057941662.1|926597_927098_-|hypothetical-protein
MTAAPQTPSPLTGEDVSRRVLKLIGSLRSNADLTVEHLEQHTGLSMQRAANGDGSFGTGARIDANWSYNLFVSPVLGEPRNQLTFDFARNGDPAAPMTPVCGMDFDDYARELKRMGFQDSVVRAEHGRVSYWNFRGPVTVRVFVEGESNASPEKIGHQCVKTITVE
>NZ_CP011131.1|WP_057941661.1|925155_926565_-|hypothetical-protein
MSKPISADLQKLLDDFGKQPGVSANAVKNLTDTIKGSPALTDQLNGAVAAGHLKSFKALTDPNMGGAYNGGTQTMSLPVAGLDAGFNKGEITFVLGHEVQHGFNRAARDAVRSTFYTEAQALAKNPAAVHDYTPLLNKVIEGDRVNESTANIAGWNALVSAAKEAKPTATLGDVYNMQPGRASDFIARTGTAPNFAYAAKPGLTLEADLTIAVNPANTAGMAKYYYDLPPASTGLGYGGNSDYPNYHGAIYLPMISQWEQAHGRTADGGKPQVHINMNSLHLNREIMETNGLDLGTASKQPYFDTSTTPPTAANFHHTKDTHRSVRDPIAPTHDAPSQTPAAGVGARAAHGNDPLLQGIRDQVQAEFARHGSPLSERDADRVSAALAVQSKNAGMGLPDHVVLSVDPATKEVGKTVFLVKGELDSPSHTRVSVSPQQAPALEDSLRQLESAAANAPAQSTQQAAKAIQQ
>NZ_CP011131.1|WP_057941660.1|922691_924725_-|multicopper-oxidase-domain-containing-protein
MERIHSFSAAGTRLRLARTPLAAAAVACLFSAAPFALWAQDASKSAAAAKLAPRALEQPVLARMLRSQDLKPLLSQTPAGTKPLDTHEAKLDLRIAFTESKIWNPNSQRYDKVKLRSYQSPGTNPDVPFVAPTIVTSPGETVRVGLDNQLPPQPDCHPANINIPHCFNSTNLHSHGLWVSPTGNSDNVLLTLRPGVKFEYEYNLPADHPAGTFWYHPHLHGSTALQVSSGMAGALLVRGDRLPGSDRTGDVDTLLRDETGAAMPERLLMFQQVAYACRGTDGKIKTDSNGFWTCGENDIGQIDNYDDQFGFGVWQKSGRHTSINGTVLPTFNGLVAGRVERWRLLHAGVRDTVNLQLREVDAASASIAGLSGAALDNWVTQHCTGAPLKQFEVASDGLTHAKAIVKSENVLQPGYRSDALVVFPKAAKYCVLDAAAPASASITNAPEDRQLLGIAEVGGAAKVDDVEAFVTEKLVASAKQQMPENVRERVVAGLRDHLRLDDFVPHRTIDKGEINAKGQDVVFNIEDVVEDGKKRTVYMVDGKPYDPSAARDLILGNVEEWRLSSLVGGHPFHIHVNPFQIVSILDDKGKEVSVTGDVDGNGKLVDPQYANLQGTWKDTLFVKKGYHLLVRTRYERYIGEYVLHCHILDHEDQGMMQNVRVLVPDGKGGGISATSHH
>NZ_CP011131.1|WP_057941659.1|921825_922317_-|hypothetical-protein
MNQPTQSATASRSDPKAVGENLLKLISNLRSAADLTAERVERETGWTMQPSDSGGYRTGAALTPDWGYSLSLSTPSGSDTRQLRFEFNRKNADATATAVCDPDLERYAQALQALGYQRSPIGAEHDRVLGWSFQRQDLWVRIYTRAESEEAFDHECVSLITVE
>NZ_CP011131.1|WP_057941658.1|920348_921797_-|hypothetical-protein
MPSEPIGGKLRDCLNEFAEDKRVTPEALKNLEAAITRSPALTHQLNEAADKGELKHFRLKQDTHAGGSFQSRSQTMSLGLDDLTGKYDANNMTFVLGHEVQHGVKAPGAKLTPMDQARDTFTAQAGVVAASADPVHDYTPALSQVMQAHRENEAKAHLQGWNALVGAIREKDPSPSLEDIYKASPRAADFIEMTGSDSNPSYRMKKGLALEKDQTLSLSNADNVKAMGEYYFGKSAGDARLGYKGGSDYTNLYGASYVGELSRMELDRSRALPDATQVQIDMKSLGFKERTLERNGIDLGSHAKQRLPYYDISDNKPELSHFDHTVESHDYIKNNKVKAPTAGQSPNSAQAQTADLRDERHPGHAMFQGIRNQLGAELQRQHLPMNEGDADRVAAALAVAARRAGIDRPDHIVLGNKDGGPASATVFAVAGKLDDPAHLRASVSVAEAIKTPVEESTRQLDAERETAAPARQPPAQQNALQH
>NZ_CP011131.1|WP_148648734.1|918313_920317_+|alpha/beta-fold-hydrolase
MRGLVGLLVGLVLLGGSGCAVVKVKERGFGEIAAERNLDALNGGKLSTSAATALGSAGLDPDQCAKDAAPCIQQLRALAPIEDWLATASELQLLRMNAAPATLSKAAESAGWSKRKAAATEPGDAGVAQVSAEVAAQAASDERTRAAIETARYAYAYLFLTPRRPEQRVFEARQQRVLHYYNRAVDVVAQSAFEASRGQVGATPLQVGGMNLGIGLHGYEASEISRQPEALLASDSLGFDNLRAVYRRDGFGTGLVAVFPRRSPQDPDAEDIPYRETRYLPVTATLRFAGDSLDGVLASREASMDVYNPYRIDSETIGGRKVPLAANYSAAYGVWLARSELARLSLSSLLRPKQARSFKPRIYLNQPYDPDKRVIVLVHGLASSPEAWVNLANEILGDETLRKRYQLWQVFYPTNMGILSNRLAIDSALSKTFEHYDPEGDDIASHDAVLVGHSMGGVIARLLVSDSGEHVMDETLRSFDPAAAQRLSQEPLVRALTVFRPMPQFGRAVFLASPHRGAVVSDAWPLRMVRKLIRLPFDVLRDTAELIQRTQVNQDELQKLGFRKGRPPTGPDDLSPHSLFMRSTEDLPIESGLPYHTIVGQRDTKLPLLQSSDGAVPYRSSHLDGALSEKVIVSGHSVQETPQAILELRRILRLDMAEYEKRGKRAK
>NZ_CP011131.1|WP_057941656.1|917792_918155_-|hypothetical-protein
MQPFGNPAQSGQPELHVQHIACVNNAAFAMRFIIQRLDGDRVISQAPAAGAFAAGQARSVDLSSLRFHDQALEVGDRVRIRARAIGGTHRDGPSVAYAPNGHTATFSVRGTTLIFSINRI
>NZ_CP011131.1|WP_057941655.1|917034_917781_-|hypothetical-protein
MSASHALEGQAVDWLRDSENLLVRFGLNNEDADARHRNRGARAHMFTDARLPQVAPDRVFPNVVAVSRGAALSIQIRARSREPLGFGFRIATGAEPVVDRLYAVQRADASGYRSVTVRRFQRDAHLITIDLMRARLGHSHRLDALQQLWTCDITTWDVHQFLDPITARVYTRTNPRFPPTPPAGPLDTRRGSAREAAGGAALRVNAGVIWADGSAEQTFERIQVQAEADPDRNFFGRLRVHFFVVDPN
>NZ_CP011131.1|WP_057941654.1|915542_916988_-|hypothetical-protein
MLVTIAFAGEPDRDLVLRLEPDTSLRQVRERLAALDAMAPGDRFGFGNARLAPSIEADTKLKEVIGKDGVLTVRPAPRAQEPEPEPEPAPAPAPAPAPPRPALRPTAPQAQPAEAKWGLRNEDETPDLLAQLQGRMAGFNVRTPDDFTALPLATVQALFASRRLDRGLRFGPDPGDSLFGARAPRAPVVYRHPQRPPHSGGVSFTSRWNTSATASRVLHELHTRSIHNANAGGGVNGFGLAADFRSDLERLRRNEVTTIHLTDEMIVPKVVLMLDPDTDLDVAPELVEAVDRALATPSRAGQYEALHERVFAVFGYFFPCEALLGGTRLRTLSATSEDLREQEQLLSGFGFGAAAKDVPTSFGPASADIGYARADSRLSTHRHIRQLREQSIRTIGGHPALGLADEQALQWMAGLDAVELWATIGHRRLVPILRFLPPRQRDRCVSVIEQFARSSASAQHTVLDMAAYVMPLNRDLLGAIL
>NZ_CP011131.1|WP_057941653.1|913811_915452_+|chaperonin-GroEL
MAAKEIRFGEDARAKMVRGVNILANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTSDNAGDGTTTATVLAQALIREGMKAVAAGMNPMDLKRGIDKAVVEAVAELKKLSKPSSTSKEIAQVGAISANSDADIGDLIAQAMDKVGKEGVITVEDGSGLENELDVVEGMQFDRGYLSPYFINNQQSMSAELDDPYVLLYDKKISNVRDLLPVLEGVAKAGKPLLIVAEEVEGEALATLVVNTIRGIVKVCAVKAPGFGDRRKAMLEDMAVLTGGTVISEEVGLQLEKATIKDLGRAKKVQVSKENTTIIDGAGDGDSIQARIKQIKAQIEETSSDYDREKLQERVAKLAGGVAVIKVGASTEIEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRAKAAIAGLKGANEDQNHGIQIALRAMEAPLREIVTNAGEEPSVILNKVQEGTGAFGYNAANGEYGDMLEFGILDPTKVTRTALQNAASIAGLMITTEAMVAELPKKDEPAMPGGGGMGGMGGMDF
>NZ_CP011131.1|WP_057941663.1|928095_930945_+|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase
MPVSVSSNPSADHPGALESALAERAIARLRAASPQAQAALDEPSLRARLARVAVVSDFAIDTLVRQPEVLLALATDDGATPAPPPILDTEHRTDWGTRLRRYRSAGSTRLIWRDVLGLDSVEDTLEGSTHLAEVCLQTALHALEHEFEQRHGAVRTADGERVRLVVFGLGKLGGAELNFSSDVDLVYAYEHDGGTQFDGRDPARALDAETYFAKLGQQLARLLDEITAEGFCHRVDLRLRPYGNAGRVAWSFAAMEQYFQREGRDWERYAWQKARPVAGDIDAGERFLEALRPFVYRRYLDFGALDGLRSMKAAISAEVARKELADDIKRGPGGIREIEFLVQALQLIRGGREAELRGRRLLPALRELVAQRQIGEEAGENLADDYRYLRRLENRLQMLRDAQTHALPGVDADRARIASGLAYADWAALLTELERRRERITAEFEALLAPRRRRAAPDALTAYWRALPEAGEADTLADAGFEAAADADAALRDFARSPGVRGLSDAVRARLDRVLPALLQGAAASSQPMLALKRLLALLHNVLRRSAYLALLDEQPAALSRLIEVVSRSALLAERLASHPLLLDELLDARVVGPLPDREELLAACAEVDGGDDTEASLQALNEVRQSLSFRIAMALRDGRQSAEDSARQLAWLADGVVVRVLAMAEQEVAAAHGRVPDARFAVLGYGSLGGEELGFGSDLDLVFLYDAPAVEGGATSDGARPLDAPRWFARLAQKIVALLGAVTAAGRLFDVDVRLRPDGAKGLLVSSLASFSEYQYERAWTWEHQALVRARFVAGDADLRGKFDAVRARTLARARDAGKLRGDVAAMRARMQAELDRSDAAYFDLKQGEGGLVDLEFLLQYLVLRDSAQAPALLSPRDTPGLIAAARDAAALADAQADALGRAHSVLLAAGLECTLDRRPRRVVETEAIATARGAILAAMREHGLRPA
>NZ_CP011131.1|WP_057941664.1|931096_931507_+|immunity-22-family-protein
MIDDTTRGKISVWMGTSTQTLEEFNRYTQGMEDPDSGCPAHRDFGCGFIDSDFFIAYGTAGNKIVPVEELVVEVDTYSTDTDRLIVARCHELGVHEGNSLYFYDHCTFHEEQPGRLYNQLRFIGTFDNAKPNRSRR
>NZ_CP011131.1|WP_057945253.1|931654_932602_-|mitochondrial-fission-ELM1-family-protein
MSATWSLTDGHAGNQRQATALAQALGRPATDWILSPRAPWRWASPRRLPGASNAFGPDFVRWLEARPRLAIGCGRQAALATRLLRSDACRSVQILDPRIATRHWDLVIAPEHDGLHGANVVTLLGSLHPVDDLWLAGARKTFPAFGALPGPRTALLLGGSSAHAHFDQAAFDALAERLQTLLEREGGSLLATTSRRTPAPIRARLRERLARLPRVSWYEPGEGTNPYPGLLGWADRIVCTADSVNMLSEAAATRVPVFAFGIERVDGRPRRFVDSLLSLGRVRAFDQQLLPYPVTPLRETARVALEVRRRLRLED
>NZ_CP011131.1|WP_057945254.1|932746_933334_+|malonic-semialdehyde-reductase
MSKALNDEALDQLFRTARTHNVLGGEISDETLRQLYDLVKWGPTSANGSPARFVFVKSQQAKQKLAPALSAGNLAKTLAAPVTVIVAHDLDFYEKLPYLFPHDDARSWFAGNEASINITAFRNGSLQGAYLILAARALGLDSGPMSGFDNAKVDEAFFAGTKIKSNFLINLGAGDHAQLFPRSPRLPFDEAARID
>NZ_CP011131.1|WP_057941665.1|933478_934057_+|polyisoprenoid-binding-protein
MKRILLAAALGLAFAGTASAAALTYKIDPNHTDVVASWSHFGFSNPIAHFGKVDGSITYDPAKPAASKVEVTIPLDGLDSHVGDFDEHLKSADFFDAAKFPTITFKSTKVEAAGDKKLKVTGDLTVHGVTKPAVLDVNINKIGEQPMAKRAAAGFDASTTLKRSDFGIGKYVPNVSDEIKIHITTEAIVPKP
>NZ_CP011131.1|WP_057941666.1|934094_934808_+|pirin-family-protein
MIIQRPSNARGRVQAGWLDSRHTFSFGGYYDPGWMGFGCLRVINEDRVDPGAGFAAHRHANMEILSYVLSGALAHQDSSGGGGTIRRGELQWMSAGHGVEHSEFNASASEPVHFLQIWVQPDRLNAQPAYAQPAAVAGGDGEFVLRASRDGVHGGVPIRQDLTLHSLALGKGTRAERSLDSRRMYWLQVAQGRIDANGQVLDAGDALGLVEESAPLVLTGLGDSSADVLWFDLPLAG
>NZ_CP011131.1|WP_057941667.1|935094_935298_+|zinc-finger-domain-containing-protein
MTTAANAHPTQANADQRYTVTLADLPLSCPLPSMALWNSHPRVYLPIEAERECLCPYCGAHFTLIDA
>NZ_CP011131.1|WP_057941668.1|935308_936451_+|glycosyltransferase-family-4-protein
MPSPEPTNPRRLTVMQLLPALESGGVERSTLEVADALVRAGHRAIVVSAGGRLVPKLLASGAEHIELPIGRKSPSTLLHAFKLRRLWADLNVDLVHARSRLPAWIGLLAWRGMSEQARPRLVTTVHGLNSPSRYSAVMTRGERVICVSRTVRDYVLQHYPDTEPDKLRIIPRGIDTLAFPRAPWPDRDARAWAAAQHPALAGEGPLLLLPGRGTRLKGHADGLQLLADLRADGRDARLWLPGARESGREAYIGEMEQLAQQLGVADAVAFTEPTDAIARAYAASDLVLQLSRKPEAFGRTVVEALACGRPVLGWNHGGVGELLAQLQPRGAVEPFDAQAAQSAACELLTQAPAAVDTMAFSLRAMQEATLAVYAELIDAH
>NZ_CP011131.1|WP_083512291.1|936425_937829_+|O-antigen-ligase-family-protein
MPNSSTPTDPNGPAAAAPIGLPPSTAHAPPELPPAIVGWRWAPVWVLAYVALLFAPGIAETALSLGAITMLVKLVLARFNTGARLLSDPAWALTSVLFAAYWLPELISAIDAVDPGRALREAAVDLRYLPFLWLVAAAVASKEGRRTTFGGLAIIISIWTADALLQGISGTSPLFFLIDALKHALNGHSTCSEAEIASVDRLGGILGPCNLKLGQVIASFSPFVLYAAARRYGVGGWLAASAAVGIVVVLAGSRASWITFALVLLLSGWRLLGWKRLLALFASGLLALVVLNFTSTQVHDRLQRTSHIVSTDLIGVDTALSGRTRIWRAALCMVAEHPINGVGARGFREAFPACDPQPGLVTSWGYGPALHAHQLILEVLSETGAFGLLMWLAGAALAWRAWTFADGAARERARPAMLALLVTVFPFNTHLAFYSTFWGGLTLLLAALYAGSLLAQPPLDGTRVDSR
>NZ_CP011131.1|WP_057941669.1|937862_938789_-|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase
MAEPALPPRPSLLSPRLWPMWLALAGMCAGARLPWALQRLIGGWIGAFALRAASERRRAARINLKLCFPEKTEAEREQLLRESFRDLGVGFFEFARAWWGEVAPMRRTVRIEGLELLDEVRAAGRGVLMISGHFMTLEMCGRLMCDHLPLAGMYRKHRNPVMEWAVKRGRLRYAAAMFTNEEIRPAMRHLKQGGFLWYAPDQDMRGKDTVFAPFFGVPAATITATHQFARLSGCAVVPFFHRREGADYILRVGAPLPEFPSSDATGDSARVNAQIESMVRQAPSQYLWIHRRFKRRPPGMVSPYKRQS

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Crispr_ID: NZ_CP011131_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_4

1175383-1175605

Orphan

I-E

Consensus_repeat	Method
TCCTTCCAGAACGTCATTCCCGCGAACGCGGGAATCCAGTGCCTTTCGT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP011131_4

>merge|NZ_CP011131|4|1175383-1175605|PILER-CR
GTCATTCCCGCGGACGCGGGTTCTGCTTTACGTGGGCGGAGCCGAACATCCAGAGCCTTCAGCGCATCCTTCCAGAACGTCATTCCCGCGAACGCGGGAATCCAGTGCCTTTCGTGCGAGAACGTTTGAAGTCTCTGGATGTTCGGCTCCACCGAAGTAAAGCGGAGCCCGCGTTCCTTCCAGACCGTCATTCCCGCGAACGCGGGAATCCAGTGCCTTTCGT

>NZ_CP011131|4|1|1175383-1175605|PILER-CR
GTCATTCCCGCGGACGCGGGTTCTGCTTTACGTGGGCGGAGCCGAACAT	CCAGAGCCTTCAGCGCATCCTTCCAGAACGTCATTCCCGCGAACGC
GGGAATCCAGTGCCTTTCGTGCGAGAACGTTTGAAGTCTCTGGATGTTC	GGCTCCACCGAAGTAAAGCGGAGCCCGCGTTCCTTCCAGACCGTCATTCCCGCGAACGC
GGGAATCCAGTGCCTTTCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_148648748.1\|1182674_1187177_+\|DUF4329-domain-containing-protein	unknown	unknown	gnl\|CDD\|225750
NZ_CP011131.1\|WP_148648750.1\|1187959_1188274_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_148649172.1\|1174049_1175279_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP011131.1\|WP_057941825.1\|1180254_1181079_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	unknown	unknown	gnl\|CDD\|273212
NZ_CP011131.1\|WP_148648746.1\|1175749_1176358_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941812.1\|1162450_1164271_+\|autotransporter-domain-containing-esterase	unknown	unknown	gnl\|CDD\|238883
NZ_CP011131.1\|WP_057941816.1\|1171226_1171676_+\|ATP-dependent-zinc-protease	unknown	unknown	gnl\|CDD\|226553
NZ_CP011131.1\|WP_187313134.1\|1167210_1168095_-\|XamI-family-restriction-endonuclease	unknown	unknown	gnl\|CDD\|312917
NZ_CP011131.1\|WP_057941826.1\|1181390_1182074_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225928
NZ_CP011131.1\|WP_057941813.1\|1164495_1166691_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224422
NZ_CP011131.1\|WP_057941817.1\|1171734_1172643_+\|30S-ribosomal-protein-S6--L-glutamate-ligase	unknown	unknown	gnl\|CDD\|182468
NZ_CP011131.1\|WP_057941822.1\|1177596_1178310_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP011131.1\|WP_148648745.1\|1168127_1169786_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|226608
NZ_CP011131.1\|WP_036106879.1\|1173247_1173931_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP011131.1\|WP_148648749.1\|1187186_1187522_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057945277.1\|1161756_1161957_-\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|168159
NZ_CP011131.1\|WP_148648751.1\|1188597_1188828_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941821.1\|1176572_1177487_-\|branched-chain-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|235841
NZ_CP011131.1\|WP_148648747.1\|1178696_1179971_-\|peptidyl-Asp-metalloendopeptidase	unknown	unknown	gnl\|CDD\|372673
NZ_CP011131.1\|WP_057941815.1\|1170274_1170856_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237057

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_148648748.1\|1182674_1187177_+\|DUF4329-domain-containing-protein	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	1.74206e-19
NZ_CP011131.1\|WP_148649172.1\|1174049_1175279_+\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.17859e-52
NZ_CP011131.1\|WP_057941825.1\|1180254_1181079_-\|methylenetetrahydrofolate-reductase-[NAD(P)H]	gnl\|CDD\|273212	TIGR00676, 510-methylenetetrahydrofolate_reductase., 5,10-methylenetetrahydrofolate reductase, prokaryotic form. The enzyme activities methylenetetrahydrofolate reductase (EC 1.5.1.20) and 5,10-methylenetetrahydrofolate reductase (FADH) (EC 1.7.99.5) differ in that 1.5.1.20 (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while 1.7.99.5 (assigned in many bacteria) is flexible with respect to the acceptor; both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as 1.5.1.20 and 1.7.99.5, this model describes the subset of proteins found in bacteria, and currently designated 1.7.99.5. This protein is an FAD-containing flavoprotein. [Amino acid biosynthesis, Aspartate family].	3.54479e-141
NZ_CP011131.1\|WP_057941812.1\|1162450_1164271_+\|autotransporter-domain-containing-esterase	gnl\|CDD\|238883	cd01847, Triacylglycerol_lipase_like, Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.	1.91066e-64
NZ_CP011131.1\|WP_057941816.1\|1171226_1171676_+\|ATP-dependent-zinc-protease	gnl\|CDD\|226553	COG4067, COG4067, Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones].	1.07728e-28
NZ_CP011131.1\|WP_187313134.1\|1167210_1168095_-\|XamI-family-restriction-endonuclease	gnl\|CDD\|312917	pfam09572, RE_XamI, XamI restriction endonuclease. This family includes the XamI (recognizes GTCGAC but cleavage site unknown) restriction endonuclease.	3.87718e-38
NZ_CP011131.1\|WP_057941826.1\|1181390_1182074_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225928	COG3393, COG3393, Predicted acetyltransferase [General function prediction only].	6.69922e-16
NZ_CP011131.1\|WP_057941813.1\|1164495_1166691_-\|S9-family-peptidase	gnl\|CDD\|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	1.1436e-75
NZ_CP011131.1\|WP_057941817.1\|1171734_1172643_+\|30S-ribosomal-protein-S6--L-glutamate-ligase	gnl\|CDD\|182468	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase.	1.54966e-127
NZ_CP011131.1\|WP_057941822.1\|1177596_1178310_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.000103636
NZ_CP011131.1\|WP_148648745.1\|1168127_1169786_-\|N-6-DNA-methylase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	1.26426e-09
NZ_CP011131.1\|WP_036106879.1\|1173247_1173931_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.50591e-71
NZ_CP011131.1\|WP_057945277.1\|1161756_1161957_-\|sulfur-carrier-protein-ThiS	gnl\|CDD\|168159	PRK05659, PRK05659, sulfur carrier protein ThiS; Validated.	5.20273e-27
NZ_CP011131.1\|WP_057941821.1\|1176572_1177487_-\|branched-chain-amino-acid-transaminase	gnl\|CDD\|235841	PRK06606, PRK06606, branched-chain amino acid transaminase.	2.42342e-165
NZ_CP011131.1\|WP_148648747.1\|1178696_1179971_-\|peptidyl-Asp-metalloendopeptidase	gnl\|CDD\|372673	pfam13688, Reprolysin_5, Metallo-peptidase family M12.	2.77746e-17
NZ_CP011131.1\|WP_057941815.1\|1170274_1170856_+\|hypothetical-protein	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	0.00238411

>NZ_CP011131.1|WP_148649172.1|1174049_1175279_+|HAMP-domain-containing-protein
MFAFATNWTRSRVENQLVEDAMNRNINKAAQQFELDPGNPQFGFDQVRAFVYTPDKFESVRINRPEWYELKDGIVGMNGVGDDGKPFAYRLAVRKTPRAWFFLAYDMTPSARSEMQFNRALYLSVLVFTLFSLLVGWWAASRVMSPVSELALRIKRSGRSAQSEALAAHFPDDEVGQLAEALDDYAERLTNVVQRDREFNADVSHELRTPLAVIKGAVELLLSRPDLEDKTRNRLLRIQRAEQQCTDLISALLLLSRSERGHGATDIAKLSEQLLEAHRAQLGGKALALSVEGARGLVVDAPEAAVAVALGNLIGNAVKYTTEGEVVVRLHDHSVEVIDSGPGLSAEDAAKLFERGYRGTHAGHSQGGGIGLSIVRRLCELYGWDVRVKPGEVKGVVATLTFGAADRLN
>NZ_CP011131.1|WP_036106879.1|1173247_1173931_+|response-regulator-transcription-factor
MRILVIEDNQDIAANLGDFLEDRGHTVDFAADGITGLHLAVVHDFDAIVLDLNLPGLDGLEVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRRGRGVQTRVLNAADLEYNLDTLEVRRQGKLLQLNPTALKILQALMEASPAVVTRQELETRVWGEELPDSDSLRVHIHGLRAVVDKPFDTPLIQTRHGIGYRIAAPESNG
>NZ_CP011131.1|WP_057941817.1|1171734_1172643_+|30S-ribosomal-protein-S6--L-glutamate-ligase
MKLAILSRNTKLYSTRRLVEAAREHGHSVRVLDPLRCYMRIASDGFQMHYKGREIAGYHAVIPRIGASVTRYGSAVLRQFELMETYTPNTSDAILRARDKLRSHQLLAAERIGLPATVFGDNPDDTADLLSMLGPPPHVIKLNEGTQGAGVMLTEKLSASKGVIEALRGLYANFLVQEFVAEAKGADLRCFVVGGNVVAAMKRQAPKGDFRSNLHRGGTAKGVRASAAEQEVAIRAAQVLGLGVAGVDLIRSARGPLVLEVNASPGLEGIEEASGVDVAGEIIQYVASRLKTKPARRTAARR
>NZ_CP011131.1|WP_057941816.1|1171226_1171676_+|ATP-dependent-zinc-protease
MSSKIVLGWRELAVLPSLGIAGIRAKIDTGARSSALHVDAHWRYVEAGEPWVGFRLSPGAVGAGEVEAAAPVFDEREVTDSGGHRTRRVFIRTVLSLAGAEREIEINLSDRRGMRFPMLLGRTAVAQVFTIDPARSFLHGRARRRVPRS
>NZ_CP011131.1|WP_057941815.1|1170274_1170856_+|hypothetical-protein
MLALHAGLFWFGESLLAPLPRMADAGEDPLLVLLPPRAAQIAPMPRVQPPRVTPARAPRIPARQRDAAPATASASASIDIPVAPIAAEPEPTGLTAIRIDPSALAASPRTPWDAPAGRAFASRAPALPGQGAQRFKMQAPRSIASTVKQIGRLFGGGGPDDCQETRKNIRDLAVLGADAVAQELEEERRNCRN
>NZ_CP011131.1|WP_148648745.1|1168127_1169786_-|N-6-DNA-methylase
MTGLKKKPADVRRAPAARRGHPQEPRLIQNERELIALCLALAGRGASLSAAERAAAKGIAPMADRSMVERARGLIGQGSDPLGGVFLRLRSSEVRRRLGAVYTPAPIVESMLSWCAEQGAPDRVIDPGAGSGRYLMAAALRFPQARLIGVELDPVAALMLRANLTVHGCIERATIVVEDFRQAALERIDGRTLFIGNPPYVRHHEIGEAWKTWFAESAHAYGLRASKLAGLHIHFFLRALQLAQPNDIGAFITSAEWLDVNYGATLRRLLADQLGGVAVHVLDARAMPFENTATTGAITCFKIGQPSQGLRVRAVESMETLNGLSKGDVVPWDSVRNAARWSPLFKPARVVPEGYVELGELCRVHRGQVTGSNDVWIAGEHARRLPSSVLIPTITRARDLLCAGAQLDNAQPLRCVVDLPADLDVLDAEARKAVKRFLTWARQQGADQSYIARHRKAWWSVGLKQPAPILSTYMARRAPAFVRNLCDARHINIAHGLYPRQDMPAAKLDALASWLRHNVITEDGRTYAGGLTKFEPKELERVLVPNLDALGA
>NZ_CP011131.1|WP_187313134.1|1167210_1168095_-|XamI-family-restriction-endonuclease
MAQDAHAAVSAFRWARLGEPLALWKATFRASRREVRAVFRELDLRAPQRIHSRQIAQLYRMQLGDALRYLAAPPISADDLKVLADSTLSGAALRKPSQARSVLRTIQQTLDPFRFQWVITARRPSPAEWKAAIVATASLLTYQRVATIRRNADKDDQERAVKAYLRDVLGLREEAPRKIDTMRDTPPPGSFCGESEVDGRKADIVVSLHDGRLLLIECKVSNSALNSVKRLNNDAAAKAAHWIKAFGVSQVVPAAMLSGVFKTRHLAHAQDQQSLALFWAHRLEDLGAFVNATK
>NZ_CP011131.1|WP_057941813.1|1164495_1166691_-|S9-family-peptidase
MNLRSLPCLLAAAFILPAAGAAEAPPVARTVDTVDHAFGLTLPDPYRWMEGDNNAEFQTWLRLQGEATRARLDALPATAGWRERLRGVSAGTVVHRLQRAVGERVFFLRQKQGSEGVLMVREKDGSERVLFDPNASKDGASITEYSVSADSKRIAVNIDRGGSEITQIRVFGVDDGKPLADAIDSVWGEFRAQWLADASGFAYTQMAPESERVGKDPIQNMRVRFHRLGTPAASDPLLQKAGDQQPAPMQPQNFPVVQLDADSDWALLSIGGARAEMRACVAPRKLAVAAAPPWRCVVDFDDKVQEVVLHRSTLYLLSSKDASNGRLLALDLDRPDARAADARVVLPESADAVINSVGTDNLVGARDGMYLRRMKLGVDDIVRIAYADKKSSQAAPQALDMPFSGSSPWMAANPRTDGLLFVLQGWTRPRMAYRHRPGEAKPLDLKLGATTPGNYDDIDTVLTEAISADGTRVPLSIVYRKDTVRDGRNLAMLAGYGAYGFSMQPTFDPLRLEWVKAGHVYAIAHVRGGGEKGAAWHAGGKGPLKYRGVEDFIAAAQQLTKMGFTAPQRTAVWSASAGGMLVGGAITRKPEQFGAAVINAGLIDTVRLLEGKNGANQVAELGDPRTAEGLKQLAAMDAYQQIRDGKRYPPTMLTVGLNDQRVVPWHSGKFGARLAAAGDGKVPVWFRTDAGSGHFATSMDEGALLWSDVYAFFEYQLQQPMQDGAGKAGAD
>NZ_CP011131.1|WP_057941812.1|1162450_1164271_+|autotransporter-domain-containing-esterase
MMKPVRTALAAALVLAAAPAFAAGDPYSQTVFIGDSLTDSGHFRPALIQAVGPNGALIGRFTTNPGLVWSEWLADYYGTNATSDNQGGTNYAVGGARTGTNTSGALGTIPSLATQTANYLAANGGRADPNALYTVWGGANDLFAVAAGAPAQSTITNAVTAQIGVIGALRNAGAEYILVPTVPDLGVTPQFRAGGAAQQAAGTQLASTYNTALYGGIASAGLRVIPLDTFNLLREITANPNPYGIGNVTGTACNPQITASSLTCSPANTVPGGADTYAFADGVHPSSKSHRILADYALSVLEGPRFIALLPNSASTVGRARADQVANHVGERSDGEGMRWWGSVRGDFQRYGHGDLYDGAGPALTGGVDWTRGNLVFGAFLGYGQQKQDFGLRNGEFEQKDTSIGGFIGWYGQHAWVNGQLSYTKLDFDIDRNANLGAVTRVHHGSADGKNVTAALNAGWEFGETLRHGPVIGILSQRIDVDGFAESEPTLSTSLAYPDQSFDSLIGSVGWQVNYTHSEGFRPYARLTFDREFEDAPKNAYARLQTVPGLGYYAVKGREFDQDYGTLLLGTRTKLFGLDANLGASVTVGQGAGNNTTVFAQIGSGF
>NZ_CP011131.1|WP_057945277.1|1161756_1161957_-|sulfur-carrier-protein-ThiS
MNILLNGEPRSLAAPTTLIELLHAEGLRERRVAVEINGEIVPRGRHADTALAEGDKVEIVHALGGG
>NZ_CP011131.1|WP_148648746.1|1175749_1176358_-|hypothetical-protein
MSVRPAVPCLAAIAALGLSACAHTSADTSPAVRHAPTSSAAAAPRLSAEQMLTHLLELIRTSARLEDFTVERLSRTMGVPVQRARDESQRYGYGEALDAQWNQNFEVDPQRTVGARFNFSFDPIAPEANPPLAELCRLDYPRFTAALEEMGFKRTPYRGEHGRFINDNFDRPGMRVAVYSQGEVSASGQSTGRVCVKRVQVF
>NZ_CP011131.1|WP_057941821.1|1176572_1177487_-|branched-chain-amino-acid-transaminase
MQYPEWIWHNGAIKRWAEATTHVMSHALHYGSSVFEGIRTYDTPNGPIIFRLNDHNTRLFASAKIYDMGIPYSLAQLNDACHEVIKANGHTTDYLRPVAYRGLGGFGLSADTPTDVAVATWKMGQYLGASVLEEGIDACVSSWQRFAPNTIPAGAKAGGNYLSGQLVAREARRLGFGEGIALASTGLLSEGAGENLFLVFNGALHTTPVSAALLNGLTRNTIITLARDVGIEVIERDLPREYLYLCDELFMCGTAAEITPIRSVDGRQVGTGRRGPVTERIQELFFGLFNGKTADKYGWLEAVK
>NZ_CP011131.1|WP_057941822.1|1177596_1178310_-|hypothetical-protein
MPSFARLCLSLLPPLALTAMALHPGAAQAQIRRCTDTRGNSVYTDRDCATVGGVDRLPRGAAQAQPPAYTGGCARNLRDLVGQITHAIDAHDGNKLASVYHWAGMSDAQAYSVIERLDAIAQRPLLDIAPVMPSAPVAAPAAGEWTTLPPAAPNAALTPLPPATSAPPPATGLGRPAGMDAEAAPPEAAVQSEAAAPVAQRRAPVALRLEQTLGNGITPSRTVFGLTRHFGCWWIKG
>NZ_CP011131.1|WP_148648747.1|1178696_1179971_-|peptidyl-Asp-metalloendopeptidase
MMPARNKLLPLNLAIALSLGFAGAASAASPAPLFSSPANAVLRSANTDTAYKAVKAERAAVKVDLVRADTAQINVNQEELLLNLAPGVNLKAHKLQAQSKPDGIVIWQGLVGDPNAQLKRINQFTGAELIDDPEESAIIVRQGDQMSGTVRSGGKLYRIDPLRNGGHTVSLIDEALMPPDHPSAAYSAKPIVPFLNDPKFNEAAALDKAPATVRVMIVYTQAAANAVGNTLTKANLAITESNQSFANSAVNVRFELAGQYTNSYVTAGFNTDLTRFRGTSDGYLDGYHSTRNSIAADVNVLIITDPAYCGLGYLNSNAASAFSVVGASCMTGYYSFAHEIGHNFGAHHDPSNGTNTVYAYGHGYWGPNNAWRTIMAYNCPVNCPRRNYWSNPNITYNGAPMGTAAKNNNARVLNERATTVAAFR
>NZ_CP011131.1|WP_057941825.1|1180254_1181079_-|methylenetetrahydrofolate-reductase-[NAD(P)H]
MLPISFEFYPPKTDDQRSQLDKTAAKLKPYTPHYVSCTFGAGGSTLSYTPETIRRLRQKHKLDAAPHLSCVGGTRVEIRELLALYRDIGCKRLVTLRGDLPSGMASAGDLRYANELVEFIRAETGDHFHIEVAAYPETHPQARDAHSDLENFKRKVRAGANGAITQYFYNPDAYFRFVDDVRASGIDIPIVPGIMPIANFSQLRRFSDMCGAEIPRWIAQRMHAYGDDADSIREFGADVVAQLCSRLIEGGAPGLHFYTLNLAKPTLTVLSRIA
>NZ_CP011131.1|WP_057941826.1|1181390_1182074_+|GNAT-family-N-acetyltransferase
MSDHILDNPIWQSLSTRHRELALGQGDAARYPASIAPFLGVARHGEAMDPSLAALVPPGDTALLLGRAPSVGPGWELRHMTDLAQMISPDPIAAADAADIVELGPDQRDDVLALTALVYPHYFRPHTMDLGRYFGIYQGDRLAAMAGERMGTHDYTELSAICTHPDFLGRGYARRLLIFLSNDNHARGRIPFLHVSHENPRAIELYERNGYRLRRDIPFWSLRWVGE
>NZ_CP011131.1|WP_148648748.1|1182674_1187177_+|DUF4329-domain-containing-protein
MKLGSIKNSFGAIPPETADRKKSALWIVALLRLTLLLSLSMPWAAQACDKSWGYSNYPNSVRLRAYCKTPEEARDACYALVDTLQYHRSHCIDGGNIYSAGNFRTGPETWLYATFLGDDHLAQPEKNMGEPKCPGQCFGDPINAGNGNKFESKVEYRGEGPFPLEFSWTYNYLLPAGAFPPHSYTLGGNRTFNYGSRIGRWSVFGVVGTTVLVSRPDGKMASFEQSESGGDWVPAVGQDYRLKQLPAGWEYQDEDGHYEVFNADGRLIELRDQDGYRQTLEYNAAGLLVSVRDFLGRTLGFEYNAANLIAKLNLPDGRAIKFSYTPQNRLSVVEYQDGSTVKYLYDEASYLGSATTLDGALTGVEDESGARYSSTHYNWDLALDTELSGSLDRYSANYERSNNRTYMAYTAIGLPSGATRKLYLTAVNYKILPRKIITECVDCAPRTMEYAYDTNGRYDVINDNGVTTDYDFDARGLPLQTVEASNDTTGHRRTTQTDWHTSFRVPLESRVLDANDALVAKNTWTYNNRGQTLTATQIDPSGLLAPRTAAYRYCEQADVTAGSCPLVGLLLSEDGARTDVADVTRYVYYPSDDAGCASSPSNCAHRKGDLWKVENALGQTSQEVLRYDGAGRAISSRDINDVVTDYEFNTRGWLAAIKTRGDNDASESDDRIARLDYWPTGLVKKVTLPDGAFASYTYDTARRLTAITNEAGNSIQYSLDSRGNRVKEDIKTASGAITKTFSRVYNLLNELQAVKDASQNATSLTYDSRGNPNTSTDALGRITDQDYDPLNRLIRTLQDANGLAVDTKVKYNARDQVAQVTDPNGLATTYGYNGLGDQTRLESPDTGITDFTYDAAGLLATKKDANDATAHRYTYDVLGRPTAIFYTAAGTADVEYDYDTASAACAAGETFAKGRLSAMRTDGTELQYCYDRFGRVARKVQIVSGKSFTLRYAYNNAGRLQAVTYPDGAVADYTRDASGRIAQVHVTPAGGVRTPLLTGATYQPFGPVAGWTYGNGRTLSRSYDLDYRPKTVFDNASGGLSLGYGYNAVGNLTELKDGLQSTTLAKYDYDALNRLNVTRDGPSGTALETYAYDQTGNRKSFTNGIGTSTYDYAPGSHKLAKAGAITRGYDAVGNTTSIGGTTKEFVYSANDRMKQIKQSGVVTMGYRYNGKGERVAAINNDTGPVTNYALYDEAGHWVGDYDSTGATIQQAIWMDDAPVGLLAGAAIAQSLKYIETDHLGTPRAVIDPTRNMAIWTWSAKGEAFGKDTPNQDPDLDGVAFLFNMRLPGQRFDAGSGLVHNYFRDYDPGTGRYVQSDPIGLSGGISSYSYAYSSPLESTDPFGLRPGDCYLTPDIAAANAIVESLPYSLRNNWEYGSWIYKTKNGYYTYDDPRTSWNTEYVNAGDPPAGLISLGKWHTHAREPYPAKPIRETFSAGDIRIPYGQFEWLGTPTGKILKYSSMGRGDAQPLPQPSPRNQDACDCSAPRKKSIIESIMEYLGLE
>NZ_CP011131.1|WP_148648749.1|1187186_1187522_+|hypothetical-protein
MNIITNIAVMILVLISSVPLRLAAGEPPDRLIKAADVAISSYSKNISERHTTPGADGDYMRNIHSYNIGISQNSRYFVFVFLPRNKNFSGGGGEVWVSKENMRVEKTANYF
>NZ_CP011131.1|WP_148648750.1|1187959_1188274_+|hypothetical-protein
MALIIFLVIALTMFSVHGQEKSRALEAASVARTKFISDLGKLKKTDWEWQEYISNADNYNIGISENKGNYVVVFSPREKGIRGGVYEYWIRRSDLKVVRFRGYE
>NZ_CP011131.1|WP_148648751.1|1188597_1188828_+|hypothetical-protein
MKLASEIAKSRPDFVICINRLGAENGDSVSQYNYATRLFEITDEAAQLRGMYWLKKAAAANLEVAKSLLASKQRSK

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Crispr_ID: NZ_CP011131_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_5

1231405-1231749

Orphan

Consensus_repeat	Method
GAAGACCGCCAAGAAGGCCGCCAAGAAGNC	CRT

6 spacers

The CRISPR arrays of NZ_CP011131_5

>merge|NZ_CP011131|5|1231405-1231749|CRT
GAAAGCGACCAAGAAGGTCGCCAAGAAGGCCGGCGCTAAGAAGGTTGCCAAGAAGGCCACCAAGAAGACCGCCAAGAAGGCCGTGAAGAAGACCGCCAAGAAGGCCGTCCGCAAGACCGCCAAGAAGGCCGCCAAGAAAGCCGTGAAGAAGACGGCTAAGAAGGCTGCCAAGAAGACCGCCAAGAAGGCCGCCAAGAAGACGGCTAAGAAGGCCACCAAGAAGACCGCCAAGAAGGCCGCCAAGAAGACGGCTAAGAAGGCTACTAAGAAGACCGCCAAGAAGGCTGCCAAGAAGACCGCCAAGAAGACCGCCAAGAAGGCGGCTAAGAAGGCTCCGAAGAAGGC

>NZ_CP011131|5|1|1231405-1231749|CRT
GAAAGCGACCAAGAAGGTCGCCAAGAAGGC	CGGCGCTAAGAAGGTTGCCAAGAAGGCCACCAA
GAAGACCGCCAAGAAGGCCGTGAAGAAGAC	CGCCAAGAAGGCCGTCCG
CAAGACCGCCAAGAAGGCCGCCAAGAAAGC	CGTGAAGAAGACGGCTAAGAAGGCTGCCAA
GAAGACCGCCAAGAAGGCCGCCAAGAAGAC	GGCTAAGAAGGCCACCAA
GAAGACCGCCAAGAAGGCCGCCAAGAAGAC	GGCTAAGAAGGCTACTAA
GAAGACCGCCAAGAAGGCTGCCAAGAAGAC	CGCCAAGAAGACCGCCAA
GAAGGCGGCTAAGAAGGCTCCGAAGAAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_148648755.1\|1230749_1231190_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941854.1\|1226996_1228118_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP011131.1\|WP_148648754.1\|1230016_1230712_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367272
NZ_CP011131.1\|WP_057941867.1\|1243599_1244199_-\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP011131.1\|WP_057941861.1\|1234808_1236401_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_CP011131.1\|WP_057941863.1\|1238073_1238955_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NZ_CP011131.1\|WP_057941849.1\|1222962_1223976_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237057
NZ_CP011131.1\|WP_057941851.1\|1224681_1225638_+\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
NZ_CP011131.1\|WP_057941866.1\|1242976_1243327_+\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|377753
NZ_CP011131.1\|WP_057941860.1\|1232855_1234280_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP011131.1\|WP_057941850.1\|1223968_1224592_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP011131.1\|WP_057941852.1\|1225641_1226082_+\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|224501
NZ_CP011131.1\|WP_057941865.1\|1240369_1241719_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225743
NZ_CP011131.1\|WP_057941862.1\|1236688_1238077_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225743
NZ_CP011131.1\|WP_057941855.1\|1228132_1228759_+\|2-hydroxychromene-2-carboxylate-isomerase	unknown	unknown	gnl\|CDD\|239320
NZ_CP011131.1\|WP_057941859.1\|1232149_1232683_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176860
NZ_CP011131.1\|WP_057941864.1\|1239006_1240158_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941853.1\|1226085_1226703_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057941856.1\|1228939_1229335_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP011131.1\|WP_148648756.1\|1241715_1242846_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187575

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_057941854.1\|1226996_1228118_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP011131.1\|WP_148648754.1\|1230016_1230712_+\|hypothetical-protein	gnl\|CDD\|367272	pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein. The N-terminal half of this protein corresponds to the capsid protein.	0.000864933
NZ_CP011131.1\|WP_057941861.1\|1234808_1236401_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP011131.1\|WP_057941863.1\|1238073_1238955_+\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	6.6839e-49
NZ_CP011131.1\|WP_057941849.1\|1222962_1223976_-\|hypothetical-protein	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	0.000766726
NZ_CP011131.1\|WP_057941851.1\|1224681_1225638_+\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	3.48315e-73
NZ_CP011131.1\|WP_057941866.1\|1242976_1243327_+\|DUF1304-domain-containing-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	2.14956e-36
NZ_CP011131.1\|WP_057941860.1\|1232855_1234280_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.46559e-63
NZ_CP011131.1\|WP_057941850.1\|1223968_1224592_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	6.16748e-27
NZ_CP011131.1\|WP_057941852.1\|1225641_1226082_+\|NfeD-family-protein	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	2.84804e-26
NZ_CP011131.1\|WP_057941865.1\|1240369_1241719_+\|MFS-transporter	gnl\|CDD\|225743	COG3202, COG3202, ATP/ADP translocase [Energy production and conversion].	2.94798e-27
NZ_CP011131.1\|WP_057941862.1\|1236688_1238077_+\|hypothetical-protein	gnl\|CDD\|225743	COG3202, COG3202, ATP/ADP translocase [Energy production and conversion].	4.71482e-30
NZ_CP011131.1\|WP_057941855.1\|1228132_1228759_+\|2-hydroxychromene-2-carboxylate-isomerase	gnl\|CDD\|239320	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).	2.04797e-57
NZ_CP011131.1\|WP_057941859.1\|1232149_1232683_+\|SRPBCC-family-protein	gnl\|CDD\|176860	cd07818, SRPBCC_1, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	1.25381e-54
NZ_CP011131.1\|WP_057941867.1\|1243599_1244199_-\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	3.34907e-137
NZ_CP011131.1\|WP_057941856.1\|1228939_1229335_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.82948e-65
NZ_CP011131.1\|WP_148648756.1\|1241715_1242846_+\|SDR-family-oxidoreductase	gnl\|CDD\|187575	cd05265, SDR_a1, atypical (a) SDRs, subgroup 1. Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.62527e-80

>NZ_CP011131.1|WP_148648755.1|1230749_1231190_-|hypothetical-protein
MAYPRKRRVWLAAKRGGQTKTRAAKREPGCIKQDASDVIRDLDVIGEESVANISAEEANPASTVLIVRAEVRIVLHVVALCFLTLLAGSVCWAKPNHAFSDCQQPRRFFLGAARPDVAVGADARGDGERARASTRSRCVRNYIAET
>NZ_CP011131.1|WP_148648754.1|1230016_1230712_+|hypothetical-protein
MPREDAGTNSIDSTRRRNASAKPAASPRDSCNRREDRTGPAHADDTTASRRADAPRHFRVGDFTCSKSAAGSVGDSIPTSPARVRSRREREFDRRRRKRFPDRCAHRARRTRRGRRAHRRPSRLTNGRFERASAPSRRRATTPTHALADAFARVAKPSPTPPTTPTPTRRERSRRPSNARAGQKKFAHFRAFGLVRREIRHPRGEEFFLPVQVAADAFEAFANARAHRRKN
>NZ_CP011131.1|WP_057941856.1|1228939_1229335_+|glycine-cleavage-system-protein-GcvH
MSEIPGDLKFMKSHEWARVEGDGKVTVGISDHAQGLLGDLVYVELPNVGDRVEAGNASAVVESVKAASDVYAPVSGTVTAVNTALADKPETINEDAYGEGWIYTVEIDEPDQLNELLAPDDYAELLEEDDH
>NZ_CP011131.1|WP_057941855.1|1228132_1228759_+|2-hydroxychromene-2-carboxylate-isomerase
MTVIDYYLSLISPYAYLGHAPVLALARETGARLAYKPVRIFELFSANGGLPLGQRAPARQRYRLVELQRARAQREVPLNLAPKFFPVDPSLADRCLIALCEAGRDPSSYMDAAFRAIWAHDQDLADRDVLARLLRDHGHDVEATFAAAQSEAVGAIYEANTAAAIAADLPGLPGYVLRGEPFWGQDRVEALREALLSGREPFLIDAGR
>NZ_CP011131.1|WP_057941854.1|1226996_1228118_+|glycine-cleavage-system-aminomethyltransferase-GcvT
MSQKTILNDAHRALGAKMVDFGGWDMPISYGSQIEEHHQVRRDAGMFDVSHMTVVDLRGARVRDFLRNLVANSVDKLQKSGKALYTCMLNPDGGVIDDLIVYFLDEQYFRLVVNAATREKDLAWIGEQARAFEVSVTERPELAMIAVQGPNAREKVVGLLREEDRARIGKLGKFVAGEAQTVDGIALFIARTGYTGEDGFEVVVPEDRAVALWDALLAIGVKPAGLGARDTLRLEAGMNLYGQDMDDTVSPYEAALAWTVALDEGRDFIGRGPLEKQKAAGAPRQMIALVMDEKGVLRHGQKVLTAHGDGEILSGTFSPTLGKSIAFARVPAGEIALGASGNVRVDIRGKEVPVRVVKFPFVRDGQAQDGVLA
>NZ_CP011131.1|WP_057941853.1|1226085_1226703_+|hypothetical-protein
MIALRAKRVLRASAMLTCLAPAFAYSGHAGTPQAAAMPAAQPGQTAPALVRAGARGGEDWIGKIVPPYPDGYKSNTGGCVGSGRSAEQVCARSIGTIDDAEDRSLKFYAAELVGRIGNEARWKITDVVPYPKLQHGERVSMSTCMIDGVTDPGVIAIVDTAVEGAAAREMFDAVRWAVKLDRRKGRFIEVKPTEVRCYNEGAEGE
>NZ_CP011131.1|WP_057941852.1|1225641_1226082_+|NfeD-family-protein
MSWSWQTIAWAAVALLLFAAEALAPGAFMLWLGLAAAAVFALVLMFPGLSVLAQVAAFVVLSFASIQVYRTWFRGRERQSDQPLLNRRAEQLVGRVVALERGIVQGRGRVQIADAFWDVSGPDLDTGAMVRVVGTDGMTLRVEPAG
>NZ_CP011131.1|WP_057941851.1|1224681_1225638_+|SPFH/Band-7/PHB-domain-protein
MGGTLLALVLVFAGVVLLFKTVRMVPQGYQWTVERFGRYTHTMDPGLHFLMPVIYGVGRKINMMEQVLEVPSQDVITKDNAVVKVDGIVFFQVQDAAKAAYEVATLEIAILNLVMTNIRTAIGSMDLDESLSKRDEINTKVLNAVDAATHPWGLKVNRIELKDIQPPRDLVDSMARQMKAEREKRANILEAEGFRQAAILKAEGEKQSVILEAEGEKEAAFRQAEARERLAQAEAKATEVVSNAIASGNVQAINYFIAQKYIEAFKSLAEAPNQKFVMMPMESAGIIGSLAGIGELAKDALASQQAARAPAATPRSGG
>NZ_CP011131.1|WP_057941850.1|1223968_1224592_-|RNA-polymerase-sigma-factor
MPPQITSSPPPAPASERPLSSFAIDVPETLLARVRAGEGAAFEQIYRWFERPVFTLAVRIAGDRDEATDVLQETMLKVFTRIGDFRGHRDGSGTPFWGWLRQIAVNEALMRLRSRRRLEHAVEADDEHLADDRMPPPPAAADAAALGRAMAQLPAPTRSVLWLYHAEGYTHEEIAALMQRSTSFSKSQLARGGRRLRQLLEPEQAHA
>NZ_CP011131.1|WP_057941849.1|1222962_1223976_-|hypothetical-protein
MPDRNPNPPQTWADAFAQLPPETPPADGWARMAATLAARQGAPAQAASTAQMPSSPVAHIDTPPRRRSAAYPARQWAIAAMLAIALPLGLWLSLRAQRPTLEVQSPGPIAHEAAPRNGGVEAPGVRASDGAVPASPANADAQRSDTVAVQPNPATATPLHIEPADTKTQRAPRKAAAVANAQRPGSTRATATRATPSHADTPAPERIAAELTPAQSDTDPAKTAALVADASASQRETALAAQLRELQTESAQLEALVTLTRDDRVASATAALMSSDLDQRLSLIDTALTDAALPAEQRLALWRQRVGALRALAGVESTQRWFAARGERYDDALVRVD
>NZ_CP011131.1|WP_057941859.1|1232149_1232683_+|SRPBCC-family-protein
MKTLLKGLLYLVVLLAAVFVVGGFLLPSSSHVERSITIDRPPAEVHAMLDSYKRFNEWSPWFEIEPTAKYAYSGPESGVGAAMSWEGAKVGKGSQRITESVPQQKVVNALDFDGTQATGIFGLQVQGAGTRVTWTLESEHGNNLVSRWFGLLLDSMVGKDYEKGLAKLKLVLESEPG
>NZ_CP011131.1|WP_057941860.1|1232855_1234280_-|serine-hydrolase
MKHDSSRRSLNPWRLGTLAALLTLTLGSTAQTSLRWHTPDPSQPSVSQAGVARSQGIDGTVAPQGLQIGSAANNLNPRVMPLAADFDVRQFEAMAQALVADQRIPGMAMAIVHNGQILSARGYGVTDVRNAEPIDAHTVFRLASLSKSFAGTLTGLLVNDGTLRWDSKLVDYMPSFQLIDPNAARTVTVADLLSHRVGLTHNTYDRDLENYADYRVLTQKLAYAPMSCQPGTCYGYQNIAFSLIGDVVFAATGDFYSQEVQRRLFKPLGMNDASLGLEGITSAARWAKPHVRARGGWASLTPKPTYYQLPPAAGVNASASDMAQWLIAQTGHRPDVLPLPLLATLHQPLVETPTEIRGSSWRRQRLGSAGYALGWRVFDYAGHRVVFHAGAVQGYRGMVAMLPERDLGIAVLWNSESGLPTGLLPTMLDRAIGMPVQRWLDVDGFDDPGLYASEGVNPQDPTGSNAQKSTAAPH
>NZ_CP011131.1|WP_057941861.1|1234808_1236401_-|choline-dehydrogenase
MPTEFDYIIIGAGSAGCVLANRLSEDPDTRVLLIEAGPRDLHPFIHMPAGVAKLVNKKGVNWDYDTAPEPNLDNRVLWWPRGKVLGGSSSINAMCYIRGATGDYDGWAAAGASGWDWNSVLPYFRRSERNSRGDDALHGSMGPLYVSDLRYTNPLSAVFIEAARQAGYAANGDFNGPSQEGFGYYQVTQKNGARCSSAVAYLDPARERHNLQIVTKALVSRITIENGRATGVVYSSGGRAYHQHAQREVLLSGGAINSPQLLMLSGVGPADQLRRHGIEVVADAPQVGQNLQDHLDICTLQHSTQRVTYDRLSDIVVALNYYLRGHSGPGSSNIAEAGGFVRSDLAPDDRADVQFHFVPAMLDDHGRHRLRGDGYTAHACFLHPRSRGHLELVSASAGDKVRINANYLSDAEGFDMKMMVECAKLSRTLFKQKAFDAYRGKPIFPAREDLSDAELVEFVRAKAETVYHPVGTCRMGDDAASVVDSQLRVRGIDGLRVIDASVMPTLVSGNTNAPTIMIAERASDLIRGRV
>NZ_CP011131.1|WP_057941862.1|1236688_1238077_+|hypothetical-protein
MSAVQGASLSTGRVHSGEWRAVALSVAYFFCVLTAYYMIRPVRDQLSAVVGSTQLPWFYAATLLATLALTPVFSGLVSRYPRRVVVPVVYGFFIACLIGFVPLFGAHGPLSPRVLGTVFFVWISVFNLFVVSVFWSFMTDIWNEGQARRLFPIIAVGGTVGSLVGPALTGRLVGVIGVAPLLVVSASLLGLALVFVILLGRWSRVHGTRRFESSHEAAIGGGMFDGIKQVFANPFMRSMAILLLLGDWIGTVNYGLVVDYSKATFTDAVSRTRFAADLDLMTNIVALSAQVLLTPWLLSRRGAASVIGVWSVVTVMFLTLSASVADAHAPLTELFPAYGALIASLPAGMAAMIGPLPAVAMALVVSRGLAYGMVGPARESLFSSAARTLRYKGKNAVDTAAWRFGDVAVATTMVGLRSLGVGVAGLAGISAVVAAGAGVVGWNLARWVQRGGAAEPGEGARA
>NZ_CP011131.1|WP_057941863.1|1238073_1238955_+|metallophosphoesterase
MRRGWRPWPRQQWLQRLFVTLVLCALACLAWGFFWEPRQLVERDYAFALPHWPRECEGLRLDVVADLHTGSPHNGLDKLDDIVGRLAASDASAVLMAGDYVILSVLGGTYISADQLAPHLKPLTARKPVYAVLGNHDWWKDGHKVRAALESAGVTVLEDQARAAQFGECRVWIVGIGDKWETRHDVAGAFAGVGDDAPTIALTHNPDLFPDIPPRASLTIAGHTHGGQVRLPWIGTPVLPAEQRYAGGYLIEHDKHLFVSTGIGTSILPVRFGVPPEISRLTLRAAAREPVRR
>NZ_CP011131.1|WP_057941864.1|1239006_1240158_+|hypothetical-protein
MDRNAMLCAVVLMLIGLWPWRPARADLFEPPRVETYLSGNGRYRLTVTPSADPAPRERKDVPPEKTAQARMERREGAGWVQVWRGPLRNPVAPPWAVVSDDGRTATFNDWYGAGHGPRVVVLYDTVGRMVRSLGLEQLLPADYVRALPRSVSSIDWGREHRFSADGRQVLLRVAIPNNNDRSYEPAGYVELALDATTGRRASGYETALRRAYIQAAPAIAREQVFWEAAKAVRRAPLLAPATSDYRDWNRYLSEACRRLDPDAGERGPGLRRIQMQAGRADLPELRQIVETLSNPGRETGALVFATVFDPRSEQDSLVAALAKAAQEAPAGRLAGRRVCVLVDDRRSAAAAAALARTGATYVQLDPSQPIAQRPEVLRELERN
>NZ_CP011131.1|WP_057941865.1|1240369_1241719_+|MFS-transporter
MNGLRKALAQTPPLWWSLLYFFCLLCGYYVLRPVRDAMGASSDAATVFPHAAIQWAQSHGLQLKDFVLQVLFTCTFVVMIALQPVYGALVARFPRRVFLPVVYGIFILCLFAFHWAFHTQVPGRGMVFFVWTAIFNLFAVTVFWSYMADVFDDRQARRVYGYIGAGGTAGAVIGPMLTQWLVQPLGVANLLLVSAGFLAVCVLCIVRLRPWAIRRAHAQGLDSGEGAMGGSVWAGLKLVWQRPVLRAMAATLFFSVGAATLLYNQQAAIAREFYPGAEAATAYFARIDSAVNLLAILTQLLLTRWLLDRHGVAPALLMPGLILLLGFGVLMASPLPVMVAIVQVLQRGSEFALAKPARETLYTRVDRPSRYKGKAVIDTAIFRGTDLAFVWIHKAVALFGTQAVFAAGAIAAAGMTAGAWSIVRAQRGLPGADSSSDSAFDRQPARGES
>NZ_CP011131.1|WP_148648756.1|1241715_1242846_+|SDR-family-oxidoreductase
MTFNRRDFLAAGAAGAGLLAMPSFARTILQPKPRKILVMGGTGFLGPHFVEIARKHGHTLTLFNRGKTNPDKFSGEEYHDIEQLHGDRKTDMKALEGDRQWDAVLDTSAYIPADVTRSGKLLAARVKQYVLVSTISVYAKNDAPADETSPVATLADPNVTEVTGETYGGLKALCEKAAEQELPGRTTVVRPGLIVGPGDNSDRFTYWPARADRGGEILAPGSEQDPTQFIDVRDLAAFLLTTIERGHVGIYNADGAPGALTMGAVLRESQRASGKKSSVTWVPADFLEEQKVQAWSDMPAWIPARGEYAGFGRTSVSKAKAAGLNYRPLRETARDTLVWWRTLPEERRAKLKAGLKPEREAEVLKAWHAKAKTKGG
>NZ_CP011131.1|WP_057941866.1|1242976_1243327_+|DUF1304-domain-containing-protein
MHWLAIVLIAVVASLHLYFLVLEMFLWTRPLGMKVFRNTPEKAEITRVLAANQGLYNGFLVAGLVWGLACARVDVATFFLACVVVAGAYGAATVSRRIFYVQAVPALAALAAVWLL
>NZ_CP011131.1|WP_057941867.1|1243599_1244199_-|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSAYGHCEKMAEAVAEGARAAGAQVDIKRVPELVPEEVARKSHYKLDQAAPIAQIADLEHYDAIVVGTGTRFGRMSSQMANFLDQAGGLWAKGALHGKVGAAFTSTATQHGGQETTLFSIITNLLHFGMVIVGLNYGYAGQMRLDEVTGGSPYGTTTITGGDGSRQPTQNELDAARYQGREVAETAKKLHG

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Crispr_ID: NZ_CP011131_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_6

1718191-1718293

Orphan

Consensus_repeat	Method
TTCGGCTACGCCGAAGTAAAGCGGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011131_6

>merge|NZ_CP011131|6|1718191-1718293|CRISPRCasFinder
TTCGGCTACGCCGAAGTAAAGCGGAGCCCGCATTCGCGGGAATGACGTTCTTGGGGGCGCGCCGAAGTCTCTGGATGTTCGGCTCCGCCGAAGTAAAGCGGAG

>NZ_CP011131|6|4|1718191-1718293|CRISPRCasFinder
TTCGGCTACGCCGAAGTAAAGCGGAG	CCCGCATTCGCGGGAATGACGTTCTTGGGGGCGCGCCGAAGTCTCTGGATG
TTCGGCTCCGCCGAAGTAAAGCGGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_057942204.1\|1709655_1710372_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP011131.1\|WP_187313146.1\|1724016_1724904_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP011131.1\|WP_057942212.1\|1719677_1720415_+\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NZ_CP011131.1\|WP_057942211.1\|1717072_1717972_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP011131.1\|WP_083512365.1\|1723088_1723640_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942208.1\|1714660_1715125_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_CP011131.1\|WP_057942217.1\|1726791_1728087_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP011131.1\|WP_148648784.1\|1706133_1707081_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369321
NZ_CP011131.1\|WP_057942218.1\|1728307_1729327_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP011131.1\|WP_057945335.1\|1726001_1726769_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP011131.1\|WP_057942209.1\|1715371_1716214_-\|type-1-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|153235
NZ_CP011131.1\|WP_057942206.1\|1711422_1712643_+\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|238287
NZ_CP011131.1\|WP_057942214.1\|1722029_1723046_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349893
NZ_CP011131.1\|WP_083512364.1\|1718655_1719459_+\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|377682
NZ_CP011131.1\|WP_057942213.1\|1720469_1721843_-\|DUF2252-family-protein	unknown	unknown	gnl\|CDD\|226770
NZ_CP011131.1\|WP_148648786.1\|1725403_1725787_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942207.1\|1712788_1714600_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP011131.1\|WP_057942205.1\|1710695_1711355_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP011131.1\|WP_083512362.1\|1707626_1709534_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273634
NZ_CP011131.1\|WP_057942210.1\|1716263_1716971_-\|type-1-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|153235

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_057942204.1\|1709655_1710372_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.13621e-13
NZ_CP011131.1\|WP_187313146.1\|1724016_1724904_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.20491e-05
NZ_CP011131.1\|WP_057942212.1\|1719677_1720415_+\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	2.10645e-20
NZ_CP011131.1\|WP_057942211.1\|1717072_1717972_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.19736e-69
NZ_CP011131.1\|WP_057942208.1\|1714660_1715125_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.26073e-21
NZ_CP011131.1\|WP_148648784.1\|1706133_1707081_+\|hypothetical-protein	gnl\|CDD\|369321	pfam07335, Glyco_hydro_75, Fungal chitosanase of glycosyl hydrolase group 75. This family consists of several fungal chitosanase proteins. Chitin, xylan, 6-O-sulphated chitosan and O-carboxymethyl chitin are indigestible by chitosanase. EC:3.2.1.132. The mechanism is likely to be inverting, and the probable catalytic neutrophile base is Asp, with the probable catalytic proton donor being Glu. (see the Chitosanase web-page from CAZY).	0.00027674
NZ_CP011131.1\|WP_057942218.1\|1728307_1729327_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.9954e-55
NZ_CP011131.1\|WP_057945335.1\|1726001_1726769_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	8.27309e-53
NZ_CP011131.1\|WP_057942209.1\|1715371_1716214_-\|type-1-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	4.34388e-75
NZ_CP011131.1\|WP_057942206.1\|1711422_1712643_+\|DUF2974-domain-containing-protein	gnl\|CDD\|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	9.91156e-07
NZ_CP011131.1\|WP_057942214.1\|1722029_1723046_+\|M28-family-peptidase	gnl\|CDD\|349893	cd05640, M28_like, M28 Zn-peptidase; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	1.64656e-72
NZ_CP011131.1\|WP_083512364.1\|1718655_1719459_+\|MipA/OmpV-family-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	1.16908e-43
NZ_CP011131.1\|WP_057942213.1\|1720469_1721843_-\|DUF2252-family-protein	gnl\|CDD\|226770	COG4320, COG4320, Uncharacterized protein conserved in bacteria [Function unknown].	4.29985e-108
NZ_CP011131.1\|WP_057942217.1\|1726791_1728087_-\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	2.03661e-42
NZ_CP011131.1\|WP_057942207.1\|1712788_1714600_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	0.000237543
NZ_CP011131.1\|WP_057942205.1\|1710695_1711355_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	9.78521e-17
NZ_CP011131.1\|WP_083512362.1\|1707626_1709534_+\|hypothetical-protein	gnl\|CDD\|273634	TIGR01451, unnamed_protein_product, conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.	0.000586081
NZ_CP011131.1\|WP_057942210.1\|1716263_1716971_-\|type-1-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	1.30397e-98

>NZ_CP011131.1|WP_057942211.1|1717072_1717972_+|LysR-family-transcriptional-regulator
MSRRFDHLGDVETFIAVIEHGSLTAAAVALATTPSVISRAIVRLENRLGTQLLRRTTRRQGLTDAGRVYLEHARSAFALIDDAERAIQDQNGELSGRVRLSVPTTYGHYRLPAMLQRYAQRYPRVSIELNIANRNVDLVAEGYDLAIRLGQLPDSGLVARKLEDATLCVVASPEYLQRAGIPQGLDDLAAHVCLPFEMPSTGRIAQWQFRDGDRDIDWTPESTLRVSDDVLGVVSLAEHGAGLCQTYDFIVADRLQRGRLIEVLPQLRGRSRPFSLIYAPHRRLSAASRALIDLMVGEA
>NZ_CP011131.1|WP_057942210.1|1716263_1716971_-|type-1-glutamine-amidotransferase-domain-containing-protein
MSPNVSASLKPVLFVLTSHGVKGSTDQPTGYYLGEVTHPLAELEAAGIAVEFASIQGGEPPVDGLEVEDALNARYWNDAGFRAAVRDTQALDAADASRYSAIFFAGGHGAMWDFPVSDAVRRVTREIFEAGGAVAAVCHGPAALVNVTLSDGAYLVAGKRVSAFTDEEEAAVGLSDVVPFLLASTLRERGALHQPAPNWSRQVVVDGRLITGQNPQSAGAVGAALRELLLTRAAV
>NZ_CP011131.1|WP_057942209.1|1715371_1716214_-|type-1-glutamine-amidotransferase-domain-containing-protein
MKSLQVLAASLALALSFGSAHAGSVLIVLSDADHLDLKDGKTLSTGFYLNELMQPVKALLDAGHQITFATPQGRAPTLDRSSADPMYFGGDVEALRAHQALLDKLALTSAEKSPVLSLARIEQTGYDRYDAVYIPGGHAPMQDLLNSPALGRLLSDFHAKNKTTALVCHGPIALLSTLPDAARFTAQLAAGGRASKPAQWIYAGYQVTVISNQEETIAKPQLKGGEMKFYPQTALEQAGARYSSNTQPWTSKVVVDRELITGQNPASAADVGKELLRRLK
>NZ_CP011131.1|WP_057942208.1|1714660_1715125_-|carboxymuconolactone-decarboxylase-family-protein
MTLQARMNHPAVVLPETMKALWALKASVERKGVPDATLILIELRASQINGCGACVDMHAKAGKKAGETDERLFAVAAWREAPYFDGAERAALALTEALTRISDRPESVSDEIWDEAARHYDEAALAALVVAIANINVWNRLNVAVKQPVGSWKA
>NZ_CP011131.1|WP_057942207.1|1712788_1714600_+|ankyrin-repeat-domain-containing-protein
MTPISSPDLPRAQAELLKPDSSNSNRRRVADAHLKRYPRDPVVLYAYIASHMRDTIKWSIGNDDRTRYPWALGRALATAFEVLAQPDPEASPIRPALARATNVAAALLALEDRPDAAALEQAGLRLDAYKALDAQPFQDYEREQWFPDSHYRAARGRLRAWQAVLDSETCAQPQFGFLSDYIESRDLRWAFDPLVLRPQFQAWARRELRERRGSRAGGAIEFDCVDSYRNHATVPEKQMQALIVGRLLAALLAGMPNLVSNAWRLSLFKLPGTAIYLDALFAAGLDPNATMRDGHPLLHYAVEKGDTVAVQAYLAAGADPLREVGNDNALDYANSVAVKKLLEDATRPRAAPADVAQLHAGAKRLNPAEADFCAGLYGDSTGDFDATLAELQRTPPQSWNDALGGALSQRAPWHHLLLARSLALAGVRQPPCGTPGREPMWVCGDLHINGPLELSHPLVVTGDLTVDGPILDCDESLLVVAGSLKARALITEGALLVGGDCELGEFLWGDYNDQQLIVRGALSVPLLVLSDHVARIGDEDRVGYRLDDPDQAGLSAWFVRQAFENEWLSRDRISRLFKSGQPVLRARRAPTPVFAGALSCSRM
>NZ_CP011131.1|WP_057942206.1|1711422_1712643_+|DUF2974-domain-containing-protein
MSQSSQPPAGEQPQSFADQVRGQQAKPIDKTLARLMDDLYDLGPGTDGFKPLNAEQLTAAGIDPSSLENKDSGFLARIYGDEHGHYVLAYSGTDEGKDWVTNFRQGLGFKDAQYNQAIALASEASVAFGDEVVITGHSLGGGLAGAASISSGIPAVTFNASGVHDKTLERIGIDADAAKREVAENGQIRRYAVKNEILTDLQEHSIPLKWAMPDAVGHKIELPDPDPQSFWERMVPGNGIKHGVQIHYIDAVIKAQEMAMPGPGQHEAGRGRVAGEPGAALAPQAQPGPADPAHPGHALYDQALRGLRGLEPGALDFRGEQGYRNAASHCAVDARAQGMERIDHIVPGRDGGGFFLVQGGLDDPGHRRVFLDQQRAVSQPPDNAALAQAAPAEAPAHSEQRRAMSN
>NZ_CP011131.1|WP_057942205.1|1710695_1711355_+|ankyrin-repeat-domain-containing-protein
MSEAVTHQVFADPRVAELADAVAAGDRADIRRLAAGVDLSARGDKQVTLLEWAVFNQSLDGLSALLELGADPAWPGVDGGTVVHLAAMAKDPAFLEALLAHGADPDTRHSVTGATPLSAALMGERPVQFKRLLSAGADPNHADRMGNTALHVAGKINQPDHALELLKAGADANARNAQGVSFQRYAFMTPPSLLNARTRADRDALHAWLREHGIALERG
>NZ_CP011131.1|WP_057942204.1|1709655_1710372_+|tetratricopeptide-repeat-protein
MKAGDFITVQEDNGDWHTVRILEADTWPDGSEVFHCTSYRPTRERPHADALRMLEVAVHHAPIDAADFKARWSVLHSQPLTDADKAGFFEYLKHTDFPRYVEATGQDLSALIASANAEYRQGCALSEQAQPQRAIEHYERAFDLFPLFFEAIDNRAFSLMELGDYAAALIGFEHSLRVNPQGDAASFSRGECLLKLGRYAEAEAVFRDGAQRPGEHQALYRQFEETARNQRWLAARGK
>NZ_CP011131.1|WP_083512362.1|1707626_1709534_+|hypothetical-protein
MVTGNVWRPARRGCGAALAALIVAAALPAQAQVQRTFVNLGFEQPDLGTGACVAFLVGPQQVTGWNTTHPSGIASGCGVTPNPASGPIVELWGNSFNATPARAGKQHAELNANQASRIFQNICLTNSEVISWRLSHRGRNSATTPDVMSFGLNASGSTATAVTSPIAQIGTTNNGTDRVDTAGTPSSASQGTLSIGASSNGWRDYSGSFTYTGTSGVQQVGFAAVSSSGGISLGNFLDEIQITLRPYIEFDAANYSTREGQAATLPRLRVIGTVPAGGIVVPVRITGGTAALGSDFSVTSGNGNIVNVSIPAGSYDNTSFDLPISIIDDAVIEDNETVQFTAQPSANDYTLTSTTSCASGSAGQTTATLTIVDNDVDLQVAKQVDNAAPTPGGNVQFTVTYRNNTARPTLGDTSAHDAVVNLSDAVPAGLTFASWTCTPIGAATCPAASGSGAINASATLPAGNAAAGVGLRYTINATLGAGQCAAIVNTATIAARAPFAEGSSAQAGFLTPAPGGSADNSAAVTVDAVCVSLSLSKTDSNASYTPGGQADYIVRACNTNGPDTATGATIRDNLPNGARLRAPWSCAPGGGGGTCPAGGGAINDNAIAVSGVVLPVGACVDITVPVRFSANPADY
>NZ_CP011131.1|WP_148648784.1|1706133_1707081_+|hypothetical-protein
MVGYSSWWGKRGLPLALSLIVGALAAAPARGAQCGMSLSFQQTDGNAHGGRTAVWADPQSASLLFVEALNVNTDGTRRSYRVDDFWGERVALNNLCNAMSDACANLSNAQLRARRIATEQASAAGWPAAQLQATRISSSIIPFRNGKPCPAVDGFLVSATALHAPGMSDACDIGNYVDALLTPALVIPKAPSPFAARAKVGDLAVTMVPGTNRVVFAVVGDSGPSRQLGEASIALNGKLLGREGLPQNYLEVRGKPPFLGRGWTVPRAAVLIFPGTRDTQQPFMTPERIDAAARARFEQWGGVERLSKCVGDYSS
>NZ_CP011131.1|WP_083512364.1|1718655_1719459_+|MipA/OmpV-family-protein
MRIVRLVSPLLLLLPFAVSAQVRQEGEERADVAPSNWSLGVAGAIRTELYAGEGNHTRAIPFFGYEGERFYFRGISAGYHLVKSDSFVLDGFVSGRLDAMDADDFGRRELARRGIDRDLLEDRDDSVDAGVSASWRGTAGEIQVEVKADIADVSGGYEADVSYRYPMQAGGWLFTPSVGVSALSKDLANYYYGTLDEEVARGVVSYRPGSVTIPHIGLTVAKPFAEKWRFIANVSYQVLPDEISDSPLVAENTDGVGQAFFGISRSF
>NZ_CP011131.1|WP_057942212.1|1719677_1720415_+|siderophore-interacting-protein
MHQSALPARQTPGAGLLERAFTRLLMRPVRITSVQAPDPDFRLIAMQGEALKRSAWSPGDKIQLKLDGGLQTRTFTPIELDPASGRMRILAYCHGGGPASAWARGVAEGEVRQIFGPRGSLNLQNLASCTVVFGDETSFALAAALQRDEPGLRCVFEVASPERSQPVLDLLGINRARLIERRADDTHLDQTLDAIQRSAEIRTSFVLTGRAPAIQRIGRALKAQGLGGGALRIKPYWAPGRTGLD
>NZ_CP011131.1|WP_057942213.1|1720469_1721843_-|DUF2252-family-protein
MPPRSAPLLALVLALAACTNAADADAAVARKSWVVAQIRDYNHPYAATASNELDTKLATMAGSAYDFYRGADHLFYQDMLTRPASAYTSAQTGYTWLGGDTHLGNFDAARDAGGKAVFKAADYDEGYLGQYVWDLRRLAASMVLAGRDNGLSDSDIGAAIDTLVGAYLDQMSAFKGSDGEANLRLTRDNTTGVVDDLIAKADGKTRSGLLSKYTALSGSARRFQDLSNLVALPAAGYSAVSGSMAAYVGTIAASKRYAGSYYTVKDARQKLGSGVGSLGKLRYYVLIEGPTSSTADDVILEFKQQAASVVAVAAPGRMPATAYGDHQGQRVARTAKAQTIDADVLIGYASIAGQPYYVHEKSPFQEDFDVGKLDSAGKLDTAATYLGQALASAHALADQDYDVSVVSYSIDKQVMEAATSKSGLKSELRAFAFDYAAQTQLDWQAFVEAYQAGTPLY
>NZ_CP011131.1|WP_057942214.1|1722029_1723046_+|M28-family-peptidase
MRRLRHLLYLLLILGALAGLALALVVQPFVAPRPSHPPAADPQRLRADVKYLSVDLYPRSYDQFDNIELAARYIHEQLRLSGAQVSYQDVVVEGVAYRNVIARFGPQTGPLRVIGAHYDSFADVGRDSDDARGYSPKTHTPGADDNASGVAGLLELARLLGRSPQARPIELVAYTLEEPPHFRSEHMGSAWHARALREAGREVEFMLSLEMIGRFSDRPGSQRYPVRGMHRLYSDRGDFVVVTGRMSDFGATRRIKAAMTGAGDLPVYSINAPPLLVQGVDFSDHLSYWHEGYPALMISDTAFLRSNTYHQASDTYDKLDYARMAKVVQAVYAVTQQP
>NZ_CP011131.1|WP_083512365.1|1723088_1723640_-|hypothetical-protein
MRSFKLVSVLLALALLSPMALAKPPYVEIEQRLTPEQLREVGLSAEQLATLNRMLREADDKTAPPVAEAAPQADGPAIGAGAPQTAGPAVGAGAPPVHRPGAGQFIGLNDEPIKSRLKHDVAGWEPGTVFELENGQQWKVLKGAMKLPKPMVKPEIVVIPGVAGRWFLQVDEDTPKARVYRID
>NZ_CP011131.1|WP_187313146.1|1724016_1724904_+|class-I-SAM-dependent-methyltransferase
MSEALSALIEHLRGDLTLDRPERLRERVDALDRIERLSLYLSDTPDTLALSAGIAAQQSRLDAVNERLYRNLRDAIRRGDGANCLREWMPVAEHADTDTSIAQGEGYDHLDALLGGIAQLHEPADDVAALMPEMVFYQPTPARHIFDLIRRIAPGADDVVLDVGSGLGHVPLLVGACTSARCIGVELEPAYVASARAAAADLRLSRVSFIQADARAADLSQATVFYLYTPFTGGVLGEMLERIREQAQRRDIRLCSLGPCTQVLAAQRWLRAIDVELHSDRIAVFVPCGNDDPAF
>NZ_CP011131.1|WP_148648786.1|1725403_1725787_-|hypothetical-protein
MRNMMALLYYLCALLGCDVGGTTIVNRSNDNGVDIIDSQVRISEQIAKFECRASRSGTCHYSLFRGQCANAAKSTPAQASQCTETAFERFDLAAGATREIIDIAPGFTLCVSDKSDAVGVDCKALAR
>NZ_CP011131.1|WP_057945335.1|1726001_1726769_-|response-regulator-transcription-factor
MTALVAEDETLLRRALVEALQVAWPQLRIVAECEDGAEALEALAEHCPDVAFLDIRMPGLTGLDIAAAAVDVSPQTQIVFVTAYDQHAIDAFEHGAIDYLLKPVTPERLAVTVQRLQARRNRGQSERDALTELAQRLTANRSAREDKPALTWITASAGRETRLILIDDVAYFRADNKYTTVVTADGEALLRKPIRELLDVLDGSRFKQIHRSTIVNLKAIAGIVRDDSGKGTMRLRDRPETLTVSQPFMALFKTM
>NZ_CP011131.1|WP_057942217.1|1726791_1728087_-|histidine-kinase
MLRSKPHAPDPYVIRSLFFVARLAAAWFGLFVMLALLAQAMPVLQHQDTGPLFLIATVVTIIVVITAFSHLRRVRLISGRIDANAIGNRQRRQIDVPLDDEETFHLLDAAIRELPRTQNVESARDSLQVRAKVESAEAGSHSAPGTANLYNWWMSTTRNRILATVTPDGEISRITLICEPESGAWSDWFRVDHGANLENAEAIVRAVNRRIAERRRNERADAARTSTEKELAVAKLSLLHAQVEPHFLYNTLASAQYLTRNDPPLADEMLGHLIEFLRRSLPRTEDALSTLGDELDRSRAYLEILKLRMGPRLELQLDVADELRAIALPPMMLQTLVENAIKHGLEPKPGGGTVWILARRNEDSIAITVADDGLGFNVLNSGTGIGLRNVRERLQLVYGAQAQLSIVANFPNGVAATIVVPAQPVTETQSV
>NZ_CP011131.1|WP_057942218.1|1728307_1729327_-|GGDEF-domain-containing-protein
MNMQEPQLQAFSERLLKVIQTQTEIAKLGLDLGDVMDLVATRAQTLTGAVGAVVELAEGDEMVYRAASGIAEPSLGMRLRRDASLSGHCVRDGAPLRCEDSETDPRVDLDACRAVGLRSMIVVPLKHNESVVGVLKVMARTPNAFNDDDLRLLDLMSGLIAAAMYHAAKYETNELFYQATHDALTGLPNRALFYDRLRHNLAQAHRESRRIGILNLDMDGLKPVNDHMGHRAGDAAIREFAERMKQSARAGDTVARIGGDEFAVILPRVEHREGVAAQMQRIAQSLRFAFEFEDRPITLDASIGCAVYPDDGEDLGVLLEKADQAMYRMKRSKKAGANS

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Crispr_ID: NZ_CP011131_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_7

1838361-1838441

Orphan

I-E

Consensus_repeat	Method
CTGGATTCCCGCTTTCGCGGGAATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011131_7

>merge|NZ_CP011131|7|1838361-1838441|CRISPRCasFinder
CTGGATTCCCGCTTTCGCGGGAATGACGGTCTGGAAGGATGGCGCTGAAGTCTCTGGATTCCCGCGTTCGCGGGAATGACG

>NZ_CP011131|7|5|1838361-1838441|CRISPRCasFinder
CTGGATTCCCGCTTTCGCGGGAATGACG	GTCTGGAAGGATGGCGCTGAAGTCT
CTGGATTCCCGCGTTCGCGGGAATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_057942306.1\|1836925_1837813_+\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143598
NZ_CP011131.1\|WP_083512378.1\|1849828_1851226_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|274368
NZ_CP011131.1\|WP_187313149.1\|1837913_1838228_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942302.1\|1829056_1830499_+\|two-component-system-sensor-histidine-kinase-CreC	unknown	unknown	gnl\|CDD\|236846
NZ_CP011131.1\|WP_057942311.1\|1844424_1846137_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NZ_CP011131.1\|WP_057942301.1\|1828377_1829049_+\|two-component-system-response-regulator-CreB	unknown	unknown	gnl\|CDD\|236838
NZ_CP011131.1\|WP_148648792.1\|1826838_1827033_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942309.1\|1840920_1842438_+\|glucan-biosynthesis-protein-G	unknown	unknown	gnl\|CDD\|377321
NZ_CP011131.1\|WP_057942304.1\|1832569_1834441_-\|DUF1266-domain-containing-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942307.1\|1838944_1839496_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP011131.1\|WP_057942312.1\|1846159_1847689_-\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|223326
NZ_CP011131.1\|WP_057942314.1\|1851235_1851943_-\|phosphate-regulon-transcriptional-regulator-PhoB	unknown	unknown	gnl\|CDD\|131209
NZ_CP011131.1\|WP_057942310.1\|1842434_1844354_+\|glucans-biosynthesis-glucosyltransferase-MdoH	unknown	unknown	gnl\|CDD\|235476
NZ_CP011131.1\|WP_083512862.1\|1834613_1836122_+\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|236960
NZ_CP011131.1\|WP_187313187.1\|1852577_1854278_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|227122
NZ_CP011131.1\|WP_057942305.1\|1836320_1836929_+\|N-acetyltransferase	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942308.1\|1839492_1840683_-\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340842
NZ_CP011131.1\|WP_057942300.1\|1827325_1828186_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509
NZ_CP011131.1\|WP_057942313.1\|1847704_1849789_-\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|235469
NZ_CP011131.1\|WP_057942303.1\|1830515_1832537_-\|DUF4034-domain-containing-protein	unknown	unknown	gnl\|CDD\|372523

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_057942306.1\|1836925_1837813_+\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143598	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	9.47975e-114
NZ_CP011131.1\|WP_083512378.1\|1849828_1851226_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	6.12241e-160
NZ_CP011131.1\|WP_057942302.1\|1829056_1830499_+\|two-component-system-sensor-histidine-kinase-CreC	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	0
NZ_CP011131.1\|WP_057942311.1\|1844424_1846137_+\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NZ_CP011131.1\|WP_057942301.1\|1828377_1829049_+\|two-component-system-response-regulator-CreB	gnl\|CDD\|236838	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional.	5.54454e-124
NZ_CP011131.1\|WP_057942309.1\|1840920_1842438_+\|glucan-biosynthesis-protein-G	gnl\|CDD\|377321	pfam04349, MdoG, Periplasmic glucan biosynthesis protein, MdoG. This family represents MdoG, a protein that is necessary for the synthesis of periplasmic glucans. The function of MdoG remains unknown. It has been suggested that it may catalyze the addition of branches to a linear glucan backbone.	0
NZ_CP011131.1\|WP_057942307.1\|1838944_1839496_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	2.64864e-16
NZ_CP011131.1\|WP_057942312.1\|1846159_1847689_-\|exopolyphosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	3.51222e-154
NZ_CP011131.1\|WP_057942314.1\|1851235_1851943_-\|phosphate-regulon-transcriptional-regulator-PhoB	gnl\|CDD\|131209	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	3.11902e-136
NZ_CP011131.1\|WP_057942310.1\|1842434_1844354_+\|glucans-biosynthesis-glucosyltransferase-MdoH	gnl\|CDD\|235476	PRK05454, PRK05454, glucans biosynthesis glucosyltransferase MdoH.	0
NZ_CP011131.1\|WP_083512862.1\|1834613_1836122_+\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|236960	PRK11715, PRK11715, cell envelope integrity protein CreD.	1.75933e-173
NZ_CP011131.1\|WP_187313187.1\|1852577_1854278_-\|M48-family-metallopeptidase	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	4.10455e-123
NZ_CP011131.1\|WP_057942308.1\|1839492_1840683_-\|glycosyltransferase-family-1-protein	gnl\|CDD\|340842	cd03814, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases and includes a sequence annotated as alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase from Bacillus halodurans. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.	1.32063e-126
NZ_CP011131.1\|WP_057942300.1\|1827325_1828186_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	5.75174e-111
NZ_CP011131.1\|WP_057942313.1\|1847704_1849789_-\|polyphosphate-kinase-1	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP011131.1\|WP_057942303.1\|1830515_1832537_-\|DUF4034-domain-containing-protein	gnl\|CDD\|372523	pfam13226, DUF4034, Domain of unknown function (DUF4034). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 280 amino acids in length. There is a conserved PRW sequence motif.	2.1051e-39

>NZ_CP011131.1|WP_187313149.1|1837913_1838228_+|hypothetical-protein
MLLQLQLQLQLQLLVLVLLQLLVLPPVFFCCCGASLVTRETEGHPKGGAHGRAPGPTLGRMPNVGPACVGIALVAFDSKQLKPFLWLLLTEGNPVGLCGFGQRK
>NZ_CP011131.1|WP_057942306.1|1836925_1837813_+|carbon-nitrogen-hydrolase-family-protein
MKVAVAKYTIGAPRSFAEFADKQTQWLSQARAGGAELAVLPEYLSLELGATFGAGTQGDLHASLVAIQAYHGAWLDLFGLLARELRMHVVAGSFLFDPGHGRYRNRSYAFAPDGGRLWQDKLQLTGFEKQAGVIEAGDTLKTFALGEQRAGIAICYDIEFPLPVRAQCEAGARLLLAPSCTDTAAGATRVRVGCLARALENRCFIAQSVTAGEALWSPALDTNTGEAAIYAPMDVGLPADGVLAQTRGGQRWAFADLDFAALQASRARAQVANDRDWMGQLRPGMLRARVEGFEG
>NZ_CP011131.1|WP_057942305.1|1836320_1836929_+|N-acetyltransferase
MKKPMPVIRSLAGAEITPYLDAIAALRIAVFRDWPYLYDGDAAYEAKYLRTYRDSWRSVAVLAFDGTRVVGASTGLPLVDEVPEFRAAFEGHLVDVDHVFYCGESVLLPEYRGLGVGHRFFDAREAHARALGGLRWTTFCAVEREPEDPRRPAFHRGNESFWKKRGYTYRPELKAQLPWNEVGRGERDHTLGFWLRPLERAR
>NZ_CP011131.1|WP_083512862.1|1834613_1836122_+|cell-envelope-integrity-protein-CreD
MSHHRSAQRLQPAVHIADRSKDMRVWLKMLMVLGMTLAILIPLLMIGGIISDRQMYRAQAVSTVARSYAGAQAFSGPALVVPYEDTWISEEKDDKGNIKRVAHREPGRWTYFPNKLAVEGDIAPKVRPLGLYKVLVYEWTGKAKADFTASIPANPVAEPGMTVSGITRSIGKPWLSYGFADVRGLRDPKLRLDGMDVAIEDGLGARDGGGIHARLAAPAPGTTLRLQTDLDFVLGGTESLALVPLGKDSRFSLRSSWPHPNYGGSFPPSSDSIGDKGFRADWRVSSVATNAQRQYLTGAILPSVAVVGNDAADSTVGGEINAVQITLKDPVNVYSQADRATKYGLLFVLLTFVGFFMFELIKQLRIHPIQYGLVGLALAIFFLLLVSLSEHIDFGLSYLIASVACIGLLVFYLSAVLGGVVRALGFGAMLVTLYGSLYGLLISEDNALVLGAGLLFLILATIMVVTRKVDWYQLGGAAPKREPANPRAMPARPLDPSDEAAV
>NZ_CP011131.1|WP_057942304.1|1832569_1834441_-|DUF1266-domain-containing-protein
MNATPAAARDVINADKVRAAIARRSRGRQDHADIARWLQTHFFRWTINSFEHVLPVRSVEGWRTCVGEPSPPAWFLSKLAAAGAPMIYIDPEHHLLREREARMVEFFHARLGSRLAGKFHRITFADAEAAWSKDHERMQRRSRRGWWPSQAHALTEVVATPHGRFVELRASGRTLRGELAYESFHMQHCLGQFAQRDRLEGGYGEHYALGCEQGRIRLFSLRDPNNGPHVTVSLIEDLGEWSLDQVKGKQNTIPDAKYAGDVLCLLNSVRPRDIGSLDLSRLGIVAQNEGFEVAYVAFADLRDAARRHALLGAFPHLLGQHPQPDPFAQWLALAGGAAVVGEVAAPHGPVVAALHAMNADEASMPDRERLSATLMEVFPQWLAPPLAQETSAPQGGWLRRLLMGGGASAVNQSAPHRQWALAVPELLFYRLGVDGDSRRGRLAAPPGTGDRLRAQIESELDIHDGRADAAIRAFCETFFRVPYLAHPMLVTPQQETHEAPSKQAPQPDAARDLLAWHAMRQSHLLRLLVAWNLLDETRGWALLLLNAQRVRDCFRDWSDFGSAAARGHATWLHWNGREAHRAKATQVALQDFQDEYDCAWKRLPWSAFDLTQAIAAQPIYATA
>NZ_CP011131.1|WP_057942303.1|1830515_1832537_-|DUF4034-domain-containing-protein
MAEIAALTVNEAVVERDSIDYDTWMRDQRWDDLERALTALRDQPDEQDEHDYATGYREFIAYTQRSGRAALDQLRQWQAQRPDSRFTALLEVAYWAAWFEQYRGSSTADQVTPAMWACARTAQDTLLCALARMLAQEQTAWPAITSVLYTVAAIGEPKWWKRWLLKGEAPRSLPSHGKPSDDIGELLARSGAAEAGAQYLQALPDRLADVLTGPALTWRRAQSNDDSAALQYWLRVALAMDPQALDAAVAYVSMRMPRWGGSWEEMLAFADSPLCAHFDEHDRNTLRFFAWFDELEVDDSAMLDDPRVLKHHLRLGQRLLERPLRENLRGRVHKYLAYLEAKAGRIDAACAHYALSAPHNEYQEWEIMRATTTWCGSGDKGPWLGQIAELNRLVTPHGAALYGLLCLNGWAGVARRPEVADGWFERAVKMTPDPSNVRDSPFNAMAALEEVFGPDALLPMWLKAAELGDASAQFCCGNHFAADRSRAIEYFRLAADNNHEVAMFNVASLSLIPIRDGEIAAAQVDAAASQAQDYLDRALARTEEVLQDDYTEFTEGQLETVKDLYGTLLHSDWPPLSARRRALPQVLKFAEAGRINSMISLAWWYGDKTLAGYRFDEAVRWVEAARHIDPDNEYVARVREFVEGDSFWSRLKFGMAQRKAKRQGLPGQDDTVL
>NZ_CP011131.1|WP_057942302.1|1829056_1830499_+|two-component-system-sensor-histidine-kinase-CreC
MRIGLRIFLGYFLIVALAATLLARVFVAEVKPGVRQAMEDTLVDTANILAELASDDFLAGRINDGDFAKRARALASREVSAAIWGFRKPAASYRVYVTDARGIVVFDSTGQDVGSDYSRWNDVYLTLRGRYGARSSPGEGGDPDDTVMHVAAPIRDDSGRIVGVLSVAKPNRAIAPFIARSQSVVTRWGFVLMGAALLIGVGVSWWLSRQIGLLRRYAHAVTAGGRAAPPRAAGEFGELGRALETMRSRLEGKQYVEQYVHTLTHEMKSPLAAIRGSAELLESPPGEGGMSDADRARFAGSIRGQAERLAQMIDKLLALAAVEHRQSLDRPEPVALAAIAQEAAEQCAQRLDRSGAKLLLDLEPNLAPVSGDAFLLRQALINLIDNAADFSPAGGEIVLRLRRDGDTQRIEVSDRGPGVPDYAVGRVFERFYSLPRPAGGSRSSGLGLCFVAEVASLHGGGAELVNRDEGGARASLSVPG
>NZ_CP011131.1|WP_057942301.1|1828377_1829049_+|two-component-system-response-regulator-CreB
MRILLVEDESAIADTVLYALRAEGFEAVHCLTGGEALREAQRTAFDLAVLDIGLPDIGGFALCRELRRGRDLPVIFLTAQNAEADRILGLEIGADDYVTKPFSPRELATRVRVVLRRAGAGSAPIEPEAGFVHDTEGKRIRFRGQALDLTRYEYGLLAALLQRPGAVLSRAQLMDRVWGDALDSGDRTVDTHIKTLRAKLREVAADSDPIRTHRGLGYSLEHD
>NZ_CP011131.1|WP_057942300.1|1827325_1828186_-|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MNYRHAFHAGNHADVLKHVALLALCDALTAKPAPLFALDTHAGRGLYPLDGNSALRTGEAEGGIGRLLAEAPKQPAIGRYLAAVRACRTEHGPSAYPGSPWLLSHALRADDRIAACELQPEEAEQLKHNFERDARIAVHQRDGYAAMKALLPPKFGATRYNRGLVLIDPPFEAQLEEFDTALGALREAQARWPQGSYVLWYPIKRRRALQPFYRRAATLPAKSILTAELLVRADDSPLRMNGSGLLVLNPPWQFDRVLSEALPVLARTLGETADAGSAVTWLKQAD
>NZ_CP011131.1|WP_148648792.1|1826838_1827033_-|hypothetical-protein
MLRKKVAILAVCAFAFGIGLATSAVAACNNTCRLGCERAHDTCTGSGCELAYIQCYRRCGCVLP
>NZ_CP011131.1|WP_057942307.1|1838944_1839496_-|phosphatase-PAP2-family-protein
MNRLPLRKRLIAGESGWCLRANRLGERSSSRAYFAAVSRLGDGVFWYALMAALILVDGYDGLRASAHLAATGVIALALYKLLKRWTRRPRPFASDQRIHAWVAPLDEFSFPSGHTLHAVAFSLVAMAHYPVLAWLLIPFTASVAASRVVLGLHYPSDVVAATVIGSTLAGFSLWLVPGVSLFG
>NZ_CP011131.1|WP_057942308.1|1839492_1840683_-|glycosyltransferase-family-1-protein
MRYAIVTETYPPEINGVALTVQGLERGLRARGHQVDLVRPRQDADGGGDGEAHELLVRGLPLPRYPGLRFGLPCAGRLIQAWKRDTPDAIYVATEGPLGGSALKAARRLGIPAATGFHTRFDEYMRDYGAPFLVGTALAWMRRFHNGADATLVPTRELAEFLRARGFEDVVRLPRAVDTELFDPRRRSAALRREWGLDDDGFAAIYVGRIAPEKNLDLAVRAFRALQQQRPQARFVWVGDGPAREKLQRDNPDFIFCGLKRGQVLAEHFASGDIFLFPSHSETFGNVTLEAMASGVPTVAFDYGAAHEHLRDGLHGAAIADGDDAGFIRAAARIGSQDALRAGMSRAGREAISGLRPQQVAADFDALLHGLAERNATGRGTLRRLNDETKPKQEVL
>NZ_CP011131.1|WP_057942309.1|1840920_1842438_+|glucan-biosynthesis-protein-G
MQRREILKAGLSLPLAGLAGGGLATVWAATGPGQAFAADTVPALARALAAKPYKAAGSDLPEALARIKYDTWRDIRFDPAQALWKSERLPFQLQFFHRAFLFKQRVDMHVVRGGVATPVVYTPKMFSFGQAPRPAQDDLGFAGFRVHAPINRADYFDEVCAFLGASYFRAVAKNLLYGLSARALALNTGAGNSEEFPAFTGFWIEQPASSAKRIVVHALLDSPSVAGALRFAITPGVETVFDTQLRLYPRVALSSVGIAPLTSMYHFDATDRVGIDDFRPAVHDSDGLAMHNGAGEQIWRPLHNPPSLQESAFQDRRPRAFGLMQRKRAFADYADSEAHYERRPSAWVEPVGDWGEGAVHLIEIPTKDEYQDNIVAFWRPRAPLAAGREHRYDYRLHWCARHAWTPSLATVARTRIGAGGNGARLVVIDLEGGGLSELAADAAPRAVVWSSAGRIANAVAHANPGTGGWRVSFELQPGDARTIELRAVLEDGGPLSETWLYRWTA
>NZ_CP011131.1|WP_057942310.1|1842434_1844354_+|glucans-biosynthesis-glucosyltransferase-MdoH
MNATVAPPQRPTSVPYEALPPESPMAMPVQSLRVGERPKGRLPSAPNAMAWRRLYVIGGAAALTLTAAYHILRVLYVGGLSLLEAVLLMLFVPLFAWIALAFSSSLAGFILILTRRRWRFGLKQGGELPVLGQRTALLMPTYNEDPERLMAGLQAIYESVVATGQLERFDFFILSDTTKEPVRQAEIRAFNALRERTGGHDRIFYRRRKNNAERKAGNISEWVRRFGSAYPHMLILDADSLMTGEVIVKLSGAMERNADVGLIQTLPMIVNGQTLFARMQQFAGRVYGPVIAYGIAWWHGAESNYWGHNAIIRTQAFADHAGLPELRGYKPFGGTVLSHDFVEAAFMRRGGWALHMVPGLVGSFEEGPPSLTDMLVRDRRWCQGNLQHGAVVSAKGLHWVSRMHMAMGIGHYFTAPMWAMLMLVGLIIPLDRVDYFKWQSIRLPGFSPSAYWRDQDPDRVLWVFVATMAVLLAPKFMAFLAMLTDRETRRGCGGAIRAFISMIFETLLAALMAPITMYVQSRGVAEVLAGKDSGWESQRRDDGSLPLSGLIRSYGGLTLFGLMIGAMAYVISPPLAAWMSPVIIGLVISIPVVAFTSAKAPGQWLRKIGIFRIPEEITPPPVLVRAKQLRIEAAQRSSN
>NZ_CP011131.1|WP_057942311.1|1844424_1846137_+|AMP-binding-protein
MSHARTSPDPALSHVVGATAPPLLEETIGAMLARVAATWPEREALVVPPQGVRLSWSAFDTAVSRLAAGLLKLGLAPGDRIGVWSLNRAEWVLLQFASARVGLILVNINPAYRTHELEYALNLVACRALAIVPSFKTSHYLQMLRELAPELDEHPPGLLRSRRLPDLRHVLSMGAGEPPAGTHAFDAVAACDDADAHARLREVAALLSPDDAVNIQFTSGTTGAPKGATLTHRNIVNNGFFVGEAMRLSEHDRLCIPVPFYHCFGMVLGNMACVTHGACMVIPGEGFDPLVTLRTVAEERCTGLHGVPTMFIGELEHPRFAEFDLSSLRTGIMAGSNCPIEVMKHVVERMHMQQVTIAYGMTETSPVSFQTVPEDPLARRVDSVGRVHPHVEVRIVDDNGDTVPRGEIGELLTRGYSVMQGYWGDPKRSAEAIDSGGWMHTGDQAVIDADGYAHIVGRLKDMLIRGGENVYPREIEEFLYAHPAIADVQVFGVPDAKFGEEVCAWIRVAEGASLDAEAVRAFCQGRIAQYKIPRYIEFVDNLPMTISGKPQKFLMRERMIERLAAAASDG
>NZ_CP011131.1|WP_057942312.1|1846159_1847689_-|exopolyphosphatase
MNNIFPTTRLPLQDGDLLAAVDLGSNSFHMVVARYVLGQLRTVDRLRETVRMAEGLDRKGGLAPEVRQRALDCLSRFGQRIRDVPPQHVRAIATNTVRRLAAPQSFLMPAESALGHAIEVVSGREEARLIYLGIAHAQPSKPGERRLVIDIGGGSTECIIGSGFEAIERESLQVGCIATTRRFFENGKLSKKKWRDALTEVSAEFQQFAGTYRALGWQEALGSSGTNKAIGEICAAMKLTKGAVTAEALPLLRDRLLQADRIDAIELPGLSADRRSVIAGGILILEAAFNVLGLQRMAISKAAMREGVLYDMLGRGGADDPRDAAVKALVKRYGIDEQQSARVEATMQRLFDQVAKAWQLDADDRLMLIRAARLHELGLVIAHSQYHVHSSYVIENSDISGFSRQQQQFLAALVRTHRRGIPKNAFEALPDRLLAAVRRSSALLRLAVLLHRAHESDPIPQLDAHADGNTLTLTVSKRWLESRPLVRADLEGEPQDMAGLGIALRLLAA
>NZ_CP011131.1|WP_057942313.1|1847704_1849789_-|polyphosphate-kinase-1
MNAMTETTLDTDPLRDSSLYFNRELSQLDFNFRVLAQAQDAQVPLLERLKYLCISCTNLDEFFEIRAGTLRHAQDLGLAPGPDGLAPQTVLSRIHDRAAELVKAQYECWNDVLRPALQDSGVRVLGRNSWNARQTRWLRAYFRDEIMPVLSPLGLDPAHPFPKILNKSLNIVVVLKGKDAFGRAGNLAIVRAPRSLPRIIQLPENVSGGKHDFVFLSSVLSAFVDELFPGMEVKGAYQFRVTRNSELLVDEEEVDNIALALRDELIGRGYLRAVRLEIAEQCPKPIVRTLLENFDLPENAVYRINGPVNLNRVIQVYDLVQRPELKFPPYQQRVLPGVETLFDTVADGDVLLHHPFDSFAPVLELIRQAAEDPNVLAIKQTLYRAGKDSPIVEQLVQAARNGKDVTVVVELRARFDEEANLGLADRLQEAGVQVVYGVVGYKTHAKMLLIVRREGRKLKRYTHLGTGNYHSGTARAYTDFGLITADPDIGNDVHMIFQQLSGLAPSLKLKCLLQSPFTLHAGVLKRIDRETKHARAGKPARIVAKMNALNEPQVIRALYQASQAGVQIDLIVRGACTLRPGVAGVSDNIRVRSIVGRFLEHHRVYWFANDGAPDLFCSSADWLERNLLRRVETGFPILDSELRGRVYEEALANYLADNLNSWELQSDGEYQRLAPAEGAMPHSAQSTLLAKLCG
>NZ_CP011131.1|WP_083512378.1|1849828_1851226_-|phosphate-regulon-sensor-histidine-kinase-PhoR
MPPRARSAWFRTLGQLALILVGAAVLGILIGYPWPIVTAAALGVVAWHYWRLRRVLIRLTARQRLTPPLGEGIWNELDRLLHRSQAEMRGRKRRLIEMLRAYRAAAAAMPDAIVVVERNSQRIQWFNEAATGLMGLRYPRDIGAPVVNRLQPLQLAHWLASGRNAEPLEAASPWNPAITLSLRLIPYSENLWLLVARDVSRLLQLEQMRRDFVANVSHELRTPLTVVHGYLDMLDPEEHPDWAPMLAEMQRQSQRMTQLVEDLLTLSRLESQDSLPAEETVSMSSMLSTLKREANALSQGRHEIAMDDLAGVDLFGSNKELHSAFSNLVGNAIRYTPAGGTIRIRFRPESAGIARGAVLEVVDSGYGIPAAHLPRITERFYRVSTSRSRESGGTGLGLSIVKHVLHLHGARLEIASEVGRGSTFACHFGVDRIRRRDAYNDGFADTGPDPAHHADLQQTLQHPSD
>NZ_CP011131.1|WP_057942314.1|1851235_1851943_-|phosphate-regulon-transcriptional-regulator-PhoB
MQKRILIVEDEPAIRDMVSFALRKGEYDPVHAGDAREAQAAIADRVPDLILLDWMLPGTSGLELARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVLRRSREDDEDGSVGVGPLRIDGAAHRVFAQGEGGDQPVQIGPTEYRLLHFFMTHPERVYSRTQLLDHVWGGSVYVEERTVDVHIRRLRKTLEPHRLDGMVQTVRGAGYRFSASLAA
>NZ_CP011131.1|WP_187313187.1|1852577_1854278_-|M48-family-metallopeptidase
MQATGRNTAGSAPPARPKEFRLRRIALLTAAVTFALASVCASAQENKLPDIGSSAAELLTPAKQREYGSMMLAQLRHYDYLLEDPLIDSWLDTLGTRLAANSDKPRQPFTFFMLRERQINAFATLGGYIGVNSGLVLTAEKEDEVAAVISHEIAHVTQQHVLRGVERAQRDQLPILLAMLGAIVAAQSAGSNSNDDATMAAITSGLGLMQQRQINYTRSNESEADRIGIQTLSRSNYDTTAMAGFFQRMQVVSRSNAANWYGETPDYLMTHPVTTTRISEAKERAEQLANKNSLTAVTSTPNAVRVERIPKAPFTLPPNAAGTDNPLLPSGLKLNDQALSSGGTGVFDYARERVRVMSANSPREAVREYEKLGGDSDAKRYGLALARMRSNQTAAAIASLSELLQKHPDQLWLSLALGEAEAQAGKIAAADARFEALLRQTPNNRAIALTYAKVLTDRATPAAGQRAQAVLRPLFGPYSDDPLLQQTFARACEIAGDSIRAGEAYAEAAYLRGRPEQALVQLNTLKRKPDLDYYARARIEARIAAITPTVLELKRQGVRDEDLKRQ

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Crispr_ID: NZ_CP011131_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_8

2242679-2242788

Orphan

Consensus_repeat	Method
ATGACGGTGTTGAGGGTTCTCGCGCGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011131_8

>merge|NZ_CP011131|8|2242679-2242788|CRISPRCasFinder
ATGACGGTGTTGAGGGTTCTCGCGCGAAAGGCCCTGGATGTTCGGCTCCGTCGAAGTAAAGCGGAGCCCGCCTTCGCGGGCATGACGGTCTTGAGGGTTCTCGCGCGAAA

>NZ_CP011131|8|6|2242679-2242788|CRISPRCasFinder
ATGACGGTGTTGAGGGTTCTCGCGCGAAA	GGCCCTGGATGTTCGGCTCCGTCGAAGTAAAGCGGAGCCCGCCTTCGCGGGC
ATGACGGTCTTGAGGGTTCTCGCGCGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_148648820.1\|2250951_2251212_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_148648703.1\|2252052_2253194_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP011131.1\|WP_057945383.1\|2250630_2250942_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942583.1\|2233008_2235810_+\|autotransporter-serine-protease	unknown	unknown	gnl\|CDD\|173794
NZ_CP011131.1\|WP_057942580.1\|2230133_2230562_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NZ_CP011131.1\|WP_057942589.1\|2247035_2248814_+\|proprotein-convertase-P-domain-containing-protein	unknown	unknown	gnl\|CDD\|366670
NZ_CP011131.1\|WP_083512418.1\|2239663_2241829_+\|C1-family-peptidase	unknown	unknown	gnl\|CDD\|239110
NZ_CP011131.1\|WP_057942588.1\|2242988_2246576_+\|methylmalonyl-CoA-mutase-family-protein	unknown	unknown	gnl\|CDD\|239650
NZ_CP011131.1\|WP_057942585.1\|2237241_2237994_-\|carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|239398
NZ_CP011131.1\|WP_057942581.1\|2230754_2231132_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NZ_CP011131.1\|WP_148648821.1\|2251338_2251686_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942587.1\|2242060_2242378_-\|YXWGXW-repeat-containing-protein	unknown	unknown	gnl\|CDD\|378944
NZ_CP011131.1\|WP_148648819.1\|2249260_2249653_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942591.1\|2249649_2250462_+\|zeta-toxin-family-protein	unknown	unknown	gnl\|CDD\|368892
NZ_CP011131.1\|WP_057942582.1\|2231254_2232430_-\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|180261
NZ_CP011131.1\|WP_083512419.1\|2251697_2252078_+\|zeta-toxin-family-protein	unknown	unknown	gnl\|CDD\|368892
NZ_CP011131.1\|WP_148649185.1\|2253345_2253732_-\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|365866
NZ_CP011131.1\|WP_057942584.1\|2236082_2237240_-\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NZ_CP011131.1\|WP_148648818.1\|2232690_2232906_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942586.1\|2238147_2239251_-\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_148648703.1\|2252052_2253194_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.20077e-65
NZ_CP011131.1\|WP_057942583.1\|2233008_2235810_+\|autotransporter-serine-protease	gnl\|CDD\|173794	cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.	1.11315e-68
NZ_CP011131.1\|WP_057942580.1\|2230133_2230562_-\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.000714092
NZ_CP011131.1\|WP_057942589.1\|2247035_2248814_+\|proprotein-convertase-P-domain-containing-protein	gnl\|CDD\|366670	pfam01483, P_proprotein, Proprotein convertase P-domain. A unique feature of the eukaryotic subtilisin-like proprotein convertases is the presence of an additional highly conserved sequence of approximately 150 residues (P domain) located immediately downstream of the catalytic domain.	5.54611e-11
NZ_CP011131.1\|WP_083512418.1\|2239663_2241829_+\|C1-family-peptidase	gnl\|CDD\|239110	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues.	4.96035e-43
NZ_CP011131.1\|WP_057942588.1\|2242988_2246576_+\|methylmalonyl-CoA-mutase-family-protein	gnl\|CDD\|239650	cd03678, MM_CoA_mutase_1, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, unknown subfamily 1; composed of uncharacterized bacterial proteins containing a C-terminal MCM domain. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In some bacteria, MCM is involved in the reverse metabolic reaction, the rearrangement of succinyl-CoA to methylmalonyl-CoA. Members of this subfamily also contain an N-terminal coenzyme B12 binding domain followed by a domain similar to the E. coli ArgK membrane ATPase.	0
NZ_CP011131.1\|WP_057942585.1\|2237241_2237994_-\|carbonic-anhydrase-family-protein	gnl\|CDD\|239398	cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carbon dioxide or carbonic acid, or in sensing carbon dioxide levels in the environment. Dioscorin is the major storage protein of yam tubers and may play a role as an antioxidant. Tobacco Nectarin may play a role in the maintenace of pH and oxidative balance in nectar. Mollusc nacrein may participate in calcium carbonate crystal formation of the nacreous layer. This subfamily also includes three alpha carbonic anhydrases from Chlamydomonas reinhardtii (CAH 1-3). CAHs1-2 are localized in the periplasmic space. CAH1 faciliates the movement of carbon dioxide across the plasma membrane when the medium is alkaline. CAH3 is localized to the thylakoid lumen and provides CO2 to Rubisco.	2.10988e-75
NZ_CP011131.1\|WP_057942581.1\|2230754_2231132_-\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.00905616
NZ_CP011131.1\|WP_057942587.1\|2242060_2242378_-\|YXWGXW-repeat-containing-protein	gnl\|CDD\|378944	pfam12779, YXWGXW, YXWGXW repeat (2 copies). This short repeat contains the motif YXWXXGXW where X can be any amino acid. It is generally found in 2-5 copies in short secreted bacterial proteins. Its function is as yet unknown.	0.00773937
NZ_CP011131.1\|WP_057942591.1\|2249649_2250462_+\|zeta-toxin-family-protein	gnl\|CDD\|368892	pfam06414, Zeta_toxin, Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.	2.25212e-40
NZ_CP011131.1\|WP_057942582.1\|2231254_2232430_-\|thiolase-family-protein	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	1.23311e-176
NZ_CP011131.1\|WP_083512419.1\|2251697_2252078_+\|zeta-toxin-family-protein	gnl\|CDD\|368892	pfam06414, Zeta_toxin, Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.	5.71285e-17
NZ_CP011131.1\|WP_148649185.1\|2253345_2253732_-\|trypsin-like-serine-protease	gnl\|CDD\|365866	pfam00089, Trypsin, Trypsin.	0.00082601
NZ_CP011131.1\|WP_057942584.1\|2236082_2237240_-\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
NZ_CP011131.1\|WP_057942586.1\|2238147_2239251_-\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	1.13204e-99

>NZ_CP011131.1|WP_057942587.1|2242060_2242378_-|YXWGXW-repeat-containing-protein
MAMRPLMLAAVLGVATLAGAHAPLAQARTYVGVDVRVAPPPPRYERVRVRPGYVWAPGHWRWDGRGYYWVGGAYVVSRPGYVYVGPRWHAYGPAWRFHPGRWERR
>NZ_CP011131.1|WP_083512418.1|2239663_2241829_+|C1-family-peptidase
MATARNAAVSRKRTTAARAATTAERPARRAGKTAAKAAVKKTAPKLHSRLLDARPDTADFRDSMFEPTLVEVPSHKPLSEHLKLRLPVLDQGDEGACTAFGLAAVAHALLRRRNPRARLAPVSTRMLYDMARRYDEWRGEKYSGSSCRGAMKGWHHHGVCSEKIWPYKVGDSIETYTEQRARDATLRPLGAYFRVNHKDLVAMHAAFAEVGVLYASAAVHDGWDDPVRGRIAWKRQEIAGYHAFAIVGYDEGGFWIQNSWGKTWGLNGYGYISYDEWLERGTDVWVARLAVPVRLHNAQSSAVSHSSVARQSTGYSQADLRPHIVSLGNNGRLRDDGRFGTNADDVRNLIRKDLPRITADWEKKRVLLYAHGGLVPEQGAIQRVADYRQTLLGKQIYPLSFIWKTDAWSTLGNILRDVAKPRSEGVVDKAKDLLLDRFDDTLEPLARAAGGKLMWDEIKENGLLATTARTPLANGTVQEAGGAALVARLLDEWIARDPKLELHLAGHSAGSILLAPLVQLLTTQGVVPSGPAVGMQGLGRQIETLTLWAPAITVDLFLDTYAPALRSGAIKRMALFTLTDKAENDDHCAGIYHKSLLYLVAHSFERQPRTWINKRYRHGTPLLGMARFLDRDAAQGSVELRELIDSGRIDWIQSPTAGAPDGSPDASAATTHGGFDDDRATLAATLARILGQAGTTASFDIHRSEAGNADRRSAIARAVNK
>NZ_CP011131.1|WP_057942586.1|2238147_2239251_-|Glu/Leu/Phe/Val-dehydrogenase
MIFETLDTFGHEQVVFCHNKDAGLKAIIAIHNTVLGPALGGLRMWPYKTEQDALNDVLRLSRGMTYKNAVAGLNIGGGKAVIIGDPSADKSEALFRAFGKFVDSLGGRYITAEDVGIDVNDMEYVYRETEYVTGVHQVHGGSGDPSPFTAYGTLQGLMASLNKRFGDEEVGKYSYAVQGLGHVGMEFVKLLKERGAKIFVTDINKGLVEKAVSEYGAEAVGLDEIYDVNADVYSPCALGGTVNEQTLPRLKAKIICGAANNQLANNAIGDEVAKRGILYAPDYAVNAGGVMNVALELDGYNRERAMRMMRTIYHNLGRIFEIAERDSIPTYTAADRLAEERISAIGKLKLPLGRSNPSFRGRIRSGH
>NZ_CP011131.1|WP_057942585.1|2237241_2237994_-|carbonic-anhydrase-family-protein
MRKHTFATLIALSLAFAAQAGEPAKPAAHAAHDALDYEHQEQWQAAHDKSQSPIDIVTSSAVAAADNEPRALEFQHTRGGIDKVEDNGHAVQVDTHATQATIRGRHFTLAQFHFHAQSEHTLDGKHFPLEGHFVFKAQDGRLAVVGVMYEQGKANAVAQEVLDDLKPRKNKAKPAQQEIDIEGLLPKSRGYFHYLGSLTTPPLTENVEWYVLPAPVTMSKKQIDGFLSHYRRNNRNIQPLNGRPLIRYEG
>NZ_CP011131.1|WP_057942584.1|2236082_2237240_-|isovaleryl-CoA-dehydrogenase
MRSFPLGEEIDALRDAVRRFADAEIAPRAEQIDHDNAFPQDLWLKLGEMGLLGMTVPGEYGGSEMGYLAHLVAMEEISRASGSVGLSYGAHSNLCVSNLYANANEAQRRKYLPKLCSGEWKGALAMSEPGAGSDVVGSMSCRAELKDGVWVANGNKMWITNGPEADVLIVYMRTAGKSAGSKCMTAFIVEKGMKGFSTAQKLDKLGMRGSNTCELVFEDCEIPAENVLGEVHHGVKVLMSGLNTERLVLTGGPLGLMQSALDIALPYVRERKQFDVAIGTFSLMQGKIADMYTALQSSRAFAYQVGRDFDAGHKSRIDSASCLLHASDAAVQVALEAIQTLGGNGYINEYPTGRILRDAKLYAIGAGTNEIRRMLIGRELFDGKS
>NZ_CP011131.1|WP_057942583.1|2233008_2235810_+|autotransporter-serine-protease
MKRFESAVRRNSRLVLCALSVAILSACGGGGGGGDNVKPTPPPTNNPPPPPSAPPPPIGAHLDLTNTRSAQAQGLTGAGIRIGVVDSGVRRDHPALNGRVGPMLIYTDPRTNNHRVDDVLGHGTFVSQIAAGTPVGAWPGGIAQGATIVSARILADTRPADDGSGMGNEVRDAGGLDIVSRDLMNAGVRIMNNSWGGLYWTGDNVTQSFIAAYKPFIDNGGLVVFATGNESKPQPSDNASLPSQGAGANVLERGWIAAAALDTNNPTQLASYSNACGIAMNYCLVAPGDVQATGVNDAVGSPSYWVVRGTSFAAPQISGAAALVWQAFPYFNNDLVRQALLGNAKDLGAPGVDPVFGQGLLDVGAAVRGLRRLDWGDVRVNFDGASTWSNPISGAGGLIKEGAGTLRLDASSANTYTGATDVAGGTLRLNDNGSLASPVTVRAGATFAGGNGAKVANRIDNQGAVRVEGAGLRIDGNYAQSAAGQLQFFIGSKLDVGGSASLAGDARVLGQLPGYVRSNHEVFLNAGSVSGQFASLSTAPGVFLTATLGYSTTQAWLDISALNITATAQALGMQASETAAAARVDGALRGLDNGAVVSGGAGAQGAFNAAAGALQQSATPQIAQRSLASLSGELHSADAAFAMMAIEGNRRALESRLDAQYLDRHDGAWSDRIDTQRVAAGRFDLDARGWIVGHDQRLGALSVGAAVSQTDGYAYTQLRRDRERNRQIEGQFYASWDRGGSYVMGRAAFGNMDRYLQREIQLGAAQFGTGSNYADRYINLGVQAGHRFELRNGLLTPYLGAQSLRLNRDGFQEAGAAGFGLSAGDSNLSATQLLAGARLEREWRLGSALLSLSGRAEWQRTVAQSGRFIDARFTGLEVWSPIVSDPFSREAGVLGVGLSARFARGGVLSLDLDNRYEFGRQYPRALANWSFSF
>NZ_CP011131.1|WP_148648818.1|2232690_2232906_-|hypothetical-protein
MELLRKSGGNKVRGALDGGFGPKFGAEFGLSPAEIAEVKSAYPDTTAPIDPQRRSGAIRYPAPGSGEFRPG
>NZ_CP011131.1|WP_057942582.1|2231254_2232430_-|thiolase-family-protein
MSDVVIVGAKRTAIGSFLGQFTGVPTPTLGSAAITGALEQAGVAADQIDEVIMGCVLPAGLGQAPARQAALGANLPTSAGCTTINKVCGSGMKAIMLGHDLIKAGSAKLVVAGGMESMTNAPHLLNNSRTGIRYGSAEMLDHMAWDGLTNPYDGKAMGVFGDAACAKYGFDRAAIDAYSEESVKRAQAAQAAGHFKAEIVSVTVKGRKGDVVVDADEEPGKIDVSKIPGLRPAFGKDGVLTAAASSKISDGAAATVLMSAEEAAARGLKPLARIVAHAGHAQAPEWFTTAPVKAISNVLEKAGWKVEDVDLFEVNEAFSVVAMAPMKDLGIAHEKINVHGGAVALGHPIGASGARLVVTLINALRVRGGKRGVASLCIGGGEATAIAIELV
>NZ_CP011131.1|WP_057942581.1|2230754_2231132_-|hypothetical-protein
MNFNKALIALALGLALAACSNQKQAEQASADAAAASTEAQAAADTAAAAGDAATADAAAASADAAATAADAAATSADAAANAATPAAADAAADAAKGAADVAGAAADAAKDAAAPAEAAKEEAKK
>NZ_CP011131.1|WP_057942580.1|2230133_2230562_-|hypothetical-protein
MKTHLYVLLAAAVLALSACAQKSEEAKDAAAEASAAAEQAGDAAAKAADAAGTAAAAGADAAAAATTDAAAAAGAAAGNAADSAAAAADSAAAAAGNAADAAAAGATDAAAKAANATADAAQKVADKADAAAAEAKKEEAKH
>NZ_CP011131.1|WP_057942588.1|2242988_2246576_+|methylmalonyl-CoA-mutase-family-protein
MSTTAAQIPAAQPDATPLRFVTAASLFDGHDAAINIMRRLIQGQGAEVVHLGHNRSVEDVVRAALQEDADGIALSSYQGGHVEYFKYMVDMLRERGAGHIRVFGGGGGTITPEEIRELQAYGVERIYHPNDGMHMGLVAMIEDVVRRASEGRIADTTPDKPAAIDDEITIGKMLSAIEEGTLDESQLAHLRKQWQLAGGKTPVVGITGTGGAGKSSVTDELLNRFLANFPDMRMAVISVDPTRRRTGGALLGDRIRMNSLRSPRVYMRSMATRRQNAATNTVLKDCIGLLRGLGYDLVIVETAGIGQSDSEIVDLVDFPMYVMTSDFGAPSQLEKIDMLDYAELVVLNKFDKRGAEDALRDVRKQWKRNRVAFATPDEDVPVYPTIASQFNDPGISWMFVNLCRLLREKLSLPAEKWSPQVDTSLKEPRATVLIPGARVRYLAEIAEQGRSINRQIESQSEVADRAQSYWQSLHDLEDPELPKALDLYRAEALLPGHPHPGPLPRPEGSHLGWQAGEGEGAASNTSPAGGRGRAEGAGEGRPVAVDRTLLTLRQRYNDAVQTLSSEALKLLRDWPQRLKSITDDITEYEVRGKAIRVENYRDSLSHQKIPKIAAPAYKSWGELLTFLQKENLPGYYPYTGGVYPYRRTGEDPIRMFAGEGTPERTNRRFHYLSVGQPAARLSTAFDSVTLYGEDPAVRPDIFGKIGNSGVNIASLDDMKKLYSGFDLCAPTTSVSMTINGPAPMLLAMFMNTAIDQQVEKYLREDGARWDAAHDKIEAIFKDRNRPQYSGLLPETNDGLGLGLLGITGDQVVDAETYQRIKDKTLATVRGTVQADILKEDQAQNTCIFSTEFALRMMGDIQQYFVDKNVRNFYSVSISGYHIAEAGANPISQLAFTLSNGFTIVEYYLARGMKIDDFAPNLSFFFSNGMDPEYTVIGRVARRIWARAMRERYGADPRSQMMKYHIQTSGRSLHAQEIQFNDIRTTLQALYALFDNCNSLHTNAYDEAITTPTEESVRRAVAIQMIINKELGLNFNENPWQGSFAVDYLTDIVEEAVYKEFEAISERGGVLGAMDTMYQRGKIQEESLYYEHKKHDGSLPLVGVNTFLPKDHGGDIVTEIELIRSTPEEKGQQIDNVLSYQQGRNDYASEGLRSLQAAARDRKNVFASLMEAVKTHSLGQISHALYDVGGEYRRNM
>NZ_CP011131.1|WP_057942589.1|2247035_2248814_+|proprotein-convertase-P-domain-containing-protein
MTIPKRRLRALAYRACAFVLVALAATVSAHAQAAVPSAARAIGDFSLGMEPAAIATSRESTVSTYVVLTSIDQYNKPTALGVADLPQGITASFSQSSITPQANGSVRSKLTLAVAAGVAVGSYPITVTGSYGELARSATVNLTVTADSGFKVMVAGTQHITLIGESSQLPVTVAGYAFNEPVTLAVSGVPAGVSANFSLNPVNPGAKAAVNSTLTFSASTQAVQGQYPITITGTAGNIVRSASLTLYVNPKPDFALWTIGRSRALVAVTQHAGISGWLEINARPLHAWDQPIAFSIEGLPPGVSATFSPAVVNPYGPTSIAFTASAEAPVGNFEASIVGTGGSTTHRLPVQLTVLPYLDPNRLLNNVTRVGISLRAGESMLFNIMKPESSSLFYSFTSQIGFGTGTGTFYVREGAPPTETDFHCRSTGRWGTYCEIERNPRAYFPMTYFLLIKADTDMTGASIMANYGYDGRSSEWRSNPTDYLINDNTVVESPITASDLSGNAGFVSVTYRLNHPYRTDLKVELIAPDGQAYLLRDHVNGPINPSVVHTFDFTDKVANGAWKLRVTDDTLGGSGVLLDWSLGFFGVAPPAR
>NZ_CP011131.1|WP_148648819.1|2249260_2249653_+|hypothetical-protein
MSIFGRMLKNIMSPSRSSALIPPEVPAQLRELLRDYPAYVESLQTVLNEFAEPTPRVQPLDEAIWALQNRLDRFLQEAVRQLEVARVDGNLLLIDEASRARSTMGRALLSFDSDPDGLGRYFKLHKKAFE
>NZ_CP011131.1|WP_057942591.1|2249649_2250462_+|zeta-toxin-family-protein
MTSQERALDIRIGETIFWDQIVPDSGMEQAASHSQPKAIFLVGQPGAGKSALTGMARADLGNDLIMIDPDRLRSYWPGLRELRNANPYTWSLDTDHDVGLWAAALQEVAVRGRKNIIIDTTLNDAESLLEQIRLLQAEGYEVQVRAVAVHRMESELAADARFLSGFLRDGHGLYHQETFRKQCYENMPSSLDYVRSQTEIPIRIFNCDGLEIYDSRINPAPPGAALEQAREARLANPKVTKAVHMGLQKQLALHQDLPEILARMTGAPMA
>NZ_CP011131.1|WP_057945383.1|2250630_2250942_+|hypothetical-protein
MLKDYPEHIERLQELLAEFVEPKSRLQPYDEAVWTLEDAMSGFLGDANKELKAAEASGDAVAIEKAAAKAKVMSRARSGNIGLGGRSLQELWEYFQANKEAFE
>NZ_CP011131.1|WP_148648820.1|2250951_2251212_+|hypothetical-protein
MNMPSSLDHVRSQTGIPIRIFNCDGLEVYDSRINPAPPGAALEQAREARLADPKVTKAVHMGLQKQLALHRDLPEILARMTEPPMP
>NZ_CP011131.1|WP_148648821.1|2251338_2251686_+|hypothetical-protein
MSRLTPPPVPFKLREMLKGYPEHLARLQEVLNEFAEPQSRVQPFDEAVWALQDTLEAFMHEAEAEQKVAESDNDPEAVEKAKEKASLMSRASFKHRWIDDEGLEKYFEENKGAFE
>NZ_CP011131.1|WP_083512419.1|2251697_2252078_+|zeta-toxin-family-protein
MDKEAHAKIFAERVLPDSGFSEATTQAKPRAIILAGQPGAGKTGLVKEAMREFKGDAVLVDPDELRKYVPNLKELQQAKPLGWSGDTLKDSSKWGNQLNRPGFRRHLAAINYGLSGGGYEREAIHR
>NZ_CP011131.1|WP_148648703.1|2252052_2253194_+|IS3-family-transposase
MSAKRYTDEFKIEAVRQIVEYGRPVAEVAERLGVSVHSLYGWRRQQGKSDVVRRVEKDQNADVRRLKAELRRVTEERDIPKKSRRVLCQGVKVKYAFMKQHADEFGLAAMCRVLGINRSGYYAWLHAPASARARDDQRLLGLIKHSWLESGSIYGHRKITTDLRELGETCSKHRVARLMKQEGLRAMVGYGRRPRPLSGPIGAVANNVLAREFTAQEPNRAWVTDITYIRTHEGFLYLAVVLDLFSRRIVGWATRPTQHSDLVLQALLAAVWRRKPAPGLLLHSDQGSQFTSEDWQSFLKAHGIVCSMSRRGNCHDNAAMESFFQLLKRERVKQRIYHTHDKARGDVFDYIELFYNPKRRHSSNNGLSPIEFERRYALNG
>NZ_CP011131.1|WP_148649185.1|2253345_2253732_-|trypsin-like-serine-protease
MRQHRCALALPALNQRPHSSADTGHSLNCRRPVARRPYRDLIFRTASYADDTGPPDGTVTGLIQTTACAEGGDSGGSFITSAGQAQGVLSGGSGSCKGRQGRTGRGNSYYTPINSILSAYALTLRTSP

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Crispr_ID: NZ_CP011131_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_9

2509416-2509522

Orphan

Consensus_repeat	Method
TCGGCGGAGCCGAACATCTAGAGACTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011131_9

>merge|NZ_CP011131|9|2509416-2509522|CRISPRCasFinder
TCGGCGGAGCCGAACATCTAGAGACTTCGGCCCCATCCCTCCAGGCCGTCATTCCCGCGAATGCGGGCTCCGCTTTACTTCGGCGGAGCCGAACATCCAGAGACTTC

>NZ_CP011131|9|7|2509416-2509522|CRISPRCasFinder
TCGGCGGAGCCGAACATCTAGAGACTTC	GGCCCCATCCCTCCAGGCCGTCATTCCCGCGAATGCGGGCTCCGCTTTACT
TCGGCGGAGCCGAACATCCAGAGACTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_057942796.1\|2516655_2517783_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP011131.1\|WP_057942789.1\|2505332_2505848_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237625
NZ_CP011131.1\|WP_057942786.1\|2501107_2501509_+\|ferric-iron-uptake-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236527
NZ_CP011131.1\|WP_083512446.1\|2515228_2515966_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_CP011131.1\|WP_057942799.1\|2521957_2522434_+\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
NZ_CP011131.1\|WP_057942800.1\|2522464_2523412_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226706
NZ_CP011131.1\|WP_057942794.1\|2513180_2515109_+\|DUF3857-and-transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379003
NZ_CP011131.1\|WP_057942783.1\|2499715_2500180_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	unknown	unknown	gnl\|CDD\|176855
NZ_CP011131.1\|WP_057942788.1\|2504103_2505156_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP011131.1\|WP_057942798.1\|2518236_2521482_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP011131.1\|WP_057942785.1\|2500488_2500896_-\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|225465
NZ_CP011131.1\|WP_057942784.1\|2500176_2500443_+\|RnfH-family-protein	unknown	unknown	gnl\|CDD\|234982
NZ_CP011131.1\|WP_057942791.1\|2508125_2509259_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NZ_CP011131.1\|WP_057942790.1\|2506045_2507962_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP011131.1\|WP_057942782.1\|2498951_2499464_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NZ_CP011131.1\|WP_057942792.1\|2509662_2512386_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942801.1\|2523449_2525180_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_CP011131.1\|WP_148648841.1\|2512382_2512970_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942797.1\|2517782_2518229_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942787.1\|2502116_2503799_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_057942796.1\|2516655_2517783_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP011131.1\|WP_057942789.1\|2505332_2505848_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237625	PRK14147, PRK14147, heat shock protein GrpE; Provisional.	7.53793e-73
NZ_CP011131.1\|WP_057942786.1\|2501107_2501509_+\|ferric-iron-uptake-transcriptional-regulator	gnl\|CDD\|236527	PRK09462, fur, ferric uptake regulator; Provisional.	3.36232e-52
NZ_CP011131.1\|WP_083512446.1\|2515228_2515966_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	1.0964e-93
NZ_CP011131.1\|WP_057942799.1\|2521957_2522434_+\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	2.06368e-82
NZ_CP011131.1\|WP_057942800.1\|2522464_2523412_+\|hypothetical-protein	gnl\|CDD\|226706	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown].	3.30994e-46
NZ_CP011131.1\|WP_057942794.1\|2513180_2515109_+\|DUF3857-and-transglutaminase-domain-containing-protein	gnl\|CDD\|379003	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857). This family is based on the first domain of the PDB structure Structure 3KD4(residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase (3ebi, Z=10, rmsd 3.6A for 152 CA, seq id 12%), despite lack of any significant sequence similarity.	1.18829e-20
NZ_CP011131.1\|WP_057942783.1\|2499715_2500180_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	gnl\|CDD\|176855	cd07813, COQ10p_like, Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	7.42067e-59
NZ_CP011131.1\|WP_057942788.1\|2504103_2505156_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	7.41436e-135
NZ_CP011131.1\|WP_057942798.1\|2518236_2521482_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP011131.1\|WP_057942785.1\|2500488_2500896_-\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|225465	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane].	6.22742e-31
NZ_CP011131.1\|WP_057942784.1\|2500176_2500443_+\|RnfH-family-protein	gnl\|CDD\|234982	PRK01777, PRK01777, RnfH family protein.	3.30642e-22
NZ_CP011131.1\|WP_057942791.1\|2508125_2509259_+\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NZ_CP011131.1\|WP_057942790.1\|2506045_2507962_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP011131.1\|WP_057942782.1\|2498951_2499464_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	2.06609e-81
NZ_CP011131.1\|WP_057942801.1\|2523449_2525180_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_CP011131.1\|WP_057942787.1\|2502116_2503799_-\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0

>NZ_CP011131.1|WP_057942791.1|2508125_2509259_+|molecular-chaperone-DnaJ
MSKRDYYEVLGVARNASDDDLKKAYRRCAMKHHPDRNPGDSAAEAAFKECKEAYEVLADANKRRAYDQHGHAAFEHGMGGNGGGGPGFADMGDIFGDIFGNIFGGGGGGARGPRRGADIGYVMELSLEEAVGGVEKQIEIPTLDACESCKGSGSSDGKVETCTTCNGRGQVRFQRGIFSMQQACPHCNGRGQTIANPCGDCHGQGRIERTKTLSVKIPAGVDNGDRIRLTGEGEAGPAGSPPGDLYVEVRVREHDIFQRDGDDLHCDVPIRISQAALGDIIRVPTLGGEVELRIPFETQSGKLFRLRDKGVKSVRSRKTGDLYCRVVVETPVNLTVEQRELLEKFEATFVGEGARKHSPRSSTFLDGVKGFWDRMTS
>NZ_CP011131.1|WP_057942790.1|2506045_2507962_+|molecular-chaperone-DnaK
MGKIIGIDLGTTNSCVAIMEGGKAKVIENSEGDRTTPSIVAFTKDGEVLVGASAKRQAVTNPKNTFYAVKRLIGRKMTDAEVQKDLGLVPYAIVPHDNGDAWVSTLDGKKMAPQQISAEVLGKMKKTAEAYLGEPVTEAVITVPAYFNDSQRQATKDAGKIAGLDVKRIINEPTAAALAYGMDKKGGDRKVAVYDLGGGTFDVSIIEIASVDGEMQVEVLSTNGDTFLGGEDFDKRVIDYLVEEFQKDQGIDLRKDPLALQRLKDAAERAKIELSSSQQTEVNLPYVTADASGPKHLNIKLTRAKLESLVEDLVKKTIEPCRIALNDAGLRASDVAEVILVGGQTRMPKVSQAVAEFFGKEPRKDVNPDEAVAVGAAIQGGVLAGEVKDVLLLDVTPLSLGIETLGGVFTKIIEKNTTVPTKASQTFSTAEDNQSAVTVHVLQGEREQARFNKSLARFDLSGIEPSPRGMPQVEVSFDIDANGILHVSAKDKKTNKEQKVEIKAGSGLSEEEIAKMVADAEANREEDQKFHELVQARNHADGLIHMTRSTIKEHGEKLPGDQIGRAEAAISELETAMKGDDKGQIEAKSKALEEAAQTLLAAVNAGQPGEEAPAGNGASAKADDVVDAEFTEVKDDKK
>NZ_CP011131.1|WP_057942789.1|2505332_2505848_+|nucleotide-exchange-factor-GrpE
MNQNDPNPDLNLDAQDPAPVAELSEVETLRAELNKLREDSLRERAELDNQRKRVARDIEMARKFANERLLGALLPVIDSLEAGLAIAGNEAGALREGMELTLRQLLKVADDNGLVAVDPAGQPFNPEHHQAMSMVPAPGVAPNHVVQVYQKGWLLNDRLLRPALVVVAQDG
>NZ_CP011131.1|WP_057942788.1|2504103_2505156_+|heat-inducible-transcriptional-repressor-HrcA
MSRRPPNPSLDPRARQLLRTLIGRYIHSGEPVGSQTLARHAGLDVSAATIRNILSDLEDAGLLSAPHSSAGRIPTSQGYRLFVDSLLQVRPLPDGEVARLRSELPSGTGTQALLGSASELLSAMTHFVGVVSVPKREQFAFRRIDFVPLDAQRVLAILVFADQDVQNRIIQTRRPYEAGELERVGNYLNAHFAGRPVAEIRATLLLELRNAQSEMQTLLAQSVELAEQVLTPDGDDMVLAGQTRLMGVQELADLDRLRELFEAFARKREILQLLERTVQAPGVRIFIGEETGLAPLEGVSLVTAPYTAGGRVLGVLGVIGPTRMAYDRVIPVVQAAADALGNAFQTTEAE
>NZ_CP011131.1|WP_057942787.1|2502116_2503799_-|DNA-repair-protein-RecN
MLAHLSLKQFAVVSAAELSFGPGLTVISGETGAGKSLLVDALGLLSGLRADSGVVRHGADRAELVADFTLDDAPLAAAWLRENELDETGDGDAPVCQIRRVIRADGGSRAWVNGRPVTLGQLGDLATRLVEIHGQHEHQALMAKSSQLDLLDAYARNDGVREPVARAAREWSALLRERETLFAQGDVSDRIGWLEHQHAELERETLDPEALSKLTADHRRHAHAAGLIAACETAFARIGGDEGPSLTRTLQQVRGELQRVAEHESRLRDVDALLDNAAIQIDEALSLLDRVRDDLDLDPAAFEQIESKIGRLHELARKHRVAPEQLAATRDGIAEELEQLRGAGVRLEKLDVEIDTARKTWRKSADALSQSRRDAAKSLSAKTTELIGELGMGGGRFDVAIETVEDDRPDPQGGERIEFMVAANPGQPARPLRKVASGGELSRISLAIEVAAFGLDAVPTMVFDEVDSGIGGAVAEIVGQKLRALGGSRQVLCVTHLAQVAAQGHAHYRVSKAASEGVTQSAVQLLVSKQREEELARMLGGIELTKEVRAAAKRLLADVV
>NZ_CP011131.1|WP_057942786.1|2501107_2501509_+|ferric-iron-uptake-transcriptional-regulator
MESQDLRNAGLKVTHPRMRILELLEQSKPRHMTAEDIYRMLLEKGEDIGLATVYRVLTQFESAGLVLKHNFEAGQSVYELDRGHHHDHMVDIDSGKIIEFESVEIEELQRKIAASHGYVIEEHSLVLYVRKKR
>NZ_CP011131.1|WP_057942785.1|2500488_2500896_-|outer-membrane-protein-assembly-factor-BamE
MRKLLLVLSISLLTAGCGIIYKQPIYQGNLLEKTAVDQLQTGMSKQQVQVLIGTPSIEDPFHQNRWDYTSTQRVDRLGHTSRKNLTLWFENDALTKWEGDYFPEQDEQIAKASVKQFGRNLAKEKDKDKRRRRGG
>NZ_CP011131.1|WP_057942784.1|2500176_2500443_+|RnfH-family-protein
MKVEVVRAWSRRFESVGLELGEGATLAEAVAAAGFQDDAQITGYAVFGVKAAADTRLRDGDRVELLRALQIDPKDARRRRAADRPLKK
>NZ_CP011131.1|WP_057942783.1|2499715_2500180_+|type-II-toxin-antitoxin-system-RatA-family-toxin
MPTIRRSALVEHSAARMFALVNDVGAYPRRFDWCEHAQILEADDQHMVARLDLGLGALRTWFTTHNTLTPPHHIELKLVDGPFRKLGGRWEFHALDESACKVTLTLEFEPAVKLLGPAMALGFQSLADRMVDDFVRVADRGAEPGTPVAGGATA
>NZ_CP011131.1|WP_057942782.1|2498951_2499464_-|SsrA-binding-protein-SmpB
MANNTNNKAGKDKGKGGGGGTIAQNKRARHEYHLEERFEAGLVLEGWELKSIRAGRANITDAYAVVLHGELFLIGAQINPLIQASTHVVAVERRTRKLLLHKHEIDNLIGRIQRDGYTVVPTSLYWKGNKVKAEIHLAKGKQTHDKRDASKERDWAREKQRVMRRHNRDA
>NZ_CP011131.1|WP_057942792.1|2509662_2512386_-|hypothetical-protein
MSDDYSEQIRRIRKAATLEEVQAIAREFPAKAVGEGGILYSRPVGSVSSESIALELASKTGEPIINNTPRAQFLGDKQVEKAIRDTAERIFMGQGQDLAQAGKSAGDLLYGNPNAAARSATSLEGSLWGEASHEFAGSLRGDIKVIASNANIERVFGKVELPAVLDNPNVRTLGGQPTAELKTLYSKGGADAVLPKVQAQFIEAAPKGIFVAPENAGTTVTKVTLSREAVATLGADAAKFTPAAELTGAGLARAPTGLTAPAASVGEAALTGEAAGVARGLRPGTVMKGAAVVGAAALAYDFVTTGHQVMKLESQGNTTGAESARTHFIGRNVGGIGGGIAGGFLAGAGYGLVAGSETGPGALVTGAIGGIAGGIGGAVWGEKWAQQKDIDRVFTQKDRDGNEWSRDPKDEKAAWTRVAQTEQVKASTTVGADNGAATYSKVRYVAGDVLANELNYKSANASYELGLSNARTPQNPYSLPPGKGDTHSIDGGGNWTRDPQSHAWKREVVDDRLEHGIKISHTETANPQRAAELDQSAKLIIAENAANTPAAVAARYQVAYNQFGWKQNGDVPAAVKDAAAKTESLQASDGDTYTRGANGEWTTPGMIYGTNQASGNIRDELNATYQSQRAGLQEFSALAAEALAHPTLPQPMSMRGMVAGAYANAGVPRTEAQIDAATAAVAATHARGGLAQAGHPYSLTLQPDPKTGRPGPNSAIVTMMDDGRDGILSDSKMVPKGITTSDEIKQAEKAALSAPAPAAATKPEVKAPDPATSTGSISAPGLPSDQRAAVSPLQQLPSADQAMFAKIRTGAPPQISDDHVAQAMLLAKKDGITDAGKIAAVKMTGDTLWVVGDTPGFKASVNVNEPAPAVQATVRETLAFNQQQERQLAQEAAQRTQNAPTHAGPTV
>NZ_CP011131.1|WP_148648841.1|2512382_2512970_-|hypothetical-protein
MAVVVGVNDGTSSLPPRCRRRTGVASSIPWSGATHEPSVRRKPEFSMAYQGETGMEPFDPPFDWVQFPQGRARFSGGVRGADEQGHETFAIDVAGTEHFGEIARAFLPNNNDYNIEVVSFGYASDDVGIPMLDACRTFTGAQIAAIHALIVQLIDAGTRFADRPHLLMEYPNARFMGEVIFRDGWALLKDEEYAS
>NZ_CP011131.1|WP_057942794.1|2513180_2515109_+|DUF3857-and-transglutaminase-domain-containing-protein
MHTTTLRLFAVTALALASASALAQNAAPAKTASAAKAAAKPEAADEAPARVERQHISYTVQADGSYIEQRESALKVLQAPAIERAKHESISYSASIQTLEVTEAYTRKADGRRVDVPKSNFQVETNEGRAGGGPAFSDIATTSLVFPDVEVGDTVVVNYKLIGKQPMFDRQFSVLDNVSANSYQGDLKVRIDTPASLWSQNRTFGAMKQVRDETVGDRHIVEWTYQNLTPAKDTRRDYSVYKVEDFPGYAFSTFRNYGQIAAAYGERALPKAAPTPRVRKLADEIAAGKKDQREVAKALYEWVSTNIQYAGNCIGLGAVVPRDQEFVLDNRIGDCKDHATLLQALLAAKNVPATQALINAGNVYQLPDIPVASSVNHVLNYLPGLDLYVDATAKGIPFGDLPVAVAGKPVLRVDQPELKAATAPLSSKRNRQRMVTDLIVQEDGSVKGKVEVELEGQPAIETRAAFRKVREKDSQEMIKKYFEAGGLSAQGSFTQDDPQALLDKHRYSAQFEVKQMLPVPGAFPVAPLFFNPMPVATFASSAQYDDSVYESEGQCIGGRSEEIYRIEFPATMKVIAVPPDARQEWEGSSYEAKYTLKGNVLEARRVIVDASQGPVCTQAHNRGYQQFAKKVLPNLKAQLVYQ
>NZ_CP011131.1|WP_083512446.1|2515228_2515966_+|4-hydroxy-tetrahydrodipicolinate-reductase
MNEPTKTPIKLLVHGASGRMGQALLRLAAERADLNVAAAYSRSSPAQRVIDGVPHFATAELSGAPEFDVVIDFSLPQGFDPVLALCAQRGKALVSGTTGLSSAQNTAINDAASRIAVVWAANYSLGVAVLTELVRRAAAALPGWDCDVIEAHHTRKLDAPSGTALHLGAAAAIGRGEEPHYASLRAGDIVGEHTVQFASAGERLELIHRATNRDIFARGALEAALRVAHQAPGRYGLAELMFPNL
>NZ_CP011131.1|WP_057942796.1|2516655_2517783_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MTQPAILALEDGTVFEGVSVGAPGLSVGEVVFNTAITGYQEILTDPSYARQLVTLTYPHVGNTGITAQDDEAHQVWASGLIVRDVPRRPSNWRSQIALPQWLSDRGVVAISDIDTRKLTRLLRDTGAQNGALMAGEIDVEKALEAARKFPGLKGMDLAKEVCTRERYEWTEGQLDLDRNAFVSAESRFHVVAYDFGVKLNILRMLAERGCRVTVVPAQTSAADVFALKPDGVFLSNGPGDPEPCDYAIAAIKEFIASKIPTFGICLGHQLLGLASGAKTLKMKFGHHGANHPVQDLDSGRVMITSQNHGFAVDEATLPANVRVTHRSLFDGSNQGIALTDAPAFSFQGHPEASPGPHDVSPLFDRFVSMLEQAKA
>NZ_CP011131.1|WP_057942797.1|2517782_2518229_+|hypothetical-protein
MSAAPASPPRRRRWRLRVLAVLVALGAYPAFVMIAVYSQWFAADLPGGRNGPADAYRHSLASAIVAYTLSPRCVGWVTAVMERGGQGNASRAMDAHNNAIGAHLGASAENWTAMQREVRAAVDHGAIDARSPEQITWRAPEAWQDRLY
>NZ_CP011131.1|WP_057942798.1|2518236_2521482_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKTVLIIGAGPIVIGQACEFDYSGAQACKALRDEGYRVVLVNSNPATIMTDPDMADAVYIEPINWQTVEKIIAKEKPDALLPTMGGQTALNCALDLADNGVLEKYNVELIGAKRDAIRMAEDRELFRVAMAEIGLECPKAEVARTFEQAVDIQTRVGYPTIIRPSFTLGGSGGGIAYNKEEFEEIAKRGLELSPVHEILVEESVLGWKEFEMEVVRDTADNCIIVCSIENFDAMGVHTGDSITVAPAQTLTDKEYQRLRDASIAVLRKIGVDTGGSNVQFGINAQDGRVVVIEMNPRVSRSSALASKATGFPIAKIAAKLAIGYTLDELRNEITGGATPASFEPSIDYVVTKIPRFAFEKFPQADARLTTQMKSVGEVMAMGRTFQESLQKALRGLETGKVGLDPTGLDLGSELDMIKLRRELKEPGPERMFHIGDAFRAGMSVEDVHALSFVDPWFLDQIEELIATEGEVADAGLAALDKARMRALKRMGFSDARLAQLTGTDETAVRTLRRALGVRPVYKRVDSCAAEFATTTAYMYSTYEDECESNPSNRDKIIVLGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIADLEKPKGVIVQYGGQTPLKLARALEANGVPIIGTTPDSIDLAEDRERFQKLVQELGLAQPINRTARNPDEALALANQIGYPMVVRPSYVLGGRAMEIVYSDADLTRYIRDAVKVSNDSPVLLDRFLDNAVEVDVDVIADREGRVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPETQERLRTQVIALAKALKVVGLMNTQFAIQTDAEGKETIFLIEVNPRASRTVPFVSKATGMALAKIAARCMVGQTLASQGALEEIVPDYYSVKEAIFPFAKFQGVDPILGPEMRSTGEVMGVGKNFGAAMARAQEAGGIKAPPVGKAFISVRDPDKQRVLPVAQELVRRGFTLVATSGTQSFLSEHGVACEVINKVTEGRPHIVDLIKNGEIVYIINTTEGRQAISDSFSIRREALQQRVTYSTTVSGARALVGSLDYRGTGPVWSLQELHAQIGAA
>NZ_CP011131.1|WP_057942799.1|2521957_2522434_+|transcription-elongation-factor-GreA
MRAPITAKGALRLRAELEELKSVKRPAVINSIAEARAHGDLKENAEYHAAREQQGFIEGRIKQLEAELSHAEIIDISKLNAGSKVVFGATVELTDVDTDEERTYQIVGDLEADIKLGLIAISSPVARALIGKNEGDSVEIQAPGGVREYEIVSVSYNG
>NZ_CP011131.1|WP_057942800.1|2522464_2523412_+|hypothetical-protein
MNRISLLLPERARFGGQRLSEDIGRRIGRAERGVEAGDQAARVFDILPRGWPVAAVSRQRDVGDGAHGAWLRADPAYVRPDINGARLLAYGDALALSERDSAALLPALRPLFGDAGFPLDAPVPTRWYLSLPRETRLPRFASPEQALGEDMFQHLPGGEGEGSEGRRWRALLSEAQVVLHNHPHNAQRIAAGLAPINSLWFWGAGVLPDHVRTAYAQVLSDDEALTAFGAQAGIAVGALPNQWTASAGEGEALFDLRAARDLTPLQRDWLEPIARALDAGALERVALAFADGERFELARSQRWRFWRKPLRSLLD
>NZ_CP011131.1|WP_057942801.1|2523449_2525180_+|single-stranded-DNA-specific-exonuclease-RecJ
MSPAATKTAARLRRREPAGEGDWPDSMSPLLRRIYAARGATCLEQAQPRLAQLLPPDGMLGLDTATQLLFDAIAADRHILVVGDFDCDGATACAVGVRGLRMLGAKRVSHAVPNRIVHGYGLSPALVEELAGLQPDLLVTVDHGIACHAGIAAARERGWQVLVTDHHLPGDHLPMADAIVDPNQPGDAFPSKMLAGVGVMFYVLLALRRRMREAGLFKDAGPDLTVLLDLVAVGTVADLVPLDANNRALVAAGLRRLRAGQGSAGLRALIEVSQRDYRRLTAADIGYALAPRLNAAGRLEDMALGIECLITDDAVQARYIASTLNDINAERRAVQQQMTDEAELAFARVSIDAQAAPLALCLFDPDWHPGVVGLVASKMKERLHRPVIAFAPAEPGSDQLRGSARSIPGFHIRDALADVAARHPDLIERFGGHAMAAGLSLRQDAFETFRGAFEQCARAALTPELLQADVLSDGELAIAEFDRAHAESLRDAGPWGQGFAEPQFDGEFEVLSWRVVGERHLKLELGRDGLRLNAIEFGGWDGNRPPPWVRIAYRLEPDDYRGGNAVQLVVVHREAL

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Crispr_ID: NZ_CP011131_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_10

2521610-2521690

Orphan

Consensus_repeat	Method
ATCCAGAGCCTTCAGAGCCATCCTTCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011131_10

>merge|NZ_CP011131|10|2521610-2521690|CRISPRCasFinder
ATCCAGAGCCTTCAGAGCCATCCTTCCAATCCGTCATTCCCGCGAAAGCGGGAATCCAGAGCCTTCAGCGCCATCCTTCCA

>NZ_CP011131|10|8|2521610-2521690|CRISPRCasFinder
ATCCAGAGCCTTCAGAGCCATCCTTCCA	ATCCGTCATTCCCGCGAAAGCGGGA
ATCCAGAGCCTTCAGCGCCATCCTTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_057942796.1\|2516655_2517783_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP011131.1\|WP_057942789.1\|2505332_2505848_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237625
NZ_CP011131.1\|WP_057942803.1\|2527359_2529651_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379647
NZ_CP011131.1\|WP_083512448.1\|2534498_2537408_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP011131.1\|WP_083512447.1\|2532131_2533922_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|378128
NZ_CP011131.1\|WP_057942799.1\|2521957_2522434_+\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
NZ_CP011131.1\|WP_057942800.1\|2522464_2523412_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226706
NZ_CP011131.1\|WP_057945399.1\|2529875_2530913_+\|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	unknown	unknown	gnl\|CDD\|271335
NZ_CP011131.1\|WP_057942794.1\|2513180_2515109_+\|DUF3857-and-transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379003
NZ_CP011131.1\|WP_083512446.1\|2515228_2515966_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_CP011131.1\|WP_057942798.1\|2518236_2521482_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP011131.1\|WP_083512882.1\|2525502_2527299_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223403
NZ_CP011131.1\|WP_057942791.1\|2508125_2509259_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NZ_CP011131.1\|WP_057942790.1\|2506045_2507962_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP011131.1\|WP_057942804.1\|2530921_2531650_+\|copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684
NZ_CP011131.1\|WP_057942792.1\|2509662_2512386_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_148648841.1\|2512382_2512970_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_187313168.1\|2531820_2531982_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942797.1\|2517782_2518229_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942801.1\|2523449_2525180_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_057942796.1\|2516655_2517783_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP011131.1\|WP_057942789.1\|2505332_2505848_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237625	PRK14147, PRK14147, heat shock protein GrpE; Provisional.	7.53793e-73
NZ_CP011131.1\|WP_057942803.1\|2527359_2529651_+\|hypothetical-protein	gnl\|CDD\|379647	pfam14561, TPR_20, Tetratricopeptide repeat.	0.00548319
NZ_CP011131.1\|WP_083512447.1\|2532131_2533922_+\|FAD-binding-protein	gnl\|CDD\|378128	pfam09129, Chol_subst-bind, Cholesterol oxidase, substrate-binding. The substrate-binding domain found in Cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices. This domain is positioned over the isoalloxazine ring system of the FAD cofactor bound by FAD_binding_4 (PF:PF01565) and forms the roof of the active site cavity, allowing for catalysis of oxidation and isomerisation of cholesterol to cholest-4-en-3-one.	3.48983e-176
NZ_CP011131.1\|WP_057942799.1\|2521957_2522434_+\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	2.06368e-82
NZ_CP011131.1\|WP_057942800.1\|2522464_2523412_+\|hypothetical-protein	gnl\|CDD\|226706	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown].	3.30994e-46
NZ_CP011131.1\|WP_057945399.1\|2529875_2530913_+\|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	gnl\|CDD\|271335	cd04513, Glycosylasparaginase, Glycosylasparaginase and similar proteins. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.	3.55553e-134
NZ_CP011131.1\|WP_057942794.1\|2513180_2515109_+\|DUF3857-and-transglutaminase-domain-containing-protein	gnl\|CDD\|379003	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857). This family is based on the first domain of the PDB structure Structure 3KD4(residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase (3ebi, Z=10, rmsd 3.6A for 152 CA, seq id 12%), despite lack of any significant sequence similarity.	1.18829e-20
NZ_CP011131.1\|WP_083512446.1\|2515228_2515966_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	1.0964e-93
NZ_CP011131.1\|WP_057942798.1\|2518236_2521482_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP011131.1\|WP_083512882.1\|2525502_2527299_+\|ATP-binding-protein	gnl\|CDD\|223403	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones].	6.32997e-113
NZ_CP011131.1\|WP_057942791.1\|2508125_2509259_+\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NZ_CP011131.1\|WP_057942790.1\|2506045_2507962_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP011131.1\|WP_057942804.1\|2530921_2531650_+\|copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	6.61138e-92
NZ_CP011131.1\|WP_083512448.1\|2534498_2537408_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.08684e-18
NZ_CP011131.1\|WP_057942801.1\|2523449_2525180_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0

>NZ_CP011131.1|WP_057942798.1|2518236_2521482_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKTVLIIGAGPIVIGQACEFDYSGAQACKALRDEGYRVVLVNSNPATIMTDPDMADAVYIEPINWQTVEKIIAKEKPDALLPTMGGQTALNCALDLADNGVLEKYNVELIGAKRDAIRMAEDRELFRVAMAEIGLECPKAEVARTFEQAVDIQTRVGYPTIIRPSFTLGGSGGGIAYNKEEFEEIAKRGLELSPVHEILVEESVLGWKEFEMEVVRDTADNCIIVCSIENFDAMGVHTGDSITVAPAQTLTDKEYQRLRDASIAVLRKIGVDTGGSNVQFGINAQDGRVVVIEMNPRVSRSSALASKATGFPIAKIAAKLAIGYTLDELRNEITGGATPASFEPSIDYVVTKIPRFAFEKFPQADARLTTQMKSVGEVMAMGRTFQESLQKALRGLETGKVGLDPTGLDLGSELDMIKLRRELKEPGPERMFHIGDAFRAGMSVEDVHALSFVDPWFLDQIEELIATEGEVADAGLAALDKARMRALKRMGFSDARLAQLTGTDETAVRTLRRALGVRPVYKRVDSCAAEFATTTAYMYSTYEDECESNPSNRDKIIVLGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIADLEKPKGVIVQYGGQTPLKLARALEANGVPIIGTTPDSIDLAEDRERFQKLVQELGLAQPINRTARNPDEALALANQIGYPMVVRPSYVLGGRAMEIVYSDADLTRYIRDAVKVSNDSPVLLDRFLDNAVEVDVDVIADREGRVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPETQERLRTQVIALAKALKVVGLMNTQFAIQTDAEGKETIFLIEVNPRASRTVPFVSKATGMALAKIAARCMVGQTLASQGALEEIVPDYYSVKEAIFPFAKFQGVDPILGPEMRSTGEVMGVGKNFGAAMARAQEAGGIKAPPVGKAFISVRDPDKQRVLPVAQELVRRGFTLVATSGTQSFLSEHGVACEVINKVTEGRPHIVDLIKNGEIVYIINTTEGRQAISDSFSIRREALQQRVTYSTTVSGARALVGSLDYRGTGPVWSLQELHAQIGAA
>NZ_CP011131.1|WP_057942797.1|2517782_2518229_+|hypothetical-protein
MSAAPASPPRRRRWRLRVLAVLVALGAYPAFVMIAVYSQWFAADLPGGRNGPADAYRHSLASAIVAYTLSPRCVGWVTAVMERGGQGNASRAMDAHNNAIGAHLGASAENWTAMQREVRAAVDHGAIDARSPEQITWRAPEAWQDRLY
>NZ_CP011131.1|WP_057942796.1|2516655_2517783_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MTQPAILALEDGTVFEGVSVGAPGLSVGEVVFNTAITGYQEILTDPSYARQLVTLTYPHVGNTGITAQDDEAHQVWASGLIVRDVPRRPSNWRSQIALPQWLSDRGVVAISDIDTRKLTRLLRDTGAQNGALMAGEIDVEKALEAARKFPGLKGMDLAKEVCTRERYEWTEGQLDLDRNAFVSAESRFHVVAYDFGVKLNILRMLAERGCRVTVVPAQTSAADVFALKPDGVFLSNGPGDPEPCDYAIAAIKEFIASKIPTFGICLGHQLLGLASGAKTLKMKFGHHGANHPVQDLDSGRVMITSQNHGFAVDEATLPANVRVTHRSLFDGSNQGIALTDAPAFSFQGHPEASPGPHDVSPLFDRFVSMLEQAKA
>NZ_CP011131.1|WP_083512446.1|2515228_2515966_+|4-hydroxy-tetrahydrodipicolinate-reductase
MNEPTKTPIKLLVHGASGRMGQALLRLAAERADLNVAAAYSRSSPAQRVIDGVPHFATAELSGAPEFDVVIDFSLPQGFDPVLALCAQRGKALVSGTTGLSSAQNTAINDAASRIAVVWAANYSLGVAVLTELVRRAAAALPGWDCDVIEAHHTRKLDAPSGTALHLGAAAAIGRGEEPHYASLRAGDIVGEHTVQFASAGERLELIHRATNRDIFARGALEAALRVAHQAPGRYGLAELMFPNL
>NZ_CP011131.1|WP_057942794.1|2513180_2515109_+|DUF3857-and-transglutaminase-domain-containing-protein
MHTTTLRLFAVTALALASASALAQNAAPAKTASAAKAAAKPEAADEAPARVERQHISYTVQADGSYIEQRESALKVLQAPAIERAKHESISYSASIQTLEVTEAYTRKADGRRVDVPKSNFQVETNEGRAGGGPAFSDIATTSLVFPDVEVGDTVVVNYKLIGKQPMFDRQFSVLDNVSANSYQGDLKVRIDTPASLWSQNRTFGAMKQVRDETVGDRHIVEWTYQNLTPAKDTRRDYSVYKVEDFPGYAFSTFRNYGQIAAAYGERALPKAAPTPRVRKLADEIAAGKKDQREVAKALYEWVSTNIQYAGNCIGLGAVVPRDQEFVLDNRIGDCKDHATLLQALLAAKNVPATQALINAGNVYQLPDIPVASSVNHVLNYLPGLDLYVDATAKGIPFGDLPVAVAGKPVLRVDQPELKAATAPLSSKRNRQRMVTDLIVQEDGSVKGKVEVELEGQPAIETRAAFRKVREKDSQEMIKKYFEAGGLSAQGSFTQDDPQALLDKHRYSAQFEVKQMLPVPGAFPVAPLFFNPMPVATFASSAQYDDSVYESEGQCIGGRSEEIYRIEFPATMKVIAVPPDARQEWEGSSYEAKYTLKGNVLEARRVIVDASQGPVCTQAHNRGYQQFAKKVLPNLKAQLVYQ
>NZ_CP011131.1|WP_148648841.1|2512382_2512970_-|hypothetical-protein
MAVVVGVNDGTSSLPPRCRRRTGVASSIPWSGATHEPSVRRKPEFSMAYQGETGMEPFDPPFDWVQFPQGRARFSGGVRGADEQGHETFAIDVAGTEHFGEIARAFLPNNNDYNIEVVSFGYASDDVGIPMLDACRTFTGAQIAAIHALIVQLIDAGTRFADRPHLLMEYPNARFMGEVIFRDGWALLKDEEYAS
>NZ_CP011131.1|WP_057942792.1|2509662_2512386_-|hypothetical-protein
MSDDYSEQIRRIRKAATLEEVQAIAREFPAKAVGEGGILYSRPVGSVSSESIALELASKTGEPIINNTPRAQFLGDKQVEKAIRDTAERIFMGQGQDLAQAGKSAGDLLYGNPNAAARSATSLEGSLWGEASHEFAGSLRGDIKVIASNANIERVFGKVELPAVLDNPNVRTLGGQPTAELKTLYSKGGADAVLPKVQAQFIEAAPKGIFVAPENAGTTVTKVTLSREAVATLGADAAKFTPAAELTGAGLARAPTGLTAPAASVGEAALTGEAAGVARGLRPGTVMKGAAVVGAAALAYDFVTTGHQVMKLESQGNTTGAESARTHFIGRNVGGIGGGIAGGFLAGAGYGLVAGSETGPGALVTGAIGGIAGGIGGAVWGEKWAQQKDIDRVFTQKDRDGNEWSRDPKDEKAAWTRVAQTEQVKASTTVGADNGAATYSKVRYVAGDVLANELNYKSANASYELGLSNARTPQNPYSLPPGKGDTHSIDGGGNWTRDPQSHAWKREVVDDRLEHGIKISHTETANPQRAAELDQSAKLIIAENAANTPAAVAARYQVAYNQFGWKQNGDVPAAVKDAAAKTESLQASDGDTYTRGANGEWTTPGMIYGTNQASGNIRDELNATYQSQRAGLQEFSALAAEALAHPTLPQPMSMRGMVAGAYANAGVPRTEAQIDAATAAVAATHARGGLAQAGHPYSLTLQPDPKTGRPGPNSAIVTMMDDGRDGILSDSKMVPKGITTSDEIKQAEKAALSAPAPAAATKPEVKAPDPATSTGSISAPGLPSDQRAAVSPLQQLPSADQAMFAKIRTGAPPQISDDHVAQAMLLAKKDGITDAGKIAAVKMTGDTLWVVGDTPGFKASVNVNEPAPAVQATVRETLAFNQQQERQLAQEAAQRTQNAPTHAGPTV
>NZ_CP011131.1|WP_057942791.1|2508125_2509259_+|molecular-chaperone-DnaJ
MSKRDYYEVLGVARNASDDDLKKAYRRCAMKHHPDRNPGDSAAEAAFKECKEAYEVLADANKRRAYDQHGHAAFEHGMGGNGGGGPGFADMGDIFGDIFGNIFGGGGGGARGPRRGADIGYVMELSLEEAVGGVEKQIEIPTLDACESCKGSGSSDGKVETCTTCNGRGQVRFQRGIFSMQQACPHCNGRGQTIANPCGDCHGQGRIERTKTLSVKIPAGVDNGDRIRLTGEGEAGPAGSPPGDLYVEVRVREHDIFQRDGDDLHCDVPIRISQAALGDIIRVPTLGGEVELRIPFETQSGKLFRLRDKGVKSVRSRKTGDLYCRVVVETPVNLTVEQRELLEKFEATFVGEGARKHSPRSSTFLDGVKGFWDRMTS
>NZ_CP011131.1|WP_057942790.1|2506045_2507962_+|molecular-chaperone-DnaK
MGKIIGIDLGTTNSCVAIMEGGKAKVIENSEGDRTTPSIVAFTKDGEVLVGASAKRQAVTNPKNTFYAVKRLIGRKMTDAEVQKDLGLVPYAIVPHDNGDAWVSTLDGKKMAPQQISAEVLGKMKKTAEAYLGEPVTEAVITVPAYFNDSQRQATKDAGKIAGLDVKRIINEPTAAALAYGMDKKGGDRKVAVYDLGGGTFDVSIIEIASVDGEMQVEVLSTNGDTFLGGEDFDKRVIDYLVEEFQKDQGIDLRKDPLALQRLKDAAERAKIELSSSQQTEVNLPYVTADASGPKHLNIKLTRAKLESLVEDLVKKTIEPCRIALNDAGLRASDVAEVILVGGQTRMPKVSQAVAEFFGKEPRKDVNPDEAVAVGAAIQGGVLAGEVKDVLLLDVTPLSLGIETLGGVFTKIIEKNTTVPTKASQTFSTAEDNQSAVTVHVLQGEREQARFNKSLARFDLSGIEPSPRGMPQVEVSFDIDANGILHVSAKDKKTNKEQKVEIKAGSGLSEEEIAKMVADAEANREEDQKFHELVQARNHADGLIHMTRSTIKEHGEKLPGDQIGRAEAAISELETAMKGDDKGQIEAKSKALEEAAQTLLAAVNAGQPGEEAPAGNGASAKADDVVDAEFTEVKDDKK
>NZ_CP011131.1|WP_057942789.1|2505332_2505848_+|nucleotide-exchange-factor-GrpE
MNQNDPNPDLNLDAQDPAPVAELSEVETLRAELNKLREDSLRERAELDNQRKRVARDIEMARKFANERLLGALLPVIDSLEAGLAIAGNEAGALREGMELTLRQLLKVADDNGLVAVDPAGQPFNPEHHQAMSMVPAPGVAPNHVVQVYQKGWLLNDRLLRPALVVVAQDG
>NZ_CP011131.1|WP_057942799.1|2521957_2522434_+|transcription-elongation-factor-GreA
MRAPITAKGALRLRAELEELKSVKRPAVINSIAEARAHGDLKENAEYHAAREQQGFIEGRIKQLEAELSHAEIIDISKLNAGSKVVFGATVELTDVDTDEERTYQIVGDLEADIKLGLIAISSPVARALIGKNEGDSVEIQAPGGVREYEIVSVSYNG
>NZ_CP011131.1|WP_057942800.1|2522464_2523412_+|hypothetical-protein
MNRISLLLPERARFGGQRLSEDIGRRIGRAERGVEAGDQAARVFDILPRGWPVAAVSRQRDVGDGAHGAWLRADPAYVRPDINGARLLAYGDALALSERDSAALLPALRPLFGDAGFPLDAPVPTRWYLSLPRETRLPRFASPEQALGEDMFQHLPGGEGEGSEGRRWRALLSEAQVVLHNHPHNAQRIAAGLAPINSLWFWGAGVLPDHVRTAYAQVLSDDEALTAFGAQAGIAVGALPNQWTASAGEGEALFDLRAARDLTPLQRDWLEPIARALDAGALERVALAFADGERFELARSQRWRFWRKPLRSLLD
>NZ_CP011131.1|WP_057942801.1|2523449_2525180_+|single-stranded-DNA-specific-exonuclease-RecJ
MSPAATKTAARLRRREPAGEGDWPDSMSPLLRRIYAARGATCLEQAQPRLAQLLPPDGMLGLDTATQLLFDAIAADRHILVVGDFDCDGATACAVGVRGLRMLGAKRVSHAVPNRIVHGYGLSPALVEELAGLQPDLLVTVDHGIACHAGIAAARERGWQVLVTDHHLPGDHLPMADAIVDPNQPGDAFPSKMLAGVGVMFYVLLALRRRMREAGLFKDAGPDLTVLLDLVAVGTVADLVPLDANNRALVAAGLRRLRAGQGSAGLRALIEVSQRDYRRLTAADIGYALAPRLNAAGRLEDMALGIECLITDDAVQARYIASTLNDINAERRAVQQQMTDEAELAFARVSIDAQAAPLALCLFDPDWHPGVVGLVASKMKERLHRPVIAFAPAEPGSDQLRGSARSIPGFHIRDALADVAARHPDLIERFGGHAMAAGLSLRQDAFETFRGAFEQCARAALTPELLQADVLSDGELAIAEFDRAHAESLRDAGPWGQGFAEPQFDGEFEVLSWRVVGERHLKLELGRDGLRLNAIEFGGWDGNRPPPWVRIAYRLEPDDYRGGNAVQLVVVHREAL
>NZ_CP011131.1|WP_083512882.1|2525502_2527299_+|ATP-binding-protein
MTVLGQHLYSTPLVALRELVQNANDSIVRRRLEDPAAPTAPRITVVGDISARTVRVIDTGTGLTESEIHTYLATVGVGYTRGLRQGQAASEELIGMFGLGFLSAFVIAERVTVTTTSFQQPDRGWRYQSSNGEQYSLAAAPAREIGTVVELALREEHARLAGEDYLARVLGRYCALLRVPIYIGDAAEPLNPEPPPWRGDSDSVSEHPVQARKRQLRFASRFEQQFEPICAMPVPALAGESDPRGLLWVQDGGTYGNSDNRNLSVFVRGMLLDDDARDLLPGWAGFVGGVIESSRLMPTASREDLQRNEAYRSAQHAIAESLIGGLAAVAREQPEAWRRILNRHNEALLGAALCDARLFELLAEEVRVPSSHGDLRASALRREGAIHVGLSTGGFEDMLFRMLGVPVARGDRYAVLPFLRQWVQRHGGRLIEIGTEQGNRQLFTELGLPDAELDWLRETLADGEKVVPARFAPAELPLMVVPDREAELKRRLESDEADKRISMTALRLVRGFTAGIDGSAQARLYVNLDNPAMRALLATMRADRAAAEPAARLLKAIKQLMETHNDADGHGHRLNGALAAIGDSVLRLLPAAAGQAGD
>NZ_CP011131.1|WP_057942803.1|2527359_2529651_+|hypothetical-protein
MDIFDWIEDLSEELREAGQYRVVELINRIPHELHDNHPERVEAMLPEALAAARALQNPWLEVFFRHWGLQNRMRNLAEGEKALPEAVSLLEFAHRDETQQCPQSVCVTQDIAICYGNVDGPGWVPERLALSEETLARIEPSRNCYDCISREYALALMDGGRADEAVTYLQAQARNMLRDGGEPGVAYRETQAGALFRAGRCEQALAALDAIEEEELDDDDDGDRLSRATFRALILARLGRMDEAWDALPPYGPTVVPLLYPNWSEAVALIAAAKPEHNHWRLGRLLATMVSHMDRVGAHRRCIELALRHGELALLRKAGWTARRALAIARRHLPLLRSDLGAGELIAAFAARVDALDAAAVPSMPAEAVYEHVRDDEGSDPEQDIELLLAAYRERPDDGPLAGLLGSAMIACGSREDAIAHLWEFVRRHPQSEDAPASQLLEQLLDHGEAEAEIGRLAALVEPERPAFAHWCRAQLAFARERWSEVGEHVERLLTHVPDANGARRLWARAAMANQDFDRAVGLYAALAEQSEEPGGDDWDLMSAASAAGDWPAVRRSAARLGMQLSSEDGPVRESWGWLRLRYEHDGESYDCLGSRTGPVTAEVVTVAAPGRPQHVRDEVVFDAAPLEQAPEDEAEREHWLTPFRVVHTRRRADYRSWFVDGAHPGESAFEAMREALEAQQWSVWVRSGDDYRVRDPKQDEDAALPGLYFFLATPPQVAPSQVDSRLLELTAGWEHPLSWLQLAEQAGADTGRHEAIVEAYGL
>NZ_CP011131.1|WP_057945399.1|2529875_2530913_+|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase
MTSRRRFLQSSLLAAGAAALPALGAEKNTAVSTARPAAASGARVVSTWDFGVGANQAAWPVLADGGSALDAVEAGARWAEADLCNNTVGRCGNPDRDGVLTLDASIMDGDGRCGAVAALEDIAHPVTVARRVMERTPHVLLVGAGAQQFAIEQGFPKQPLLTDKARAAWNEWRKTSKYQPQINAERLDQAKPGDKTNHDTLGILAIDRSGKLAGACTTSGMAWKLHGRVGDSPIVGAGLYVDNEVGAATASGVGEEMLRNAASFLVVELMRQGRGPDEACREAIDRLVRKRPQASKTLQVCFLAINKHGEVGAHALHRGFVYAVCDANKRDALLDSPSVYTTQQT
>NZ_CP011131.1|WP_057942804.1|2530921_2531650_+|copper-homeostasis-protein-CutC
MTRKLLEISANSLASALAAQAGGADRVELCENLREGGTTPSYGTLAVARDRLRIPLYVLIRPRGGDFLYDENDLAVMRADVETCVRLGCDGVVIGALDADGAVDAGVCAELIAAAGSLGVTFHRAFDAARDRAAALEAVIALGCERILTSGGAVDAEQGADHIAALVAQAAGRIALMAGAGVTAHNIAALAQRAQVGELHASAKAPRVSAMRYRNDGLAGLSPDWVQSDADIVRALAQALRA
>NZ_CP011131.1|WP_187313168.1|2531820_2531982_+|hypothetical-protein
MSVAIRCAMNAAYSMRINHDRVERFALPLCDQTWITRIIGMRLRNGEFAVAAN
>NZ_CP011131.1|WP_083512447.1|2532131_2533922_+|FAD-binding-protein
MSNDSPHDAINDDHSAPDADRHRRRFLGQALAIGAAGTGAAWWPAFAVDAASALATCAAPPAFPAQIPLFQQAYRNWSGEIQIDALWTCSPRNPEEVVTVVNWARQHGYRVRPRGMGHNWSPLNLAPDQTCAERIVMIDTLTHLNRVEIDRGAQPARVTAQAGISMQDLLARLEEAGLGLAHMPAPGDLSLGGVLAVDAHGTAVPALGETRQSGHSYGSLSNLVLSLTAVVWDAARQAYMLRSFRRDEADCAAFLAHLGRALIVEATLQAGPNQRLRCQSNVGIAASELFAAPGSTGRTFASFLDKSGRVETIHFPFTRNPWLKVWTLTPDLPPMVREAATPFNYPFSDSIPPELTDLICDINLGDVSRTPALGALQYSLVSAGLMFTASFDLWGWSRNLMLYVKPSTLRVTANGYAVITSRANVQRVVHEFVSFYQARAEAYRAQGKFPVNGPVEIRVTGLDRADEVAVRGAVEPLLSAVRPVRDRPEWDCAVWLDLLTLPGTPQAEPFYREVEQWVFSQFSGEYALARVEWSKGWGYDAVHGAWSDAAVIGQSIPNSLRYGQAADSAWDAAVAILNRYDPARVFSSPLLDRLLP
>NZ_CP011131.1|WP_083512448.1|2534498_2537408_+|TonB-dependent-receptor
MRHSTLQRSALTCALLSALFAPWGAQAAADQPDQADQAPAGAEAGQAAAARKPTEIDKVTVTGSRIKRAEIEGPAPVFTITAAQIEKEGFNTVYDALTTLTEAMGTVESDIAWGQHTVNASPLNLRNMGPGRSLLLINGRRVVDYPLPYQGKSNFANYNNIPTAIVERIEVLASGASAIYGSDAVAGVINVILKKDFQGDQVKVRGGTSTRGGRDAIDLSWAGGRSGDNWSVTYALQYFKREALPAGEREFMDSDFDAPPQSLNPQDRKVGILPSVGIRMFNADTGVRMAPPPGACDQFNGEFFLQNRRTYNRNTNTISNTGWQCGQSAVFQHWTLRNGSEDRSGYVYANYDFENGMQGWATLGVWSSRGTNMTFMPAWSSNGSYFDSGVGANLDLVRYFTPQEIGGAENGYTHSDELSWDLSAGLRGKFGERFDWDFSIGRAEYRVDEKFPAILTAEADRYFLGANRDRVDQGRLWNPISPQDYASITTRGKNRAESWLSSANFIVSGDLFEGWAGPIGFAGQLEAAKQGYSLAPDPKSLGDNRLYDQTANIDLGSGTRNHYAAGVEFKIPLLKSLTASVAGRYDKYDAVSGDAASTYNAGLEWRPFSNLLVRGTYATSFRAPDMHFVYATPSTSVADQTDYLSCLRAGQQGNCTWDAGFKVEDADISRQGTPDLKYETGSSWTAGFVWDIADGLSVSTDYWRIELEDEIDDVGANDVLLDEAYCLTGKTPTGETRLSPPSADRCKLQLGRVTRGADPDGAGPLLGPVTEIRTGPINRAARNVEGIDASLKYRLNTQRWGDFSFGLNYTNLLKLETRTDDSEQMQEKRTGEPRSKFRGSVNWQRNKWNATVYADRVGSVPSVRFGGCREFADGYVPSSDNCVDNDSASPTYGQKTEKYWGRVGPAITWNVSAGYQITDNAKINVYVSNLFDEVNEDKDPYKKDFAFIADRIFSPVGREIALEYVFDFK

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Crispr_ID: NZ_CP011131_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_11

2550427-2550542

Orphan

Consensus_repeat	Method
CTGGATCCCCGCCTTCGCGGGGATGACGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011131_11

>merge|NZ_CP011131|11|2550427-2550542|CRISPRCasFinder
CTGGATCCCCGCCTTCGCGGGGATGACGAGCAAAAACCGCGGCACGACGGTAGGTCAGGGCAAAGTGGCTTGTAGCATCACGGCACTGGATCCCCGCGTTCGCGGGGATGACGAGC

>NZ_CP011131|11|9|2550427-2550542|CRISPRCasFinder
CTGGATCCCCGCCTTCGCGGGGATGACGAGC	AAAAACCGCGGCACGACGGTAGGTCAGGGCAAAGTGGCTTGTAGCATCACGGCA
CTGGATCCCCGCGTTCGCGGGGATGACGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_083512448.1\|2534498_2537408_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP011131.1\|WP_057945399.1\|2529875_2530913_+\|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	unknown	unknown	gnl\|CDD\|271335
NZ_CP011131.1\|WP_057942807.1\|2542755_2545659_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP011131.1\|WP_148648842.1\|2549100_2550229_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP011131.1\|WP_057942813.1\|2556829_2558509_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|181546
NZ_CP011131.1\|WP_057942805.1\|2537528_2539976_+\|glycoside-hydrolase-family-92-protein	unknown	unknown	gnl\|CDD\|377950
NZ_CP011131.1\|WP_057942814.1\|2558738_2559299_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP011131.1\|WP_057942809.1\|2550651_2552169_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP011131.1\|WP_057942811.1\|2553538_2555728_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP011131.1\|WP_057942812.1\|2555779_2556649_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|236338
NZ_CP011131.1\|WP_057942815.1\|2559498_2562264_-\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
NZ_CP011131.1\|WP_057942816.1\|2562439_2563345_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP011131.1\|WP_057942818.1\|2564636_2565680_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270367
NZ_CP011131.1\|WP_057942804.1\|2530921_2531650_+\|copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684
NZ_CP011131.1\|WP_083512449.1\|2540174_2542589_+\|family-20-glycosylhydrolase	unknown	unknown	gnl\|CDD\|119333
NZ_CP011131.1\|WP_083512447.1\|2532131_2533922_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|378128
NZ_CP011131.1\|WP_148649191.1\|2546140_2548750_+\|glycoside-hydrolase-family-2-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP011131.1\|WP_057942817.1\|2563452_2564562_+\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
NZ_CP011131.1\|WP_187313168.1\|2531820_2531982_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057942810.1\|2552475_2553534_+\|two-component-system-response-regulator	unknown	unknown	gnl\|CDD\|225971

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_083512448.1\|2534498_2537408_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.08684e-18
NZ_CP011131.1\|WP_057945399.1\|2529875_2530913_+\|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	gnl\|CDD\|271335	cd04513, Glycosylasparaginase, Glycosylasparaginase and similar proteins. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.	3.55553e-134
NZ_CP011131.1\|WP_057942807.1\|2542755_2545659_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	8.79958e-24
NZ_CP011131.1\|WP_148648842.1\|2549100_2550229_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP011131.1\|WP_057942813.1\|2556829_2558509_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|181546	PRK08751, PRK08751, long-chain fatty acid--CoA ligase.	0
NZ_CP011131.1\|WP_057942805.1\|2537528_2539976_+\|glycoside-hydrolase-family-92-protein	gnl\|CDD\|377950	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation.	0
NZ_CP011131.1\|WP_057942814.1\|2558738_2559299_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	0.0001977
NZ_CP011131.1\|WP_057942809.1\|2550651_2552169_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP011131.1\|WP_057942811.1\|2553538_2555728_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.58971e-92
NZ_CP011131.1\|WP_057942812.1\|2555779_2556649_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|236338	PRK08788, PRK08788, enoyl-CoA hydratase; Validated.	8.83821e-144
NZ_CP011131.1\|WP_057942815.1\|2559498_2562264_-\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NZ_CP011131.1\|WP_057942816.1\|2562439_2563345_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.4654e-87
NZ_CP011131.1\|WP_057942818.1\|2564636_2565680_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270367	cd13649, PBP2_Cae31940, Substrate binding domain of an uncharacterized protein similar to ABC-type transporter for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the periplamic-binding protein Cae31940 which is phylogenetically similar to the ThiY/THI5 family. ThiY is the periplasmic N-formyl-4-amino-5-(aminomethyl)-2-methylpyrimidine (FAMP) binding component of the ABC transport system (ThiXYZ). FAMP is imported into cell by the transporter, where it is then incorporated into the thiamin biosynthetic pathway. The closest structural homologs of ThiY are THI5, which is responsible for the synthesis of 4-amino-5-(hydroxymethyl)-2-methylpyrimidine phosphate (HMP-P) in the thiamin biosynthetic pathway of eukaryotes, and periplasmic binding proteins involved in alkanesulfonate/nitrate and bicarbonate transport. After binding the ligand, They interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ThiY/THI5 proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.3025e-60
NZ_CP011131.1\|WP_057942804.1\|2530921_2531650_+\|copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	6.61138e-92
NZ_CP011131.1\|WP_083512449.1\|2540174_2542589_+\|family-20-glycosylhydrolase	gnl\|CDD\|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
NZ_CP011131.1\|WP_083512447.1\|2532131_2533922_+\|FAD-binding-protein	gnl\|CDD\|378128	pfam09129, Chol_subst-bind, Cholesterol oxidase, substrate-binding. The substrate-binding domain found in Cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices. This domain is positioned over the isoalloxazine ring system of the FAD cofactor bound by FAD_binding_4 (PF:PF01565) and forms the roof of the active site cavity, allowing for catalysis of oxidation and isomerisation of cholesterol to cholest-4-en-3-one.	3.48983e-176
NZ_CP011131.1\|WP_148649191.1\|2546140_2548750_+\|glycoside-hydrolase-family-2-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	1.56681e-122
NZ_CP011131.1\|WP_057942817.1\|2563452_2564562_+\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
NZ_CP011131.1\|WP_057942810.1\|2552475_2553534_+\|two-component-system-response-regulator	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	3.35641e-132

>NZ_CP011131.1|WP_148648842.1|2549100_2550229_+|peptide-chain-release-factor-2
MIELNPVRQRIADLKGRLDSLRGYLDYDAKVERLEEVNRELESPDIWNNAERAQGLGRERAALEKVVNGIRTLTEGLLGGLELLELAEMEDDESTALAVVEDVERYAKEVEKLEFRRMFSGQMDSASAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWKAELMEVSGGDVAGIKSATFRVEGDFAYGWLKTETGVHRLVRKSPFDSDNRRHTSFTSVFVSPEVDDKIEIDINPADLKTDVYRSSGAGGQHVNKTESAVRITHVPSGIVVACQTERSQHANRDRAMKMLAAKLYELEIQKRNAERDAVEATKSDIGWGSQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKSGLEVGSKRTDAV
>NZ_CP011131.1|WP_148649191.1|2546140_2548750_+|glycoside-hydrolase-family-2-protein
MLIAALAAHAAQAAPLSSRPLHENWQFRLTPDDPQAAEHKGATGWHAATIPGHVHTDLLAAKLIPDPYVGAREAQLQWIGLAQWEYRSQFDVDQASLARAHNELVFDGLDTFATIYLNGKQVLKADNSFRTWRVPVDGQLRERGNELRVVFDSPIRRLLPQVQAMPNKIAGNYPSPYGDEPRDAMTANFVRKPGYHYGWDWGPRYVTAGIWRGVRLDSWDRLRIGDLHVRPEHVSRQAAQTSVEVEIHSDRADAATIEIEYTDAKARSKTLSQSARLRAGVNRVAIAVNIADPQLWYPVGYGEQPLYTFKAVVRDRDGVQASAQRRTGLRSVELRRERDAKGQGFAFVINGIPVFAKGANAIPFDAFPARVTRERLRRDLQSARDANMNMIRNWGGGYYESDDFFELTDELGLLVWQDFMFGGGMPPGYDAAFRANVVAEARDNVRRLRNHPSIVLWCGNNEEETAWKDWGHSKKLMEADPKFAQTVWEGYVALFGKDLRAVVAEDGAGVPYWSSSPSNDLAEKANDSDNGDKHYWDVWGGPALPASAYLEETPRFMSEYGLQGWPSLRTIAAFAQPGEQGIDTPVIRAHQKFLAGDGNTRLLKYIRGEYGEPRDFADFVYLSQQVQAEGIELAALHHRASRPRTMGSLYWQLNDVWPGASWSSLDYFGRWKPLHFHAKRFFAELAIAPLRRVSDKDGGRTELSLLSDRVAPVAGEWRTRVMDFDGRVLREERKPATLAALASTRAGSWSDAELLGGADPKRTAAVFELIVDGRTVSRRAVYFAESRLLAWPDPKLSARLRRDGEGYVLSVHADKFARAVWVDFGDQDVSLADNALTLLPGETVEIAVRSKADLGSLQKGLNLRSLYRP
>NZ_CP011131.1|WP_057942807.1|2542755_2545659_+|TonB-dependent-receptor
MSQHQNRKPSQGHASQQITGRSRGFAHRNVLTAATLAALYLPLLAQAQDAAPAAAGEVKAIDKITVTGSRIKRAEIEGPAPVTVITTEQIKREGFANVYEALSSLTEVTGSVQADVNKGPTPNASPLNLRNLGPGRTLLLIDGRRVADYPLPYEGRGNFANFNNIPMSAVERIEVLASGGSAIYGSDAMAGVINIIMKKNFNGDEVRIKGGTTTRGGGDSYDLSWTGGRTGEKWSATYGVQLSGRETIFAGQRGFLASDLEPAATVKPLVNDPWPWVWGVELIDTGARRRVTPPAGACDRFQDLPQHNFLGNDGNAPEFPGYSCSQSRGNSLWSLRNGSDNRSGFGNFTYDFDNGMQAWVSASLWDSDGESRQDEALRFELNRGGAFYDQNTGRSYQARRAFTVPEAGSRDPFLFNTSERSWDLAAGLRGRFGERFNWDATVGRTEYKVDFSFPGMLQGAVDSYFLGPQLGTNNGLPVYALDQGKFWSPMTPDTFRQLTTRGKSSAESWMNQAQFAVTGDLFELPAGPVGFAGVIEAGSQGYRLNPDPLTFGPNKLYDQPGGTNQGGGERKRYAVGVEFKVPVFKTLDVTTAGRFDRYDDDARKESNFTWNAGIEWRPIESLLVRGAYNTTFRAPDMHYLFATSGTGTQEDSDVATCINRGLGPDCSSQALYYRHNIARTGNLKLDSETGKSWSAGLVWDAAENLSFSADYWHMTIDNQVRDFDIADILDLESQCRNGRTRRASDRMQVTPGSSTCQDIVSRVTRSAPGTNSFGVADPNYPLGQVVSVFSGPINIAYREVAGVDLTARYKIPETRFGDFSFQFNYTNQLKNNEQRDPGSPMQENRDKEVRTFARASASWSRGPWNATLFANRIGHVNGDNYNECAPILPGQTDTTCHMVGKLKAPVYFNLTAGYQLTEQARVNLYIDNLLDEADYKDPYKKFFAYANERVFSRVGREISAEFVYKFD
>NZ_CP011131.1|WP_083512449.1|2540174_2542589_+|family-20-glycosylhydrolase
MKDALAKSGRTKLHAAVLGLLGAAIGVVPLAQNAHAAATNAPAANAGSAVLAPELVPLPAKLQRGDGEFALDGAVTIYANNAEARAVAHLLRDELTATQGLQLPLRSGAPQARKGEADPSRYVQFVAEPVAANADARANERYSLEITARGIRLAGPPAGLFYGYQTLRQLLPVARGAQPLRVQALSIEDQPRFVYRGMHLDVGRHLYSLAFIKRYVDLMARYKLNTFHWHLTEDQGWRIEIKRYPKLTSIGSKRKETVLGRNIEPYVGDGQPYGGFYTQDEVREVVAYARARHIMVIPEIEMPGHSLAALAAYPELACTPGPFEVGGNWGVYDDIYCPKEETFKFLENVLDEVVALFPAPFVHIGGDEAPKTRWKSSEVAQAVMRREGLKDEHELQSYFIQRMEKFLHSRGKRIIGWDEILEGGLAADATVMSWRGEAGGIAAAQQGHDVIMTPTQCCYFDYGQGPAAHEQWNLGGELSLDKVYGYDPVPKVLDAAQARHVLGVQGNVWTEYLKTPAMVEYMVFPRLLALAEVAWTPQPDRDFGDFQRRLRGQFPQLDRERVGYRIPAPQGLADALQIEQGDAREYKHRFTLTPAVPGATIRYTLDGSEPGEGSPAYQGPIEIVVPLDQSRELRTVTVLADGRRSGVHSASVRYRSYLPAISKPARAATGLGYRVYEGLFSSLDEFERAGSPVAQGAASSLDVRAFGRKNRFGVRFEGFIEVPADGVYRYALQGDDRSALYIDGEPVIRNESYDQTVVASVPLRRGWHRLRIDWYQREGGLALRLQSAAPGQELRSLDARGAVH
>NZ_CP011131.1|WP_057942805.1|2537528_2539976_+|glycoside-hydrolase-family-92-protein
MGTARSLARIGPLAAALGLVLVCGSVAQAAQAARDPVREVNTFIGSKDDGNTFPGASAPFGLIQVSPIGDHYSGWRYDDPKIRGFGHSFLSGAGCWEQGGVLSVLPTTGEIGPGKRFDTKEFKSFDQKTYASSYSHDGEVGQAGYYKVRLTGEAAGDIDAEATALTRAAAERYTFPAGAKQGTILVNTGQANERHLVVGSTVQVVGDRAVEGRITTKSFCGGQQYTTWFRMEFDRPFASHGTWDETGGHPGGSNSMQGDTRPHGAWFTFDTAGGRAVTAISAISHVDAEGARRNLRDEGSKGGKPLSFDAMRKQAQDIWRKELDSVRVSGGSGDDRTVFYTALYHSLLQPLTGSDSDGRYRGYDTQIHKAEGWTYYEYFSLWDTYRSQNQLLAMLRPQRARDIANSVLNIHEQNGWLPRWGYANYDSNVMTGDPVTPFMVDLWRFGALEGREQQAYAALRENAYGTPPALVRSNGRAGNPSYLKDGFVQYDRAFPAKSMDVDPHHGGSSTLEYALGDCSLSQMAQALGKNDDAATLRERGRNWRKVWDNDAADAELGFKGFPRPRLDGGRFYSETDGTYSPRSHHGFHEGTAWQYQWLTQQDVPGVVAAMGGAEQTGKRLDAFFAYDALLADPLNAARKQWVVGPYSYYNQYRYNPNNEPDLHSPWMYTLIGQPWKTATVLRSAQALFTNAPNGVTGNDDLGTMSAWYLFSAIGLYPAVPGSGELLLHTPRFEKVELDLGQGKTLTIEAPGADGRGLQYVQSASFDGKPQDKVWLDWIALRQGGTLRFALDKTPAVGGWGTKAEALPVSACASPK
>NZ_CP011131.1|WP_083512448.1|2534498_2537408_+|TonB-dependent-receptor
MRHSTLQRSALTCALLSALFAPWGAQAAADQPDQADQAPAGAEAGQAAAARKPTEIDKVTVTGSRIKRAEIEGPAPVFTITAAQIEKEGFNTVYDALTTLTEAMGTVESDIAWGQHTVNASPLNLRNMGPGRSLLLINGRRVVDYPLPYQGKSNFANYNNIPTAIVERIEVLASGASAIYGSDAVAGVINVILKKDFQGDQVKVRGGTSTRGGRDAIDLSWAGGRSGDNWSVTYALQYFKREALPAGEREFMDSDFDAPPQSLNPQDRKVGILPSVGIRMFNADTGVRMAPPPGACDQFNGEFFLQNRRTYNRNTNTISNTGWQCGQSAVFQHWTLRNGSEDRSGYVYANYDFENGMQGWATLGVWSSRGTNMTFMPAWSSNGSYFDSGVGANLDLVRYFTPQEIGGAENGYTHSDELSWDLSAGLRGKFGERFDWDFSIGRAEYRVDEKFPAILTAEADRYFLGANRDRVDQGRLWNPISPQDYASITTRGKNRAESWLSSANFIVSGDLFEGWAGPIGFAGQLEAAKQGYSLAPDPKSLGDNRLYDQTANIDLGSGTRNHYAAGVEFKIPLLKSLTASVAGRYDKYDAVSGDAASTYNAGLEWRPFSNLLVRGTYATSFRAPDMHFVYATPSTSVADQTDYLSCLRAGQQGNCTWDAGFKVEDADISRQGTPDLKYETGSSWTAGFVWDIADGLSVSTDYWRIELEDEIDDVGANDVLLDEAYCLTGKTPTGETRLSPPSADRCKLQLGRVTRGADPDGAGPLLGPVTEIRTGPINRAARNVEGIDASLKYRLNTQRWGDFSFGLNYTNLLKLETRTDDSEQMQEKRTGEPRSKFRGSVNWQRNKWNATVYADRVGSVPSVRFGGCREFADGYVPSSDNCVDNDSASPTYGQKTEKYWGRVGPAITWNVSAGYQITDNAKINVYVSNLFDEVNEDKDPYKKDFAFIADRIFSPVGREIALEYVFDFK
>NZ_CP011131.1|WP_083512447.1|2532131_2533922_+|FAD-binding-protein
MSNDSPHDAINDDHSAPDADRHRRRFLGQALAIGAAGTGAAWWPAFAVDAASALATCAAPPAFPAQIPLFQQAYRNWSGEIQIDALWTCSPRNPEEVVTVVNWARQHGYRVRPRGMGHNWSPLNLAPDQTCAERIVMIDTLTHLNRVEIDRGAQPARVTAQAGISMQDLLARLEEAGLGLAHMPAPGDLSLGGVLAVDAHGTAVPALGETRQSGHSYGSLSNLVLSLTAVVWDAARQAYMLRSFRRDEADCAAFLAHLGRALIVEATLQAGPNQRLRCQSNVGIAASELFAAPGSTGRTFASFLDKSGRVETIHFPFTRNPWLKVWTLTPDLPPMVREAATPFNYPFSDSIPPELTDLICDINLGDVSRTPALGALQYSLVSAGLMFTASFDLWGWSRNLMLYVKPSTLRVTANGYAVITSRANVQRVVHEFVSFYQARAEAYRAQGKFPVNGPVEIRVTGLDRADEVAVRGAVEPLLSAVRPVRDRPEWDCAVWLDLLTLPGTPQAEPFYREVEQWVFSQFSGEYALARVEWSKGWGYDAVHGAWSDAAVIGQSIPNSLRYGQAADSAWDAAVAILNRYDPARVFSSPLLDRLLP
>NZ_CP011131.1|WP_187313168.1|2531820_2531982_+|hypothetical-protein
MSVAIRCAMNAAYSMRINHDRVERFALPLCDQTWITRIIGMRLRNGEFAVAAN
>NZ_CP011131.1|WP_057942804.1|2530921_2531650_+|copper-homeostasis-protein-CutC
MTRKLLEISANSLASALAAQAGGADRVELCENLREGGTTPSYGTLAVARDRLRIPLYVLIRPRGGDFLYDENDLAVMRADVETCVRLGCDGVVIGALDADGAVDAGVCAELIAAAGSLGVTFHRAFDAARDRAAALEAVIALGCERILTSGGAVDAEQGADHIAALVAQAAGRIALMAGAGVTAHNIAALAQRAQVGELHASAKAPRVSAMRYRNDGLAGLSPDWVQSDADIVRALAQALRA
>NZ_CP011131.1|WP_057945399.1|2529875_2530913_+|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase
MTSRRRFLQSSLLAAGAAALPALGAEKNTAVSTARPAAASGARVVSTWDFGVGANQAAWPVLADGGSALDAVEAGARWAEADLCNNTVGRCGNPDRDGVLTLDASIMDGDGRCGAVAALEDIAHPVTVARRVMERTPHVLLVGAGAQQFAIEQGFPKQPLLTDKARAAWNEWRKTSKYQPQINAERLDQAKPGDKTNHDTLGILAIDRSGKLAGACTTSGMAWKLHGRVGDSPIVGAGLYVDNEVGAATASGVGEEMLRNAASFLVVELMRQGRGPDEACREAIDRLVRKRPQASKTLQVCFLAINKHGEVGAHALHRGFVYAVCDANKRDALLDSPSVYTTQQT
>NZ_CP011131.1|WP_057942809.1|2550651_2552169_+|lysine--tRNA-ligase
MTDDNNLPPIDENHLIAERRAKLTALRGEGIAFPNDFRRGDYVGDLQTRYGDAEHWTQEALDAEAQRVVVAGRIVAKRVMGKASFVQIQDESGRIQLFLQSNALGEAYEAFKGWDLGDIIGAQGPLTRTKTGELSVRADQLRLLTKSLRPLPSSWFGLADVEQRYRQRYVDLIVSPDAREVFVKRSRIIRSMRAWLDSRRFLEVETPMMHYIPGGAAAKPFTTHHNALDLDLYLRVAPELYLKRLVVGGLERVYEINRNFRNEGVSTRHNPEFTMLELYEAYATYTEIMDLTEAVIRHAAQDVLGTTQVEWDGNAIDLGPGFRRWSMIDAVLEHNPEIKREELRDLTAMRAHCARLKVPAKASYGWGKLLLEIFEKTVEHTLIQPTFITDHPVEVSPLARANDIDPELTDRFELFIGGKELANGFSELNDPEDQAARFQAQVEQKAGGDDEAMHFDADYIRALEVGLPPTGGLGVGIDRLVMLLTGSSSIRDVLLFPYMRPESGG
>NZ_CP011131.1|WP_057942810.1|2552475_2553534_+|two-component-system-response-regulator
MNVVIVDDQTSARTMLRHIIEDIASELSVHDFGEPEAALAWCESHQPDLLLLDYRMPGIDGLEFARRFRRLPMHRDIPIILVTVVGDEPVRQAALEAGVIDFLVKPVRPRELRARCRNLLQLRQQSENVKQRALSLEQRLLSSMHEVEERERETLSRLARAIEFRDAGTSAYLERMAHIAGLIAEQLGMFEDEIRVIEMAAPLHDIGKIAIPDAVLMKPGPLTEEETAIMRRHPKIGYELLSGSQNRFIQAGALIALRHHERYDGSGYPDGLIGDEIPLEARIVAVADVFDALISPRPYKKAWDVDAALGYMYAQRGRLFDPRCVDALIRSRARLDEICQRYSTSSTRPGLE
>NZ_CP011131.1|WP_057942811.1|2553538_2555728_+|response-regulator
MLAILGKVRRRLSQRPDSEHAQNLVRVVITALFITYLGWRYLHQDVGDTLPATWLILIGELTVAVGLMVAIVMRPGVSHVRRWIGMLTDYSAMGAIMCIEGEPASPLYAVYLWVTIGNGMRYGNRYLRIATALASLSFFSVIMISPYWRANPYLSWGLLIGLTAVPLYFDSLLNALTRAVEDARRANEAKSRFLANMSHEFRTPLNGLAGMSELLATTRLDSEQRECLNTIQASTRSLLSLVEDVLDISAIEAGKLRLDLVEFEPRELVEGIGLILQPQARAKQLRYESRVADEVPQILRGDVVHLRQVLLNLAGNAVKFTDEGSVKLEVMLAGDADSGGLRLRFTVTDTGIGIPVAVRKRLFEAFEQADVGLARRYGGTGLGTTIAKGLTEAMGGSIGFESTEQRGSRFWVELPFDSVAAPAADPDKSTAPAGADAAVKETPENVIAFSDPFLRHRARVRSLSLLIADDHEANRMVITRLLQKAGHRAVCVDGGEAVLEALASSDYDAVIVDLHMPGVSGLDLLRELRVMEAGSGGRRTPVVVFSADVTPESIQACERAGARAFLSKPVATSRLLDTLADIASSARVSGPLIAPPRSTSYMGADQVLDAAILDELGALGMGEGFEREFVRQCLRDAEACVSALGVAGGQGDWDRVREHAHALKGVASNLGLIRLASASGELMHLIDQQMPREWQSRVSGLGERLAQGRTALDARERSRHARDDSERSP
>NZ_CP011131.1|WP_057942812.1|2555779_2556649_-|crotonase/enoyl-CoA-hydratase-family-protein
MSVVQPFPRPHSGRTLRIVEEFDRDVYWCHMHANLARAPGRACFTPSLIDDILSYQRHLGERMRQGDRHGLAHVVLASDHDVFNLGGDLDLFCRLIRERDRDGLLDYARQCVRGVHAFHAGLGAGVHSVALVQGNALGGGFEAALSCHTIVAEAGALMGLPEVLFDLFPGMGAYSFLCKRIAPRQAERLMLEGDLYTAEELHAMGVVDVLVPRGEGRQAVEDVIRANRRIPHARAAMHQVRELAQGVSLEEMMRITEIWVDTAMQLGDKSLRTMDRLVRAQSRRGIEAA
>NZ_CP011131.1|WP_057942813.1|2556829_2558509_-|long-chain-fatty-acid--CoA-ligase
MSFERPWLAHYPQGVPAQIDVEEFPSVVSVLENAIENYRDRPAFSNFGKQLTYADIDRLSAQFAAYLLGELKLKKGDRVAIMMPNCLQYPIATFGVLRAGLTVVNTNPMYTPRELKHQLDDSGAKVIFVLDNFGKTVQDVVAGTDVKVIATGLGDMIGGLKGPIMNFVLKYVKKMVPDYDIPGAVRFRDTLTLGQMHKLPEIEIAPGDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAAAWVGANAKLGEEIIITALPLYHIFALTANGLVFMKFGGLNHMITNPRDMPAFVKELKNTPFTAITGVNTLFNGLLNTPGFSEVDFSKLHLTLGGGMAVQRSVAERWKQVTGITLIEAYGLTETSPAACINPMDLPEYNGSIGLPISSTDACVKDEEGRILPMGEVGELCIKGPQVMKGYWQKPEETAKVIDQDGWLHTGDMAKMDEKGFFYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDDKSGEAVKVVIVKKDPALTAEDVKAHARANLTGYKHPKFVEFRKELPKTNVGKILRRELRDAPPSGH
>NZ_CP011131.1|WP_057942814.1|2558738_2559299_+|nuclear-transport-factor-2-family-protein
MTHAQRFADTGRLGPGRRASLAKIRRFGGPGERGQAGMGALAARVLRAMWLPALLALLAACGPSAPPEQRLRAAMEQLQGSIEKRDASAIDAQLSKDFVGPDGLDRASARRLAAASFLRYRDVGIKIVGLEVNLQPGHATVRFNAALSGGSGQVLPDAAQLYEVQTGWREEDGEWRMTSAQWTPRL
>NZ_CP011131.1|WP_057942815.1|2559498_2562264_-|aconitate-hydratase-AcnA
MSDSFSTRRQLSVNGRDYTYFSLPALGERFDIARLPYSMKILLENLLRHEDGGMTVGKEHIEAVAQWDAKKEPDQEIAFMPARVVLQDFTGVPCVVDLAAMRDAVGKLGGNARQINPLIPSELVIDHSVQVDVFGSPEALDLNGKIEFQRNKERYSFLRWGQKSFENFKVVPPNTGIVHQVNLENLARVVMGREVDGDLLAFPDTVFGTDSHTTMINGIGVLGWGVGGIEAEAAMLGQPSSMLIPQVVGFKLTGQLPEGATATDLVLTVTQMLRKHGVVGKFVEFFGDGLQHLPLADRATIANMAPEYGATCGIFPIDAESVTYLRLSGRSEEQIALVEAYAKAQGLWHEPDQPHATYSATLELDLGDVRPSMAGPKRPQDRVLLENVHTNFQENLGPLVANRKSKVGCAIEELKGEGGDQPQAQQLAAKPVSKIRIKDQDAELSDGSVVIAAITSCTNTSNPAVMLGAGLLARNAARLGLKSKPWVKTSLGPGSLVVTDYLKKAGVLSELEKLGFYVVGYGCTTCIGNSGPLPDEVSKGIAEHELVVASVLSGNRNFEGRVHPEVKANYLASPPLVVAYAIAGTVNIDLTHDPIGKSSDGKDVYLRDIWPTNKEIGDMIAATVGPELFAQNYADVFKGDTRWNQIESPDGESFQWDSSSTYIKNPPYFDGMTMDVGSIDDVHGARVMGLFGDSITTDHISPAGNIKKDSPAGRFLQERGVQPADFNSYGSRRGNDDVMVRGTFANIRIKNLMFGGEEGGNTLYFGKNGGQGEKLAIYDAAMKYKADGVPLVVFAGKEYGTGSSRDWAAKGTNLLGVKAVIAESFERIHRSNLVGMGVLPLQFKDGENAQSHGLDGSEVIDVIGLEDGKAKTATVVARKADGSEQTFEVKVLLLTPKEVEYFRHGGILHYVLRQLAAKKAA
>NZ_CP011131.1|WP_057942816.1|2562439_2563345_-|LysR-family-transcriptional-regulator
MSINCEILDLRAFLTVSETRSFHRAAEALHVSQPALSRRIQKLEEAVGAPLLERTTRSVSLTAVGQNLLPLVRRMLEEFDGSLFAARGIDDGRGSQVTIACLPTAAFYFLPSVIARFHEEHPNVRFRILDLSATEGLQAVERGEVEFGINFMGASDPELNFDVLVEDPFVLACRRDHPLALKRKVTWNDLSSHRLITVHRTSGNRILLDGALARENLKLSWFFEVTHLSTSLGMVEAGVGISVLPRMATPQQEHPILVTRPLQHPVVSRTIGIVRRRNAVLSAAAEQFLQMLKTTWQGRAK
>NZ_CP011131.1|WP_057942817.1|2563452_2564562_+|4-oxalomesaconate-tautomerase
MSSDLLSVPCVLMRGGTSKGPFFLAEDLPADPALRDALLIDVMGAGHPLQIDGIGGGNPLSSKVAIVDRASRADADVDYLFAQVRVDQRVVDTTPNCGNMLAAVAPFAIEAGLVAARHPQTQVRIHNVNTGKVVIATVQTPDGRVKYRGDTAIAGAPGTGSPIPLTFLDAAGARTGRLLPTGRASERIDGIEVSCIDCAIPMVLLPAQALGLRGDEAPAQLDADAALLQRLEKIRIEAGHRMGIADAAERVIPKPVLLSPPMHGGTLQVRYFMPQRCHGALAITGAVGIATACATEGTVARSILGEHDLAKPIRLEHPSGTLEVRLERAAADDAIVASVVRTARRLLEGRVFTSLLPGSGTASAWTSAA
>NZ_CP011131.1|WP_057942818.1|2564636_2565680_+|ABC-transporter-substrate-binding-protein
MFSRKFIAAAAIVLVAAAAALAGCGQGAIVGSERRPVRISVGSYNLNNLPFFVADANGYFAEAGVHVRTENFAQGGSKVLQALVAGSTDVAVGFYDHTIQMQAKHKEVSAFVLLSRNSGLVLAGRNDTRFDPKQPQSIGGLKIGITAPGSSSDFFVRHFLSRHGIDENAVSIIGVGSGAAAVAALQQGKVDLLVNYDPAATLIESRGIGRILIDARSDEGARAVYGGLYPTSVLYAQSGFLQEHPQVAERIARAQLKALRFIESTPPEQIVAALPDRYVSGDRAAYAQAVARAKAIFSRDGRFVAADLQTPLAVLREFDRSVAGAKIDLDKTYTNRFVDDALAASSR

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Crispr_ID: NZ_CP011131_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_12

2785619-2785741

Orphan

Consensus_repeat	Method
CTGGATGTTCGGCTACGCCGAAGTAAAGCGGAGCCCGCCTTCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011131_12

>merge|NZ_CP011131|12|2785619-2785741|CRISPRCasFinder
CTGGATGTTCGGCTACGCCGAAGTAAAGCGGAGCCCGCCTTCGCGAGAATGACGGTCTGGGGGATGGCGCTGAAGTCGCTGGATGTTCGGCTGCGCCGAAGTAAAGCGGAGCCCGCCTTCGCG

>NZ_CP011131|12|10|2785619-2785741|CRISPRCasFinder
CTGGATGTTCGGCTACGCCGAAGTAAAGCGGAGCCCGCCTTCGCG	AGAATGACGGTCTGGGGGATGGCGCTGAAGTCG
CTGGATGTTCGGCTGCGCCGAAGTAAAGCGGAGCCCGCCTTCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_057942931.1\|2773919_2776376_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NZ_CP011131.1\|WP_057945420.1\|2773572_2773905_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|239606
NZ_CP011131.1\|WP_057942942.1\|2795036_2796872_-\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|274541
NZ_CP011131.1\|WP_057942939.1\|2788189_2788834_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659
NZ_CP011131.1\|WP_057942945.1\|2800195_2801605_+\|type-VI-secretion-system-baseplate-subunit-TssK	unknown	unknown	gnl\|CDD\|377569
NZ_CP011131.1\|WP_148649193.1\|2780847_2781774_-\|MltA-domain-containing-protein	unknown	unknown	gnl\|CDD\|270618
NZ_CP011131.1\|WP_057942937.1\|2784957_2785254_+\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269823
NZ_CP011131.1\|WP_057945423.1\|2791265_2793923_-\|type-VI-secretion-system-ATPase-TssH	unknown	unknown	gnl\|CDD\|274528
NZ_CP011131.1\|WP_057942938.1\|2785759_2788147_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235571
NZ_CP011131.1\|WP_187313191.1\|2776402_2777572_-\|NarK/NasA-family-nitrate-transporter	unknown	unknown	gnl\|CDD\|225133
NZ_CP011131.1\|WP_057942944.1\|2799156_2800128_+\|TraB/GumN-family-protein	unknown	unknown	gnl\|CDD\|350614
NZ_CP011131.1\|WP_057942934.1\|2779758_2780763_+\|siroheme-synthase	unknown	unknown	gnl\|CDD\|182606
NZ_CP011131.1\|WP_057942941.1\|2793919_2795026_-\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|377755
NZ_CP011131.1\|WP_083512884.1\|2782555_2783002_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP011131.1\|WP_057942933.1\|2779091_2779667_-\|ANTAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|226230
NZ_CP011131.1\|WP_083512477.1\|2788846_2791135_-\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|274542
NZ_CP011131.1\|WP_057942936.1\|2783242_2784487_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP011131.1\|WP_057942943.1\|2798194_2798881_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP011131.1\|WP_057945424.1\|2797039_2798029_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270293
NZ_CP011131.1\|WP_057945421.1\|2777997_2779071_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_057942931.1\|2773919_2776376_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	0
NZ_CP011131.1\|WP_057945420.1\|2773572_2773905_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|239606	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.	5.23143e-49
NZ_CP011131.1\|WP_057942942.1\|2795036_2796872_-\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|274541	TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family. This protein family is associated with type VI secretion in a number of pathogenic bacteria. Mutation is associated with impaired virulence, such as impaired infection of plants by Rhizobium leguminosarum.	0
NZ_CP011131.1\|WP_057942939.1\|2788189_2788834_-\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	2.51241e-13
NZ_CP011131.1\|WP_057942945.1\|2800195_2801605_+\|type-VI-secretion-system-baseplate-subunit-TssK	gnl\|CDD\|377569	pfam05936, T6SS_VasE, Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE. T6SS_VasE is a family of of bacterial proteins that are essential for the type VI pathogenic secretion system, although the exact function of this particular component of the system is still not known.	6.21605e-66
NZ_CP011131.1\|WP_148649193.1\|2780847_2781774_-\|MltA-domain-containing-protein	gnl\|CDD\|270618	cd14485, mltA_like_LT_A, Domain A of MltA and related lytic transglycosylase; domain A is interrupted by domain B. Escherichia coli MltA is a membrane-bound lytic transglycosylase comprised of two domains separated by a large groove, where the peptidoglycan strand binds. Domain A is made up of an N-terminal and a C-terminal portion, which correspond to the 3D domain, named for 3 conserved aspartate residues. Domain B is inserted within the linear sequence of domain A. MltA is distinct from other bacterial lytic transglycosylases (LTs), which are similar to each other. Escherichia coli peptidoglycan lytic transglycosylase (LT) initiates cell wall recycling in response to damage, during bacterial fission, and cleaves peptidoglycan (PG) to create functional spaces in its wall. PG chains (also known as murein), the major components of the bacterial cell wall, are comprised of alternating beta-1-4-linked N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), and lytic transglycosylases cleave this beta-1-4 bond. Typically, peptidoglycan lytic transglycosylases (LT) are exolytic, releasing Metabolite 1 (GlcNAc-anhMurNAc-L-Ala-D-Glu-m-Dap-D-Ala-D-Ala) from the ends of the PG strands. In contrast, MltE is endolytic , cleaving in the middle of PG strands, with further processing to Metabolite 1 accomplished by other LTs. In E. coli, there are six membrane-bound LTs: MltA-MltF and soluble Slt70. Slt35 is a soluble fragment cleaved from MltB. Bacterial LTs are classified in 4 families: Family 1 includes slt70 MltC-MltF, Family 2 includes MltA, Family 3 includes MltB, and Family 4 of bacteriophage origin. While most of the LT family members are similar in structure and sequence with a lysozyme-like fold, Family 2 (including mltA) is distinct.	4.25581e-38
NZ_CP011131.1\|WP_057942937.1\|2784957_2785254_+\|PAAR-domain-containing-protein	gnl\|CDD\|269823	cd14738, PAAR_2, proline-alanine-alanine-arginine (PAAR) domain. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family, where it forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). The T6SS is responsible for translocation of a wide variety of toxic effector molecules, allowing predatory cells to kill prokaryotic as well as eukaryotic prey cells. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes. It has been shown that PAAR proteins are essential for T6SS-mediated secretion and target cell killing by Vibrio cholerae (encodes two PAAR proteins) and Acinetobacter baylyi (encodes three PAAR proteins); inactivation of all these PAAR genes results in inactivation of Hcp secretion as well as T6SS-dependent killing of E. coli.	2.85379e-40
NZ_CP011131.1\|WP_057945423.1\|2791265_2793923_-\|type-VI-secretion-system-ATPase-TssH	gnl\|CDD\|274528	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP011131.1\|WP_057942938.1\|2785759_2788147_-\|hypothetical-protein	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0.00667858
NZ_CP011131.1\|WP_187313191.1\|2776402_2777572_-\|NarK/NasA-family-nitrate-transporter	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	3.69406e-99
NZ_CP011131.1\|WP_057942944.1\|2799156_2800128_+\|TraB/GumN-family-protein	gnl\|CDD\|350614	cd14789, Tiki, Tiki homology domain antagonizes Wnt function via cleavage of amino-terminal residues. Tiki is a membrane-associated metalloprotease that inhibits Wnt via the cleavage of its amino terminus, diminishing Wnt's binding to receptors. Wnt is essential in animal development and homeostasis. In xenopus, tiki is critical in head development. In human cells, TIKI inhibits Wnt-signaling, which is important in embryogenesis, homeostasis, and regeneration. Deregulation of WNT contributes to birth defects, cancer and various diseases. TIKI homology domains are part of the TraB family and are related to the Erythromycin esterase, GumN plant pathogens, RtxA toxins, and Campylobacter Jejuni heme-binding, Chan-like proteins. TraB/PrgY are identified in gut bacterium Enterococcus faecalis, but its function has not been well characterized. Plasmid-borne, TraB has been implicated in the regulation of pheromone sensitivity and specificity. Based on homology to TIKI activity, it has been proposed that TraB acts as a metalloprotease in the inactivation of mating pheromone. The TIKI/TraB family has 2 conserved GxxH motifs and conserved glutamate and arginine residues that may be catalytic.	2.60929e-49
NZ_CP011131.1\|WP_057942934.1\|2779758_2780763_+\|siroheme-synthase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	1.18221e-72
NZ_CP011131.1\|WP_057942941.1\|2793919_2795026_-\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|377755	pfam06996, T6SS_TssG, Type VI secretion, TssG. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssG. TssG is homologs to phage tail proteins and is required for proper assembly of the Hcp tube in bacteria.One other member in this family, SciB (Q93IT4) from Salmonella enterica, is thought to be involved in virulence.	7.90549e-100
NZ_CP011131.1\|WP_083512884.1\|2782555_2783002_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	1.35997e-32
NZ_CP011131.1\|WP_057942933.1\|2779091_2779667_-\|ANTAR-domain-containing-protein	gnl\|CDD\|226230	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms].	3.72155e-47
NZ_CP011131.1\|WP_083512477.1\|2788846_2791135_-\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	0
NZ_CP011131.1\|WP_057942936.1\|2783242_2784487_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.03825e-12
NZ_CP011131.1\|WP_057942943.1\|2798194_2798881_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.80698e-48
NZ_CP011131.1\|WP_057945424.1\|2797039_2798029_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270293	cd13575, PBP2_PnhD, Substrate binding domain of ABC-type phosphonate uptake system; contains the type 2 periplasmic binding fold. This subfamily includes the Escherichia coli PhnD (EcPhnD) which exhibits high affinity for the environmentally abundant 2-aminoethylphosphonate (2-AEP), a precursor in the biosynthesis of phosphonolipids, phosphonoproteins, and phosphonoglycans. The Escherichia coli phn operon encodes 14 genes involved in binding, uptake and metabolism of phosphonate, and is activated under phophophate-limiting conditions. PhnD belongs to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. The PBP2 have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. PhnD is the periplasmic binding component of an ABC-type phosphonate uptake system (PhnCDE) that recognizes and binds phosphonate.	1.88824e-63
NZ_CP011131.1\|WP_057945421.1\|2777997_2779071_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	1.19198e-96

>NZ_CP011131.1|WP_057942937.1|2784957_2785254_+|PAAR-domain-containing-protein
MPPAARLGDMHVCPMATPGTPPVPHVGGPILPACCPTVLVGGQPAARIGDMALCVGPPDVIAQGSPTVMIGGMPAARIGDATAHGGKIVQGCPTVMIG
>NZ_CP011131.1|WP_057942936.1|2783242_2784487_-|HAMP-domain-containing-histidine-kinase
MPAQRRLSSWPRWLRSPRARAWALAGALVLVVCAVSVVRVAALDATPADGQGPRPSHAQAASPHAVEGAPRLARADGTDAGEARIWRQGAQVIVVLLLLFGGYDVSCRLRPARDPSAPVQSPPVADTIPSGDMLAIAGDRMRQSLHALSLFAGSLNHGALPAQRDALHGLEASVRDLAGMIEEVEQISRLLRHEVPVRAIDLPVAQLFDSLRGLLVREARGVGVEVHWRSGDLCLRGDVLLAERLVHVLVGSAIHRARHRVLVAARPVAGRVALQIRDDGDRLDIAADAPVLDALSRHAQAIGERDTALGLAVGARIAELLEVGVGIRRGQRRGNTIAIDFPRARPASPPPDDATLLSLALLESEARRGQPPPSRLSTVSDTGHGGDAHSGTRNVEPAPMRTAPTSRGDIDRSR
>NZ_CP011131.1|WP_083512884.1|2782555_2783002_-|OmpA-family-protein
MIKNLGSGKDATPATGTRALRPGAAVTATAATQPPRTASISMQIQFDFNSDAVSASSQTTMANLAQAMQSPELASRRFLIIGHTDGKGSAQYNQRLSERRAASVKRSLIRDGVPADRLETAGRGKSQLLNGDDPYAAENRRVEVQASG
>NZ_CP011131.1|WP_148649193.1|2780847_2781774_-|MltA-domain-containing-protein
MQIQGSGKIRVEDGTLIRVSYAEQNGHPFLPNITRGIDTSTVLTAIKIRGLSVGGSTGGSRVDPAVSAPVNNEVARLIALFQGSGKPGTASSARPSANPGSAVRVKPKATSNSADVAALIAALKGGATAAPRANPSSVASASAKPASARPTLPVSATGAPALTNIPDPSYVFFRSSGDGPEGPIGALGVPLTAGRSLAVDPRSTPLGSPVFISTKEPAGSGPLRRLMFAQDTGGAIRGSVRGDLFWGFGDSAGRLALATNEVAQMWLLLPKTQVVSAARNAGPTLRSLRNSARLPDCVIDDPDLCVED
>NZ_CP011131.1|WP_057942934.1|2779758_2780763_+|siroheme-synthase
MTLFPLLADLSGRPVLVVGGGEVAVRKIEALLRAGARVRVHARALDPVLQGWLEQGRLTRLDGEFDPAWLDGVWLLVAATDDHAFNARLAEQAHARGLWANVVDDAQLSSVQIPAVVDRAPLQVAISSGGAAPMLARRIRERLEIELDHSLGDFATLFARHRDAIRKRFPALPQRRRWFDRVIDGPVSVLLRNGRHEDAERAFRDALESDRDDDNAGSVALVGAGDGDPGSLTLKALRVLNQADVLVCDPALPAAVIDMARRDATRLTAPQDREALVELLVRHAGNAMRVAYIKAGDAFRMAPDSALRAVLERRNVVCEVIAGVCDGPARAPGA
>NZ_CP011131.1|WP_057942933.1|2779091_2779667_-|ANTAR-domain-containing-protein
MPRILLVNDTEKPIGELRDALLGAGHEVLEEVVAIGALLKAVESQQPDVVILDIDSPSRDTLEQLALMHEHAPRPVVMFSADGNEQLIRAAVGAGVTAYVVDGLSPARLAPIIQVALARFEHQSHIRRRLDEVQQQLLDRKLIDRAKGLLMEKRGMAEADAYAALRQQAMKNGTKLVDVARQIIAMADLLG
>NZ_CP011131.1|WP_057945421.1|2777997_2779071_-|ABC-transporter-substrate-binding-protein
MTAPAAASDRPLRLGYLPLVDCAPLVAAVRLGLDRRYGLRLQLQRQASWAAVRDRLLSGELDAAHALAGLVYGVETGIGGPKGELAILSTLNQNGQAITLSSQLARSLEQGLSLRDALASLRRPAVFAQTFPTGTHAMWLYYWLAAQGIDPMREIRILTLPPTQMPEALARGELDGYCAGEPWSMQAELAGVGRRVIRSGTIWPGHPEKVLACRREFAALQPDAAIALTATVLDACRWLDADMRHRREAARWLADSQVIALPARDIEACLLPADGDGQTQLRFHADGQANFPWLSDGLWFLAQFRRWGWLPPALDGEDAALIGRVHRIDSYRQAAQRIGVPVPDGDSRAHRLFDETS
>NZ_CP011131.1|WP_187313191.1|2776402_2777572_-|NarK/NasA-family-nitrate-transporter
MLSAFLYFDLSFMVWYLLGPLQVQIAQALHLDTQQRALMVAVPILCGAILRLFLGMLADAIGAKRTGLLAQAAVMLTLLAAWGLGVHSFAQVLLLGALLGIAGASFSVALPLASRWYPPEHQGTALGIAGAGNSGTVLAALFAPVLAAAFGYEAVFGLACLPLALVMIVFFACARDAPVEIERKRFSDYGRVLIGNRDSWWFMFFYSITFGGFAGFASALPGYFHDQFGFDPKIAGWATAACVLAGSAMRPLGGVIADRIGGTRTLLAVYLSVAVLVAAAGQGVGGAAITVTLFVATLLCLGAGNGAVFQLVPQRFGADIGLMTGLIGMAGGIGGFLLAAGLGVLKQHTGSYALGLWAFAGCALLAWGLLSNVSKQWRHQWAALSAARV
>NZ_CP011131.1|WP_057942931.1|2773919_2776376_-|NAD(P)/FAD-dependent-oxidoreductase
MKKPRLVVIGNGMAGMRTLEELLKLVPDMYDITVFGAEPYPNYNRILLSPVLAGEQNFDEIVLNPMAWYAEHGIELHLGKEVERIDRVHRRVIAADGTQAQYDRLLLATGSLPIVLPIPGKDLRGVISYRNIHDTRAMIEAAKVKKHAVVIGGGLLGLEAANGLKQRGMDVTVVHLAGWLLERQLDPVAGRLLENSLRERGLKFRLGTSTTELLGDDHGEVRAVRFSDGSEAPADLVVMAIGIRPNAQLAQTAGIYCNRGVMVNDSLQTFDPRVYAVGECASHRGITYGLVAPLFEQAKVCANHLAHYGIGIYAGSVSSTKLKVTGIDLFSAGDFMGGDGSEEIVLSDPAGGVYKKLVIKDDKLVGACLYGDTGDGGWYFKLLKDGGRIDGLRDRLMFGEKAIGDSGTAGQNRAVTMADADEVCGCNGVRKGAIVKAINEQGLFTIDEVKKHTKASSSCGSCTGLVEQILMNCLGSNFQETPKTKAVCGCTSHTHAEVRKAIAEHRLLSHRQAYEFMQWRTPNGCATCRPAINYYLISTWPREAADDPQSRFINERAHANIQKDGTFSVIPQIKGGVTNADELRRIAHVADKYAVPMLKITGGQRIDLLGVKKEDLLDVWRDLGMKSGHAYGKSIRTVKTCVGSEFCRFGTQNSTQMGIDLETMLANMWSPHKVKLAVSGCPRNCAESGIKDVGIIAVESGWEIHVGGNGGIKTEVAKFLTKVKTADQVREYTGAFLQLYREEAYYLDRTVHYIERVGLDYIRRRVVDDAADRKSLYERLLYALDGLIDPWEARVREDRRPREYEPLRMPAQLAGQEN
>NZ_CP011131.1|WP_057945420.1|2773572_2773905_-|nitrite-reductase-small-subunit-NirD
MEHSLTWLRVCGLDDIPALGARVLKRDGADDIALFRTGEDRVFALRDRCPHKGGALSQGIVAGDTVTCPLHGWNIALGSGQAQAPDVGCAHRFQVRVEHGDVWLALEGDG
>NZ_CP011131.1|WP_057942938.1|2785759_2788147_-|hypothetical-protein
MGIISNAGNAAKGVTDTLTDNVVGDAIDAVAGGLTGQSGGGASATAHYIAGEALDPRLSKAASIAAQPEPVGSDPGTQAKPGSHVPFDARKPLQFVHLSFAHDDHADRFPGESAAHGIAMRDALIREDVLIYSFARAAQRVLEQAKASKGAAGAMLDTAGSLLGGKAQASSGPEAIDPVLDAIRAAADPVNVDAPGYPEVHAAGVKLAEAWATLHETCKTALQPAAGGGMGLPSIPGLSSLAGGAGIPEVVAKIPEWLFKVQDAYQAMYRASRQAYEWDIIKACHDYSIQAIAQQRKPGFDIWFLLGEKQGETVGEDSDVEQTLENAQRSLRGLPLVGGSAPVDDAAGALGGVQKAIRDARKEARGKAGDITGWLATTESERSNLPEGSAAALSAAIAALNGKPQAQPPLPALAPLMAQALGEALLGAGKPLPGFMQTGVGVIADIAMVLLPKVYSHLHGRLGLPDPALILAATHDAVAGKIVDLIWAWIFGKGSAPGRNNEADMKERGTRMIDDLSRGSLASGGLPGISALENKAADLVRDFIRDNGHYIDALIEFLAEDLHKELAAAQADCAGKSCLTMEAYLGRLPMLAALLMRNLTFPVFNLVLKIFGIGDQVAGMVWNPVDEKIRQAGAIARGIQNTKNDVRRAGEDIDAGSRRVENKLDDQERSITGQAGKLTDPNESVSSWNDVTGLAGRKEGEAGRLADTIGRAPNELIQAAKGEDKEDAPPPAQAPTGSGPISAPRVRDGTAKPVAPGEIQQAGRVRPETEAEAIAARNQPAAAPPAAAAAPSLPF
>NZ_CP011131.1|WP_057942939.1|2788189_2788834_-|peptidoglycan-binding-protein
MASDASAGERHVIGKGESLASIAKERGFLWRTLWEHGNNAKLKAKRKNPNQLVEGDVLFLPEKGDKQIAKPADARHRFKRRGEPTRLKLQMLDSGEPRRNEAFTLVFGDKVIHGKTDGDGKIDQPIPGETRAAALSFGDGSESYSVEIGLLDPSGLASGLQHRLNNLGFHCGGEDGDIGEATRDALLRFQRAQGLAESGEADEETRARLDALHV
>NZ_CP011131.1|WP_083512477.1|2788846_2791135_-|type-VI-secretion-system-tip-protein-VgrG
MPLSTQHRMFQLRCPLGEDALLVRGVQGREALSRPFEFSLDLISDRDDIQPEDVIGKRSTLCIETMDGERHFTGLMSRFSRVGATPAPEGAQGEFYAYECDLVPWLWFMLQHEDSRIFQDKSIPDIVEEVFKQFQFTDYELRLSGEHPPLTYCVQYRETNFAFISRLLERAGIYYFFRHEPETETLVLTDNRDHNPRLEPDTLPFHDLAMAEASDCVTALKRRERIHTGRVVLRDYDFERPSTDLEVSVDSLVHIGDNSNYERFVHPGGYTDRALGEGLARVMIESEEADQDLLDATSDVRTLMPGHVFGLERHPEDALNEDYLVVAVEHRGRNNLGSDQDSGYDNRFSMIPHRVQYRAPLLTRKAHLRGPQTAVVVGPPGEEIHTDKYGRVKVKFRWDRTPSADDKSSCWLRVAQMWAGKQWGAMFVPRIGMEVLVDFLEGDPDQPIVVGCLYNGENMPPYALPAEATKSTFKTYSSKGGEGFNEIRFEDKKGEEQLFLHAQKDMDLRVGNDRREWVENDRSLVVKRDRLEETHRSHHSFVKKDRVSEIEGDDHLAVKGKQAIKIAGSKSLKVDGAVGESFQSHSEQVAMNYYLNAGANVVIEAGAMLTLKVGGNHVTLSPAGVAIVGAMVLVNSGGAPASGSAASLVPPLAATAAAAAASAKPGQKPEASPLGDKRPGKPPDRSNYDPDSDENKDKTHWIEVELVDEAGRPVAGERVQITLPDGSISGGTTDEKGLLKVANIDPGDCQIGFPDLDKDAWE
>NZ_CP011131.1|WP_057945423.1|2791265_2793923_-|type-VI-secretion-system-ATPase-TssH
MNLRSLVGRLNTTCRGAVESAAGLCLSRSHYDVEIEHVLLKLLEVDNSDLRRILRQFDIAPERVEQALAQALDGLKSGNQRTPALSPHIPLLLERGWAWASIEFGEARVRSGHLLVALLADAELRRLLGNVAAALAPINLETLLQNFHALVDASVEARDARALGDTGGTPASADAASAGGRPSATPNLDQYCQNLTQRARDGKLDPVLGRDGEIRLMIDVLMRRRQNNPILTGEAGVGKTAVVEGLAARIAAAEVPPPLRNVELLSLDLGLLQAGASVKGEFENRLKGVIEEVKSSTKPIIVFIDEAHTLIGAGGAAGQNDAANLLKPALARGEMRTIAATTWSEYKKYFEKDPALTRRFQVVKVDEPEDDKAVAMLRGVARAMAAHHRVRILDEAVRDAVKLSSRYIAGRQLPDKAVSVLDTACAKIAIGQSATPAQVEDTRRRMEEIATERAQLERETAGGGDHLARLAELAEEHTALQQRLEALDGRWQGEKDLVAKIHERLDAAEAPDADAAVRAAAVSELDALHAELRGLQGEAPMVLPVVDATAVAQIIAGWTGIPVGRMVADEIQTVLNLREHLEQRVIGQGHALEAIAQRVRTSRANLEDPNKPKGVFLLVGTSGVGKTETAIALAEMLYGGERSMITINMSEYQEAHTVSSLKGSPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVLELFFQVFDKGRMEDGEGREIDFRNTVIILTSNAGTDLVMQACRGADALPDGGLPSVERLNELLKPELNRVFKPAFLGRTTVIPFYPLDDANMRKIVRLKLGKIARRIQANHGARFDYDDALVDAVAARCTEVDSGARNIDNILTGSLLPEVAAEVLTRMSRGAALSRIHAGIDAHGRFAYSLE
>NZ_CP011131.1|WP_057942941.1|2793919_2795026_-|type-VI-secretion-system-baseplate-subunit-TssG
MADTVSLPPPPIASTAGSERPVAPIERLREDPQAFGFFQAVRLIYRAHDFDARGSAARPGPLRFLTPASLNFPPAELAALEADNAGGWRMRVHFLGLTGPSGVLPRHYTEWLIAQGAQRDRAAQDFLDLFNHRLITLFWRAWGKYRADIGLEFGFRNSPLHYVHHLIGLGTPALQARVQVRQPSAKSAPAQPRLPGAATAYFAGLISQRPHGAGALSQVVGDVVGAPVAVEGCLGTWQRVPAADRTRLGRATSALAGGCLLGDRFWDRQTTLRLRIGPLDRASFRRLLPRGELLSDVVELARFLTGLALDLRIELSLRADEVPPLALGERGADRPQLGWNTWLRGRRGAASADECEFHFSAMGGQSWR
>NZ_CP011131.1|WP_057942942.1|2795036_2796872_-|type-VI-secretion-system-baseplate-subunit-TssF
MLDELLPYYENELTYLRRLSKEFAGRYPKIASRLMLEGDVCEDPHVERMIESFAFLTARIHKKLDDEFPQITEALLSVLYPHFLRPVPSMSIAQLRPSAGAELTAMQHLPRGTALLSRPVNGVPVRYRTAYPVDIWPLRVADARLESAERSAFALHRPGSVATLRIRLEAQGQTPLSQLDLRKLRVYLDGESPVTHALYEILLNATAAICLRAPNGSPQTPPLQLSRESLRAVGFGEDEGLLDYDARSFLGYRLIQEYFVLPEKFLFFELDGLDLSRFEDAVELVFEIQPFGRQERLPRLEQAVGPDTFRLNCTPIVNLFKQQAEPIRLSQQRHEYPVIADVRRPQGLEVYSVDSVRKFSRTADQANVVDFVPFYSIRHGLHDSDEGCHWYTQRHPSSRPNDDGSEMSIALVDRDMNPHVPAVDTLSLSLTCTNRDLPSQLPFGGEESLLQVEQGGVIAQARLLKKPTATWRAPMRMANQWRLISHLALNHLSIVGGGREALLEILSLYNYADSASLRKQIAGIVDVDSRPSVTRIGRAPRQAFVRGTDVELTFDESQYVGGGVYLLARVLDVFFGLYCTSNSYTRLSVRSQQREGLLAGFAPRAGALPLV
>NZ_CP011131.1|WP_057945424.1|2797039_2798029_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MWSLLLCIGIAGAAAAAPPAQPVPAAQATPLRFGILPTGGPAESRQDWQALLDDLAKALNRPVESVSVSTYEGMHQAIAAGRVDVAFLSGKLALDSVLNNNMQVSVRLTRLDGTPGYRSVLIARRSGPIRNLATLLAAPGRWRYARSEPLSVSGYLVPEAQLFARRDLSSDLFFKSVTINNHQNNALAVANGEVDVASNNDADLERFAVRFPRQHAQLRVLWQSDLIPHAVLVVSRSLPAETRAAVRRFLIDYGRGGDAVRERRNLLKIHELSGFEAADNRALLPFEEIEYILEMQQAHSARWIDENAKRARLERLRAEHDRIERQLTR
>NZ_CP011131.1|WP_057942943.1|2798194_2798881_-|response-regulator-transcription-factor
MRVLIADDHRLIVEGVKTKLSELEHQVEFVVAMNIAEFDAVVNRPDSPLDLAIIDISMPGAQGHRHIAEMRRVAADVPIIVLSGSEDTELIRTLLELGVQGFIPKAYSPDVMLSAVRLVLSGGVYVPPLLLAGVQARGWTPAVEMPAAARNLSATVEQHSLDGLRQILTERQIDVMRLLSQGKPNKLIARNLGISEGTVKIHLAAIFRALNVRNRVEAVVASRRLVEP
>NZ_CP011131.1|WP_057942944.1|2799156_2800128_+|TraB/GumN-family-protein
MLAVAALVCGCTRTAALAAKPEPAQIPVSIPQPPSSPSRGILFRIEPAQAVMPAAADASAPQTRSPPPRASSYLFGTIHFGNDEELGLSPELLASALSSSFTLVNEIDLAAPGDGDLDRYRWLPPEQSLSALISAEGFAMAQTLLPQIPPPTLQRMKPWMVLALLEARGEQAGEQTLDDRLQRIASERGMRIVHLETAEDQLRALDCIASENQARVLEERLKTPQVMREMSERALRHYRERDLDAWLADVDRMVGLDGESKDIEMRARRCLIEERNQRWLPELLALLDQGGCYIAVGAIHLPGEHGLLAALKHAGYRIEAEPL
>NZ_CP011131.1|WP_057942945.1|2800195_2801605_+|type-VI-secretion-system-baseplate-subunit-TssK
MNRHRQVFWGQGAFLSPQHLQAQDAWHQAMRQGVQRAITPYPWGLETLVLREDALASGVVDIEQIELHTRDGERLAGGSALAGGNARIPDRALQDLTPRNNDPIALWLVLNRERTVHGLGPAGRLSERHALASDSLEDPFDPQAPAADVDFLLYQPMIVTSLDDNAEVLVRSCEAYKFAEIVPVGPGKYRLSNDYVPPLLALQASRNLSRWTRALRDLLTSRGQDFAASKRQRGIRAASTSAQEVMRVAMMQTFARYIPVFAEHVRLGTVPAYALYQQLRALVAEFSVFSEDIGYFGGLAANPAETELPDYDHDDLRHCFRIAFERAEALIKALTVGAEVGIALAFDGRFYKADLPANLFESDKTRFYLAFESDLRGQDLFTRLSRTGKIASTEEMPRLLSAALFGLKIDLLPVPPEELPQKTPNTTYFLVDTAHPFWQMIKNARNICVFCDLPSDATAIKLYPIGAQE

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Crispr_ID: NZ_CP011131_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_13

3609445-3609559

Orphan

Consensus_repeat	Method
CTTTTCCGGGAAGGTACCGGCCGTTGGATCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011131_13

>merge|NZ_CP011131|13|3609445-3609559|CRISPRCasFinder
CTTTTCCGGGAAGGTACCGGCCGTTGGATCGGCGCACGGGCGGTTAGGTCTTAAAGAAAAAGCCCCGCGGGCGGCGGGGCTTTCTTTTCCGGGAAGGTGCCGGCCGTTGGATCGG

>NZ_CP011131|13|11|3609445-3609559|CRISPRCasFinder
CTTTTCCGGGAAGGTACCGGCCGTTGGATCGG	CGCACGGGCGGTTAGGTCTTAAAGAAAAAGCCCCGCGGGCGGCGGGGCTTT
CTTTTCCGGGAAGGTGCCGGCCGTTGGATCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_057943498.1\|3606396_3606786_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319925
NZ_CP011131.1\|WP_057943501.1\|3612258_3612789_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|234739
NZ_CP011131.1\|WP_055910472.1\|3618816_3619086_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP011131.1\|WP_036113830.1\|3620880_3621201_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP011131.1\|WP_057943500.1\|3611165_3612116_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP011131.1\|WP_031371911.1\|3620607_3620868_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP011131.1\|WP_057943502.1\|3615765_3616800_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP011131.1\|WP_057943497.1\|3605906_3606272_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057943503.1\|3617029_3618664_-\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|240528
NZ_CP011131.1\|WP_083512552.1\|3603410_3604886_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP011131.1\|WP_057945504.1\|3609854_3611123_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP011131.1\|WP_057943496.1\|3605139_3605436_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057943504.1\|3619360_3620428_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237047
NZ_CP011131.1\|WP_148648919.1\|3601554_3601767_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_083512554.1\|3612865_3615757_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NZ_CP011131.1\|WP_057945502.1\|3599492_3601208_-\|hydrogenase-maturation-protein	unknown	unknown	gnl\|CDD\|187719
NZ_CP011131.1\|WP_083512906.1\|3602197_3602530_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|239274
NZ_CP011131.1\|WP_148648920.1\|3602682_3603222_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_187313023.1\|3605501_3605840_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_187313024.1\|3606955_3608827_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_057943498.1\|3606396_3606786_-\|VOC-family-protein	gnl\|CDD\|319925	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.77557e-07
NZ_CP011131.1\|WP_057943501.1\|3612258_3612789_-\|signal-peptidase-II	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	2.01992e-66
NZ_CP011131.1\|WP_055910472.1\|3618816_3619086_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	2.97267e-26
NZ_CP011131.1\|WP_036113830.1\|3620880_3621201_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	5.29425e-48
NZ_CP011131.1\|WP_057943500.1\|3611165_3612116_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_CP011131.1\|WP_031371911.1\|3620607_3620868_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	7.95643e-52
NZ_CP011131.1\|WP_057943502.1\|3615765_3616800_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.74529e-149
NZ_CP011131.1\|WP_057943503.1\|3617029_3618664_-\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.43826e-151
NZ_CP011131.1\|WP_083512552.1\|3603410_3604886_-\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP011131.1\|WP_057945504.1\|3609854_3611123_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	7.16725e-23
NZ_CP011131.1\|WP_057943504.1\|3619360_3620428_-\|GTPase-ObgE	gnl\|CDD\|237047	PRK12298, obgE, GTPase CgtA; Reviewed.	0
NZ_CP011131.1\|WP_083512554.1\|3612865_3615757_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP011131.1\|WP_057945502.1\|3599492_3601208_-\|hydrogenase-maturation-protein	gnl\|CDD\|187719	cd08650, FMT_core_HypX_N, HypX protein, N-terminal hydrolase domain. The family represents the N-terminal hydrolase domain of HypX protein. HypX is involved in the maturation process of active [NiFe] hydrogenase. [NiFe] hydrogenases function in H2 metabolism in a variety of microorganisms, enabling them to use H2 as a source of reducing equivalent under aerobic and anaerobic conditions. [NiFe] hydrogenases consist of a large and a small subunit. The large subunit contains [NiFe] active site, which is synthesized as a precursor without the [NiFe] active site. This precursor then undergoes a complex post-translational maturation process that requires the presence of a number of accessory proteins. HypX has been shown to be involved in this maturation process and have been proposed to participate in the generation and transport of the CO and CN ligands. However, HypX is not present in all hydrogen-metabolizing bacteria. Furthermore, hypX deletion mutants have a reduced but detectable level of hydrogenase activity. Thus, HypX might not be a determining factor in the matur ation process. Members of this group have an N-terminal formyl transferase domain and a C-terminal enoyl-CoA hydratase/isomerase domain.	2.78921e-84
NZ_CP011131.1\|WP_083512906.1\|3602197_3602530_+\|glutaredoxin-family-protein	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	7.76544e-20
NZ_CP011131.1\|WP_187313024.1\|3606955_3608827_-\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	7.53037e-08

>NZ_CP011131.1|WP_187313024.1|3606955_3608827_-|VCBS-repeat-containing-protein
MTRQNSDGTSEYLRAPVPTLAASFLGTGMADVNHDGRQDLVITSKKSFDILLYGSDAMPAISTYTPTAGLTADVPARLIDVDGDGTMDIVTHYSVAGSDQPATPGSRLIVFKGDGQGGVAEEIALVTGAVNAGDVQKARSMAEGDFNHDGLLDLAIRFDEFDAAGQSWSYPIKVFLNDGTGGFQVPYAIDSSAQVLYLAAGDLNGDGRDDLAATGTLTPPDSKIHVFLQNEDGMLGSDVVYPVAAPAEDLEIADLDRDGRQDLLVGVTSTRSIGFYLQREGELADPVYLNIQRPIAFPWFSASSMAIGDLNGDGCTDVTVAGGAGFWALHGKGCVPPSSSDINDDRKSDLLWRDDARENLAIWRMDGADVVEGIGHAVGADWRVLATGDFQGDRKLDVIWTNGAQMQLWEGDGKGGFVGIQMRDYPSGWRVVAVGDVNGDGKADLLWRDEANISVALWVMQGAQVIDSAGYSTGPQWWVAGSGDFNGDGRLDVVWTDGLQMQLWKAATGLAFEGETMRDYPQGWELAATGDVDGDGKADLMWRYPELGHFAIWHMDGGAYVSSEGYLPGVDWRVAQTGDFTGDGRADIVWTNGSAMQLWQSQGASFIGVPMPDYPSGWSVVRR
>NZ_CP011131.1|WP_057943498.1|3606396_3606786_-|VOC-family-protein
MKRTWTIIGVADVARSFGWYQSLFGQALTAPAHDYFGQILDTDGTVLICLHRWGDHEHPPLASPERAEPGNGLILFFRVDDFEQALLRARSLAPKLEEEPHLNPSTGTQEFALRDPDGYYVMVSALAEG
>NZ_CP011131.1|WP_057943497.1|3605906_3606272_-|hypothetical-protein
MNGEIKDWAGRYKEIGFDAKLKHFSEEVFRIVEWTTLVAAVGYVGAKFSSSLLTYASYALAVLLSIYIGNRSVYIVAGLQGAAPGARTGWGWRVLLAAPITFGSIWLIMYVIGYLVKAQVG
>NZ_CP011131.1|WP_187313023.1|3605501_3605840_-|hypothetical-protein
MPIAPIRSAFIQRFRSDNRLAIIGPLSSGKRIHIGDVFEFGSVAHRAAEDAGFAPSRHHRSQLPRHPPPQSQPMRPPSYKLCVTRRLSSACIEGEPKLRGDGVFTNSPSLFH
>NZ_CP011131.1|WP_057943496.1|3605139_3605436_-|hypothetical-protein
MRVDVFVVGEDEGFVVAPSDSWLPLDEMKALGALRFGWTIDTAMAMPKLDWHAIANDIDARGYSIVAANDVGGLLARPQQHLYAIYPEQHRPDRPMAA
>NZ_CP011131.1|WP_083512552.1|3603410_3604886_-|DNA-repair-protein-RadA
MRPAAATVRFRSVAVPPAVSNLSKPPAKSAATKARTAYVCSECGADYSKWQGQCGECGAWNTLSEFVLEPAAKAGAGGVAASRRSSWAGRADAPAVTALKDVSHSEESRVSTGIGEFDRVLGGGLVHGAVVLVGGDPGIGKSTLLLQAITRMAQTLPGLYVTGEESLSQVAGRASRLGLPLDGVHALAETGVERILEHASKMKPALIVADSVQTLWTEQLAAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDAVLYFEGESGSRFRVLRAFKNRFGAVNELGVFAMSDKGLREVPNPSAIFLSGSHSPQPGSCVMVTREGTRPLLVEVQALVDASPLSNPRRVAVGMEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAVDLPLLLAVLSSLRDQPLAEQTVAFGEVGLSGEIRPVPNGEDRLKEAATHGFKRAIVPKGNAPRGGRIGEMEVIAVERLSEALDAA
>NZ_CP011131.1|WP_148648920.1|3602682_3603222_-|hypothetical-protein
MSVVLHPFAVFALLTLRTVQLLAPQATPHALIGVAAAIVVTWLFVIQRRRSGRWGTVDASHRSERPLLYAVLLGVLAICWWWMRERAAALAPGIAAVAAMLVVAALCNRWIKLSLHMASMAFAAVSLSALSPSWALAGAVLLPLLGWARVRMARHTLMEVIGGTVLGAVAALALQVWVG
>NZ_CP011131.1|WP_083512906.1|3602197_3602530_+|glutaredoxin-family-protein
MGGGGGSGGVEVTQGDYSAIYAKTGGDVVVYTLSTCPFCQQAKALLAKQNVSFVERVIDKDDVARKEADGLKINSVPVIFIGDTSMRGYNEAKLVELLNTHGKAKAKPAA
>NZ_CP011131.1|WP_148648919.1|3601554_3601767_+|hypothetical-protein
MFKRKNNRMLAMCAFCFGVAFSLSAFAATCEECWQNCFAQRVACRAAGTPASVCLINYNACGRACGCQIP
>NZ_CP011131.1|WP_057945502.1|3599492_3601208_-|hydrogenase-maturation-protein
MRILFLCTAYNGLAQRAWAELTDLGHQVSVQIASDPDTMRAAVARERPQLIVAPMLKTAIPEDVWRRHTCLIVHPGIVGDRGPSSLDWAILEGEHDWGVTVLQAAAEMDAGDIWASAGFAMRGASKSQLYRHEVTDAASRALLQAVERFETGGYAPQPLDYAAAGVRGRLRASMRAADRSLDWEMDNASLLARIRSGDSFPGARGEIAGVRCHVFGAHVEPSLRGRPGELLGRREGAICIGTRDGALWLSHLREKDGIKLPATLVLGEKRLREVAQRPLRPATSVAGRRDHAYRQIRYREVGAVGYLHFDFYNGAMSTAQCDRLRTAFLQARQRPTRAIVLMGGSDIWSNGIHLNTIQAAADPALESWRNILAMNALVREIVLTDSHLVISAMQGNSGAGGVILALAADQVWARRGAVMNPHYKSMGGLYGSEYWTYLLPRRVGETLAQELTEGLRPIGAAGAERIGLVDAAFGASAADFVAHVEQRAERAADPVGVRKALAGKRRRRAADERRKPLESYGAEELAHMYRNFFGSDRSYHEARRRFVLKCAATACEALPEQSAPRPAEVSA
>NZ_CP011131.1|WP_057945504.1|3609854_3611123_+|cation:proton-antiporter
MHPVLAACADALIFVLLSWGLWRLFGRSVPLAVLPIVIGLVLAASGWLPPELGVPSAIGDKLGWVGVLALAFSAGLETRQSHYRPQPEAEATPSVPAAGPVRARRSVSRFALSAGLALVLPFAVGTLAAYGYFNQLPGWTAPRGDGWLGAVAIGLCVAVSALPVLIGIVRELGPLHRPLTQVALAIAVVDDAVLWIGLALLLFLAEGTGLSGWGGLDALAVATMIALATLGAWLHRRYPSPPRAAVWLALPLYLAAGAWASSRLGLHALLGAYFAGAVLAPSWARQLPLERLGGYALIGLAPLFFGHSGLRIDGEVLGWASLQAALALLLVSVAAKLAALLMCPPIARLPRREALAVGALLQCKGLMEIVAATILRDKGLLSEHAFAALVTLAVLSTVLTGPLFRWMLRGRRAAAQARYEYV
>NZ_CP011131.1|WP_057943500.1|3611165_3612116_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MDVLLANPRGFCAGVDRAIEIVKRAIETLGAPIYVRHEVVHNRFVVDDLKHRGAIFVEELDEVPDGATVIFSAHGVSKAVREEAERRQLKVFDATCPLVTKVHLEVSRHCRAGRDVILIGHAGHPEVEGTMGQWRREAGLGRIYLVEDAEDVARLQVDQPENLAYTTQTTLSVDDTRSVIEALRGKYPAIQGPRHDDICYATQNRQDAVRELAAKCDLVLVVGSINSSNSNRLRELSEREGVQAYLIDGAVEIDPQWVVGRKRIGVTAGASAPEVLVRGVIERLRELGAQHVGELDGEPENMVFALPKELRLQLVG
>NZ_CP011131.1|WP_057943501.1|3612258_3612789_-|signal-peptidase-II
MTDTASKPGKNALVWLIVSVVVIALDQLSKAWVLASLPEYTPVPVIDGFWNWYRSYNTGAAFSFLSDAGGWQKYFFMVLAVAISGLLARWLARTERGDWKSALPFALVIGGAIGNVIDRMLHGHVVDFIQWYVGDYHWPSFNIADSAIVAGAIGIAIYGLFPSRADAKRRAGEGKA
>NZ_CP011131.1|WP_083512554.1|3612865_3615757_-|isoleucine--tRNA-ligase
MTNDPSQSAPGNPYKATLLLPATDFPMRGDLPKREPETLARWESEGLYQRIREKTGGRERSFVLHDGPPYANGEIHVGHAVNKVLKDIVVKSKLLAGFDAPYVPGWDCHGLPIEHKVEKEFGKVGDKLDAAAFRAKCREYATTQIDLQRRGFKRLGVTGDWDNPYRTMDFRYEADIMRSLAKIVERGHLLRGSKPVHWCFDCGSALAEAEIEYQDKESTQIDVGYVAKHARSLAALFGAAIDDDTLIAVPIWTTTPWTLPASLSVTVGPEFDYVLVDGPQRADGGRRLLVLAEALAAKALKRYGIEDVVVHGRARGVELEGQRLQHPFYAERELPVLVDSYVSAEDGTGIVHNAPGHGQEDYAVALKYGLLDHYTPAQFNPVDGRGLYLPSTPPADQHALAGVHIFKVDPIILDVLKAHDVLLASGRLKHSYPHCWRHKTPVVFRATPQWFISMDQAGLRRDALDAIGGVSWVPGWGEARIYNMIEGRPDWTISRQRYWGVPIALFFDRESGQPHPRTVEIMRQVADAVEREGADAWYAMTAEQLLGDEAGNYEKVNDILDVWFDSGTSHECVLAQRPQDGLRKPADLYLEGSDQHRGWFHSALLSGVAMDGAAPYRQVLTHGFTVDEHGKKMSKSMFNALAPEKVTDTLGADVLRLWVASTEFRNEMTVSDKILKQNADVYRRIRNTARFLLGNLSGFDPTRDLVGLDDMVALDRWIVHRAAELQDRIASAYERYDFAEIVQALSNFCSVDLGSLYLDVTKDRLYTMQENSRGRRSAQSAMYHIAEGFVRWIAPILAFTADEMWRHLPANTEHGPREDNVLFTTWYDGLALLPADAVLSDEDFKRLLGLRDSVAKTLEPMRAAGQIGAALEAEISLRCGVADQNWLAPLADELRFLFISGDVEVIADDDIKDIAVLAARTGKTKCVRCWHHRADVGVDERHPDLCGRCVSNVAGPGEDRRWF
>NZ_CP011131.1|WP_057943502.1|3615765_3616800_-|bifunctional-riboflavin-kinase/FAD-synthetase
MSRLFRDVDSGPRCPHGSVVCIGAFDGLHLGHRALVRHTVSRAHALGLPAVALSFEPLPREFFAPGAPPPRLLLPRAKAEGLLALDADQVGLLRFNKRLSGLSAEEFVERVLVRRLAAREVWVGPEFRFGKARGGDIALLRRMGESAGFSAHEIAPVHLDGERVSSTRIRETILAGDFTAAARLLGRPYAIGGHVVHGKQLGRTLGFPTANLRFGGKTPALSGIYATWVHGVGERPWPSVSSLGTRPTVAGVEPLLEAHLFDFDGDLYGRRIEVEFVAHLRAELKFPDLASLTTQMHRDAAQARELLQFDAQRRPPYASPVSQHDPRRASTSPAQAASAAEKTA
>NZ_CP011131.1|WP_057943503.1|3617029_3618664_-|murein-biosynthesis-integral-membrane-protein-MurJ
MSKGGGLLRSSVIFSAMTLISRVSGLVRDQVYAWQFGASPAMDAFFIAFRIPNFMRRISAEGSFSMAFVPVLAEYKEKQDHAAVKELVDRVTGTLTAALLAMTAVVVLAAPWVMQLFAPGWDPLSEQYRLATEMLQITFPYALFISLASLAGGILNSYEKFAIPALSPVLLNISMIAAAVCSVPLTQPFNVNPVLALAWGVFFAGILQLAFQLPALAKLGLLPRPRWGGAHQGVRKIMRLMVPTLFGSSVAQVNLLLNTALASFLIVGSVSWLYLTDRLLEFPLGMFGVAIGTVILPHLSKRHAATDTDGYSKGLDWGFRLCLLIGVPACLGLVLCAEALIAALFQYGRLHAHDTEMIRLSLMAQSTAVPAFLLVKVLAPAFYSRQDTKTPVKSAVVSVLVNLASTVLLLLAVLYLTDAGQAALAKTGGDPREALGEIPGAHACLAAAIAIAGWTNALQLAWYLRRAKVYRRQPGWGRFLRQIGVASVAMTVVVLSLLWLWQGWTVWPWWERLIKLAVVVGAGGGAYGALLWLQGIRLRDLRGH
>NZ_CP011131.1|WP_055910472.1|3618816_3619086_+|30S-ribosomal-protein-S20
MANIKSAKKRAKQTVVRNARNASQRSMLRTAVKKVLKALGENDAAGAKSAFDVAQPILDRFSSRGLIHKNKAARHKSRLTARIKALSAA
>NZ_CP011131.1|WP_057943504.1|3619360_3620428_-|GTPase-ObgE
MKLVDEAEIQVIAGNGGNGCIGFRREKYIPLGGPDGGDGGSGGSVFIVADENVNTLVDFRHQKQFRAQRGENGMGRQAYGKGGEDLVITVPVGTVVTNVETDEIIGDLTAHGDRLLVARGGKGGLGNMHFKSSVNRTPRKALPGLPGEERELKLELKLLADVGLLGFPNAGKSTLIRAVSAATPKVADYPFTTLYPNLGVVSVEAHRSFVIADIPGLIEGAADGAGLGAQFLRHLQRTRLLLHLVDIAPMEGGVEGVSPAEQVRAIENELRKHDPELLAKPRWLVLNKADLLLEEEQQAAAKAIIDELGWTDRWYLVSAISRDGTFPIMQDVMAFFDRQRADALEAASAAGEHVP
>NZ_CP011131.1|WP_031371911.1|3620607_3620868_-|50S-ribosomal-protein-L27
MAHKKGVGSTRNGRDSNPKYLGVKIYGGQAIEAGNIIVRQRGTQFHPGAGVGLGRDHTLFALVDGKVEFSTKGLKKRRTVSVVAAE
>NZ_CP011131.1|WP_036113830.1|3620880_3621201_-|50S-ribosomal-protein-L21
MYAVLVTGGKQYRVMQGETLRVELLDVEAGSEIKFDTVLMLGDGEGVKLGDALKGASVTAKVVGHGRADKVRIVKFRRRKHHRKQMGHRQHYTEIEITGIAGGDNK

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Crispr_ID: NZ_CP011131_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_14

4968542-4968616

Orphan

Consensus_repeat	Method
GACCGGCGCGGGCTTGCCGGTGGCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011131_14

>merge|NZ_CP011131|14|4968542-4968616|CRISPRCasFinder
AACCGTGGTGGGCTTGCCGGTGGCGACGGTGGCCGGCACCGAGGACGCCACCGGCGCGGGCTGTCCGGTCGCCAC

>NZ_CP011131|14|12|4968542-4968616|CRISPRCasFinder
AACCGTGGTGGGCTTGCCGGTGGCGAC	GGTGGCCGGCACCGAGGACGC
CACCGGCGCGGGCTGTCCGGTCGCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_148649037.1\|4964631_4966401_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176558
NZ_CP011131.1\|WP_148649225.1\|4980975_4981194_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379504
NZ_CP011131.1\|WP_057944383.1\|4959332_4960373_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP011131.1\|WP_057944385.1\|4961712_4962492_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_083512697.1\|4974505_4976659_-\|M4-family-metallopeptidase	unknown	unknown	gnl\|CDD\|225768
NZ_CP011131.1\|WP_057944391.1\|4971217_4972090_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP011131.1\|WP_057944382.1\|4956769_4958992_-\|carboxy-terminal-processing-peptidase	unknown	unknown	gnl\|CDD\|236873
NZ_CP011131.1\|WP_148649038.1\|4985057_4985312_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_083512694.1\|4955609_4956518_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|185333
NZ_CP011131.1\|WP_057944386.1\|4962536_4963109_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|367305
NZ_CP011131.1\|WP_057944392.1\|4972849_4974055_+\|trans-2-enoyl-CoA-reductase-family-protein	unknown	unknown	gnl\|CDD\|237460
NZ_CP011131.1\|WP_057945631.1\|4972114_4972564_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057944384.1\|4961202_4961481_-\|DUF493-family-protein	unknown	unknown	gnl\|CDD\|179161
NZ_CP011131.1\|WP_057945630.1\|4960534_4961203_-\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP011131.1\|WP_057944389.1\|4966482_4967736_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP011131.1\|WP_057944395.1\|4981542_4983801_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659
NZ_CP011131.1\|WP_057944387.1\|4963398_4964328_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057944393.1\|4977478_4980376_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226233
NZ_CP011131.1\|WP_083512695.1\|4969590_4970820_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_CP011131.1\|WP_057944396.1\|4983845_4984736_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_148649037.1\|4964631_4966401_+\|hypothetical-protein	gnl\|CDD\|176558	cd08621, PI-PLCXDc_like_2, Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although the biological function of eukaryotic PI-PLCXDs still remains unclear, it may distinct from that of typical eukaryotic PI-PLCs.	1.86386e-31
NZ_CP011131.1\|WP_148649225.1\|4980975_4981194_-\|hypothetical-protein	gnl\|CDD\|379504	pfam14206, Cys_rich_CPCC, Cysteine-rich CPCC. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 68 and 104 amino acids in length. There are six conserved cysteines and a conserved CPCC sequence motif.	9.86083e-20
NZ_CP011131.1\|WP_057944383.1\|4959332_4960373_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP011131.1\|WP_057944396.1\|4983845_4984736_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	3.43937e-05
NZ_CP011131.1\|WP_083512697.1\|4974505_4976659_-\|M4-family-metallopeptidase	gnl\|CDD\|225768	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism].	1.16488e-116
NZ_CP011131.1\|WP_057944391.1\|4971217_4972090_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.07536e-28
NZ_CP011131.1\|WP_057944382.1\|4956769_4958992_-\|carboxy-terminal-processing-peptidase	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NZ_CP011131.1\|WP_083512694.1\|4955609_4956518_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|185333	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada.	3.19311e-75
NZ_CP011131.1\|WP_057944386.1\|4962536_4963109_+\|HAD-family-hydrolase	gnl\|CDD\|367305	pfam03031, NIF, NLI interacting factor-like phosphatase. This family contains a number of NLI interacting factor isoforms and also an N-terminal regions of RNA polymerase II CTC phosphatase and FCP1 serine phosphatase. This region has been identified as the minimal phosphatase domain.	2.94816e-29
NZ_CP011131.1\|WP_057944392.1\|4972849_4974055_+\|trans-2-enoyl-CoA-reductase-family-protein	gnl\|CDD\|237460	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV.	0
NZ_CP011131.1\|WP_057944384.1\|4961202_4961481_-\|DUF493-family-protein	gnl\|CDD\|179161	PRK00907, PRK00907, hypothetical protein; Provisional.	2.79977e-56
NZ_CP011131.1\|WP_057945630.1\|4960534_4961203_-\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	1.88931e-140
NZ_CP011131.1\|WP_057944389.1\|4966482_4967736_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.06374e-145
NZ_CP011131.1\|WP_057944395.1\|4981542_4983801_-\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	5.8258e-14
NZ_CP011131.1\|WP_057944393.1\|4977478_4980376_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	3.65718e-16
NZ_CP011131.1\|WP_083512695.1\|4969590_4970820_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	3.00669e-128

>NZ_CP011131.1|WP_057944389.1|4966482_4967736_-|D-alanyl-D-alanine-carboxypeptidase
MIVRFTPRAAAFAALTSAFLVTAFAGFASAQAPAKPAATAAVTPAAALPPASDSLPVPPPPQIQGTAWVLIDAASGNILASFNPDLRVEPASITKVMTSYVIAAELKGGKVKDTDQVMMTENAWRKGGAATDGSYSGFAVNQTAPLTEMEKGMVVQSGNDAAIALAEHVAGSEDAFAALMNQYAARIGLKNSHFMNPHGLSQENHYSTAHDLALLGRALIHDFPVAYSYNKIKELKVGPITQPNRNLLLWRDNTVDGIKTGHHSKAGYCLMASALRGDQRLISVVMGSTSEAQRATDSQALLNWGFRFFETHKLYDAGKAVAKQKVWKGQSPEVQLGVAEPMLVTVPRGKYAQLKPSIDVPKSLVAPIKKGQAIGTVKVMLDGKVIAQRPLVAIAAVEEGGFFKRLWDEFWMWWESE
>NZ_CP011131.1|WP_148649037.1|4964631_4966401_+|hypothetical-protein
MKNVFFGLGLKYADGSAPSIATSRDGRIMEVHQSARDGDLAYRLGVRRKMGLLWAKQDVVYGRGLTPSIAFNGSLLMEVHKEIPDSDDLAWRTARWSDSGAGPAEFEFSAPLKYASGKMPRIAMNDRIAFAVHESPTGPAVWYNVCDIGDDASVLWRGNMALCPGIQPNIAVNDDNLAVIVYRSYSDANLYYRVGRVGLAEVAWGQAILFGSGGEPAVALTHDGEVIVVFQSSRSKTLLQRFGKIRDNAIAWAEDAVYFDDGQFPCVACAGHMAIQAHKSEHAKTLWASSSRITNRARWMQHNMNVLEDKTLPQLTTGASHDAGMYLHGPLATFGKTQNLNLYQQLRNGIRYFDLRPKWSGSTLYVHHGGVSGPPVSEIINDVERFMLEGHRELVVLKFSHYEKFTAEAYEALVVTLQEKLRDWLYRGPLQDRRLSDITMREFLAESGVVLAVCDDDYPIRFPAAGIWVYRDYNAERPQLGDLRVYDKYSNTLSYETMKTGQLEQFENYKGFCAAPNEEVPCDQFLLSWTLTPPTGVWLVSQEANRNLGEVMATQGVPNPQDLVINYLYVDYEEYSRATDVAMFMNGIE
>NZ_CP011131.1|WP_057944387.1|4963398_4964328_+|hypothetical-protein
MPASQSVALPLRGQFRSLYTQLKRARLLERTPVIFCEGDSWFSTPLAMNLLDWIVSPAPEDEERGVPLLGNGGLFFRAEHSGDHASRNPDDPKRSMFVRDNIDDIIGWYDQFDFDMILLSAGGNDFVDDFLKRTLRGQTSLSAEAAFQLVLDSGKYETVRKAYALFLQAALAVKPDTPILAHTYDHPQLIGRPGALTPGNIGVAALLKKKVGPWIGPHISAVVNADPGKTPDERRRFVRMLIDGFEKNVLRELKNDPRFGGRFDYVDLRGTLTGESQWFDEMHPTEAGFHALATKFRGAIIGKLPAAKR
>NZ_CP011131.1|WP_057944386.1|4962536_4963109_+|HAD-family-hydrolase
MLDLDETLIYASEIELDRPADFRAVGYHVYRRPHLQTFLDHALANFDVGVWTSSGRLYADAVVAALFPPQSLRFLWSSERCSISRDWTTGEYTHRKRLQKLKRHGYRLERLLAIDDTPSKHIYNYGNLVCVREYLGKETHDDELLHLMGYLDRLASQPDMRKIEKRRWRERMASAGREGEPEVARSQPRD
>NZ_CP011131.1|WP_057944385.1|4961712_4962492_+|hypothetical-protein
MASKATLNSVKPRVRGLLALALATVLLSLAVTVLRKPERDGWIALPPQPMDASDPDIRQLLTKSEMLTPRQHVGEAPADASLAQRCGEEDAEAEIVPAGQPAAAPVTDWVSPGAPSPPPLPDERYIMVIAGAPTGPSHTRRVQIDIDGDRARVLISNGDWRHAGTTPGSAADIRSEQRLSLSALAPLREAWQVPELWSANQRSGVWCAGHNGLREAFFEACVHGRYYARDRACDRNAQEPLAQLWKRVVELTPSSGPAH
>NZ_CP011131.1|WP_057944384.1|4961202_4961481_-|DUF493-family-protein
MDINSDNPDHGFQFPGTFELSAMGAAEAGLERELPRLLLQAGLEVETETIQWKHSSTGKYVSVRITFRANNREQYDLAHQVLREHPEVKWTL
>NZ_CP011131.1|WP_057945630.1|4960534_4961203_-|lipoyl(octanoyl)-transferase-LipB
MDTVAAVLGGVVAPPAAQLRDLGRQPYEPVWRAMQAFTDARDADTPDELWLVEHDPVFTLGQAGKEEHVLMPGDIPVIHVDRGGQVTYHGPGQIVLYPLLDLRRLKVGVREYVDRIEQAVIDTLAEWNIEGARKDGAPGVYVAGAKVMALGIRVRRGCTFHGLAFNIAMDLSPYQRINPCGYQGLQVTSVLDLGGPSGMEQVKPVLVAQLARQFGLTVENAL
>NZ_CP011131.1|WP_057944383.1|4959332_4960373_-|lipoyl-synthase
MTTPASKSIPLTVVSASASEGFVPAVLESTTMTPGAKQIGGDKISRSPVQFADVPVLRKPSWIRVRIPSGNSVAVLKAKLRENRLVTVCEEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPKPPDASEPANLARTVADMGLKYVVITSVDRDDLRDGGAQHFVDCIKAVREQSPRTKIEVLTPDFRGKGRMERALEILATSPPDVFNHNVETVPDLYTNVRPGADYQWSLTLLQKFKAQHPQVATKSGIMLGLGETMEQVQATLRDLRAHDVDMITIGQYLQPTPHHHPVLRYWTPEEFKELEVYGMSLGFTHVASGPLVRSSYHADRQAIDAGFAVA
>NZ_CP011131.1|WP_057944382.1|4956769_4958992_-|carboxy-terminal-processing-peptidase
MTLKNTRALTLVAGFLLTAPLALLARPDSAAAPAAAGAAISLPSAPTADQTTAAKLVYGLLSDSRYAYRPRALDDALSADMYKRYLESLDGGKQFFTAVDIARFDAYKNKLDDAIKSGDLSPAYSIFSTYKQRVDERVAYARGLLKQPANFEFNGADRYDYDRKDAPWVADTAALDALWKQSVRNDWLRLKLAGKKSDDIAKTLDKRYTNMAKGISELKGEDVFQTFVNSYANAIDPHTDYLTPKSADNFNMTMSLSLDGIGAQLQKQDDVVAIREIIPGGPAARSNLLKPGDRIVGVGQGDSGAMDDVIGWRIDDVVAKIRGAKGTKVRLDVIPAESGLDSKPNRIVLVRDKVRLEEQAAKSEVIDIPATDGVPAKRVGVIKLPGFYQDFEGRRKNANDYASATRDVAKLLVKLRADKVDGVVLDLRNNGGGSLNEAIELTGLFIDRGPVVQVRESGGRVSVEGDSDTGIAWEGPLAVLINRGSASASEIFAGAIQDYGRGLVIGETTFGKGTVQNLVDLDRWPANESARFGQVKLTIAQFFRVSGGSTQNKGVVPDIAFPVSVDATEYGESTYDNALPWTKIAAVPHTSYGNFAPLLPKLETLHTTRIGSDKEFQWWSQDVAQFREERAKKWISLNEADRRAERDREDAKRKQRQSERKQLGLTLDPLGDDSNDDGLASSERDIVKDAAREKLADKRPDPLLRESAAILADAVRLLNNDRQLSAQVLPTATRPGHWAD
>NZ_CP011131.1|WP_083512694.1|4955609_4956518_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MNAKTTPRKPESGHTADVPAARNATLGQPASIKADKLEQARILLDAGEPSLTELADAVGLSPSHLQRRFSARFGLSPAEYLAQRKLGSLRSALREGSDVSAALYDAGYGSPSRVYESGAARLGMTPARYRAGGAGEQIRWSLAKTAIGTALIATTTRGICMVELGDDPAALEAKLRSEFPQAALERVDAGRDEFLAPRVQAVAETLGGQKQSVPVDLIGTAFQKKVWDALMKIPAGQTRSYEQIARQIGSPRGARAVARACANNRVAVVVPCHRVVRGDGSLGGYRWGLPLKEKLLQRERAA
>NZ_CP011131.1|WP_083512695.1|4969590_4970820_-|lytic-murein-transglycosylase-B
MTRRHTARCALFGALTIVLAACATQAPTAPIASAPAAPKPAVPAPATPATPVVGTPALPEPVVQMPIEQARALFVRDTAAQYGIDPAYIESVLARAQIRDSIVAAMSRPAEAKPWRDYRPIFITQARIDGGKAFLAEHRAQLSRVEAATGVPAEIIVAIVGVETSFGKNTGKYSVVDALYTLAFAYPRSGDPAKLDRENRREAFFRGELGQLFALGKEEGIDITTLTGSYAGAMGWGQFMPSSYREFAVDGDNDGKRNLFTDLDDVFFSVANYFVKKGGWVRGGPVVARASRDATAQDFVPENMDPVYSLADLAARGYRPVSKVAPTQTATLLNLDGVDGPEYWFGFRNFYAITRYNISKHYGMAVYQLAEAIAGRENPLIIPAQAPIQSTTPTPVPAAPAPKPQAPRA
>NZ_CP011131.1|WP_057944391.1|4971217_4972090_+|helix-turn-helix-transcriptional-regulator
MTDRPACYPAPPAALQAGAGPDRAPLLDVLTSPVPLGLFDSPVDGRHVLCLHVGEPVPVSYRMDGHERQGVRLHGRFCVVPAGSSTRWIVSKPARSLLLRLTPSLLREISETMGLSAHAGQLAPSIHVRDAQVECIGWMMQAEDHDAYPGGRVFTDSLASALAARLLALQSRKPAASERHTHALPVWRLRHVLDYIEAHLDEDLSLAELAAVAGFSLSHFKPLFKQATGMPVHRFVLERRVERARTLLLEGKKNMGEIALDAGFSHASHMARCMRRVLGLSPSQIASSRH
>NZ_CP011131.1|WP_057945631.1|4972114_4972564_-|hypothetical-protein
MASTGTLRYSPQLGSGGHGRRDGGSTLWWLIIDCDPELGRYLRHQYLLGHRRTRSLQAPLWGPHISVIRGETPPRMEAWKRGDGGAVEFVYDPRPQQTDGYVWYPVRCEAMLDLRVALGLPREPEPALHLTIGNDKHGETDPAGTPRRA
>NZ_CP011131.1|WP_057944392.1|4972849_4974055_+|trans-2-enoyl-CoA-reductase-family-protein
MVILPKVRGFICTTTHPLGCELNVRDQIQATRALGARSDGPKKVLVIGASSGYGLAARIATAFGYGADTLGVFFEKPGTDKKPGTAGWYNSAAFDKFAKAQGLYSKSINGDAFSDEARAQVIDLIKNEMGGQVDLIVYSLASPVRKLPGTGEVKRSALKTIGEPYTSTAIDTNKDTVIQATVEPATEQEIEDTVTVMGGQDWELWIDALERADALAPGACTVAFSYIGTEITWPIYWHGALGKAKVDLDQTAQRLNTRLSKIGGGANVAVLKSVVTQASSAIPVLPLYIALVFKIMKEKGLHEGPIEQLNRMFRDRMYREDGQPAPTDEEQRLRLDDWEMREDVQAQCKALWPQVTTENLFQLTDYAGYKHEFLKLFGFERGDVDYTKDVDPEVSFDCIEL
>NZ_CP011131.1|WP_083512697.1|4974505_4976659_-|M4-family-metallopeptidase
MNRQLRMQVLFVATTLALAGTAASAAERIDLHRLNTAALQQRSAASIAAIGPSAAPAARHAGLLGLGAESKLTLIKRNAGAGVVNHRYQQSFRGVPVFGEHVVVSEDANGNVRTLFGRMVDGLAAELPNTAPKLSSAQALDLGKRAGLGNRLAALQVTNPQSKQMIFVDDNDRAHMAYVVSFNADAVGGGSPTRPFVIVDANTGAVLKQWDGLNHALVGTGPGGNQKTGQYEYGTDFGFNDVAQSGSTCTMNNTNVKTVNLNHGTSGTTAFSYTCPRNTVKTINGAFSPLNDAHYFGKVVFDMYNSYVGVAPLTFQLSMRVHYSNSYENAFWDGSAMTFGDGATTFYPLVSLDVSAHEVSHGFTEQQSGLVYSGQSGGINEAYSDIAGEAAEFYMNGTNDFLVGAQIFKGTGALRYMANPPQDGRSIGHARDYRSGMDVHYSSGVYNKAFYLLSQKAGWGTVKAFKVFAKANKDYWTPSTDFNQGACGVETAATDLGFTLADVSDAFLQVGVDCPGGPSNTPPVANFTSSVSGLSVSFTDTSTDSDGSIASRSWNFGDGTTSTAANPSKTYSTAGTYTVTLTVTDNGGSTNTKTGSVTVGGTGGSQTYTNGTDVIISDNATVESPITVSGRTGNGSATTPIAVNIVHTYKGDLKVDLVAPDGTIYNLHNRSDGSADNINQTYTRDLSSEALNGVWKLRVNDNAAFDTGKIDTWSITF
>NZ_CP011131.1|WP_057944393.1|4977478_4980376_-|winged-helix-turn-helix-domain-containing-protein
MTMATSDVWHSDARYVRVGSLCLDLHQRRIVGIGPDVDLPRRVFDLLLILLSEPNRLHPREELFDRLWPGCVVEDKNLSRSVWLLRKALGDERKHWIRTVTKAGYLFEPDHPIEAVDTLPAIEATPEEPSDAAPSLPVAMDTAQPADTIEAEPADDGEGFRPIAAVDHQRHAAIFGMASLLVLMAAMIGITGWLVTRQHTAPVPGPSAAIALIEVRDPGNADRWPSRLSYEWLAWKLGGIPDVALLTPSELAARSDAITPRIAVVFISSATPPNAPNQIVLRARFEDAGRDRNIELRGSPEQVPAMADALSRQLMQRLLPRREGVWPKLELNETAARRYEAMSTAIERRDWIATVALGNEVVRMAPRFGLARIQLAQAQSRLAQSMAAIEQMDAAQAMLRPVPEEVARRLRAQRLSMDPRRLSDAAAAYADLSRRHPGALQYAIEHARLLNAIGQPQPALDALAGLDADQAPMNLRIARALIQGDAYALGGDPDRMRAQARIARRMAGNAGQGWEIESADAALMLARADTMQYPERPPSLLYEEAAGLYETAGNATGAMTARFYALAASPPSPQADAQLDKLLATANAGGFRQLEVDILLRIAAQAQRAGATDEYRARLEQAAAVADAAGDAGARAKVGVMLAGLDMMSLRLSEAQVRMRRLDRNDVSGPFRRWYDQVQSLQYEMRGDAAGALDVALRVERELPAAAAGDAPSELRLRMACLIGEQRLALGDLAAARANLERCAASREKSSQLLAKLLDAQTEWMSGDRDTARLRLGQAAAILPMMGTGADHWNTTLHLGMLLTRLGDYPASQRWYAQIQAPVRASGYRLPMALLAIGQAENEAAQGNWSAARAHMDEARRITPASAWPLARRIEALDAVAAFAAGDYLHGRDRVVRLHQRAHELGDVYAQVELHSLLPAAEWDRCCTEPDRIALAERTGLRGATLDWLSRPRGQVTASLPVARH
>NZ_CP011131.1|WP_148649225.1|4980975_4981194_-|hypothetical-protein
MVQNLPLRCPCCGGETLDERGQYEICSVCRWEDDGQDDDDADEIRGGPNRDLSLTQARANYLQFGTSGSRAQ
>NZ_CP011131.1|WP_057944395.1|4981542_4983801_-|peptidoglycan-binding-protein
MGRFTITESVDRNHGVEHVHSFEDLEKHHPSAGREPGRQYATVNGEFEEVRNLADGRTFVKKDFILSQDTAGPVNVPAPVSGYAHRLNDAYNTVQIFDRPFNEPGAVRLGQVLHMARGTTLAEGTRVEYGEPLGRMGDTGTPGSVHAHVEVEVGQFQSYIRDIDNGTIQPGVISPMRDGVLRRGEQGAEVQRLQEALNRNGAQLPTNGVYGPQTEAAVADYQRRHNLGSVDGIAGPRTLGALGIAVAAPAATAPNAQAPAPAPVAPTPAAPPSAPSPVPAPAAPAQAQAQAPAPAQAPAPAPTQPFRDSPLSALISSGEGGYGSFNRGRAGDANGAEIDFSAMTVGEVMRRQRLHETNPGHADELFAVGKYQMVPATMREAVAKLGIDENAPFTPQLQERMFNDYLVDEKRPEVRAYITGAGGDPQLRSAQLALSQEFASVADPNTNRSYYDGDVGGNSASITAAQSAAALQQMRERYQQNVQGGMSPNEAYREVTTGDRNSTFPSVLGGSLREGRGAPDDVRELQTALNRTGANLPVTGTFDRPTTDALKAFQRANHLDDDGIAGTNTLKALGIGQPGQTRAAPEQAPVPPQPAAAPAVPAPAAPAPAVAVPAAEAPARAPAAHASPLISDPAHPDNAMYRQALSGVEKLGPQSGLNTPEKQERAAATMVYEARVSGLNRIDHVVQSPDGSRLFAVQGGLQDPAHRRVVTDTAQAASQPVEQSTRALGQDVPAAAALQHEAQQAQARAMSH
>NZ_CP011131.1|WP_057944396.1|4983845_4984736_-|hypothetical-protein
MRDRICLLLLPLVLLAACKPATSAVEPAAAPAPAAATAAATAPTIAQAAAPAAPTVPAKASAEPDIAKGFSKDMAYADLRKRLIGAGWLPLRDPKCWDNVGGEAEVCNYLPETESCSADGFCKMWFANRELGVRIQVGTYGPYDRKNTVGGGVATKVRFWGFRDLDKPAAAACPSRDFDQFLSKFAADKNLAREFTAPVVKVAELLSDGESDRAQPVYMLASSYNGFNVQYKDGAFHYVDGQGAVDAARLRLDVSKEGADKRLVRYAMNMSEGNSYLFEDSNGCWRLTEDPEAPAP
>NZ_CP011131.1|WP_148649038.1|4985057_4985312_-|hypothetical-protein
MARLIAKSVALALMVAAVGSASPVSAEPPGPCAPEGGFFWEQVDPSNPNIVNAYQCRAGIWRFLAQCHVSSCPSPDPDGPIVEA

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Crispr_ID: NZ_CP011131_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_15

5033473-5033553

Orphan

I-E

Consensus_repeat	Method
TGGATTCCCGCTTTCGCGGGAATGACGG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP011131_15

>merge|NZ_CP011131|15|5033473-5033553|CRISPRCasFinder
TGGATTCCCGCTTTCGCGGGAATGACGGACTGGTGGGATGGCGCTGAAGTCTTTGGATTCCCGCATTCGCGGGAATGACGG

>NZ_CP011131|15|13|5033473-5033553|CRISPRCasFinder
TGGATTCCCGCTTTCGCGGGAATGACGG	ACTGGTGGGATGGCGCTGAAGTCTT
TGGATTCCCGCATTCGCGGGAATGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_057944435.1\|5030343_5031276_+\|dimethyl-sulfoxide-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|113736
NZ_CP011131.1\|WP_057945638.1\|5040449_5043668_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	unknown	unknown	gnl\|CDD\|129992
NZ_CP011131.1\|WP_148649043.1\|5045041_5045629_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057944429.1\|5024247_5025216_-\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP011131.1\|WP_148649042.1\|5025305_5025890_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057944434.1\|5029413_5030262_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319873
NZ_CP011131.1\|WP_083512702.1\|5034352_5035489_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP011131.1\|WP_057944441.1\|5037619_5037985_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_083512705.1\|5043785_5044688_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NZ_CP011131.1\|WP_057944432.1\|5026257_5029158_+\|molybdopterin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|239164
NZ_CP011131.1\|WP_057944433.1\|5029219_5029417_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057944437.1\|5032360_5033302_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP011131.1\|WP_083512703.1\|5038091_5039432_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP011131.1\|WP_057944436.1\|5031493_5032168_+\|DUF481-domain-containing-protein	unknown	unknown	gnl\|CDD\|225679
NZ_CP011131.1\|WP_057944439.1\|5035500_5036193_-\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|334855
NZ_CP011131.1\|WP_057944438.1\|5033600_5034335_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP011131.1\|WP_057944428.1\|5023309_5024248_-\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132866
NZ_CP011131.1\|WP_057944431.1\|5025944_5026148_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057944440.1\|5036293_5037355_-\|TonB-family-protein	unknown	unknown	gnl\|CDD\|367555
NZ_CP011131.1\|WP_083512704.1\|5039428_5040409_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273386

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_057944435.1\|5030343_5031276_+\|dimethyl-sulfoxide-reductase-anchor-subunit	gnl\|CDD\|113736	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC). The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).	2.54977e-35
NZ_CP011131.1\|WP_057944429.1\|5024247_5025216_-\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	8.87611e-53
NZ_CP011131.1\|WP_057944434.1\|5029413_5030262_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319873	cd10551, PsrB, polysulfide reductase beta (PsrB) subunit. This family includes the beta subunit of bacterial polysulfide reductase (PsrABC), an integral membrane-bound enzyme responsible for quinone-coupled reduction of polysulfides, a process important in extreme environments such as deep-sea vents and hot springs. Polysulfide reductase contains three subunits: a catalytic subunit PsrA, an electron transfer PsrB subunit and the hydrophobic transmembrane PsrC subunit. PsrB belongs to the DMSO reductase superfamily that contains [4Fe-4S] clusters which transfer the electrons from the A subunit to the hydrophobic integral membrane C subunit via the B subunit. In Shewanella oneidensis, which has highly diverse anaerobic respiratory pathways, PsrABC is responsible for H2S generation as well as its regulation via respiration of sulfur species. PsrB transfers electrons from PsrC (serving as quinol oxidase) to the catalytic subunit PsrA for reduction of corresponding electron acceptors. It has been shown that T. thermophilus polysulfide reductase could be a key energy-conserving enzyme of the respiratory chain, using polysulfide as the terminal electron acceptor and pumping protons across the membrane.	7.02577e-73
NZ_CP011131.1\|WP_083512702.1\|5034352_5035489_-\|histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	6.23733e-49
NZ_CP011131.1\|WP_083512705.1\|5043785_5044688_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.47336e-113
NZ_CP011131.1\|WP_057944439.1\|5035500_5036193_-\|dienelactone-hydrolase-family-protein	gnl\|CDD\|334855	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This family consists of both phospholipases and carboxylesterases with broad substrate specificity, and is structurally related to alpha/beta hydrolases pfam00561.	4.42272e-48
NZ_CP011131.1\|WP_057944436.1\|5031493_5032168_+\|DUF481-domain-containing-protein	gnl\|CDD\|225679	COG3137, COG3137, Putative salt-induced outer membrane protein [Cell envelope biogenesis, outer membrane].	2.25645e-06
NZ_CP011131.1\|WP_083512703.1\|5038091_5039432_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.39508e-19
NZ_CP011131.1\|WP_057944437.1\|5032360_5033302_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	9.38528e-164
NZ_CP011131.1\|WP_083512704.1\|5039428_5040409_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273386	TIGR00999, Nickel-cobalt-cadmium_resistance_protein_NccB, Membrane Fusion Protein cluster 2 (function with RND porters). [Transport and binding proteins, Other].	2.60549e-33
NZ_CP011131.1\|WP_057944432.1\|5026257_5029158_+\|molybdopterin-oxidoreductase-family-protein	gnl\|CDD\|239164	cd02763, MopB_2, The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP011131.1\|WP_057944440.1\|5036293_5037355_-\|TonB-family-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	3.57281e-13
NZ_CP011131.1\|WP_057944438.1\|5033600_5034335_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	6.48242e-62
NZ_CP011131.1\|WP_057944428.1\|5023309_5024248_-\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132866	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.	2.39044e-62
NZ_CP011131.1\|WP_057945638.1\|5040449_5043668_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	gnl\|CDD\|129992	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family. This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0

>NZ_CP011131.1|WP_057944437.1|5032360_5033302_-|hydroxymethylbilane-synthase
MKTLRIATRKSPLALWQSEHVADRLRAAHPGLAVELVPMSTRGDEVLDRSLAAIGGKGLFLKELELAMQRGEADCAVHSLKDVPMQLEPGFALPAILERADYADGFVSNRFDSIDALPTGARVGTSSLRRQAQLRALRPDLELLDLRGNVNTRLGRLDAGEYDAIILACAGLQRLGLDARIRKRLESPYWLPAPAQGAIAIESREDDIATRELCAALDHASTRTCVEAERAMNRALHGSCHVPVAAHAWLDGEHLRLDGQVGSARDGRAVRAHGEGRGDAPECLGIEVAQKLLEQGAGEFIADSLQAPHDDAD
>NZ_CP011131.1|WP_057944436.1|5031493_5032168_+|DUF481-domain-containing-protein
MLGAIGLALLGAPLITLPTPAFGGDPILIAIASDPVQLRLHCFSTRCGDEEWKAAMAPTRRDPVIDPADLPPLRKVALPGQQRVIGGVSAPATSRESRALYSNDYRVGTRYGVQALRDGPTQIGLSFGAGYRLAPLADDGINRPGAVFRGELNLGQRISDRARWTQRVQIESGRGDTFVKQSVRLDVDVWQNWKLETDFAIRHDNRGGGGSESAESSIELIRRF
>NZ_CP011131.1|WP_057944435.1|5030343_5031276_+|dimethyl-sulfoxide-reductase-anchor-subunit
MHPAFSVIFFTTLSGAGYGLMAWIGAIAFCRYAEGSPIEPMRVFAFAMLAALALVSVGLFASTLHLGKPLRAWRAFSQWRSSWLSREGVMAIVTYVPALGLLLGAVRESGAAMPMLLSAGVSVCALITVVCTAMIYASLKPIPAWRHRLVVPAYLSFALLSGAALLPVLASVRFGGSVGIVAVIVLAPLTAALKLAYWRAIDRTPLPVSRGDAVGLPDRELSVFERPHTEDNYLTREMGYVLARKHARKLRLLALTMFAAAPLALALLALAVPALSWPAMALAALCVLTGAVVERWLFFAQAKHVVTLYY
>NZ_CP011131.1|WP_057944434.1|5029413_5030262_+|4Fe-4S-dicluster-domain-containing-protein
MTGLPPPSKKKLGLVIDLDTCVGCHACAVSCKEWNAGGFAAPLTDEQPYGKEPSGVWFNRVHSYEVAAQAAPVESLPMADPVRSCGTASAAAPACGSANAAPQPAMTLHFPRSCLHCEQPACVTVCPTGASYKRAEDGIVLVDEDKCIGCKLCSWACPYGAREYSPVEGVMKKCTLCIDRIYNENLEESERQPACVQACPTRARHFGDLGDPESAVSKLVAERGGVDLMASLGYQPTNKYLPPRPRRDGGGNGDGDNAPAAETLDSKALPPVLRWLDKVLSR
>NZ_CP011131.1|WP_057944433.1|5029219_5029417_+|hypothetical-protein
MKTVRVIAGVVCIVLGLSLSALLAMVGLGNGTGAPAAISLMPGVAVGLTVLAAGVWMVYTGLKKT
>NZ_CP011131.1|WP_057944432.1|5026257_5029158_+|molybdopterin-oxidoreductase-family-protein
MREHAPTEPAIDLSPSPGDEVKTTTCYMCACRCGIKVWLADGNIRYIQGNPDHPVNQGVLCAKGSAGIMQHYSPARLSKPLLRVGERGAGEFREIEWEQALEIAAGWLAPIRERNPDELAFFTGRDQSQALTGWWAQQFGTVNYAAHGGFCSVNMAAGGLYTLGGSFWEFGEPDWEHSRYLMLWGVAEDHDSNPIKLGLGKLKARGAKIVAVNPVRSGYGAIADEWIGIRPGTDGLFAFALIHELLKADRIDLEFLVRYANAHWLVIRNPGGADDGLFARDEEGRALCWVRGPHPGPHLADAIDISPAVVGEYTLPDGRRVVPVFHLLAERYLDPQFSPDAVSERCGIPADTIRRIARELAQAAFDNPVKLPIAWVDAHGREHSEMIGRPVSMHAMRGISAHSNGFHTCRALHLLQLLLGAVDTPGSFRYQPPFPKPLPPPNRPGKQRQANGALDAAPLGFVHGPEDLVVDEHGRPRRIDHAFSWAYPLSAHGMMHTVIRNAWAGDPYKIDTLMMFMANMSWNSAMNTAQTIGWLTDRGSDGEYRIPRIIYADAYASEMTAYADLVLPDTTYLERFDAISLLDRPISDADSACDAIRHPIVDAASQRLGNDQKPRDVRGFQSVLLDIGARLGLPGMVLEDGSPRYRDYADYIVRHERAPGVGLLAGWRGEHGELEAKGPPNPEQLQRYIEHGGFWRSHVPEAARYYKMANRAYLDWAQKMGFLGHAEAITLQLYSETLQKFRLAAQGHGPRQPPDEHRQRVATYFDPLPIWYEPFEGAQVEDSATRFPLSAVTQRPMFMYHAWGSQNAWLRQITTRNYLYLHPDTGARFGLIDADWIAVESHHGRIVVQARFAANVQPDTVWTWNAIGKRRGAWRLSKDAPEASKGFLLNHLISDITPKGDYANADPVTGQAAWFDLRVTLRKAEPDESTASERAQTQSQPQFAPLAFEPADNRPLRYGAQFRKNR
>NZ_CP011131.1|WP_057944431.1|5025944_5026148_-|hypothetical-protein
MMLLLAFAYYGGPIWVAGLLAWVGYAQRARRPGFNRWYAAAVACAVLGAAALCFWHLWAGAMRGVGG
>NZ_CP011131.1|WP_148649042.1|5025305_5025890_+|hypothetical-protein
MIKTSLSATLTPAVLLLGLCASGLAWAGPKEEVVAAVDKFLAAKTYHASMSMGPGPGTETDFVAPDRIRIKMGAMGEQIMIGDTAYLTIQGKTRKQPSPGGGVAATRSRDKILGNQQTLKVTALGAETIGGVATKKYKVENSQPKSSSTFWVAANGYPVQAVNVAEVSGKTYTSTLKYSRFNDPSIKIEAPAVK
>NZ_CP011131.1|WP_057944429.1|5024247_5025216_-|YafY-family-transcriptional-regulator
MERIERIHALHRILTAARYPVTVQRLQEDLECSRATVYRDLAYLRDYLMAPVVGNGEAGFRYDTSEGDRFELPGLWLSSEELHSLLAAQQLLMRSGGGVLSNALAPLQQRIEKLLDEHAGGRRLPVERVRVIPHRTRRLDETAFRCVATAVLDRKQLTFEYRARSTDERTRRSVSPQRLTHYRENWYLDAWDNERDALRSFSVDRISAAKVGEAIARDVADEELDQHLASSYGIFSGAPKGWATIVFSAKAARWVADEHWHSQQQGRFLPDGRYELKVPYSAGRELLMDVMHYGSDAEIVEPVVLREQAKSMLELALSNYGH
>NZ_CP011131.1|WP_057944428.1|5023309_5024248_-|patatin-like-phospholipase-family-protein
MAGADAPHIQSGEPVALVLGAGGARGLAQIGVIEALQERGLRIVAVAGSSSGALVGGLFAAGKMDIYRDWLYSMSRTDMLRLLDPVFGQPALFRGERLMHALRELAGEPRIEDLAVDFTAVAVDLVRQREVWLREGDLWDAVRASIAIPGVFTPYELHGRELVDGGLLAPLPITATRLSDAQRLIAVDMHGWPDQPPGGLAHHNGADKAQALQVASIKPPSLLARWFRRSYQPEASAPGEEAPHELSFSELMARSLDMMQAQIARVQLALDPPELVIRIPRDACQFYEFWRAKELIALGREEADKALDKAGY
>NZ_CP011131.1|WP_057944438.1|5033600_5034335_-|response-regulator-transcription-factor
MRVVIADDEPLARERLRGLLALRPDVEVVAEAVDGQHALHACAEHRPDLVLLDIAMPGIDGLEAARHLAAFDPRPAVVFCTAYDAHALSAFDAEAIDYLVKPVRAERLDAALERVRTFAAGRERHEGGETAPGQVRSHLCARLRGSLRLIPIEDVHYLHAEEKYVIVHHARGEDLIEESLKSLEDEFGERFVRIHRNCLVARHEIVELKRNAEGHVQAVLRHGKQPLEVSRRCVAALRETLKHL
>NZ_CP011131.1|WP_083512702.1|5034352_5035489_-|histidine-kinase
MAAPPSQTGKHSNKGPAKPPAKPPSGRLSGHSDEVEPWLPDLCRLPRLVVMLSMAELIVIVLALAPDGSDWDLGRFVSSSAFALWLALAISVLLCVSRKQLSRLPPGVGGFIATATAAAIAAAVAGVTHSIDTVTGVGLVPAGTSFWRFVTGTAAIAILAVGVVLRYLYVNDSWKAQVRANARAEVDALQARIKPHFLFNSMNTIAGLVRSDPEVAERAVLDLSDLFRAALGASKSDSSLAEEVELAERYLAIEQLRLRERLRVVWRKREPLPWKMPLPRLVLQPLVENAVLHGISRLQGGGEIEIELTQLSDHLLLRIRNPAPAPADGRAGSRHAQHSIGQRLRYAYGPTARMTAGWNGGYYLCELHVPTGVEAQSR
>NZ_CP011131.1|WP_057944439.1|5035500_5036193_-|dienelactone-hydrolase-family-protein
MDTVAPALLETVELETRPLPSWSVLWLHGLGADGNDFAPIVPELVRKDWPALRFVFPHAPVRAVTINNGLRMRAWYDIRDFQDLANRADETGVDESVQQVEALIAREAERGIPAERVLLAGFSQGGAITLATALRRKQALGGLIALSTYLPMADRLMREAAAVAHTQPLFMAHGQHDPVVPYRGGEMAAARLRTLGFKIDWHAYPMAHQVCAEEIAALGDWMSQRFAAKT
>NZ_CP011131.1|WP_057944440.1|5036293_5037355_-|TonB-family-protein
MKVVTKPARIVAAGLWACGGMTIRASARVVFGASVGLSVLLAGCGSGESSKAQPAASAQAEAAEAAAPLPPALTEFDADGLRARAAQALREQRIHTPAGDSAVDYYLALRDKEAGQIDVISALSELQPYVVIAGEQALLDDDLAESRRLQDLLARMDPQAPALPRLREGLRAAGAARERKAREETERLMAERSDASAARAVSAQRERTAAASTAMKAAAAASAQAADEAAAQASTPASTPAAPVPAPAVAAPPPVAASASARSAPAAKPMPRLIADASPRYPLSALNRRIEGSVEISFTIQPDGRTSAPRLVSSQPAGVFDEAALAAVSRLRFEASGQAHAARRTLNFKLPSR
>NZ_CP011131.1|WP_057944441.1|5037619_5037985_+|hypothetical-protein
MPGPSALATASRYLVFAVLIAVMLVKPVLAFASEAGELTPSAATALQHDSDRHADGQPQHDPDGCGDSRWHLSHCCAMQAALLPRIDLGLLAPATAQALPAHSTAFVPTPTVVPFRPPISA
>NZ_CP011131.1|WP_083512703.1|5038091_5039432_+|TolC-family-protein
MRLRPAALAALTAALCFSAQARPPLASASPPGTLAAANAPAAPRAGSVFTLDDAYARIGDSHPDLRLFGDQRSVLQAERDIAAQKPALVAGLAVDNVLGTGAVSGIGGAEITLSLASVFERGGKLDARRAFAQSRIDALAVDREGRRLDLLAETARRYLAIVAAQRRIELAQFDIAQRKRSVAAARQRLEAGASPESGLLTAQAAQARAELERSRAEQSLLAARQHLAALWGERDPGFATVAGDPYALAPIQDTAALASLLERTPELARFNDARRIGEARVRLAQSQATPDLSWQLGVRRLQDGSDMALIGSVAMPLGARDRAEPGIRGAQAELAVLETEREAKGMSLYSTLVEAHGRYRVGALEVARLKDDVLPRLERAEKAAEYAYRAGAISYLELALLQAESVAVRKQRLDTALDAQLALIEIQRLTGESFLAASPIPAGARP
>NZ_CP011131.1|WP_083512704.1|5039428_5040409_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKPELLIAAGLLALSLSACGGADKTPQQTEAAAKKIEGDHAEQGGEHGEGEEEKAESTVIRNEIARRSGISVAPAGPGTVADEHEVQGLITPLEGHVARITARYPGPVRSLRANVGDRVSAGQTLATIDSNLSLTTYSIAAPISGVVLARNASVGEVAVEGTALFEIADLSTLWVDLHVFGADASHLRPGLPVTVMRMGEDNGVDTTLDRILPGTATASQSTVARASIKNADGLWRPGSAVRARVTVEQQPVALAVPLTALQRMDDFEVVFVREGERYSARPVKLGRRDAKRVEVLSGLKAGEQVVVEQSFLIKADIEKAGASHEH
>NZ_CP011131.1|WP_057945638.1|5040449_5043668_+|CusA/CzcA-family-heavy-metal-efflux-RND-transporter
MLERILRFAIRHRWLMLALTLALIAVGVWSFGKLPIDATPDITNVQVQINTQAPGYSPLESEQRVTFPIETALAGLPKLDYTRSLSRYGLSQVTVVFKDGTDLYFARQQVAERLQQVKSQIPAGLEPELGPTATGLGEIFMYTVDADPKARKPDGSAYTATDLRTLQDWVIRPQLRNTPGVTEVNTIGGYARQIHITPDPARLRALNLTQRDVVAALAANNQNVGAGYIERNGEQFLVRVPGQIAKTEAIGEIVLDRRDGVPIRVRDVAQVGEGPELRSGAATQNGHEVVLGTVFMLVGSNSRDVSQAAASKLEAANASLPKGVSANAVYDRTSLVDRTIATVSKNLVEGALLVVAVLFLLLGNFRAALITALVIPLAMLFTITGMVRGGVSGNLMSLGALDFGLIVDGAVIIIENCLRRFGEQQHLLGRQMSDEERHDLTASATAEVIRPSLFGLGIITAVYLPIFALSGIEGKMFHPMAITVVLALTGAMLLSLTFVPAAVAIFLGGKVAEKENRAMAWIKRRYEPALAWALRSRAIVVAGTAALVIVSGFLATRMGTEFVPSLDEGDVAVQAMRIPGTSLTQSVTMQKTMEQAFMAMPEVERVFSKIGTSEVASDPMPPSVADTFLMLKPRERWPNPGKPKAALMEEIQAIAGTLPGSNFEFTQPIQMRTNELISGVRADVAVKVYGDDLQQLLKLAQRIEAVAKRVPGAADIKTEQVTGLPMLSIEPDPRALAVYGLNPVAVQDAVATAVGGEVAGQLFEGDRRFDLVVRLPEGLRQDPAALADLPIPLPAASGDRDESSRDATWLAGAPRTVPLREVAKIKSVLGPNQINRENGKRRIVVTANVRDRDLGGFVGELRQRIDAEVKLPEGYWIGYGGTFEQLISASQRLAIVVPVTLVLIFALLFMAFGSAKDAAIVFSGVPLALTGGVIALALRGIPLSISAGVGFIALSGVAVLNGLVMIAFIRKLREQGDPLDNAIVDGALGRLRPVLMTALVASLGFIPMAFNVGAGSEVQRPLATVVIGGIVSSTLLTLLVLPVLYRWLHRNDAQERERESAPQSPPQAAPAH
>NZ_CP011131.1|WP_083512705.1|5043785_5044688_+|cation-transporter
MGSGHDHGTTAIRHERPLWWALGLTGGFLIAEVIGAFLTNSLALLSDAAHMGTDTLALMIALTAVRLSRKPADAKRSFGYVRMEAMGAMANGLMLFAVAAYILWEAVGRFSQPPQIATTGMLVIASLGLAINLIAMRLLSAGSGESLNMKGAYLEVWSDMLGSVAVIAGAIVIRFTGWTVVDPILAVLIGLWVLPRTWTLLREAGNVLMEGVPRGIDLDAVRALLSSAEGVSDVHDLHVWSLGSSTPAMTAHLVVEPGVDGEALRRELAKLLDERYGIGHCTLQIEAAACGDEACDSPHP
>NZ_CP011131.1|WP_148649043.1|5045041_5045629_-|hypothetical-protein
MRALAFALPALALIPILAVFNAGSKPAPPTDARAVAAFATVQKVFQHPRCQNCHIPGDSPLQFDAGLPHAMGVVRGPEGKGAAGLPCSTCHGEANLPASYGANAPPGAPHWQLPPPQHKMAWIGLPAPKLCAMIKDKSSNGGRDFAALIKHVSEDKLVLWGWAPGGAREPVPVPHPQFVEAFKTWADAGGPCPRQ

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Crispr_ID: NZ_CP011131_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011131_16

6022264-6022368

Orphan

Consensus_repeat	Method
CCCGCGTTCGCGGGAATGACGGCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011131_16

>merge|NZ_CP011131|16|6022264-6022368|CRISPRCasFinder
CCCGCGTTCGCGGGAATGACGGCCTGGAAGGATGACGCTGAAGACTCTGGATGTTCGGCTCCGCCGAAGTAAAGCGAAGCCCGCCTTCGCGGGAATGACGGCCTG

>NZ_CP011131|16|14|6022264-6022368|CRISPRCasFinder
CCCGCGTTCGCGGGAATGACGGCCTG	GAAGGATGACGCTGAAGACTCTGGATGTTCGGCTCCGCCGAAGTAAAGCGAAG
CCCGCCTTCGCGGGAATGACGGCCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011131.1\|WP_057945130.1\|6019114_6020131_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316740
NZ_CP011131.1\|WP_187313103.1\|6030108_6031143_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223715
NZ_CP011131.1\|WP_057945720.1\|6031963_6034510_-\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|273901
NZ_CP011131.1\|WP_057945129.1\|6018724_6019024_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057945131.1\|6022393_6022645_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|259955
NZ_CP011131.1\|WP_083512826.1\|6022832_6023822_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP011131.1\|WP_083512823.1\|6016005_6016446_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NZ_CP011131.1\|WP_057945134.1\|6027721_6028687_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP011131.1\|WP_057945126.1\|6015163_6015871_+\|UPF0149-family-protein	unknown	unknown	gnl\|CDD\|274071
NZ_CP011131.1\|WP_148649240.1\|6023940_6024849_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|227135
NZ_CP011131.1\|WP_148649152.1\|6016410_6016623_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_057945137.1\|6031378_6031744_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP011131.1\|WP_057945133.1\|6025894_6027658_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011131.1\|WP_083512822.1\|6014693_6015092_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234985
NZ_CP011131.1\|WP_057945135.1\|6028831_6029788_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381307
NZ_CP011131.1\|WP_057945132.1\|6025005_6025539_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211334
NZ_CP011131.1\|WP_057945124.1\|6013903_6014416_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP011131.1\|WP_057945718.1\|6020397_6022128_+\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	unknown	unknown	gnl\|CDD\|368840
NZ_CP011131.1\|WP_187313102.1\|6016619_6017078_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379193
NZ_CP011131.1\|WP_057945128.1\|6017297_6018626_+\|isocitrate-dehydrogenase-(NADP(+))	unknown	unknown	gnl\|CDD\|180792

Protein	Function_ID	Function_description	E-value
NZ_CP011131.1\|WP_057945130.1\|6019114_6020131_-\|hypothetical-protein	gnl\|CDD\|316740	pfam14247, DUF4344, Putative metallopeptidase. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 247 and 291 amino acids in length. There is a conserved EED sequence motif. This is a putative metallopeptidase.	2.97975e-63
NZ_CP011131.1\|WP_187313103.1\|6030108_6031143_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.49256e-37
NZ_CP011131.1\|WP_057945131.1\|6022393_6022645_-\|hypothetical-protein	gnl\|CDD\|259955	cd13888, CuRO_3_McoP_like, The third cupredoxin domain of multicopper oxidase McoP and similar proteins. This subfamily includes archaeal and bacterial multicopper oxidases (MCOs), represented by the extremely thermostable McoP from the hyperthermophilic archaeon Pyrobaculum aerophilum. McoP is an efficient metallo-oxidase that catalyzes the oxidation of cuprous and ferrous ions. It is noteworthy that McoP has three-fold higher catalytic efficiency when using nitrous oxide as electron acceptor than when using dioxygen, the typical oxidizing substrate of multicopper oxidases. McoP may function as a novel archaeal nitrous oxide reductase that is probably involved in the denitrification pathway in archaea. Members of this subfamily contain three cupredoxin domain repeats. The copper ions are bound in several sites; Type 1, Type 2, and/or Type 3. The ensemble of types 2 and 3 copper is called a trinuclear cluster. MCOs oxidize their substrate by accepting electrons at a mononuclear copper center and transferring them to the active site trinuclear copper center. The cupredoxin domain 3 of 3-domain MCOs contains the Type 1 (T1) copper binding site and part the trinuclear copper binding site, which is located at the interface of domains 1 and 3.	0.00473762
NZ_CP011131.1\|WP_083512826.1\|6022832_6023822_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.55672e-70
NZ_CP011131.1\|WP_083512823.1\|6016005_6016446_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	1.37675e-09
NZ_CP011131.1\|WP_057945134.1\|6027721_6028687_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.11525e-15
NZ_CP011131.1\|WP_057945126.1\|6015163_6015871_+\|UPF0149-family-protein	gnl\|CDD\|274071	TIGR02292, Hypothetical_protein_yecA., yecA family protein. This family resembles pfam03695 (version pfam03695.3), uncharacterised protein family UPF0149, but is broader in scope and includes additional proteins. It includes E. coli proteins YgfB and YecA. The function of this family of proteins is unknown. The crystal structure is known for the member from Haemophilus influenzae (Ygfb, HI0817). [Unknown function, General].	3.55429e-23
NZ_CP011131.1\|WP_148649240.1\|6023940_6024849_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|227135	COG4798, COG4798, Predicted methyltransferase [General function prediction only].	4.02575e-55
NZ_CP011131.1\|WP_057945135.1\|6028831_6029788_-\|aldo/keto-reductase	gnl\|CDD\|381307	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR). Haloferax volcanii aldo-keto reductase is a founding member of aldo-keto reductase family 9 member C1 (AKR9C1).	3.18553e-170
NZ_CP011131.1\|WP_057945137.1\|6031378_6031744_-\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.00747569
NZ_CP011131.1\|WP_083512822.1\|6014693_6015092_-\|hypothetical-protein	gnl\|CDD\|234985	PRK01842, PRK01842, hypothetical protein; Provisional.	2.79151e-51
NZ_CP011131.1\|WP_057945720.1\|6031963_6034510_-\|ATP-dependent-helicase-HrpB	gnl\|CDD\|273901	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP011131.1\|WP_057945132.1\|6025005_6025539_+\|pseudouridine-synthase	gnl\|CDD\|211334	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.	1.14114e-88
NZ_CP011131.1\|WP_057945124.1\|6013903_6014416_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	4.50419e-06
NZ_CP011131.1\|WP_057945718.1\|6020397_6022128_+\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	gnl\|CDD\|368840	pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase (AceK). This family consists of several bacterial isocitrate dehydrogenase kinase/phosphatase (AceK) proteins (EC:2.7.1.116).	0
NZ_CP011131.1\|WP_187313102.1\|6016619_6017078_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379193	pfam13451, zf-trcl, Probable zinc-ribbon domain. This is a probable zinc-binding domain with two CxxC sequence motifs, found in various families of bacteria.	1.49137e-05
NZ_CP011131.1\|WP_057945128.1\|6017297_6018626_+\|isocitrate-dehydrogenase-(NADP(+))	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0

>NZ_CP011131.1|WP_057945718.1|6020397_6022128_+|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase
MSADSAALAQAVAVAGQIRDAFADYHARFAAITRRAQGRFERCDWNGARDDAVERIELYDRCIAEASDALETRLGEQARDRGFWSQVHTAYAQAVAPLLDGELYKTFFNTLTRRFFKTRGVDPAMEFVALDIEPTDAITHPVARHSYAVSEERLVETFMRVLDDYPFAVPYAHRTRCAAGIAVRLQEDLQHWGPHPVRAVELLNTVFYREQRAYLIGRVFGERAFSPCVIALVNEDGALKVDAVLTLRSEVVQLFSYSRSYFHADLGTVGDAVVFLRTLLPGKPIDELYTVLGRAKQGKTERYRTFFRQFAAQPGERLVRADGERGMVMAVFTLPSYPLVFKIIRDRFAYPKEVAREEVEAKYSLVFHHDRVGRLVDAQPFRFLRFPRSRFEPDLLDELLSTCAGSISQDGDDLVLHLCYVERRLRPLNLYVREQPAEAARAAVIDYGQAIRDLALSNIFPGDLLLKNFGVSRHGRAIFYDYDELCLVTDCRFRAVPAPRNHEEEMESGAWFYAHGNDVFPEQFPRFLGLSPPLLGALMHAHGDIFRMQWWQQVQAGLASGQRNDVAPYPSQRRLP
>NZ_CP011131.1|WP_057945130.1|6019114_6020131_-|hypothetical-protein
MLQKIIIGILAAAVISVCSIWGYTVWQRTQAPPPVAVAASPKPAEAAKADTAIAPVAAPLPFEQADGTHFTYNYLPPRDPDLLAMYDMARKIDVLRQLPEIDQLDGWLMLPRPINYVAAQCDTVNIFYARDKGDIVLCYEMLELLVRQGLTIAQANGGSARDQLDYLLANLRFLLLHETGHALVDLLDLPATGREEDAVDQLATTLMLSFVSTDESRGDIARKLQLASNFFLITDDGQHDMARYADEHSVGAQRFFNLQCMVYGSDPDKYPSIVASGRLPAARAQRCAEESRRITRNWMRLIGPHIAPRHRLSAQEEQARIEEIERKQAQNRNAADAR
>NZ_CP011131.1|WP_057945129.1|6018724_6019024_-|hypothetical-protein
MNYRSIVFAAAALVLAACSQPAPPSAEDARATFLRACERRLQNRTNLSAQQIASFCPCFANAASAKHDMNRLNAEMESGSNDVFKSTLQAEFDQCKRTM
>NZ_CP011131.1|WP_057945128.1|6017297_6018626_+|isocitrate-dehydrogenase-(NADP(+))
MTEFVATPPAGGAKITKTPTGLNVPDRPIIPFIEGDGTGPDIWRASVRVLDAAVAKAYGGSKKIEWLEVYAGEKANNTYGTWLPDGTVQACRDYLVSIKGPLTTPVGGGIRSLNVALRQMLDLYVCLRPVRWFEGVPSPVKKPGDVDMVIFRENTEDIYAGIEWAGGSADSQKVLDFLQKEFPQAFDKIRFGTAEKNAAWLKEMEAVGAPARELPVEVGIGIKPVSRLGTERLVHSAIAYAIENKRKSVTLVHKGNIMKYTEGGFRDWGYQVARDYFGAVELDGGPWHVIPEGKPGAGLIIKDAIADAFLQQILLRPKEYDVSATLNLNGDYLSDALAAQVGGIGIAPGANINYVTGHAVFEATHGTAPKYADLDKVNPGSVILSGEMMLRYLGWTEAADAIIAAMDKAIASKRVTYDFARLMDGATEVKCSEFADEIIKHL
>NZ_CP011131.1|WP_187313102.1|6016619_6017078_-|zinc-ribbon-domain-containing-protein
MAGRNAKIAVDMRNWSDESRRSMAAEFAGPVYVDQALSCRRCDREFVFSAQRQKEIFEVRKAYIWQRPVLCPQCWPLRLQWVTELKSLRARWSSQRAVMKRDVEALWRWRRVLDELTACGLRRDKAQIAMLDKLLIRAAADSDDSGLTKSSV
>NZ_CP011131.1|WP_148649152.1|6016410_6016623_-|hypothetical-protein
MITAPVLPIGIAIIVFGANSILTGRAMFDWSFDGGDNDSSEGEEVFGWKAVLVGALTIALGVVLIVHLIL
>NZ_CP011131.1|WP_083512823.1|6016005_6016446_+|YkgJ-family-cysteine-cluster-protein
MSPAIHPCLSCGACCAHFRVAFHWSETDACEGGITPSALTETLDPHRVVMRGTYGGTAVRCEQLRGDIGVDAHCGVYALRPSPCHALKPAWEDGTASPQCDKARVAHGMEPLTPQVWYALRGEAADALIIAAAGALQNQMHDQDNP
>NZ_CP011131.1|WP_057945126.1|6015163_6015871_+|UPF0149-family-protein
MKAPAYLDDDQIERLADLLDQRAVPYKGFNLEALDGYLSALAVGPQQPAPEQWQPPVWGGKEPRWNDEAEAAQVQALLLGHWNMVSARVRYSDDDLPDHLAPLLWLPEEPDDEQPDELDVGRDWAFGFFRGVELNEAAWDKWLDDNDWIDEIFGLFDRLASGEVLAEDPTAPATPISYRERLEIVASLPGMLADLHHHRIEALTPREPLRRAETPDRNEPCPCGSGKKYKKCHGA
>NZ_CP011131.1|WP_083512822.1|6014693_6015092_-|hypothetical-protein
MSTRTDPPAACPCDPSRRYAACCGRLHGGAAAESAEALMRSRYSAYVLGDADYLRASWHPDTCPAQLDFDPAVRWLGLQVKRHRPEGDAAVVEFVARYRVGGGSAVRLHEVSRFARVEGRWLYVDGEFPSAK
>NZ_CP011131.1|WP_057945124.1|6013903_6014416_+|hypothetical-protein
MLIRNRTHYAVAAALVAALALAGCKKKEEPAPTPPPAAETPAPAPAPAEPAPAPAATASVASVDLGSAIGADKKVTAAATSFKPKDTIYASISTSTSDPAATVPTKLGAKWTFQDGQTVHEEPVADVQATNGGVTAFQINSPKGFPEGKYKVEITQDGNVVQTKEFDVKK
>NZ_CP011131.1|WP_057945131.1|6022393_6022645_-|hypothetical-protein
MNIYKNLMFLHGHFADPRDADDETAAPVAARTPVQVPARVAAGAVSSRAQGSRARASGWRTWLQLWPRETAKVEVDCDARGCA
>NZ_CP011131.1|WP_083512826.1|6022832_6023822_+|LysR-family-transcriptional-regulator
MNRPPLHALLGFATAARTSNLTRAAEQMHLTVSALSHQIRTLEERLGRRLFERGPRGVTLTADGERLLSVVAPHLDALDHALRPYSPRRDDVLTLSLMASMASSWLVPRLGSFVALYPQLELNLFSSAALVDFDREPGIDAAMRGGYGRWPGLVIEHLFDETLVPVASPALVERMGGLPAQDDLHRWPLLGDLSTYWQDWFDRYGGGKRPTRFVAHFDDSETMHRAAVEGLGVALGRLARTRLLIRSGQLVPLSQGRLKIDWGHYLVYPQRSVDHGGLESFRTWLHQQARAYIDQMESDLATREVASTDDGACGLPDAPAAAKPRRKRR
>NZ_CP011131.1|WP_148649240.1|6023940_6024849_+|methyltransferase-domain-containing-protein
MLAALLPSLAVTAYAQEKTEPADAAKPAAEAAKPAAKTAKSSKKSAPAAREAAGSSALKTVIAGSWRDPKNVARDGYRHPLETLTFFGLRPDQTVVEITPGGGWYSEILAPYLADKGRYVAAVVDPDTQTQDGSRKYYAKAKTSLEQKFAASPAQYGKVAIAAYDAYKPAFGTADSADLVLTFRNVHNWRSAGQAEVMFKGFYEVLKPGGVLGVVEHRAKTDVPADDKSGYVGTAQVIALAEAAGFRLDGKSEINANPRDTKDYPNGVWTLPPVNKHDAADDAKYQAIGESDRMTLRFRKPR
>NZ_CP011131.1|WP_057945132.1|6025005_6025539_+|pseudouridine-synthase
MLIALNKPYGVLSQFTDRSVPPKPTLAGFGLPKNVYAAGRLDHDSEGLLLLTDDGDLAHRLTDPKHKQPKTYWVQVEGEPREDQLQALRRGVELNDGPTLPAQAERIDPPALWPRDPPVRFRKTVPDAWLAITIGEGRNRQVRRMTAAVGLPTLRLVRAAVGPYRLGDLQPGQWRPL
>NZ_CP011131.1|WP_057945133.1|6025894_6027658_+|hypothetical-protein
MSTLRSLSLGISAVLSVGAAYLLFPATADSATVRAAAEEPSDFERIPPVVEDIHITATGQDPDANALLQLTYAKGQDLPAELTFNVGDKPVLLKRDEQNPQLYAATIGFDFDGFVKEQEQRQKLAEQKATVPLFDGREFLGEEAVQFLEPTKLREQIASRVAIRIPGVVLPWPSLAVRPERSLMVTDPLVVEDPTRTFDACTNTGNPNGAWTFNRLMTNMANQPLTGVDPSDFVENWMRTWGTSTTINTFPVPARSAVISQVLNTWPRLSTGKLDLTRSPMRLLAIVNRVDLRTNTAYGGGSAGEGRFVFGVIRRNSTGTCTVHRFTVILEYGVPISTCPAVRSYAQQWGNLGTLVLGSPTYNASLQAITDQFTNANAAPNKPNRSAINQIRTNEFLQNPWELREFNILRGNTQLSIVPAKQTPHHTHNNTALLANYINTNQAQILAGTYSVPLSYLGTPFLTGSVLNPSPQQAWRAPGIANNNARNKFSVNTCDACHGRETLTTSFLHVAPRASGAQAVLSKFLLGNGTLAAPTTFTMADPIVAATPRTYGDLLRRQGDLSTLQSSLCRTSGVFQEAHFQPLLATD
>NZ_CP011131.1|WP_057945134.1|6027721_6028687_-|EamA-family-transporter
MNAATSAPASATASNARRAGMAMAAAGAILFSAKAILAKLQYRYGVDSLQVLALRMAFSLPLFAALGIRETHRARARKALPSRRDLGWIVILGVLGYYLSSLLDFWGLEYVPVSLERLILFLNPTIVLLIGLFAFKRKVAGKEWIALAVSYAGVVLVMVENLRVQGDHVLFGSALVLGAAISYALYLAMSGELIKRLGTMQLVAYAMIVSTIAVMTHYLIARDPAALFGLPWQVYALAAANAVFCTFLPVTFTMAAVARLGAGTAAQFSVIGPVSLVFLGAWVLGEKITLIQLIGTAVVLGGVVLLSRPGANSVPLPSSSK
>NZ_CP011131.1|WP_057945135.1|6028831_6029788_-|aldo/keto-reductase
MNPRPLGRSSLYVAPLAFGGNVFGWSADQAASFALLDAFTEAGFSLVDTADVYSAWVPGNQGGESETLIGRWLAQGGGRRERIVIATKLGKWGPRRGLAPANIQAAVEDSLRRLGTDVIDLYQAHEDDASVPLEDTLGAFARLIEQGKVRAIGASNYSAARLAQALDVSERHGLPRYETLQPEYNLYDRAGFEAQLQPLARERGLGVINYYSLASGFLTGKYRSRADLGKSRARGGAVAKYLDARGLRILAALDAVAAGHRGATPAQVALAWLIARPSIAAPIASATSVAQLQELIAAARLSLSADEIAALDAASAGG
>NZ_CP011131.1|WP_187313103.1|6030108_6031143_+|hybrid-sensor-histidine-kinase/response-regulator
MVTALLSRQGYEVVSASTGDEALELYAAAPPDLILLDVMMPGMDGFEVMAALRAGSPLRVPVVFVTAAHDRDLLLRAFDAGVVDYVTKPFLPEELLARVNAHVGLKLTRDRLERVAREREELVNLVAHDLKNPLTSVLFASDLLMNNGCKPERIPRYLQMIHESADDALGYIRHYLESQAGTRERAEQTGRADLAETLVWLVRRYEMQLDARGIRVEVQPPPNGAAQVAMDPRVLRQVSENLVTNAMKYAPNSDLLLAARNSAPGFWQLIVADRGPGIPLARQRELFKPFVRLHDADVDDGLSNGLGLSLAKQIVVNAGGQLWYEERKQGGSRFIIELPEAARE
>NZ_CP011131.1|WP_057945137.1|6031378_6031744_-|hypothetical-protein
MSKFESLPDRALELVHAISANLKEAAPKAGQWLETGAKFGALKTGARTAGGFIRRNPVVAVAAVAGAGLLWYAAARRKARIQAEGGEAIEGSARRIDARRSERAEPRRRRASRNGGDESTE
>NZ_CP011131.1|WP_057945720.1|6031963_6034510_-|ATP-dependent-helicase-HrpB
MTTAQFPIDSLLPAIRDSLAAHPRLVLEAPPGAGKTTQVPPALLDAPWLDGRKIIVLEPRRVAARAAANFMARQRGEAAGETVGYRIRFENKVGPRTRIEVVTEGILTRMIQDDPTLDGVGALLFDEFHERHLAADLGLALALDVQASLREDLRIVVMSATLDGERLAQFLDAPRLSSAGRSYPVTLAHFPARREEKLEHQIKRAVEHALVSHPGDVLAFLPGQREIARAEAALAGSEAARGVDVLSLHGELPVEQQSRVLQPDPDGRRRVVLATNVAESSVTLPGVRIVIDSGLAREPRYDPNSGFARLDVVSIAQASADQRAGRAGRVAEGWAYRLWPESQRLEPQRRPEIAQVELAGLVLELAAWGDAGLRFVDPPPGGAMAAARELLLRLGALEGSGTQGATITAFGKRMLALGTHPRLAAMLLAPNDARERALACDLAALIEARDPLRSGGDALAARWQALAAFRGGRAPADASRSALAALDQAARQWRRRLRVETNPPASVPAHALGDLLLHAFPDRIARQHPGDPYRYQLANGRSAKLFDDSAVYGEPWLVIAELRDDPRDARILRAAPLDEARLEREFPQRFVSEDRVLWDAGARGIAAVRERRFDRIVLDSRPLAKPDPARYADALVDAVRQLGLDALPWTESLRQWRARIRCLREWMPELAKGEHALPDLSDEALLAGLDAWLKPALRGKTRLDALDEAAFGEALRSLADWTWRQKLETLAPTRIAVPSGQERAIQYHFEEERHDPHVGASAPVLAVKLQELFGLADTPRIADGRVPLTLHLLSPAGRPLQVTQDLRGFWERGYLEVRKEMKGRYPRHPWPDDPWTATATHRAKPRGT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP011131_5	5.6\|1231702\|18\|NZ_CP011131\|CRT	1231702-1231719	18	NZ_CP011131.1	1549898-1549915	0	1.0
NZ_CP011131_4	4.2\|1175527\|59\|NZ_CP011131\|PILER-CR	1175527-1175585	59	NZ_CP011131.1	1175606-1175664	1	0.983
NZ_CP011131_4	4.2\|1175527\|59\|NZ_CP011131\|PILER-CR	1175527-1175585	59	NZ_CP011131.1	1506579-1506637	1	0.983
NZ_CP011131_5	5.4\|1231606\|18\|NZ_CP011131\|CRT	1231606-1231623	18	NZ_CP011131.1	1549952-1549969	1	0.944
NZ_CP011131_7	7.1\|1838389\|25\|NZ_CP011131\|CRISPRCasFinder	1838389-1838413	25	NZ_CP011131.1	4601360-4601384	1	0.96
NZ_CP011131_7	7.1\|1838389\|25\|NZ_CP011131\|CRISPRCasFinder	1838389-1838413	25	NZ_CP011131.1	5613065-5613089	1	0.96
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP011131.1	46415-46439	1	0.96
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP011131.1	1247091-1247115	1	0.96
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP011131.1	5989373-5989397	1	0.96
NZ_CP011131_3	3.1\|927890\|25\|NZ_CP011131\|CRISPRCasFinder	927890-927914	25	NZ_CP011131.1	4601360-4601384	2	0.92
NZ_CP011131_3	3.1\|927890\|25\|NZ_CP011131\|CRISPRCasFinder	927890-927914	25	NZ_CP011131.1	5613065-5613089	2	0.92
NZ_CP011131_4	4.2\|1175527\|59\|NZ_CP011131\|PILER-CR	1175527-1175585	59	NZ_CP011131.1	3699258-3699316	2	0.966
NZ_CP011131_7	7.1\|1838389\|25\|NZ_CP011131\|CRISPRCasFinder	1838389-1838413	25	NZ_CP011131.1	501353-501377	2	0.92
NZ_CP011131_7	7.1\|1838389\|25\|NZ_CP011131\|CRISPRCasFinder	1838389-1838413	25	NZ_CP011131.1	643197-643221	2	0.92
NZ_CP011131_7	7.1\|1838389\|25\|NZ_CP011131\|CRISPRCasFinder	1838389-1838413	25	NZ_CP011131.1	643409-643433	2	0.92
NZ_CP011131_7	7.1\|1838389\|25\|NZ_CP011131\|CRISPRCasFinder	1838389-1838413	25	NZ_CP011131.1	4370377-4370401	2	0.92
NZ_CP011131_7	7.1\|1838389\|25\|NZ_CP011131\|CRISPRCasFinder	1838389-1838413	25	NZ_CP011131.1	4729592-4729616	2	0.92
NZ_CP011131_7	7.1\|1838389\|25\|NZ_CP011131\|CRISPRCasFinder	1838389-1838413	25	NZ_CP011131.1	3348641-3348665	2	0.92
NZ_CP011131_7	7.1\|1838389\|25\|NZ_CP011131\|CRISPRCasFinder	1838389-1838413	25	NZ_CP011131.1	4595296-4595320	2	0.92
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP011131.1	1873564-1873588	2	0.92
NZ_CP011131_16	16.1\|6022290\|53\|NZ_CP011131\|CRISPRCasFinder	6022290-6022342	53	NZ_CP011131.1	3051759-3051811	2	0.962
NZ_CP011131_16	16.1\|6022290\|53\|NZ_CP011131\|CRISPRCasFinder	6022290-6022342	53	NZ_CP011131.1	3407068-3407120	2	0.962

1. spacer 5.6|1231702|18|NZ_CP011131|CRT matches to position: 1549898-1549915, mismatch: 0, identity: 1.0

cgccaagaagaccgccaa	CRISPR spacer
cgccaagaagaccgccaa	Protospacer
******************

2. spacer 4.2|1175527|59|NZ_CP011131|PILER-CR matches to position: 1175606-1175664, mismatch: 1, identity: 0.983

gcgagaacgtttgaagtctctggatgttcggctccaccgaagtaaagcggagcccgcgt	CRISPR spacer
gcgagaacgtttgaagtctctggatgttcggctccgccgaagtaaagcggagcccgcgt	Protospacer
***********************************.***********************

3. spacer 4.2|1175527|59|NZ_CP011131|PILER-CR matches to position: 1506579-1506637, mismatch: 1, identity: 0.983

gcgagaacgtttgaagtctctggatgttcggctccaccgaagtaaagcggagcccgcgt	CRISPR spacer
gcgagaacgtttgaagtctctggatgttcggctccgccgaagtaaagcggagcccgcgt	Protospacer
***********************************.***********************

4. spacer 5.4|1231606|18|NZ_CP011131|CRT matches to position: 1549952-1549969, mismatch: 1, identity: 0.944

ggctaagaaggccaccaa	CRISPR spacer
ggcgaagaaggccaccaa	Protospacer
*** **************

5. spacer 7.1|1838389|25|NZ_CP011131|CRISPRCasFinder matches to position: 4601360-4601384, mismatch: 1, identity: 0.96

gtctggaaggatggcgctgaagtct	CRISPR spacer
gtctggagggatggcgctgaagtct	Protospacer
*******.*****************

6. spacer 7.1|1838389|25|NZ_CP011131|CRISPRCasFinder matches to position: 5613065-5613089, mismatch: 1, identity: 0.96

gtctggaaggatggcgctgaagtct	CRISPR spacer
gtctggagggatggcgctgaagtct	Protospacer
*******.*****************

7. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to position: 46415-46439, mismatch: 1, identity: 0.96

atccgtcattcccgcgaaagcggga	CRISPR spacer
atccgtcattcccgcgaacgcggga	Protospacer
****************** ******

8. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to position: 1247091-1247115, mismatch: 1, identity: 0.96

atccgtcattcccgcgaaagcggga	CRISPR spacer
atccgtcattcccgcgaacgcggga	Protospacer
****************** ******

9. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to position: 5989373-5989397, mismatch: 1, identity: 0.96

atccgtcattcccgcgaaagcggga	CRISPR spacer
atccgtcattcccgcgaacgcggga	Protospacer
****************** ******

10. spacer 3.1|927890|25|NZ_CP011131|CRISPRCasFinder matches to position: 4601360-4601384, mismatch: 2, identity: 0.92

gtctggaaggatggcgttgaagtct	CRISPR spacer
gtctggagggatggcgctgaagtct	Protospacer
*******.********.********

11. spacer 3.1|927890|25|NZ_CP011131|CRISPRCasFinder matches to position: 5613065-5613089, mismatch: 2, identity: 0.92

gtctggaaggatggcgttgaagtct	CRISPR spacer
gtctggagggatggcgctgaagtct	Protospacer
*******.********.********

12. spacer 4.2|1175527|59|NZ_CP011131|PILER-CR matches to position: 3699258-3699316, mismatch: 2, identity: 0.966

gcgagaacgtttgaagtctctggatgttcggctccaccgaagtaaagcggagcccgcgt	CRISPR spacer
gcgagaacgtttgaagtcactggatgttcggctccgccgaagtaaagcggagcccgcgt	Protospacer
****************** ****************.***********************

13. spacer 7.1|1838389|25|NZ_CP011131|CRISPRCasFinder matches to position: 501353-501377, mismatch: 2, identity: 0.92

gtctggaaggatggcgctgaagtct	CRISPR spacer
gtctggaagggtggcgctgaaggct	Protospacer
**********.*********** **

14. spacer 7.1|1838389|25|NZ_CP011131|CRISPRCasFinder matches to position: 643197-643221, mismatch: 2, identity: 0.92

gtctggaaggatggcgctgaagtct	CRISPR spacer
gtctggagggatggcgctgaagact	Protospacer
*******.************** **

15. spacer 7.1|1838389|25|NZ_CP011131|CRISPRCasFinder matches to position: 643409-643433, mismatch: 2, identity: 0.92

gtctggaaggatggcgctgaagtct	CRISPR spacer
gtctggagggatggcgctgaagact	Protospacer
*******.************** **

16. spacer 7.1|1838389|25|NZ_CP011131|CRISPRCasFinder matches to position: 4370377-4370401, mismatch: 2, identity: 0.92

gtctggaaggatggcgctgaagtct	CRISPR spacer
gtgtggaaggatggcgctgaagact	Protospacer
** ******************* **

17. spacer 7.1|1838389|25|NZ_CP011131|CRISPRCasFinder matches to position: 4729592-4729616, mismatch: 2, identity: 0.92

gtctggaaggatggcgctgaagtct	CRISPR spacer
gtctggagagatggcgctgaagtct	Protospacer
*******..****************

18. spacer 7.1|1838389|25|NZ_CP011131|CRISPRCasFinder matches to position: 3348641-3348665, mismatch: 2, identity: 0.92

gtctggaaggatggcgctgaagtct	CRISPR spacer
gtctggagagatggcgctgaagtct	Protospacer
*******..****************

19. spacer 7.1|1838389|25|NZ_CP011131|CRISPRCasFinder matches to position: 4595296-4595320, mismatch: 2, identity: 0.92

gtctggaaggatggcgctgaagtct	CRISPR spacer
gtccggagggatggcgctgaagtct	Protospacer
***.***.*****************

20. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to position: 1873564-1873588, mismatch: 2, identity: 0.92

atccgtcattcccgcgaaagcggga	CRISPR spacer
attcgtcattcccgcgaacgcggga	Protospacer
**.*************** ******

21. spacer 16.1|6022290|53|NZ_CP011131|CRISPRCasFinder matches to position: 3051759-3051811, mismatch: 2, identity: 0.962

gaaggatgacgctgaagactctggatgttcggctccgccgaagtaaagcgaag	CRISPR spacer
gaaggatgacgctgaagcctctggatgttcggctccgccgaagtaaagcggag	Protospacer
***************** ********************************.**

22. spacer 16.1|6022290|53|NZ_CP011131|CRISPRCasFinder matches to position: 3407068-3407120, mismatch: 2, identity: 0.962

gaaggatgacgctgaagactctggatgttcggctccgccgaagtaaagcgaag	CRISPR spacer
gaaggatgacgctgaaggctctggatgttcggctccgccgaagtaaagcggag	Protospacer
*****************.********************************.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011131_14	14.1\|4968569\|21\|NZ_CP011131\|CRISPRCasFinder	4968569-4968589	21	NZ_CP013109	Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence	583256-583276	1	0.952
NZ_CP011131_14	14.1\|4968569\|21\|NZ_CP011131\|CRISPRCasFinder	4968569-4968589	21	NZ_CP029359	Azospirillum sp. CFH 70021 plasmid unnamed4	16439-16459	1	0.952
NZ_CP011131_14	14.1\|4968569\|21\|NZ_CP011131\|CRISPRCasFinder	4968569-4968589	21	NZ_CP013053	Sinorhizobium americanum CCGM7 plasmid B, complete sequence	543836-543856	1	0.952
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	181822-181846	2	0.92
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	428158-428182	2	0.92
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1328787-1328811	2	0.92
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1332024-1332048	2	0.92
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	468492-468516	2	0.92
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	306837-306861	2	0.92
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1396037-1396061	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	352493-352517	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	715174-715198	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	311101-311125	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	322939-322963	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	425133-425157	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	74432-74456	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	339481-339505	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP019045	Halioglobus pacificus strain RR3-57 plasmid pRR3-57, complete sequence	140524-140548	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	85920-85944	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	107807-107831	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	161434-161458	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	456122-456146	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	473743-473767	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	84057-84081	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	101876-101900	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	781059-781083	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	781126-781150	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	58021-58045	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	347828-347852	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	365566-365590	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	624494-624518	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	624560-624584	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	861520-861544	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	337778-337802	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	444257-444281	3	0.88
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_LR134418	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9	5841-5865	3	0.88
NZ_CP011131_2	2.4\|521806\|29\|NZ_CP011131\|CRISPRCasFinder	521806-521834	29	NZ_CP015597	Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence	213848-213876	4	0.862
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1624690-1624714	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	323007-323031	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	331557-331581	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	520938-520962	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1735589-1735613	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1741804-1741828	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1328721-1328745	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	12928-12952	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	436620-436644	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	413718-413742	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	861386-861410	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	40485-40509	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	655056-655080	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	622593-622617	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP032696	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence	541710-541734	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	562233-562257	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	748044-748068	4	0.84
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP035710	Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence	183099-183123	4	0.84
NZ_CP011131_2	2.4\|521806\|29\|NZ_CP011131\|CRISPRCasFinder	521806-521834	29	NZ_CP045361	Roseivivax sp. THAF40 plasmid pTHAF40_a, complete sequence	73962-73990	5	0.828
NZ_CP011131_2	2.4\|521806\|29\|NZ_CP011131\|CRISPRCasFinder	521806-521834	29	NZ_CP045319	Roseivivax sp. THAF197b plasmid pTHAF197b_a, complete sequence	192062-192090	5	0.828
NZ_CP011131_2	2.4\|521806\|29\|NZ_CP011131\|CRISPRCasFinder	521806-521834	29	NC_020159	Halovirus HSTV-2, complete genome	7157-7185	5	0.828
NZ_CP011131_2	2.4\|521806\|29\|NZ_CP011131\|CRISPRCasFinder	521806-521834	29	KC292021	Halovirus HRTV-7, complete genome	7157-7185	5	0.828
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	956938-956962	5	0.8
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1624622-1624646	5	0.8
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_LR134428	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 19	111082-111106	5	0.8
NZ_CP011131_10	10.1\|2521638\|25\|NZ_CP011131\|CRISPRCasFinder	2521638-2521662	25	NZ_LR134429	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 20	29503-29527	5	0.8
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	558601-558632	6	0.812
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	169591-169622	6	0.812
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	MN871456	UNVERIFIED: Pseudomonas phage Pa-C, complete genome	44096-44127	6	0.812
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP020926	Sphingobium yanoikuyae strain SHJ plasmid pSES220, complete sequence	164116-164144	6	0.793
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP010678	Phaeobacter gallaeciensis strain P75 plasmid pP75_e, complete sequence	63882-63910	6	0.793
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NC_023142	Phaeobacter gallaeciensis DSM 26640 plasmid pGal_F69, complete sequence	63911-63939	6	0.793
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP010789	Phaeobacter gallaeciensis strain P63 plasmid pP63_e, complete sequence	63876-63904	6	0.793
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP022747	Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence	10039-10067	6	0.793
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP022749	Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence	93218-93246	6	0.793
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP010642	Phaeobacter gallaeciensis strain P73 plasmid pP73_f, complete sequence	63882-63910	6	0.793
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP010593	Phaeobacter gallaeciensis strain P11 plasmid pP11_e, complete sequence	63908-63936	6	0.793
NZ_CP011131_5	5.3\|1231546\|30\|NZ_CP011131\|CRT	1231546-1231575	30	NZ_CP032230	Streptomyces seoulensis strain KCTC 9819 plasmid unnamed	57860-57889	6	0.8
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_LR723678	Arsenite-oxidising bacterium NT-25 plasmid 2	140794-140825	7	0.781
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	CP000385	Mycobacterium sp. MCS Plasmid1, complete sequence	125278-125309	7	0.781
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NC_008704	Mycobacterium sp. KMS plasmid pMKMS02, complete sequence	151337-151368	7	0.781
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_FO082821	Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence	222015-222046	7	0.781
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	MH271308	Microbacterium phage Percival, complete genome	3545-3576	7	0.781
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NC_022001	Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence	33932-33963	7	0.781
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	552173-552204	7	0.781
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NC_009507	Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence	195561-195589	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	232821-232849	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	229487-229515	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	682735-682763	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5363898-5363926	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	8916-8944	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	104832-104860	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	415651-415679	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	229463-229491	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	598488-598516	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	545376-545404	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	597195-597223	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	291810-291838	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_LR134450	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence	152871-152899	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	245987-246015	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	216753-216781	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	545376-545404	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	306374-306402	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	853728-853756	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	995048-995076	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP039644	Azospirillum sp. TSA2s plasmid p2, complete sequence	332448-332476	7	0.759
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	592184-592212	7	0.759
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	CP032840	Aeromonas veronii strain FC951 plasmid unnamed	87907-87938	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP022520	Pantoea vagans strain FBS135 plasmid pPant4, complete sequence	21323-21354	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NC_007765	Rhizobium etli CFN 42 plasmid p42e, complete sequence	38173-38204	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	38264-38295	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013525	Rhizobium phaseoli strain R744 plasmid pRphaR744c, complete sequence	39091-39122	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP020909	Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence	38166-38197	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013588	Rhizobium phaseoli strain N161 plasmid pRphaN161c, complete sequence	39005-39036	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013560	Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence	39022-39053	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013577	Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence	43955-43986	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013549	Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence	43955-43986	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013529	Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence	39006-39037	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013534	Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence	43955-43986	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013539	Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence	37262-37293	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013545	Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence	43955-43986	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NC_021908	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence	38152-38183	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	39965-39996	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013582	Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence	39006-39037	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013509	Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence	39965-39996	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013520	Rhizobium sp. N113 plasmid pRspN113c, complete sequence	39965-39996	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013571	Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence	43955-43986	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP021126	Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence	39407-39438	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013493	Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence	39965-39996	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	40345-40376	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	694875-694906	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	CP007642	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence	38305-38336	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	515320-515351	8	0.75
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	MH271298	Microbacterium phage Floof, complete genome	3606-3637	8	0.75
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_LR723681	Arsenite-oxidising bacterium NT-25 plasmid 5	7328-7356	8	0.724
NZ_CP011131_2	2.3\|521752\|29\|NZ_CP011131\|CRISPRCasFinder	521752-521780	29	NZ_FO082822	Rhizobium sp. NT-26 plasmid NT26_p2, complete sequence	3387-3415	8	0.724
NZ_CP011131_12	12.1\|2785664\|33\|NZ_CP011131\|CRISPRCasFinder	2785664-2785696	33	MH697589	Microbacterium phage Neferthena, complete genome	12364-12396	8	0.758
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	MK473373	Pseudomonas phage Lana, complete genome	56686-56717	9	0.719
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP053906	Hymenobacter sp. BRD67 plasmid unnamed2, complete sequence	20769-20800	9	0.719
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	1301846-1301877	9	0.719
NZ_CP011131_12	12.1\|2785664\|33\|NZ_CP011131\|CRISPRCasFinder	2785664-2785696	33	NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	605153-605185	9	0.727
NZ_CP011131_12	12.1\|2785664\|33\|NZ_CP011131\|CRISPRCasFinder	2785664-2785696	33	NC_015065	Granulicella tundricola MP5ACTX9 plasmid pACIX902, complete sequence	15390-15422	9	0.727
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	273633-273664	10	0.688
NZ_CP011131_2	2.1\|521641\|32\|NZ_CP011131\|CRISPRCasFinder	521641-521672	32	MT162467	Synechococcus phage S-H34, complete genome	138551-138582	10	0.688

1. spacer 14.1|4968569|21|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013109 (Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence) position: , mismatch: 1, identity: 0.952

ggtggccggcaccgaggacgc	CRISPR spacer
ggtggccgacaccgaggacgc	Protospacer
********.************

2. spacer 14.1|4968569|21|NZ_CP011131|CRISPRCasFinder matches to NZ_CP029359 (Azospirillum sp. CFH 70021 plasmid unnamed4) position: , mismatch: 1, identity: 0.952

ggtggccggcaccgaggacgc	CRISPR spacer
ggtggtcggcaccgaggacgc	Protospacer
*****.***************

3. spacer 14.1|4968569|21|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013053 (Sinorhizobium americanum CCGM7 plasmid B, complete sequence) position: , mismatch: 1, identity: 0.952

ggtggccggcaccgaggacgc	CRISPR spacer
ggtggccgacaccgaggacgc	Protospacer
********.************

4. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 2, identity: 0.92

atccgtcattcccgcgaaagcggga	CRISPR spacer
tgccgtcattcccgcgaaagcggga	Protospacer
  ***********************

5. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 2, identity: 0.92

atccgtcattcccgcgaaagcggga	CRISPR spacer
acccgtcattcccgcgaaggcggga	Protospacer
*.****************.******

6. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 2, identity: 0.92

atccgtcattcccgcgaaagcggga	CRISPR spacer
ctccgtcattcccgcgaaggcggga	Protospacer
 *****************.******

7. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 2, identity: 0.92

atccgtcattcccgcgaaagcggga	CRISPR spacer
tttcgtcattcccgcgaaagcggga	Protospacer
 *.**********************

8. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 2, identity: 0.92

atccgtcattcccgcgaaagcggga	CRISPR spacer
acccgtcattcccgcgaaggcggga	Protospacer
*.****************.******

9. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.92

atccgtcattcccgcgaaagcggga	CRISPR spacer
agccgtcattcccgcgaaggcggga	Protospacer
* ****************.******

10. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
catcgtcattcccgcgaaagcggga	Protospacer
  .**********************

11. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
tcccgtcattcccgcgaaggcggga	Protospacer
 .****************.******

12. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
tcccgtcattcccgcgaaggcggga	Protospacer
 .****************.******

13. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
atccgtcatccccgcgaaggcgggg	Protospacer
*********.********.*****.

14. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ttccgtcatccccgcgaaggcggga	Protospacer
 ********.********.******

15. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ctcagtcattcccgcgaaggcggga	Protospacer
 ** **************.******

16. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
tggcgtcattcccgcgaaagcggga	Protospacer
   **********************

17. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ccccgtcattcccgcgaaggcggga	Protospacer
 .****************.******

18. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP019045 (Halioglobus pacificus strain RR3-57 plasmid pRR3-57, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
tcccgtcattcccgcgaaggcggga	Protospacer
 .****************.******

19. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgaaggcggga	Protospacer
. ****************.******

20. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgaaggcggga	Protospacer
. ****************.******

21. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
gaccgtcattcccgcgaaggcggga	Protospacer
. ****************.******

22. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgaaggcggga	Protospacer
. ****************.******

23. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgaaggcggga	Protospacer
. ****************.******

24. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgaaggcggga	Protospacer
. ****************.******

25. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgaaggcggga	Protospacer
. ****************.******

26. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ccccgtcattcccgcgaaggcggga	Protospacer
 .****************.******

27. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
atccgtcatccccgcgaaggcgggg	Protospacer
*********.********.*****.

28. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgaaggcggga	Protospacer
. ****************.******

29. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgaaggcggga	Protospacer
. ****************.******

30. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgaaggcggga	Protospacer
. ****************.******

31. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
gcccgtcattcccgcgaaggcggga	Protospacer
..****************.******

32. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgaaggcggga	Protospacer
. ****************.******

33. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgaaggcggga	Protospacer
. ****************.******

34. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
agccgtcattcccgcgaaagctggg	Protospacer
* ******************* **.

35. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
atccgtcatccccgtgaaagcgggg	Protospacer
*********.****.*********.

36. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_LR134418 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9) position: , mismatch: 3, identity: 0.88

atccgtcattcccgcgaaagcggga	CRISPR spacer
agctgtcattcccgcgcaagcggga	Protospacer
* *.************ ********

37. spacer 2.4|521806|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP015597 (Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence) position: , mismatch: 4, identity: 0.862

tcgccgcggcgttcgctggagc--ctaccga	CRISPR spacer
tcgccgcggcgttcgctggaaccgccacc--	Protospacer
********************.*  *.***

38. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
tatcgtcattcccgcgaaggcggga	Protospacer
  .***************.******

39. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
ttccgtcatccccgcgaaggcgggg	Protospacer
 ********.********.*****.

40. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
cgccgtcatttccgcgaaggcggga	Protospacer
  ********.*******.******

41. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
cgccgtcattcgcgcgacagcggga	Protospacer
  ********* ***** *******

42. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
gacagtcattcccgcgaaggcggga	Protospacer
. * **************.******

43. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
cgccgtcattcccgcgaaggcggca	Protospacer
  ****************.**** *

44. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
ttccgtcatccccgcgaaggcgggg	Protospacer
 ********.********.*****.

45. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgagggcggga	Protospacer
. ***************..******

46. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
gaccgtcatccccgcgaaagcgggg	Protospacer
. *******.**************.

47. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
ttccgtcatccccgcgaaggcgggg	Protospacer
 ********.********.*****.

48. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
gaccgtcatccccgcgaaagcgggg	Protospacer
. *******.**************.

49. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
cggcgtcattcccgcgaaggcggga	Protospacer
   ***************.******

50. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
ttgcgtcatccccgcgaaagcgggg	Protospacer
 * ******.**************.

51. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcactcccgcgaaggcggga	Protospacer
. ******.*********.******

52. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP032696 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
cgccgtcattcccgcggaagccgga	Protospacer
  **************.**** ***

53. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
tgccgtcattcccgcaaaggcggga	Protospacer
  *************.**.******

54. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
ggccgtcattcccgcgcaggcggga	Protospacer
. ************** *.******

55. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP035710 (Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence) position: , mismatch: 4, identity: 0.84

atccgtcattcccgcgaaagcggga	CRISPR spacer
ttccgtcatgcccgcgaaggcgggc	Protospacer
 ******** ********.*****

56. spacer 2.4|521806|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP045361 (Roseivivax sp. THAF40 plasmid pTHAF40_a, complete sequence) position: , mismatch: 5, identity: 0.828

tcgccgcggcgttcgctggagcc--taccga	CRISPR spacer
tcgccgcgcctttcgctggagccaggacc--	Protospacer
******** * ************   ***

57. spacer 2.4|521806|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP045319 (Roseivivax sp. THAF197b plasmid pTHAF197b_a, complete sequence) position: , mismatch: 5, identity: 0.828

tcgccgcggcgttcgctggagcc--taccga	CRISPR spacer
tcgccgcgcctttcgctggagccaggacc--	Protospacer
******** * ************   ***

58. spacer 2.4|521806|29|NZ_CP011131|CRISPRCasFinder matches to NC_020159 (Halovirus HSTV-2, complete genome) position: , mismatch: 5, identity: 0.828

tcgccgcggcgttcgctggagc--ctaccga	CRISPR spacer
tcgcggcggcgttcgctgaagccgccacc--	Protospacer
**** *************.***  *.***

59. spacer 2.4|521806|29|NZ_CP011131|CRISPRCasFinder matches to KC292021 (Halovirus HRTV-7, complete genome) position: , mismatch: 5, identity: 0.828

tcgccgcggcgttcgctggagc--ctaccga	CRISPR spacer
tcgcggcggcgttcgctgaagccgccacc--	Protospacer
**** *************.***  *.***

60. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 5, identity: 0.8

atccgtcattcccgcgaaagcggga	CRISPR spacer
cgttgtcattcccgcgaaggcggga	Protospacer
  ..**************.******

61. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 5, identity: 0.8

atccgtcattcccgcgaaagcggga	CRISPR spacer
cctcgtcatccccgcgaaagcgggg	Protospacer
 ..******.**************.

62. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_LR134428 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 19) position: , mismatch: 5, identity: 0.8

atccgtcattcccgcgaaagcggga	CRISPR spacer
gggtgtcattctcgcgaaagcggga	Protospacer
.  .*******.*************

63. spacer 10.1|2521638|25|NZ_CP011131|CRISPRCasFinder matches to NZ_LR134429 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 20) position: , mismatch: 5, identity: 0.8

atccgtcattcccgcgaaagcggga	CRISPR spacer
gcgtgtcattcccgcgaaggcggga	Protospacer
.. .**************.******

64. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 6, identity: 0.812

tcggcggtggcggtcaggttggtgccggcacg-	CRISPR spacer
gcggcggtggcgatcagggtggtg-cggcgcat	Protospacer
 ***********.***** ***** ****.*.

65. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 6, identity: 0.812

tcggcggtggcggtcaggttggtgccggcacg-	CRISPR spacer
gcggcggtggcgatcagggtggtg-cggcgcat	Protospacer
 ***********.***** ***** ****.*.

66. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to MN871456 (UNVERIFIED: Pseudomonas phage Pa-C, complete genome) position: , mismatch: 6, identity: 0.812

tcggcggtggcggtcaggttggtgccggcacg-	CRISPR spacer
tggccgggggcggccaggttggtgcc-gcgcgg	Protospacer
* * *** *****.************ **.**

67. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP020926 (Sphingobium yanoikuyae strain SHJ plasmid pSES220, complete sequence) position: , mismatch: 6, identity: 0.793

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
tcttcgtcccgggcgtggtcgccgccagc	Protospacer
****** ********* ******* *  .

68. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP010678 (Phaeobacter gallaeciensis strain P75 plasmid pP75_e, complete sequence) position: , mismatch: 6, identity: 0.793

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
cctttgacccgggcgtggtcgccgaagat	Protospacer
.***.*********** ********   *

69. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NC_023142 (Phaeobacter gallaeciensis DSM 26640 plasmid pGal_F69, complete sequence) position: , mismatch: 6, identity: 0.793

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
cctttgacccgggcgtggtcgccgaagat	Protospacer
.***.*********** ********   *

70. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP010789 (Phaeobacter gallaeciensis strain P63 plasmid pP63_e, complete sequence) position: , mismatch: 6, identity: 0.793

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
cctttgacccgggcgtggtcgccgaagat	Protospacer
.***.*********** ********   *

71. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP022747 (Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.793

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
tcttcgtcccgggcgtggtcgccgccagc	Protospacer
****** ********* ******* *  .

72. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP022749 (Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.793

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
tcttcgtcccgggcgtggtcgccgccagc	Protospacer
****** ********* ******* *  .

73. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP010642 (Phaeobacter gallaeciensis strain P73 plasmid pP73_f, complete sequence) position: , mismatch: 6, identity: 0.793

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
cctttgacccgggcgtggtcgccgaagat	Protospacer
.***.*********** ********   *

74. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP010593 (Phaeobacter gallaeciensis strain P11 plasmid pP11_e, complete sequence) position: , mismatch: 6, identity: 0.793

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
cctttgacccgggcgtggtcgccgaagat	Protospacer
.***.*********** ********   *

75. spacer 5.3|1231546|30|NZ_CP011131|CRT matches to NZ_CP032230 (Streptomyces seoulensis strain KCTC 9819 plasmid unnamed) position: , mismatch: 6, identity: 0.8

cgtgaagaagacggctaagaaggctgccaa	CRISPR spacer
cgcgaagaagacggcgaagaaggccacccc	Protospacer
**.************ ********..**

76. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_LR723678 (Arsenite-oxidising bacterium NT-25 plasmid 2) position: , mismatch: 7, identity: 0.781

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
tcggcggtgacggacaggttggtgcggccggt	Protospacer
*********.*** *********** * *.

77. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to CP000385 (Mycobacterium sp. MCS Plasmid1, complete sequence) position: , mismatch: 7, identity: 0.781

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
tagccggtggcggtctggttgatgccggcggc	Protospacer
* * *********** *****.*******.

78. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NC_008704 (Mycobacterium sp. KMS plasmid pMKMS02, complete sequence) position: , mismatch: 7, identity: 0.781

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
tagccggtggcggtctggttgatgccggcggc	Protospacer
* * *********** *****.*******.

79. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_FO082821 (Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence) position: , mismatch: 7, identity: 0.781

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
tcggcggtgacggacaggttggtgcggccggt	Protospacer
*********.*** *********** * *.

80. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to MH271308 (Microbacterium phage Percival, complete genome) position: , mismatch: 7, identity: 0.781

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
tccacggtggcggccaggttggtgccgtcggc	Protospacer
** .*********.************* *.

81. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NC_022001 (Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence) position: , mismatch: 7, identity: 0.781

tcggcggtggcggtcaggttggtgcc-ggcacg	CRISPR spacer
tagcgggtgacggtcagggtggtgccgggcat-	Protospacer
* *  ****.******** ******* ****.

82. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

tcggcggtggcggtcaggttggtgccggcacg-	CRISPR spacer
gcggcggtggagttcaggttggtg-aggtactc	Protospacer
 ********* * ***********  **.**

83. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NC_009507 (Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
tcttcgtcccgggcgtggtcgccgcaagc	Protospacer
****** ********* *******    .

84. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

85. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

86. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

87. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
taccacacccggccgctgtcgccgacctt	Protospacer
* ..  ****** **.*************

88. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

89. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

90. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

91. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

92. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
tattcggcccgggcggtgtcgccgaaggc	Protospacer
* ****.******** *********   .

93. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

94. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
tattcggcccgggcggtgtcgccgaaggc	Protospacer
* ****.******** *********   .

95. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

96. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_LR134450 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ctttcgactcgggcgttggcgccgaggtc	Protospacer
..******.********* ******  *.

97. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

98. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

99. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

100. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

101. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

102. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

103. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP039644 (Azospirillum sp. TSA2s plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
cgatcgacccggccgtcgtcgccgacttg	Protospacer
.  ********* ***.*********.*

104. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 7, identity: 0.759

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ccgacgagccggtcgttgtcgccgaccgg	Protospacer
.*  *** **** **************

105. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to CP032840 (Aeromonas veronii strain FC951 plasmid unnamed) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acaacggcggcggtcagggtggtgccggagcc	Protospacer
 *..***.********** ********* .*

106. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP022520 (Pantoea vagans strain FBS135 plasmid pPant4, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
ttgtttatggcggccaggtcggtgccggcaca	Protospacer
*.* . .******.*****.***********.

107. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NC_007765 (Rhizobium etli CFN 42 plasmid p42e, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

108. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

109. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013525 (Rhizobium phaseoli strain R744 plasmid pRphaR744c, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

110. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

111. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013588 (Rhizobium phaseoli strain N161 plasmid pRphaN161c, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

112. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013560 (Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

113. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013577 (Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

114. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013549 (Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

115. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013529 (Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

116. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013534 (Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

117. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013539 (Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

118. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013545 (Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

119. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NC_021908 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

120. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggacag	Protospacer
 **..*******.********.******   *

121. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013582 (Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

122. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggacag	Protospacer
 **..*******.********.******   *

123. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggacag	Protospacer
 **..*******.********.******   *

124. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013571 (Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

125. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP021126 (Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

126. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggacag	Protospacer
 **..*******.********.******   *

127. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggacag	Protospacer
 **..*******.********.******   *

128. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

129. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to CP007642 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

130. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggagag	Protospacer
 **..*******.********.****** . *

131. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to MH271298 (Microbacterium phage Floof, complete genome) position: , mismatch: 8, identity: 0.75

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
tccacggtcgcggccaggttggtgccgtcggc	Protospacer
** .**** ****.************* *.

132. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_LR723681 (Arsenite-oxidising bacterium NT-25 plasmid 5) position: , mismatch: 8, identity: 0.724

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ataccgacccgggcgctgtcaccgaccgg	Protospacer
 . .***********.****.******

133. spacer 2.3|521752|29|NZ_CP011131|CRISPRCasFinder matches to NZ_FO082822 (Rhizobium sp. NT-26 plasmid NT26_p2, complete sequence) position: , mismatch: 8, identity: 0.724

tcttcgacccgggcgttgtcgccgacctt	CRISPR spacer
ataccgacccgggcgctgtcaccgaccgg	Protospacer
 . .***********.****.******

134. spacer 12.1|2785664|33|NZ_CP011131|CRISPRCasFinder matches to MH697589 (Microbacterium phage Neferthena, complete genome) position: , mismatch: 8, identity: 0.758

agaatgacggtctgggggatggcgctga--agtcg	CRISPR spacer
gccatgatgatctgggggatggcgctgaccagc--	Protospacer
.  ****.*.******************  **.

135. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to MK473373 (Pseudomonas phage Lana, complete genome) position: , mismatch: 9, identity: 0.719

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
ttctcggtggcggccagggtggtgccggaggt	Protospacer
*.  *********.**** ********* .

136. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP053906 (Hymenobacter sp. BRD67 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
cccgtggcgtcggtcaggttggtgccggttac	Protospacer
.* *.**.* ******************.

137. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 9, identity: 0.719

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
acgatggtggcgatcaggttgatgccggataa	Protospacer
 **..*******.********.******   .

138. spacer 12.1|2785664|33|NZ_CP011131|CRISPRCasFinder matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 9, identity: 0.727

agaatgacggtctgggggatggcgctgaagtcg	CRISPR spacer
cccgtgacgttctgggggagggcgctgatctgg	Protospacer
   .***** ********* ********  * *

139. spacer 12.1|2785664|33|NZ_CP011131|CRISPRCasFinder matches to NC_015065 (Granulicella tundricola MP5ACTX9 plasmid pACIX902, complete sequence) position: , mismatch: 9, identity: 0.727

agaatgacggtctgggggatggcgctgaagtcg	CRISPR spacer
aaggggaaggtctgggtgatggcgctgaaactg	Protospacer
*... ** ******** ************...*

140. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 10, identity: 0.688

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
gagccggtgacggtcaggctggtgccgcggtt	Protospacer
  * *****.********.********  ..

141. spacer 2.1|521641|32|NZ_CP011131|CRISPRCasFinder matches to MT162467 (Synechococcus phage S-H34, complete genome) position: , mismatch: 10, identity: 0.688

tcggcggtggcggtcaggttggtgccggcacg	CRISPR spacer
ccggcggtggtggtcagggtggtggccaaggt	Protospacer
.*********.******* ***** * . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3902721 : 3992751

Stenotrophomonas_phage(27.5%)

portal,head,capsid,terminase,protease,tRNA,transposase,tail,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057943703.1\|3902721_3905130_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_057943704.1\|3905263_3906274_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	7.3e-33	39.7
WP_148648952.1\|3906385_3906658_-	hypothetical protein	NA	NA	NA	NA
WP_057943706.1\|3906809_3907169_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_027083463.1\|3907181_3907379_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_148648953.1\|3907589_3908351_-	hypothetical protein	NA	NA	NA	NA
WP_083512912.1\|3908508_3909057_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.5e-13	35.2
WP_057943708.1\|3909106_3911008_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.4e-124	35.7
WP_057943709.1\|3911559_3913377_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	2.6e-44	28.8
WP_057943710.1\|3913373_3914510_+	hypothetical protein	NA	NA	NA	NA
WP_187313031.1\|3914653_3914821_-	hypothetical protein	NA	NA	NA	NA
WP_057943711.1\|3915476_3917507_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_057943712.1\|3917665_3918118_-	type IV pilin protein	NA	NA	NA	NA
WP_057943713.1\|3918130_3921943_-	hypothetical protein	NA	NA	NA	NA
WP_057943714.1\|3921953_3922472_-	hypothetical protein	NA	NA	NA	NA
WP_187313032.1\|3922480_3923680_-	PilW family protein	NA	NA	NA	NA
WP_057943716.1\|3923721_3924213_-	type IV pilus modification protein PilV	NA	NA	NA	NA
WP_187313033.1\|3924209_3924686_-	GspH/FimT family pseudopilin	NA	NA	NA	NA
WP_057943718.1\|3924970_3925636_+	GspH/FimT family pseudopilin	NA	NA	NA	NA
WP_057943719.1\|3925964_3927035_-	macro domain-containing protein	A0A0B4N0V6	Escherichia_phage	3.5e-17	37.9
WP_148648955.1\|3927034_3927172_-	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_148648703.1\|3927209_3928350_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.0e-91	60.2
WP_083512583.1\|3928358_3928892_-	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_148648956.1\|3929740_3930724_+	hypothetical protein	NA	NA	NA	NA
WP_187313034.1\|3930812_3933617_+	chromosome segregation protein SMC	A0A1B1IUG5	uncultured_Mediterranean_phage	3.7e-10	21.8
WP_057945532.1\|3934974_3935601_+	DUF1629 domain-containing protein	NA	NA	NA	NA
WP_083512585.1\|3935652_3939237_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_148648958.1\|3939350_3939977_-	hypothetical protein	NA	NA	NA	NA
WP_057943723.1\|3940081_3941089_-\|portal	phage portal protein	A4PE27	Ralstonia_virus	6.6e-127	64.2
WP_057943724.1\|3941088_3942849_-\|terminase	terminase ATPase subunit family protein	E5FFI8	Burkholderia_phage	3.9e-231	67.2
WP_083512913.1\|3942989_3943832_+\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	3.4e-60	51.1
WP_057943726.1\|3943874_3944888_+\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	6.9e-116	60.9
WP_057943727.1\|3944891_3945626_+	hypothetical protein	K4NX86	Burkholderia_phage	3.0e-52	54.5
WP_057943728.1\|3945755_3946229_+\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	1.3e-27	45.0
WP_057943729.1\|3946228_3946438_+\|tail	tail protein X	Q94MF6	Enterobacteria_phage	2.0e-14	59.4
WP_148648959.1\|3946446_3946845_+	hypothetical protein	NA	NA	NA	NA
WP_057943731.1\|3946841_3947255_+	hypothetical protein	NA	NA	NA	NA
WP_057943732.1\|3947244_3947883_+	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	9.0e-45	57.1
WP_057943733.1\|3947879_3948368_+	hypothetical protein	V9IQW8	Stenotrophomonas_phage	4.6e-25	61.8
WP_057943734.1\|3948364_3948802_+\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	2.9e-26	47.4
WP_083512586.1\|3948798_3949266_+	phage virion morphogenesis protein	E5FFH6	Burkholderia_phage	1.5e-33	51.7
WP_148648960.1\|3949400_3951689_+	hypothetical protein	A0A1L2BY82	Clostridium_phage	8.5e-45	25.6
WP_148648961.1\|3951708_3952173_-	hypothetical protein	NA	NA	NA	NA
WP_057943738.1\|3952317_3953208_+\|plate	baseplate J/gp47 family protein	V9IQV9	Stenotrophomonas_phage	1.7e-86	54.7
WP_057943739.1\|3953200_3953767_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.5e-48	51.4
WP_148648962.1\|3953763_3955491_+\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	3.6e-80	36.5
WP_057943741.1\|3955493_3956123_+	hypothetical protein	V9IQM3	Stenotrophomonas_phage	5.6e-23	37.9
WP_057943742.1\|3956201_3956774_+\|plate	phage baseplate assembly protein V	V9IQH1	Stenotrophomonas_phage	7.3e-30	61.9
WP_057943743.1\|3956770_3957127_+	GPW/gp25 family protein	V9IQW0	Stenotrophomonas_phage	2.2e-32	64.1
WP_187313202.1\|3957232_3958312_+\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	6.6e-125	61.8
WP_057943745.1\|3958334_3958847_+\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	1.8e-51	59.2
WP_083512587.1\|3958901_3959240_+\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	1.2e-19	50.0
WP_083512588.1\|3959248_3959365_+\|tail	GpE family phage tail protein	E5E3U7	Burkholderia_phage	3.2e-09	77.1
WP_057943746.1\|3959361_3962328_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	1.0e-95	33.2
WP_057943747.1\|3962331_3962739_+\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	5.7e-37	61.6
WP_057943748.1\|3962735_3963728_+	phage late control D family protein	E5FFG3	Burkholderia_phage	5.1e-87	51.5
WP_187313035.1\|3964302_3964734_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_083512590.1\|3964810_3965026_+	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	1.5e-07	53.6
WP_148649209.1\|3965046_3965304_+	ogr/Delta-like zinc finger family protein	E5E3T8	Burkholderia_phage	1.6e-13	51.3
WP_057943749.1\|3965410_3968059_+	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	3.5e-252	50.0
WP_148648964.1\|3968126_3968747_+	hypothetical protein	NA	NA	NA	NA
WP_083512592.1\|3969452_3969674_+	hypothetical protein	V9IQX6	Stenotrophomonas_phage	1.7e-11	57.1
WP_057943751.1\|3969673_3970897_+	hypothetical protein	V9IQN0	Stenotrophomonas_phage	8.1e-111	52.1
WP_057943752.1\|3971139_3972522_-	LOG family protein	NA	NA	NA	NA
WP_057943753.1\|3972756_3975981_-	TonB-dependent receptor	NA	NA	NA	NA
WP_057943754.1\|3976412_3977006_-	YhgN family NAAT transporter	NA	NA	NA	NA
WP_057945534.1\|3977017_3977746_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_057943755.1\|3977778_3978099_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_057943756.1\|3978291_3978870_+	superoxide dismutase	NA	NA	NA	NA
WP_057943757.1\|3979023_3980901_+	hypothetical protein	NA	NA	NA	NA
WP_057943758.1\|3981060_3981576_+	hypothetical protein	NA	NA	NA	NA
WP_057943759.1\|3981736_3982876_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_057943760.1\|3982872_3983412_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.0e-17	39.2
WP_057943761.1\|3983476_3983746_+	hypothetical protein	NA	NA	NA	NA
WP_057943762.1\|3983742_3984636_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_057943763.1\|3984675_3984999_+	DUF3301 domain-containing protein	NA	NA	NA	NA
WP_083512593.1\|3985346_3985844_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	2.6e-23	46.9
WP_057945536.1\|3986147_3986783_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_057943764.1\|3986961_3987705_-	cytochrome c1	NA	NA	NA	NA
WP_057943765.1\|3987781_3989041_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA
WP_057943766.1\|3989044_3989656_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_057943767.1\|3990057_3991071_-	lytic transglycosylase domain-containing protein	A0A0S2SXL7	Bacillus_phage	1.9e-25	52.0
WP_057943768.1\|3991323_3992751_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA

DBSCAN-SWA_2

5463998 : 5487206

Pseudomonas_phage(22.22%)

head,capsid,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057944723.1\|5463998_5466212_-	hypothetical protein	Q5ZQV9	Pseudomonas_phage	1.1e-206	51.9
WP_057944724.1\|5466198_5466420_-	hypothetical protein	H6V8R0	Pseudomonas_phage	1.0e-11	50.0
WP_083512760.1\|5466571_5467999_+	hypothetical protein	NA	NA	NA	NA
WP_057944725.1\|5468005_5468242_-	hypothetical protein	Q6UYJ6	Burkholderia_phage	2.4e-19	60.3
WP_057944726.1\|5468256_5469072_-	phage BR0599 family protein	K4I436	Providencia_phage	4.6e-62	41.5
WP_057944727.1\|5469068_5470784_-	hypothetical protein	Q5ZQW3	Pseudomonas_phage	9.5e-142	50.3
WP_057944728.1\|5470796_5471732_-	hypothetical protein	A0A2D1GMS8	Marinobacter_phage	2.8e-18	25.1
WP_057944729.1\|5471731_5473306_-	hypothetical protein	A0A2D2W2B4	Stenotrophomonas_phage	2.2e-108	40.5
WP_148649094.1\|5473341_5473929_+	hypothetical protein	NA	NA	NA	NA
WP_057944731.1\|5473903_5476594_-	tape measure protein	K7RVL7	Vibrio_phage	4.1e-38	37.0
WP_057944732.1\|5476661_5477051_-	hypothetical protein	NA	NA	NA	NA
WP_057944733.1\|5477047_5477524_-	glycoside hydrolase family 104 protein	A0A1W6JT17	Escherichia_phage	3.2e-39	53.4
WP_057944734.1\|5477504_5477726_-	hypothetical protein	A0A0B5A601	Paracoccus_phage	1.3e-06	34.3
WP_057944735.1\|5477907_5478339_-	hypothetical protein	NA	NA	NA	NA
WP_057944736.1\|5478338_5479097_-	hypothetical protein	A0A0S4L1I6	Pseudomonas_phage	3.4e-59	48.6
WP_057944737.1\|5479149_5479698_-	hypothetical protein	NA	NA	NA	NA
WP_057944738.1\|5479697_5480126_-	hypothetical protein	NA	NA	NA	NA
WP_057944739.1\|5480118_5480409_-	hypothetical protein	NA	NA	NA	NA
WP_057945678.1\|5480413_5481415_-\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	2.3e-116	62.5
WP_057944740.1\|5481424_5481817_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	5.9e-23	50.4
WP_057944741.1\|5481816_5482992_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	2.9e-65	42.4
WP_057944742.1\|5482988_5484485_-\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	8.9e-144	56.3
WP_057944743.1\|5484486_5484705_-	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	5.2e-13	60.9
WP_148649232.1\|5484701_5486603_-\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	4.3e-252	68.6
WP_057944745.1\|5486654_5487206_-	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	4.4e-48	59.2

DBSCAN-SWA_3

5498733 : 5510723

Acidithiobacillus_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057945679.1\|5498733_5499204_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	2.2e-48	65.5
WP_057944760.1\|5499331_5501626_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	2.0e-280	62.1
WP_148649098.1\|5501622_5502471_-	ParB N-terminal domain-containing protein	R4W339	Alteromonas_phage	3.7e-06	40.0
WP_148649099.1\|5502467_5503364_-	hypothetical protein	R4JHP8	Mycobacterium_phage	3.0e-22	29.8
WP_057944763.1\|5503378_5504128_-	hypothetical protein	K4HZA0	Acidithiobacillus_phage	1.7e-79	60.2
WP_148649100.1\|5504181_5504562_-	hypothetical protein	K4I3X7	Acidithiobacillus_phage	2.4e-13	36.0
WP_057944765.1\|5504625_5505246_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	5.1e-53	53.5
WP_057944766.1\|5505260_5506088_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	4.2e-103	65.6
WP_057944767.1\|5506122_5506593_-	hypothetical protein	K4HZ96	Acidithiobacillus_phage	7.3e-28	45.1
WP_057945680.1\|5506589_5506796_-	helix-turn-helix domain-containing protein	A0A0K0N7A4	Gordonia_phage	1.3e-05	44.2
WP_148649101.1\|5507449_5508358_+	hypothetical protein	NA	NA	NA	NA
WP_148649102.1\|5508535_5509003_+	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	2.1e-11	36.4
WP_057944770.1\|5509002_5509392_+	recombinase family protein	NA	NA	NA	NA
WP_057944771.1\|5509388_5510723_+	recombinase family protein	K4ICM1	Acidithiobacillus_phage	5.4e-108	50.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011131

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection