CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013129	Streptomyces venezuelae strain ATCC 15439, complete genome	7 crisprs	csa3,Cas14u_CAS-V,DEDDh,WYL,cas4,c2c9_V-U4,cas3,c2c10_CAS-V-U3,DinG	1	3	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013129_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013129_1

2033624-2033736

Orphan

Consensus_repeat	Method
AACACGACGCAGGAGGCCGGTCGATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013129_1

>merge|NZ_CP013129|1|2033624-2033736|CRISPRCasFinder
AACACGACGCAGGAGGCCGGTCGATGAACGCGCGCCACCAGATTTGCCGGGGGTCCGGGGGTCGTCCCCCGGGCAAGCACAGCCTGAACACGACGCAGGAGGCCGGACGATGA

>NZ_CP013129|1|1|2033624-2033736|CRISPRCasFinder
AACACGACGCAGGAGGCCGGTCGATGA	ACGCGCGCCACCAGATTTGCCGGGGGTCCGGGGGTCGTCCCCCGGGCAAGCACAGCCTG
AACACGACGCAGGAGGCCGGACGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013129.1\|WP_055644276.1\|2031147_2031867_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|273824
NZ_CP013129.1\|WP_055644266.1\|2041180_2042722_+\|peptidase-S8	unknown	unknown	gnl\|CDD\|173799
NZ_CP013129.1\|WP_099054270.1\|2029708_2030131_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_055646400.1\|2027149_2027353_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_055644264.1\|2044980_2046024_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|176247
NZ_CP013129.1\|WP_055644265.1\|2042817_2044158_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP013129.1\|WP_055644268.1\|2038895_2040536_-\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|271374
NZ_CP013129.1\|WP_055644272.1\|2036524_2036800_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP013129.1\|WP_055644281.1\|2022510_2025099_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP013129.1\|WP_055644277.1\|2030368_2031145_-\|enoyl-[acyl-carrier-protein]-reductase-FabI	unknown	unknown	gnl\|CDD\|236124
NZ_CP013129.1\|WP_055644279.1\|2027643_2028987_-\|CynX/NimT-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340897
NZ_CP013129.1\|WP_055646401.1\|2026595_2027114_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224973
NZ_CP013129.1\|WP_055644269.1\|2037729_2038731_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP013129.1\|WP_055644278.1\|2029050_2029776_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP013129.1\|WP_079037669.1\|2040532_2040907_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NZ_CP013129.1\|WP_055644270.1\|2037496_2037712_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_055644271.1\|2036969_2037314_+\|DUF3099-domain-containing-protein	unknown	unknown	gnl\|CDD\|378630
NZ_CP013129.1\|WP_055646402.1\|2021628_2022429_+\|lytic-transglycosylase	unknown	unknown	gnl\|CDD\|381605
NZ_CP013129.1\|WP_055644273.1\|2035176_2036451_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP013129.1\|WP_055644280.1\|2025296_2026511_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803

Protein	Function_ID	Function_description	E-value
NZ_CP013129.1\|WP_055644276.1\|2031147_2031867_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|273824	TIGR01830, 3-oxoacyl-_reductase_FabG, 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. [Fatty acid and phospholipid metabolism, Biosynthesis].	4.09223e-124
NZ_CP013129.1\|WP_055644266.1\|2041180_2042722_+\|peptidase-S8	gnl\|CDD\|173799	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.54126e-56
NZ_CP013129.1\|WP_055644268.1\|2038895_2040536_-\|cation-acetate-symporter	gnl\|CDD\|271374	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
NZ_CP013129.1\|WP_055644264.1\|2044980_2046024_-\|IMP-dehydrogenase	gnl\|CDD\|176247	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
NZ_CP013129.1\|WP_055644265.1\|2042817_2044158_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	1.29445e-34
NZ_CP013129.1\|WP_055644277.1\|2030368_2031145_-\|enoyl-[acyl-carrier-protein]-reductase-FabI	gnl\|CDD\|236124	PRK07889, PRK07889, enoyl-[acyl-carrier-protein] reductase FabI.	2.24681e-165
NZ_CP013129.1\|WP_055644281.1\|2022510_2025099_-\|FHA-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	9.43167e-73
NZ_CP013129.1\|WP_055644272.1\|2036524_2036800_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.11179e-05
NZ_CP013129.1\|WP_055644279.1\|2027643_2028987_-\|CynX/NimT-family-MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.30028e-125
NZ_CP013129.1\|WP_055646401.1\|2026595_2027114_-\|histidine-phosphatase-family-protein	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	4.97041e-47
NZ_CP013129.1\|WP_055644269.1\|2037729_2038731_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	2.71049e-177
NZ_CP013129.1\|WP_055644278.1\|2029050_2029776_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	4.26225e-52
NZ_CP013129.1\|WP_079037669.1\|2040532_2040907_-\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	2.58267e-35
NZ_CP013129.1\|WP_055644271.1\|2036969_2037314_+\|DUF3099-domain-containing-protein	gnl\|CDD\|378630	pfam11298, DUF3099, Protein of unknown function (DUF3099). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	1.14467e-19
NZ_CP013129.1\|WP_055646402.1\|2021628_2022429_+\|lytic-transglycosylase	gnl\|CDD\|381605	cd13402, LT_TF-like, lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	1.22601e-30
NZ_CP013129.1\|WP_055644273.1\|2035176_2036451_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP013129.1\|WP_055644280.1\|2025296_2026511_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	7.21225e-92

>NZ_CP013129.1|WP_055644276.1|2031147_2031867_-|3-oxoacyl-[acyl-carrier-protein]-reductase
MSRSVLVTGGNRGIGLAIARAFAEAGDKVAITYRSGEPPAALVELGCLPVKCDITVAEQVEQAYKEIEEKHGPVEVLVANAGVTKDQLLMRMSEEDFTSVVDTNLTGTFRVVKRANRGMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTAVLTDEQRAGIVSQVPLGRYAQPEEIAAAVKFLSSDDASYITGAVIPVDGGLGMGH
>NZ_CP013129.1|WP_055644277.1|2030368_2031145_-|enoyl-[acyl-carrier-protein]-reductase-FabI
MSGILEGKRILITGVLMESSIAFHTAKLAQEQGAEIILTAWPRPTLTERIAKKLPHPENVKVLELDVSNDEHLARLEGQVREQFGDRLDGIVHSIGFAPQDALGGNFLNTPFESVATAMHVSAFSLKSLTMALLPLMSEGGSVVGLTFDAKFAWPQYDWMGPAKAALEATSRYMARDLGKQNIRCNLISAGPLGSMAAKSIPGFGELAAVWDTRSPLQWELSDPEPAGRGVVALLSDWFPKTTGEIIHVDGGLHAIGA
>NZ_CP013129.1|WP_099054270.1|2029708_2030131_-|hypothetical-protein
MRAIRHGFGAFASVAVLLTGIAVAAEVRAAPAPAEELPAAAPPADEPENFGASCRTVVQGSRVTAYCQNPYPGTDRVRLHVECDRWWDVDTDSAPVDVGPADYAQISGRCWKEVRSAWVTHQPAEPEPAPAQEPAPVRGS
>NZ_CP013129.1|WP_055644278.1|2029050_2029776_+|FadR-family-transcriptional-regulator
MALGHPRRAGLSDQVIAELRNQITSGEWPVGSRIPTEPELVEQLGVARNTVREAVRALAHNGLLDIRQGSGTYVIATSELAGVMHRRFAGSDPRHVAELRSTLESAAARFAAERRTERDLKQLDALLVRREEAWESGDAERFVTVDAAFHHAVVAASGNDVLTELYADLGDLLRDWLRDDVGQELRPENHMDHARLVDAIREGDAERAGTEAAGYPFMCLKSPVPEPVPAPEPVPVPPAGA
>NZ_CP013129.1|WP_055644279.1|2027643_2028987_-|CynX/NimT-family-MFS-transporter
MPDEPKTLDPAPAPTPATATTTRNSSAPALASGFPQASASRWTLGLVTVGLVLAALNLRPAITSLGALLEEVSAGLHMSGTVAGVLTSVPPLCFAVFGITAPRLARRFGPVAVVCAGMAAIFAGLAVRPFASGTAGFLAASALALMGIALSNVLMPVIVKRYFPDRVGTMTGLYSMALALGTSVAAAATVPMTEALGGDWRAGLGVWAVVAALAVLPWIPLLRDRDRDRGGLPTRAGRATGKATASAVPLDTAPAPRVTRSRTAWALGCFFGLQATGAYITMGWMPQIFRDAGVPASTAGVLLAVTMVMGVPLAFVIPRLATRMKTQGPIVVALGLCGLGGYTGLFFAPASGAWIWAVLLGVSNCAFPLALTMIGMRSRTGAGVVRLSAFAQSVGYLISIPGPLLVGVLYQHSGGWGLPIALMGGLMVPQMIIGTLAGRDRTVEDEC
>NZ_CP013129.1|WP_055646400.1|2027149_2027353_-|hypothetical-protein
MSARTDTSTRPMPTRVDTRLPWWALALPVAAFVALLLLIAGPGGAQATADDQGVGRVLVQLQQTLAP
>NZ_CP013129.1|WP_055646401.1|2026595_2027114_-|histidine-phosphatase-family-protein
MSVDTPRRIALLRHAKADWNQESDHERPLADRGRADAPVVGRRLAETGIGFDLALCSTALRTRETWKLAVHELPERPRTVYEERLYEASLGELIALINETPEDVDDLLLIGHNPGMHALADALAGEAEGDVQSRMNRSGFPTSAFAVLTFNGSWKSVELGVARLSHFWAPHA
>NZ_CP013129.1|WP_055644280.1|2025296_2026511_+|phosphoserine-phosphatase-SerB
MSASQTSDVPTLLVKIFGKDRPGITAGLFDTLAAYSVDVVDIEQVVSRGRLVLCALVTEPTVASQGELRATIHSWAESLKLQAEIISGTGDNRPRGEGRSHVTVLGNPLTAEQTAAIAARIAESGGNIDRIFRLAKYPVTAVEFAVSGCETEPLRTALATEAHTIGVDVAVVSAGLHRRAQRLVVMDVDSTLIQDEVIELFAAHAGCEDKVAEVTAAAMRGELDFEQSLHARVELLAGLDASVVDKVRAEVRLTPGARTLIRTLKRLGYQVGVVSGGFTQVTDDLKERLGLDFASANTLEIVDGKLTGRVTGEIVDRAGKARLLRRFATEAGVPLAQTVAIGDGANDLDMLNAAGLGVAFNAKPVVRRAADTAVNVPFLDTVLYLLGITREEVEVADGGEDLLH
>NZ_CP013129.1|WP_055644281.1|2022510_2025099_-|FHA-domain-containing-protein
MGLGVPELVLELNGRTWTLDPSRSYTLGRDPQGDLVIDDARVSWRHATISWGGRSWVIEDHGSTNGTFVQGQRIHQMEIGPGSAVNLGNATDGPRLNLAASGAAAVPQQQAPAHQAPAHQPAAAAQADWATHQAPPQQQGWPQQGAQGGHAPAHQQVPHQQGPAGYPGQGGPVEQLAQKVPGGGPAGASSAYSDRSPTTFHALNLGHVMRIGRALENELVVSDLQVSRHHADFHATPDGRFEIRDLGSHNGTYVNGQPIPKGGSAVLGPQDIVGVGHSTFRIVGGQLEEFVDTGSVSFSARHLTVTVDGGKQILRDVTFGVPEKSLIGVIGPSGSGKSTLLKALTGYRPANEGDVLYDNRSLYKQFAELRQRIGLVPQDDILHKELTVVKALRYAAKLRFPGDTATAEREARIDEVLRELKLDIHKEKKVTSLSGGQRKRVSVALELLTKPSLIFLDEPTSGLDPGMDRDVMQLLRGLADDGRTVLVVTHSVAELGLCDKLLVMAPGGSVAYFGPPEEALNFFGYSTWADVFSAFENYRDYDWAGRWKGSQHYQMYAADIDAVAAQPVQMPQQAMARPPKPQGWGSQLWTLIRRYVSVIASDKGFLGLMVILPAVLGAVSVVIPADFGLGSPTPPSRFNGDAGTIMLILAVGMCFSGAANSVRELIKERVIYERERATGLSRSAYLMSKVIVLGLITAFQGVIICGIGFSTRALPAEGLFMPPAVELCIQVIALGLTSMMFGLVISALVKTAEKTMPLLVMFAIIQVVFTGILFQVYGSPGLEQFAWLMPSRWGIAGAGTTLDLARLMPPWDHKNPTDTDPLWEHTVGQWSLDLGIQLLMAVVCCVVVARLLRRHEPEVMRK
>NZ_CP013129.1|WP_055646402.1|2021628_2022429_+|lytic-transglycosylase
MMSANTPGHSRGLKKTHKATIAGVAALSAAALTLSLVQGNGGSTETEPQALSGTQQVAWSYNAASPQAKALAASVTEQQTTIGLKAKQEAVAKAAAKAKADAKAKADAQAAAKAKAAAKAKADAQAAAKAKAAAKAKADAKKRAAEKAAASRSVARTPVFANNLDGWIREALFIMDKHNIPGTYNGLHKNIMRESSGNPRAINNWDINAINGVPSKGLLQVIYPTFKAYHIPGTKFDQYDPVANLVAAANYAADRYGSIDNVNSAY
>NZ_CP013129.1|WP_055644273.1|2035176_2036451_+|tyrosine--tRNA-ligase
MTDIVDELKWRGLFAQSTDEDALRKALADGPVTFYCGFDPTAASLHVGHLVQVLTVRRLQQAGHRPLALVGGATGQIGDPRPTAERTLNDPETVANWVNRLRSQIEPFLSFEGENAAVMVNNLDWTAGLSAIEFLRDIGKHFRVNKMLTKDSVARRLESEQGISYTEFSYQLLQAMDFLELYRRYGCVLQQGGSDQWGNLVAGLDLIHRLEPGADVHALATPLMVKADGTKFGKTEGGAVWLDPEMTTPYAFYQFWLNVDDRDISTYMRILSFKSREELEELEAQTAERPQARAAQRALAEELTTLVHGAEQCAAVINASKALFGQGDLAELDGATLAAALSELPHARVTELGQVVDLFTEVGLAPSKSGARRTVKEGGAYVNNVKVTAEDAEVSADELLHGRWLVLRRGKKNLAAIEFAGAEG
>NZ_CP013129.1|WP_055644272.1|2036524_2036800_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MSWLWAIIVGFVLGLIAKAILPGKQQIPLWLTTVFGILGSVLGNAVATWIGVEDTKGIDWTRHLLQLIGAVAVVGVGDMIWDSIKGNRQRA
>NZ_CP013129.1|WP_055644271.1|2036969_2037314_+|DUF3099-domain-containing-protein
MTKRGETEVFRITGARQGLADDVRGRQRRYIISMTVRTLSVIAAAVLWNVERHVAIVALALGILLPYIAVVIANAGRESAPSLPSTFVPAPVRPALGSAEAAEGAGAETPYGRN
>NZ_CP013129.1|WP_055644270.1|2037496_2037712_+|hypothetical-protein
MSEEKPICSAKGCRVDAVWVLAWNNPKLHTPERRKTWLACDEHREHLSQFLGVRGFLKDVVPLSEWEPTEG
>NZ_CP013129.1|WP_055644269.1|2037729_2038731_-|GTP-3',8-cyclase-MoaA
MLIDTYGRVATDLRVSLTDRCNLRCTYCMPEEGLQWLAKPDLLTDDEIVRLIRIAVTDLGVTEVRFTGGEPLLRPGLVGIVERVAALEPRPRMSLTTNGIGLKRTAAALKAAGLDRVNVSLDTLRPEVFKTLTRRDRHRDVLDGMAAARDAGLTPVKVNAVLMPGLNSDEAPDLLAWAIEEGYELRFIEQMPLDAQHGWKRDGMITAGDILESLRTRFTLTAEGADERGSAPAERWVVDGGPHTVGVIASVTRPFCRACDRTRLTADGQVRTCLFATEETDLRAALRAEESSPAADEVVAELWKKAMWGKKAGSGLDDPSFLQPDRPMSAIGG
>NZ_CP013129.1|WP_055644268.1|2038895_2040536_-|cation-acetate-symporter
MSSTVLLAAGNATSEHRPLIIALFGAFVVATLIITVWAGRQTRSAADFYAGGGQFTGFQNGLAISGDYMSAASFLGISGAIALYGYDGFLYSIGFLVAWLVALLLVAEPLRNSGRFTMGDVLAYRMRQRPVRTAAGTSTIVVSIFYLLAQMAGAGVLVSLLLGITSDGGKIAIVALVGILMIVYVTIGGMKGTTWVQMVKAVLLIAGTLLITFLILLKFNFNISELLGAAATNSGKGDAFLDPGLKYGASALSKLDFLSLGIALVLGTAGLPHILIRFYTVPTAKAARKSVNWAIGIIGAFYLMTIVLGFGAAALLSGDTIKASNKAGNTAAPLTALEVGGGAGSTGGAILLAVISAVAFATILAVVAGLTLASSSSFAHDIYANVIKRGKATEKEEMRAARWSTVLIGIVSIALGALARDLNVAGLVALAFAVAASANLPTILYSLFWKRFTTQGALWSIYGGLISSVVLVLFSPVVSGGPASMFKGVDFHWFPLENPGLVSIPLGFLLGWLGSLLSKEEPDAGKYAELEVKSLTGVGVAAAIKH
>NZ_CP013129.1|WP_079037669.1|2040532_2040907_-|DUF485-domain-containing-protein
MATEAPPPPRNATETDHGPVPPTTEQFVEVQQGEEFGELRRTYRSFAFPLTLAFIAWYLLYVLLSNYAGDFMSTRLFGNINVALVLGLGQFLTTFLIAWLYSRHAANSLDPRAEAIRNRMEGDA
>NZ_CP013129.1|WP_055644266.1|2041180_2042722_+|peptidase-S8
MAHLGSRRGRALALPAGLALTASLGFLPSGAASAAELSDAPAAAVAATNGPKLSYVVNVAGGRWTAASVKKAIAAAGGEVVIAYDQIGVIVVHSQNPEFAKTIRQARGVVSAGSTRTAPLSAQADASVDEGAQTLTAAEAKAAAATATDEQDPLEPLQWDLPAIKADKAHQKTLGSKRVTVGVIDTGVDDTHPDLAPNFDVKASANCVTGKPDTTPGSWRPNPGESDHGTHVAGTIAAAKNGVGVTGVAPGVKVSGIKVSTPDGFFYTEAVVCGFVWAAEHGVDVTNNSYYTDPWMFACKNDEDQKALIEAVTRASRYAEKKGTVNVAAAGNSKFDLAADSILDNSSPNDTTPGDRVIDPKVCLDYPGMLPGVVTVSATGAKDLKASYSNYGLGVIDVSAPGGDRTEYQTPDAPAVNGRILSTTVNGGYNYKAGTSMAAPHAAGVLALIKSTHPYASPAALKALLYAQADDRACTNPYDIEGDGKIDAVCEGGKNKNGFYGAGLIDALDAVRR
>NZ_CP013129.1|WP_055644265.1|2042817_2044158_+|CoA-transferase
MDNTPRSGTELLWSVLGGDPALVDHVEYGGTSGLLPARLPVMDLARATVAVCSLAAVEHAGLPGPVRVDDGAVATAFVSERHLRVDGRAPVNFAPLSRFWRAADGWVRTHANYPHHRVALLAALGVGDPVEAVATGEAVDAVDAVDAVAAAIGERKAVEVESAVYAAGGLAVALRTPSEWAEHPQGREVAARPLLSRERLDDAPPRRRSGPLRVLDLTRVIAGPVATRTLALLGADVLRIDPPGNPELPDQHADAGVGKRTAALDLERPSDRRTLDELLDSADVLVTGYRPGALDRFDLDRPGLVTARLSAWGDYGPWGERRGFDSLVQVATGIAVTEGSAEEPGALPAQALDHGTGYLLAAAVLRSLTEQRAEGGSRLVRLALAQTGHWLTTALPRYEPERYLAESEGPLGRLRHALSPVSYEGGPTGWSRPPGVAGADAAEWRG
>NZ_CP013129.1|WP_055644264.1|2044980_2046024_-|IMP-dehydrogenase
MRATTIHAPFDMRVEDVPDPVIQDSTDVVLRVLRACICGSDLWAYRGESARQPGQRIGHEFLGIVEAAGSDVTGFAAGDLVVAPFVWSDGTCEYCAEGLQTSCPRGGFWGSVGSDGGQGEAVRVPFADGTLVKLPADAASDDHLLTALLALSDVLGTGHHAALGAGVKPGSTVAVVGDGAVGLCGVLAAKRLGAERIIALGRHTARTDIARAFGATDVVAERGEAAEAAVRELTGGQGAHGVIEAVGTEQSMRTAVAITRDGGSIGYVGVPHGSGTGLDLSVMFDRNIALRGGVAPVRAYIPELLPDVLAGTIDPSPVFDLTVDLNGVPAGYKSMDDRTALKVLVKP

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Crispr_ID: NZ_CP013129_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013129_2

2938599-2938703

Orphan

Consensus_repeat	Method
TGCTCTGCCAATTGAGCTACAGGGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013129_2

>merge|NZ_CP013129|2|2938599-2938703|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGGGATCGCGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGCTGCTCTGCCAATTGAGCTACAGGGGAT

>NZ_CP013129|2|2|2938599-2938703|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGGGAT	CGCGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGC
TGCTCTGCCAATTGAGCTACAGGGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013129.1\|WP_033248701.1\|2935101_2935362_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373076
NZ_CP013129.1\|WP_055643592.1\|2950193_2951513_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|235098
NZ_CP013129.1\|WP_055643603.1\|2931079_2931409_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_055646305.1\|2944502_2945771_+\|tellurium-resistance-protein	unknown	unknown	gnl\|CDD\|376767
NZ_CP013129.1\|WP_055643602.1\|2931615_2932362_-\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NZ_CP013129.1\|WP_055643597.1\|2938837_2939149_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_055643596.1\|2940739_2942473_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013129.1\|WP_055646306.1\|2934589_2934970_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP013129.1\|WP_055643594.1\|2946894_2948787_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP013129.1\|WP_055643591.1\|2951548_2952328_-\|sirohydrochlorin-chelatase	unknown	unknown	gnl\|CDD\|225049
NZ_CP013129.1\|WP_055643600.1\|2933334_2933970_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379158
NZ_CP013129.1\|WP_057950457.1\|2932919_2933345_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_099054420.1\|2933997_2934594_-\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|368753
NZ_CP013129.1\|WP_055643599.1\|2935336_2936500_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|235717
NZ_CP013129.1\|WP_055643595.1\|2942472_2944413_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013129.1\|WP_055646304.1\|2945767_2946769_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|235640
NZ_CP013129.1\|WP_055643593.1\|2948816_2950076_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|170080
NZ_CP013129.1\|WP_057950458.1\|2939198_2940638_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|198375
NZ_CP013129.1\|WP_055643598.1\|2936972_2938208_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP013129.1\|WP_055643604.1\|2929210_2930986_-\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|214678

Protein	Function_ID	Function_description	E-value
NZ_CP013129.1\|WP_033248701.1\|2935101_2935362_+\|hypothetical-protein	gnl\|CDD\|373076	pfam14452, Multi_ubiq, Multiubiquitin. A ubiquitin superfamily domain that is often present in multiple tandem copies in the same polypeptide. Members of this family are associated in gene neighborhoods, or on occasions fused to, bacterial homologs of components of ubiquitin-dependent modification system such as the E1, E2 and JAB metallopeptidase enzymes and a distinct metal-binding domain. The E2/UBC fold domain appears to be inactive. The JAB domain in these operons is usually fused to the E1 domain.	3.78714e-15
NZ_CP013129.1\|WP_055643592.1\|2950193_2951513_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NZ_CP013129.1\|WP_055646305.1\|2944502_2945771_+\|tellurium-resistance-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	4.64755e-24
NZ_CP013129.1\|WP_055643602.1\|2931615_2932362_-\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	1.90042e-07
NZ_CP013129.1\|WP_055643596.1\|2940739_2942473_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	7.68883e-165
NZ_CP013129.1\|WP_055646306.1\|2934589_2934970_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	4.47699e-06
NZ_CP013129.1\|WP_055643594.1\|2946894_2948787_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP013129.1\|WP_055643591.1\|2951548_2952328_-\|sirohydrochlorin-chelatase	gnl\|CDD\|225049	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism].	6.07198e-30
NZ_CP013129.1\|WP_055643600.1\|2933334_2933970_+\|HNH-endonuclease	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	0.00282774
NZ_CP013129.1\|WP_099054420.1\|2933997_2934594_-\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	5.42446e-11
NZ_CP013129.1\|WP_055643599.1\|2935336_2936500_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|235717	PRK06153, PRK06153, hypothetical protein; Provisional.	3.2621e-158
NZ_CP013129.1\|WP_055643595.1\|2942472_2944413_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP013129.1\|WP_055646304.1\|2945767_2946769_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	1.6979e-160
NZ_CP013129.1\|WP_055643593.1\|2948816_2950076_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	4.99182e-73
NZ_CP013129.1\|WP_057950458.1\|2939198_2940638_+\|sugar-kinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	3.86813e-117
NZ_CP013129.1\|WP_055643598.1\|2936972_2938208_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.17405e-33
NZ_CP013129.1\|WP_055643604.1\|2929210_2930986_-\|chromosome-partitioning-protein-ParB	gnl\|CDD\|214678	smart00470, ParB, ParB-like nuclease domain. Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5-->3 exonuclease activity.	5.93575e-07

>NZ_CP013129.1|WP_055643598.1|2936972_2938208_-|site-specific-integrase
MAYIKTNSRLSGAPSYTVMWRAGGSRTGAWCRETFDDDDPAKRFRDLVNGHGQQWPPGWVKGEGFVEANEPPLPDSEKFAVYAHAYVGLLTDISEHTRTNYTRFIDNHMIPWFGELSVSDRGSRLTRNHVSQWILDLQNGRPGPLHPAGTKRRAYAPKTIANFHGLLYSIFQSAVSADPALRDSNPCAHTRLPKGNDTEDDEVFLEPEEYALLKTHVRADAVDIVDALVSTGLRWGEITALQPRDFTFASKRPTLRVQRAWKRRGEGGTFLGAPKTKKSRRTLVLTPEQVKLFQRRCRGKKPTDLIFTAPEGGAWHSGVFYAHRWKPAIDAANAVGLTKRPRVHDLRHTHASWLIAGKVPLPVIQARLGHESITTTVDRYGHLLEASDDEVVAAVEWAMGATIPDAMTQAA
>NZ_CP013129.1|WP_055643599.1|2935336_2936500_+|ThiF-family-adenylyltransferase
MSTALLARDPDLSRLLDDGYNVVLQAGHIIVQIPYVTESRTVEHGFLAHPVTVAGDRLVSETDHRIWFGGSTPCDERGRPLTVANPDPREIAGGRQANFMLSSKPPDGYPDQYAKITAYVRIVADHAHALDSSATPTPGAAWQEIDDDSPFAYRDTATSRAGISAVNRRFRGHRVVIIGLGGSGSYILDQVAKTEVDSILLIDGDTFDNHNAFRAPGAAALDTLRERPLKATYFAAVYANMHQGVAACPKYLDEDNLDLLEGATFAFLASDDAASKPAIIGWLEAHEVPFIDVGMGIEEIDGRLSGLLRITTSLPGRRDAARDRIPRSATERDAYASNIQTADLNALNAVLAVIRWKRSLDIYADATGESHTTYSLITNEIANEDLP
>NZ_CP013129.1|WP_033248701.1|2935101_2935362_+|hypothetical-protein
MPQENQGPKPVTIIVNTRPHVWEAKEITYKQVVELAYPGQPPNDQDTYTVRYSRGHDGHGTGSLTDGHDVRVKKGMVFDVYRTSRS
>NZ_CP013129.1|WP_055646306.1|2934589_2934970_-|XRE-family-transcriptional-regulator
MSESPGVNVQTLHAALDAARTEKGLSWRQLAKELGVSASTISRMANGLKPDVSAFAAMTTWLRMPAETFYVSSEGESAKGDPELVASLVPLLRARSDLSGDDVAYLEEVIGAAARRFRAERESRGH
>NZ_CP013129.1|WP_099054420.1|2933997_2934594_-|ImmA/IrrE-family-metallo-endopeptidase
MKLRWTQALMREVAQEERAGLGLGPKDPLDPYVLAEEHGIGVYTLEDLQKFEMTAVALQHFTVSSSSVWSAALVPLGTARVIVENESHILVRRRSNIAHELGHHLLEHSFDGVILGEDHKRQFNPEQEKQATFMAGELLVPLAAAQRMAYDGWDNARVAAAYVVSEQFAQMQMKGPRVRAQRAAQKYGFSSSTGRARP
>NZ_CP013129.1|WP_055643600.1|2933334_2933970_+|HNH-endonuclease
MPPENNIGPGLFPLAAVNGSGPVHVDEQLSLIGEPTPVRIPAVEWMSWLANESVQARYWAKVYRTSSTEDCWFFFGGISSTGHASFRAASRPGRTRRGTVPGHLYGYQLAHGVIPRLGWGTDSPTVCHTCDNHSCQQPAHLRLGTPAENRAEWLARRHDPRSPLADLRGPAHRSRAIGAAIRAGQAHDESEEEIARRIKAAVAAGRPLSLW
>NZ_CP013129.1|WP_057950457.1|2932919_2933345_+|hypothetical-protein
MSASELRRRVRAAEAVKARTREMAAEHALTAREAAVKAAKAKEEADVTAREAAAVVLRLFDNDAELVSELLGVPAEELEREAKPVTAARAKEIIESLRARAERPRTTRIRKPRTDAADAASSTSGAPAPVVTADDSRADAA
>NZ_CP013129.1|WP_055643602.1|2931615_2932362_-|DUF2786-domain-containing-protein
MNVSTTKAPAKLETIRALLAKAEDPRTPEAEAELARKRAFEMMAKYGVEQAMLNDANPASDAPTDRKIVLDNPWAMERVRLINRIALALGCELIHLGRDGSGPARRVHIFGYASDLQRVELLYTSLLLQMNSGLAAQSVPPGQGARAWRRSWLLGFINRVGDRIEEAERGARDEAKGETTATGRSAVLVLADRKAVVSRSYQQAYPRARKGGTTTMTGNGYGAGWTAGSRADIGGKQIGRTMAGSIAA
>NZ_CP013129.1|WP_055643603.1|2931079_2931409_-|hypothetical-protein
MLHAWERGVRSVRPRWSVRGEPWNIFQRALFDSLVVLSNQVNGRPVSGVRWRKLRLTEDAYRRTLLWCWGDEPERTTAEAAAMIRAAAALHPSDGDHNLPGCPNLKNMV
>NZ_CP013129.1|WP_055643604.1|2929210_2930986_-|chromosome-partitioning-protein-ParB
MTNTKTQAGVQTAPAPWPTLTVAELAAHPGNVRDIEAPADLLADVKDNGVVEPLYVVRTHGDVPQVIDGFQRLAAAVAAGLEAVPVTPRPVIRIDALTPHPKNAREDLDLNAPFVESLRTEGCRIPVKIQRLDGGVLQVNDGNRRYHAATDAGLTHVPYEWEDDDRDAAGQFLDMITTAQHRKSLSTSEVNQAMFSAAEAGAQVGRIAKAAGVRQKDVKTLVKVRSDEKLSAVVSGASSCEWTFEHLAALSEFADDAEALAAITEAAADDDADEGDVDWVIAVERTKRDKRTKAEAHRAELEAAGQKIRDAEELSERAMPVWRLRGISTEEHADCKGLVWVFDDRRADRYEPYCSAPGLYGHTVPEGASASGGTMTTADKEAERAARAAVKKGNIDWDAAEALRRKWITDLIKRRNLPKNTTNTLIGHVNNALLNGSWGISDDLNKEGTTEILAGFLGLNAEQAKDRGSFAGHVAKDPRRAPQLQFAAIAAVREKCANRSAWRTDSQHAPWTRKPTGRWFQVLASLGYPLTPIEQSVVDEEPYDPSKKKPRAAITSGSEPETEQEPGTNEEAGEPEAEEADDPASDDEAAA
>NZ_CP013129.1|WP_055643597.1|2938837_2939149_+|hypothetical-protein
MRYKLTFVVGLALGYVIGTRAGRERYEQMKKSAREFAQNPAVRNAAESAAQTGRQVAGKAMHAVGDTVGDRLPSSVTDRVHALRDRGRSNGRVEDDDWGTSNT
>NZ_CP013129.1|WP_057950458.1|2939198_2940638_+|sugar-kinase
MGIVAGLDSSAGFTRIVVCDADTGAVLRQGYAPHQGDPKAAEVDPQTWLLSLGEAATGGLLEGVQAIGVSAQQHGLVPLDAQGALVRPALVGNDKRAQVAAADLAESLGGRQAWAEAVGCVPGSGQPVAKLRWLARTEPENAQRTALVLQPHDWLVWQLLGRPARRTTDRGAASGTGYWSARTGAYRPDLVELALGHQAVLPEVLGPAEAAGTTPEGLLISAGTGETMAAALGLGLGHGDAVVSLGASGSVMAVHHEALADPTGMITSFADAAGMHLPVVHTSNAVRALRGTAEMLGVESLDELSALALKSTPGASGLVLLPYLEGERTPSLPHSAGTLSGLRRESMKPEHLARAAFEGMLCALTDAMDVLRGRGVEVRRVFLLGAAAALPAVQALAPALFGAQVVVPQPADYAALGAARQAAWALGVARGTLSPSAPPAWQGAAAQVLEAGEELAVGQAVRQQYVATREQIHPGAFGA
>NZ_CP013129.1|WP_055643596.1|2940739_2942473_+|ABC-transporter-ATP-binding-protein
MLIRLLRTHLQPYRKPIALLVLLQFLQTCASLYLPTLNADIIDNGVVNGDTGYILRFGALMVGVSVVQVVCNIGAVYYGARTASALGRDVRGAIFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVMALGQDVPLSAVLLAVVPVLGVSVTLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVKDGYEEERFRRANADLTDVSMATGRLMALMFPVVMTVVNVSSVAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLATESSVVPPAEPVTELDRRGHLEVRSADFRYPGAEESVLKDVGLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATGGEVLVDGVDVRKLDPVLMAKTVSMVPQKPYLFSGTVATNLRYGKPDASDEELWHALEVAQAADFVRKLENGLNAPIAQGGTNVSGGQRQRLAIARTLVQKPEIYLFDDSFSALDYETDALLREALRRETADSTVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHGELMAENETYREIVLSQLTEAEAA
>NZ_CP013129.1|WP_055643595.1|2942472_2944413_+|ABC-transporter-ATP-binding-protein
MAGPGGRMMAGGGPDQRSMDFKNSGKRLLKQLAPERATLWVMLLAGVLSVAASVVGPKILGKATDLVFAGVVGRRFEGGTKAEAIEGLRAGGDSGMADMLSGVDFTPGQGIDFGAVGEVLLWALAIYVAAGLLMLVSTRLSIKVINRTVFRMREDVQTKLARLPLSYFDKAKRGEVLSRATNDIDNISQTLQQSMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVAAKIGKRSQPHFVQQWKSTGTLNAHVEEMYTGHNLVKVFGRQEESAKDFREQNEALYEAGFKAQFNSGVMQPVMFFVSNINYVLVAVVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEPDAPRSEEQQDLGPTELKGRVALEDVSFRYEADRPLIEDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGTDIAKMSREDLRKGIGMVLQDTWLFGGTIADNIAYGTTRKVTREEIEEAARAAHVDRFVRTLPEGYDTVIDDDGAGVSAGEKQLITIARAFLSDPVILVLDEATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLLSGGAYARLYAAQFAQAVAEVD
>NZ_CP013129.1|WP_055646305.1|2944502_2945771_+|tellurium-resistance-protein
MVGIGNADIAALLLGADGRVRGDADMVFEGQPVHPSGAVKHTKKSLSLALHEVEPEVERIVIAGPATSGSLAAMAPDRAVVVAWLIARPDDAEAVVYGEFFRESGGWKFTGIGKGYASGLAELVTAYGVEVEAEKEVEQPVAVPANGPVPLTGVAKAPGQTPSRSLAQSPWQALAAPSAPARKAGEAGGAPAPTASPAPTTAPAPTTAPVPTAYPPVERPYELVEGWEFGPLFEPFTASGKGGEVVTVDGRVPPGPVLVEAAHEGEDYFGVFSLNKFNKDDDYLFNTTLPHFTGSSVIRAPGDRSLRLRVHANSRNRWALRVSPVAAARRLTGSLRGYGPEALLFTGGAADLRVHFEGKEDGSGYIGMWCHEVAGRTTLLTHPDLIMNATGPLVHTVPIPPGPLLLLFSADGPWTLTVREIG
>NZ_CP013129.1|WP_055646304.1|2945767_2946769_-|RNA-polymerase-sigma-factor
MQTTEQDEPAELPEAPEVPPQRRRADLGGNGPSSDLFRQYLREIGRIPLLSAEEEVELARRVEAGLFAEEKLATTPDLDSRLASDLDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVIRVQRRMLQERGYEPTAEEVAAQLDLAPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRRHLEDVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLGKLRDHAYADQLRGYLD
>NZ_CP013129.1|WP_055643594.1|2946894_2948787_-|DNA-primase
MAGRINDDDVKAVRDAVPIDAVVSEYLQLRNAGGGNLKGLCPFHDEKSPSFQVSPSKGLFHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAKAGITLRYEEGGYNPGHQRGERIRLVEAHKVATQFYIDQLDSPEAEIGRKFLAERGFDQAAAAHFGVGYSPAGWDHLTRFLRGKGFSDKELILSGLSQDGRRGPIDRFRGRLMWPIRDVGGDVVGFGARKLRDDDNGPKYLNTPETPIYKKSQVLYGIDLAKKDIAKVSRAVVVEGYTDVMACHLAGVTTAIATCGTAFGGDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAAETYIAIAPDGMDPCELRLAKGDEAVAELVQPRTPLFEFALRQIVKRYDLETPAGRAAALDEAAPVVARIKNIGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARDRGGKGPAQQQPGQRGYDTPAPQAAPAGPALNLRSPAHRTERELLKLALQRPELVSPAFDAYGIDEFTAPPYAAVRQCVQDAGGATGAPSDYLDTVREAAPNDTVRALVTELAVETIFAKTIDEVYAGAQLVQVRLRAVDRRIRDVQGTLARLGAHGDPEQLAAVQNELWVLTQYGQSLRNNGADAL
>NZ_CP013129.1|WP_055643593.1|2948816_2950076_-|FAD-dependent-oxidoreductase
MVDADQTFVIVGGGLAGAKAAETLRSEGFNGRVILIGDERDHPYERPPLSKGYLTGAKERDSVFVHEAAWYAAHDIELHLGQAVTAVDREARTVRLGDGTVIRYDKLLLATGAEPRRLDVPGTELAGVHHLRRLAHADRLRQVLAALGRDNGHLVIAGAGWIGLEVAAAARAYGAEVTVVEYEPTPLHRVLGPELGQLFADLHSDHGVRFHFGVKLTEIVGQDGMVLAVRTDDGEEHPAHAVLAAIGAAPRTALAENSGLALVDRADGGGIAVDASLRTSDPDIYAAGDVAAAHHPSLHTRLRVEHWANALNGGPAAARAMLGQLVSYDRVPYFFSDQYDLGMEYSGWAPPGTYDQVVVRGDTGKREFIAFWLKEGRVLAGMNVNVWDVTEPIQQLIRSKATVDPEALADPSVPLENLI
>NZ_CP013129.1|WP_055643592.1|2950193_2951513_-|deoxyguanosinetriphosphate-triphosphohydrolase
MEGITDTSGQDTTTDTPGYDSSATERWAAEPDKRPGRTAFQRDRARVLHSAALRRLAGKTQVVTPGTRSHAWDASPRTRLTHSLECAQVGRELGAALGCDPDLVEAACLSHDMGHPPFGHNGEQALNDVAKDCGGFEGNAQSLRLLTRIEPKRFVKDADGELVSVGLNLTRAALDAATKYPWPRGGHPEDPGSPKFGVYEDDLPVFAWIRQGAPAHRKCFEAQVMDWSDDVAYSVHDFEDGLHAGHIDPNMLFAEPERADIWTVAIGRYVPEDTDPQELAEALDRLVDQEWWPHGYDGSAVAQARLKDATSQLIGRFCLAAEGATREAYGSGRLTRYAAELVVPREARNECAVLKAVADRYVMQRAEQEVLRADQRVVVAELAEALVARAPDGLEPQFRAAFDAARDDRARKRVIVDQIANLTDAAARALHRRLRPHHA
>NZ_CP013129.1|WP_055643591.1|2951548_2952328_-|sirohydrochlorin-chelatase
MTQEPKTTSDSGAATLVAVGHGSRDPRARATLGRLLDRVRELRPGLDVRLAHIELNAPLLDETLADLAAEGRDAVLVPLLFAPGHHVTHDLPATLAATPALRARIARPLGAHPLLVEALAGRLAEAGWTPEDGTSRATGVVLASAGSRDPRSGAEIRRIAALLGERLGGVPVVPAYASAAAPTVPEAVRALAARGRHRVAVASCFTAPGLFATRAAAHAPWLAAAPLGAHPALARLVLHRYEQARTARTTTPVRELAAI

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Crispr_ID: NZ_CP013129_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013129_3

4219486-4219588

Orphan

Consensus_repeat	Method
CCGCCGGCCGCGACGGACCGGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013129_3

>merge|NZ_CP013129|3|4219486-4219588|CRISPRCasFinder
CCGCCGGCCGCGACGGACCGGTCCCCCGAGGCGGATACGCCCCCGCTCACGCGTCGCCCGTGGACACGCTCCCGATGTCGCCGCCCGCCGCGACGGACCGGTC

>NZ_CP013129|3|3|4219486-4219588|CRISPRCasFinder
CCGCCGGCCGCGACGGACCGGTC	CCCCGAGGCGGATACGCCCCCGCTCACGCGTCGCCCGTGGACACGCTCCCGATGTCG
CCGCCCGCCGCGACGGACCGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013129.1\|WP_055642674.1\|4207861_4208893_+\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP013129.1\|WP_055642666.1\|4222052_4222712_-\|DUF5063-domain-containing-protein	unknown	unknown	gnl\|CDD\|374737
NZ_CP013129.1\|WP_055642660.1\|4228692_4229166_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP013129.1\|WP_055642672.1\|4209250_4210081_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP013129.1\|WP_055642673.1\|4208942_4209254_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_024760130.1\|4216213_4217485_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_CP013129.1\|WP_055642662.1\|4226559_4227924_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235687
NZ_CP013129.1\|WP_055642664.1\|4224923_4225574_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_055642663.1\|4225767_4226475_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP013129.1\|WP_055642669.1\|4215149_4216217_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP013129.1\|WP_055642661.1\|4228090_4228696_+\|thiamine-biosynthesis-protein-ThiJ	unknown	unknown	gnl\|CDD\|153234
NZ_CP013129.1\|WP_055642671.1\|4212011_4212752_+\|SURF1-family-protein	unknown	unknown	gnl\|CDD\|376731
NZ_CP013129.1\|WP_017240166.1\|4222756_4223356_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP013129.1\|WP_079037529.1\|4224024_4224765_+\|SLATT-domain-containing-protein	unknown	unknown	gnl\|CDD\|375613
NZ_CP013129.1\|WP_055642675.1\|4206151_4207549_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_079037530.1\|4223436_4223772_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP013129.1\|WP_055642670.1\|4212894_4214160_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368370
NZ_CP013129.1\|WP_079037531.1\|4214156_4214885_-\|SigE-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|132028
NZ_CP013129.1\|WP_055646192.1\|4210152_4211988_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP013129.1\|WP_055642667.1\|4220025_4222017_-\|tetratricopeptide-repeat-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013129.1\|WP_055642674.1\|4207861_4208893_+\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	6.00313e-15
NZ_CP013129.1\|WP_055642666.1\|4222052_4222712_-\|DUF5063-domain-containing-protein	gnl\|CDD\|374737	pfam16702, DUF5063, Domain of unknown function (DUF5063).	1.09318e-49
NZ_CP013129.1\|WP_055642660.1\|4228692_4229166_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	1.10248e-11
NZ_CP013129.1\|WP_055642672.1\|4209250_4210081_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.01349e-11
NZ_CP013129.1\|WP_079037530.1\|4223436_4223772_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	4.79465e-36
NZ_CP013129.1\|WP_055642662.1\|4226559_4227924_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235687	PRK06062, PRK06062, hypothetical protein; Provisional.	0
NZ_CP013129.1\|WP_055642663.1\|4225767_4226475_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	8.31615e-27
NZ_CP013129.1\|WP_055642669.1\|4215149_4216217_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	1.19725e-116
NZ_CP013129.1\|WP_055642661.1\|4228090_4228696_+\|thiamine-biosynthesis-protein-ThiJ	gnl\|CDD\|153234	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	9.5019e-60
NZ_CP013129.1\|WP_055642671.1\|4212011_4212752_+\|SURF1-family-protein	gnl\|CDD\|376731	pfam02104, SURF1, SURF1 family.	3.11176e-31
NZ_CP013129.1\|WP_017240166.1\|4222756_4223356_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	1.07483e-123
NZ_CP013129.1\|WP_079037529.1\|4224024_4224765_+\|SLATT-domain-containing-protein	gnl\|CDD\|375613	pfam18183, SLATT_2, SMODS and SLOG-associating 2TM effector domain 2. The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is the only prokaryotic SLATT family to exist as a standalone domain, with no as-yet discernable genome associations.	3.52449e-124
NZ_CP013129.1\|WP_024760130.1\|4216213_4217485_-\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP013129.1\|WP_055642670.1\|4212894_4214160_-\|hypothetical-protein	gnl\|CDD\|368370	pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24), sialomucin. This family consists of several MGC-24 (or Cd164 antigen) proteins from eukaryotic organisms. MGC-24/CD164 is a sialomucin expressed in many normal and cancerous tissues. In humans, soluble and transmembrane forms of MGC-24 are produced by alternative splicing.	0.000184007
NZ_CP013129.1\|WP_079037531.1\|4214156_4214885_-\|SigE-family-RNA-polymerase-sigma-factor	gnl\|CDD\|132028	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.	2.29326e-53
NZ_CP013129.1\|WP_055646192.1\|4210152_4211988_+\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	9.4949e-49

>NZ_CP013129.1|WP_024760130.1|4216213_4217485_-|aspartate-kinase
MGLVVQKYGGSSVADAEGIKRVAKRIVDTKKDGHQVVVVVSAMGDTTDELIDLAEQVSPIPAGREFDMLLTAGERISMALLAMAIKNLGHEAQSFTGSQAGVITDSVHNKARIIDVTPGRIRTALDEGNIAIVAGFQGVSQDKKDITTLGRGGSDTTAVALAAALDAEVCEIYTDVDGVFTADPRVVKKAKKIDWISFEDMLELAASGSKVLLHRCVEYARRYNIPIHVRSSFSGLQGTWVSNEPQGAQKVEQAIISGVAHDTSEAKITVVGVPDKPGEAAAIFRAVADAEINIDMIVQNVSAASTGLTDISFTLPKAEGRKALDELEKAKSAIGFDSLRYDDQIGKISLVGAGMKTNPGVTADFFKALSDAGVNIELISTSEIRISVVTRADDVNEAVRAVHTAFGLDSDSDEAVVYGGTGR
>NZ_CP013129.1|WP_055642669.1|4215149_4216217_-|aspartate-semialdehyde-dehydrogenase
MTPKPTLAVVGATGAVGSVMLQMLTHHADVWGEIRLLDTPGAAGSKAAVRGVECEVRALDEDSEESLDGVDLALFLVPEAVAARWAPVAVAKGAVVVDTSAAFRGDADVPLVVPEVNAHAARVRPRGIVASPGCTTLALIAAVGALHAEFGLAELVVTAQQAASGAGAGQAGVDALRAQLGLVAGDGELGTQPGDVRRAVGENSGPFPGPLALNVLPWSGTAGEDGASSEEERVRDETRRVLGLPGLRIAATCLRVPVVSGHSVSVHARFEHPVTVGRAHEVLATSPGVVLYDDPEAGDFPTPADVVGTDPAWVGRVRRSMDDERALDFFVCADNLRKGAALNALQIAESVVTDL
>NZ_CP013129.1|WP_079037531.1|4214156_4214885_-|SigE-family-RNA-polymerase-sigma-factor
MAEVLDIATIAPLRGAGTVVLPVRSAAVIPVRGSVVRPFGRPRGPGGMPVIAPVPAGSRTRAVDGIPSPRTSAEGDMAAGTTVDHLTETYRAHYRSLLGLAALLLDDTASCEDVVQEAFIRVHSARKRVREPEKTLAYLRQTVVNLSRSALRRRILGLKLLSKPMPDMASAEEGAYDQLERDDLIKAMKGLQRRQREVLVLRYFADMTEAQVAETLGISLGSVKAYGSRGIAALRVAMEANA
>NZ_CP013129.1|WP_055642670.1|4212894_4214160_-|hypothetical-protein
MSHEKDEPRAEREARAAEREARDERDDLSGRRMLNIEPGSEPDAEPDPGADTDPGSGLGDELALRRLLHGAVAGLEPTAGSLDHLRRAVPARRARKRQAVVGAAAAAVLIGTAVPAFVHVANSGGITAANPVNMGHGQDAQGGTGAETGVEGGKTSQSPASQVSPSQAAADGATGKPQQSGSGTSTQGPQVTQNPVPGDSPQCEPGQLGVSSTQTSGPDGSGSVYGTFRVANVSGQSCVVDGSGIVSFEARGAADPGKISVLRHTAGDGSGLPDPAQEATVLLLKPGGSYEVRFAWLPSETCPTSGGTPTTAPTPTTPTTQPTPTEPTPTVPPTTVPPTTTPPTTEPATQDPSAGTGGTDTGTGTDAEGGVAPQLLRADGTPADGSVSVSHTAEPGGPVAVATVPNACAGTIYRTGILAGP
>NZ_CP013129.1|WP_055642671.1|4212011_4212752_+|SURF1-family-protein
MYRFLTTPRWWGINVFVLLAIPFCVFMGTWQLGKFEDRVDSHQEAEQRPAASSLKAAPLATLLPVDKETSGRSAEARGRFGEQFLVPERDLDGRTGSYVLTLLKTDGGRSLPVVRGWLPTGAKAPAPPSGEVTVVGALQASENPGTKGAHTAGGLPEDQLGMISAAALVNVVSDDVYDAWITLTDSPAGLTPVPASAAAGTSLDVKAFQNLGYTAEWFVFAGFVLFMWFRLARREAEASRDEALGL
>NZ_CP013129.1|WP_055646192.1|4210152_4211988_+|S9-family-peptidase
MTESKDFAQIPAWEQTPVWEQRFRAPRVSLPEWAEEAPDRSLFVSNATGTYELYAWDRVSGEQRQVTDRPNGTTDGTLSPDGAWIWWFADTDGDEFGVWMRQPFAGGADEPAVPGLDASYPGGLAIGREGTLVIGRSTDEDGSTVHLVRPGAGAPVEIYRHRESAGVGDLSHDGSLIAIEHTEHGDAMHSALRVLRAADASVLAELDDTKGGTEELGLAVLGFAPVAGDSRLLVGHQRRGRWEPMLWDVAAGTETDLRLDLPGDVSAEWYPDGSGLLIVHSFEARSELFRYEIATRALVRVETPAGSVSEATARPDGSVEYLWSSAAEPPVVRSTDGSVVLDPPGPKAPPSVPVEDVWVDGPGGRVHALVQRPAEGEGPFPTVFEVHGGPAWHDSDAFASGPAAWVDHGYAVVRVNYRGSTGYGREWTDALKHRVGLIELEDVEAVREWAVSSGLADPARLVLSGGSWGGYLTLLGLGTRPDAWAVGLAAVPVADYVTAYEDEMEALKALDRTLLGGSPEEVPERYAASSPLTYVDAVKAPVHISAGVNDPRCPIRQIDNYVDRLAARGAVHEVYRYDAGHGSLVVEERIKQVALDLAFAAKHLGTRPSGA
>NZ_CP013129.1|WP_055642672.1|4209250_4210081_-|class-I-SAM-dependent-methyltransferase
MYSPTPEDWREANRARWDERVPIHASSAFYDLDAFRTGKDALRDFELAEVGDVTGRSLLHLQCHIGLDTLSWARHGAAHVVGLDFSEPAVETARSLAADLGLPQDRAAFVAADVYDAAAAVPDNAYDIVYTGGGALNWLPDIERWAETAASLVTPGGFLYVAEFHPLTDSLDDETGTRIVNDYFIREPWVDTAPGTYADLDADTVHNRSVEWVHPVGEVVTAIARAGLRIEFLHEHDASLYPRYGALQRHEDGYYRFPADRPRIPLMYSIKASRPA
>NZ_CP013129.1|WP_055642673.1|4208942_4209254_+|hypothetical-protein
MEFAVFVTLPGLVILLTVVAFADQLLRATGRGKRTGQVSSTGFEQLHATFSQGKQNELKERQSALVMRDDEEDGAPPHHSTVDLKGGRAVIRIGSPHDPEDRP
>NZ_CP013129.1|WP_055642674.1|4207861_4208893_+|AsnC-family-transcriptional-regulator
MHTGESVLGEPDLSLIHALQLAPRASWTQLSAVLGSSPDTLARRWDHLTEGGWAWSSLLVARSRDSTLYAWVELECAAGAADATAIELTDDPYTLGVHQVTGEADLVLLVVCPDLYALDVYLAGRVRRLPGVLRSRTQVVTRLHNRPYRSRIEQLAPGQVRLLTDVTGGEKRPRQSARPRMPLTDLDRALVAELAGDARRSAAELARQCGTSESTVRRRLDALMAAGALHHHCLPAPRFSGRPVWALVTADVQPLEVSSTVAALSRLRRTLLITSVTGPHNLAIATWLRTVEELHEMTSTLVRAAPTLRITGTQVSLRTRKIGAQVLGPDGRRTHHIRPDVTI
>NZ_CP013129.1|WP_055642675.1|4206151_4207549_-|hypothetical-protein
MAGATAESPESELLWGEPVSPDQLTAAEQGYESCGPAERLLWERLSVFEGAFGREAVREVCASGALPSGEIQGVLDRLAPLALLPVDDLFDGEDGAPRYWMPHPMRAVGARRLTARGDRWAVLLHHRRWCVKLARQAADWWQSGRQVDARNLALRELPDLAAAMDPTTAPLSPSAEADTSVEIAVSLWFLWVACGRVAEGRTRLRHALSLHSGPTPARALWLAAYLELESGRPEDADPLLVQAWAAAVRDGDDRCLGMLAHLRGATALFQGRSREAAAEFREALALMEEHPEFGPSRELCWVALALTLSRTDPEAAQEALDQAVLDTAARRAWTGRDLWADAWAHHARAELLSWDGERERAAEHARRALRAHLFLGTAVGAACAAELLAQMRVMVGRMTSAAHLLGAADLLRASVFEETYRPAEYCATSRDRSETLLRGLLDDRELRRAYEEGARLGLFALAGEE
>NZ_CP013129.1|WP_055642667.1|4220025_4222017_-|tetratricopeptide-repeat-protein
MTGGAGRADASGDRSVAAGGAIGRVNTGDFVTQVENATLLPPEALTVSPAGLVHLPERTQLFVGRARELALLDEGMGIQVLCGLGGIGKSTLAARWAADRVADHSVVWWITAETPAELDAGLADLARAMQPGVVGVLPEDALRERALQWLATNDDWLLVLDNVSAPADLHPLLARVGSGRIVVTSRRASGWQDIARTVVLDVLGPEEAAELFRGRRVGSGDGLELLCAELGYLPLALKQAAAYCAEAGITPRTYLGLLAKHPAEMFAATEEGGEAARTLARVWQVTLERLSDTPLAVGVLRIIAWWAPEEIPRRFLEPLGTALGVTEAVRRLAAHSMITLRDGELNVHRLVQAVVRADPSEETESAREKATGLLNECAPKDESHADRQIAVHAEALAGHTDPTDDTEDAAILFLIASGIFGMVMSMSRAASLSGRGADALRRIHGPDHPAVLWAVQTCALHRHMAGGGSEAAAELLTTGLADGLRVLGPDDPQTLSARRNLAVVLRSIEPERAVELFHENVEHCHRVLGARHPQTIAARYDLIEASSDADVRALEELLSDAERASPEDPFLCETIQRHLILLVAGTGETKRALAIAAEGVESCRRRYGDADSRTLVSRLIEVEVLREDGQMQRARALAIALEEDSLRVLGEGQLTELARVMQS
>NZ_CP013129.1|WP_055642666.1|4222052_4222712_-|DUF5063-domain-containing-protein
MSDATLHSVTQDPDDFAVQIADSIESFIVATTEVAKGDEPDSAVPFMLLEISQLLLAGGRLGAHEDIVPDERYEPDTGPEPDVDDLRERFAVMLDPVDVFSEVFDPYEPRKAPVPARISDNIADIVTDLRHGLAHYRAGRTSEALWWWQFSYFSNWGPTASATLRALQSLVAHVRLDQPLAELDGLDTDEDLTEDDLAEEAGRVMLEEIAAPLGLRSKK
>NZ_CP013129.1|WP_017240166.1|4222756_4223356_-|recombination-protein-RecR
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKEKVRFCAVCGNVAQQEQCNICRDPRRDLTVICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIKPMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV
>NZ_CP013129.1|WP_079037530.1|4223436_4223772_-|YbaB/EbfC-family-nucleoid-associated-protein
MIPGGGQPNMQQLLQQAQKMQQDLARAQAELAATEVDGQAGGGLVKATVTGSGELRGLVIDPKAVDPEDTETLADLIVAAVHAANENAQQLQQAKLGPLAQGMGGMPGLGF
>NZ_CP013129.1|WP_079037529.1|4224024_4224765_+|SLATT-domain-containing-protein
MSQQPDMQPPGQSGENSEATERPDRDLTGTPFPLGDWGEPAERLDELYRWVESNALRTAEWYLSDRIWKRRGARILRLGTAAGVIAGAALPLLDLTGAAEGAAGWGYLSLLIGAACLACDRYFGLTSGWIRDVATAQAVQRRLQALQFDWASESVREVLGPTEGTASEAAERCLGVLRRFSEDVTELVRAETADWMVEFRSGPAPLMLQSVGVVPARAESSHPSGRFPLPPGTRPNMPRQRPPEAR
>NZ_CP013129.1|WP_055642664.1|4224923_4225574_-|hypothetical-protein
MACDLWLVPLVDLLCHSPDNPFAEEIAAYDAVLSASGLPTVPVYAYMPGLSGDVAPIAGFDYEALHFLRRAYLLQVCGLPVEPVGELGGDYEQLLEMFEATAQQSHLVWHYDHAGSYVPVDFPAPLSSEELLEGGGPLGSSYGLLRELEFVAPSIGIDPMNPPALPLPPERPTSLEEPAGPIPYDDSPFARERHVWLGLHAAATRSLAQGSMIILS
>NZ_CP013129.1|WP_055642663.1|4225767_4226475_-|GntR-family-transcriptional-regulator
MPASGAVTRNTLRQQIADALRDEVLAGRLQPGQEFTVKQIAEQYGVSATPVREALVDLCAQGLLDSDQHRGFRVHQYSVDDYRRMVEARMLVVDGIFRRDAAMVPPRSVPTEPDLGVGVALVSVRRRGEAAARAARAGDLDVLIGYDIRYWRELARLVAANDYIAEFLHRLRVQAWVFSVPYLRSERDMNGWLWSGHVDLVDAITRGDAEGAVEVVRDYNTHSLEWAGYLEAQAR
>NZ_CP013129.1|WP_055642662.1|4226559_4227924_-|aspartate-aminotransferase-family-protein
MTPHVAAPDPQAGAAVKAADRAHVFHSWSAQGLIDPLAVAGAEGSYFWDYDGNRYLDFSSGLVYTNIGYQHPKVVAAIQEQAGKLATFAPAFAVDVRSEAARLIAERTPGDLDKIFFTNGGAEAVENAVRMARLHTGRHKVLSAFRSYHGATSTAINLTGDPRRWASDTGTAGVVRFWAPFLYRSPFYSENEQQECERALAHLEDTIAFEGPATIAAIILESVPGTAGIMTPPPGYLAGVREICDKYGIVFVLDEVMAGFGRTGKWFAADNFDVVPDLITFAKGVNSGYVPLGGVAINAEIAATFDKRPYPGGMTYSGHPLACAAAVATIQVMEDEKVVEHAAHIGENVLGPGLRELAERHPSVGDVRGLGVFWAIELVRDRETREPLVPYNAAGEAAAPMAAVGSTMKKNGLWPFINMNRVHAVPACNVSEAEVKEGLAALDVALSVADEYTA
>NZ_CP013129.1|WP_055642661.1|4228090_4228696_+|thiamine-biosynthesis-protein-ThiJ
MGTESATTTVHLAVYDTLADWETGHATAWLTRAGYTIRTVGPVAGEPVTTIAGIRIVPDLALDDLRPEDSALLILPGAEKYDEGDELAPFTAKARTFLDAGVPVAAICGATAGLAKEGLLDDRPHTSAVSFYLAATGYKGGEHYVDADAVTDGDLITAGPTEPVAFAREIFARLGAYEGKRDAWYRLFHDSDPAAFVELNS
>NZ_CP013129.1|WP_055642660.1|4228692_4229166_+|MarR-family-transcriptional-regulator
MSDRQQQDALSRTALGVFRLNGQFLAVSEKLAEPAGLTAAWWQVLGAVLPEPLPVAGIARVMGITRQSVQRIADLLVREGLAAYEPNPAHRRAKLLTPTEAGRAAIGRIEPGHAELAALLARELGGQEAFDETVRVLERLSGALDAVSARYTAPEAP

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Crispr_ID: NZ_CP013129_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013129_4

4532795-4532895

Orphan

Consensus_repeat	Method
GGAGTGATGTTTCACGTGAAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013129_4

>merge|NZ_CP013129|4|4532795-4532895|CRISPRCasFinder
GGAGTGATGTTTCACGTGAAACACCGCGTTTCACGTGAAACATCCGCGCGATCGAGACCATGGCGGCGAGGCGGTGGAGGGGTGATGTTTCACGTGAAACA

>NZ_CP013129|4|4|4532795-4532895|CRISPRCasFinder
GGAGTGATGTTTCACGTGAAACA	CCGCGTTTCACGTGAAACATCCGCGCGATCGAGACCATGGCGGCGAGGCGGTGGA
GGGGTGATGTTTCACGTGAAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013129.1\|WP_055642451.1\|4519589_4520687_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP013129.1\|WP_055642439.1\|4539347_4540874_+\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|227937
NZ_CP013129.1\|WP_055642442.1\|4534228_4535311_-\|inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491
NZ_CP013129.1\|WP_055642447.1\|4523034_4523973_-\|zf-HC2-domain-containing-protein	unknown	unknown	gnl\|CDD\|379219
NZ_CP013129.1\|WP_055642444.1\|4531334_4532777_+\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131739
NZ_CP013129.1\|WP_055646155.1\|4523969_4524662_-\|RNA-polymerase-sigma-factor-SigM	unknown	unknown	gnl\|CDD\|236604
NZ_CP013129.1\|WP_055642436.1\|4543264_4543582_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_005315025.1\|4544879_4545116_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP013129.1\|WP_055642449.1\|4521547_4521880_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP013129.1\|WP_055642441.1\|4535361_4536042_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP013129.1\|WP_055642435.1\|4544230_4544821_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236092
NZ_CP013129.1\|WP_005482942.1\|4543866_4544157_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP013129.1\|WP_055642450.1\|4520848_4521466_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP013129.1\|WP_055642440.1\|4536829_4539226_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP013129.1\|WP_055642448.1\|4521929_4522895_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP013129.1\|WP_055642446.1\|4524699_4526391_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270875
NZ_CP013129.1\|WP_055642438.1\|4540889_4541921_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NZ_CP013129.1\|WP_055642445.1\|4526507_4528739_-\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|273763
NZ_CP013129.1\|WP_055642437.1\|4542003_4543122_-\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	unknown	unknown	gnl\|CDD\|225224
NZ_CP013129.1\|WP_079037920.1\|4528784_4531145_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013129.1\|WP_055642451.1\|4519589_4520687_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.06972e-79
NZ_CP013129.1\|WP_055642439.1\|4539347_4540874_+\|DUF2029-domain-containing-protein	gnl\|CDD\|227937	COG5650, COG5650, Predicted integral membrane protein [Function unknown].	1.15804e-37
NZ_CP013129.1\|WP_055642442.1\|4534228_4535311_-\|inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
NZ_CP013129.1\|WP_055642447.1\|4523034_4523973_-\|zf-HC2-domain-containing-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	0.00194355
NZ_CP013129.1\|WP_055642444.1\|4531334_4532777_+\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP013129.1\|WP_055646155.1\|4523969_4524662_-\|RNA-polymerase-sigma-factor-SigM	gnl\|CDD\|236604	PRK09643, PRK09643, RNA polymerase sigma factor SigM; Reviewed.	2.34913e-92
NZ_CP013129.1\|WP_005315025.1\|4544879_4545116_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	5.36969e-37
NZ_CP013129.1\|WP_055642449.1\|4521547_4521880_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	1.2261e-45
NZ_CP013129.1\|WP_055642441.1\|4535361_4536042_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	8.13039e-18
NZ_CP013129.1\|WP_055642435.1\|4544230_4544821_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236092	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional.	3.63028e-90
NZ_CP013129.1\|WP_005482942.1\|4543866_4544157_+\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	8.20181e-40
NZ_CP013129.1\|WP_055642450.1\|4520848_4521466_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.000210216
NZ_CP013129.1\|WP_055642440.1\|4536829_4539226_+\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	6.10619e-147
NZ_CP013129.1\|WP_055642448.1\|4521929_4522895_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	1.1787e-155
NZ_CP013129.1\|WP_055642446.1\|4524699_4526391_-\|serine/threonine-protein-kinase	gnl\|CDD\|270875	cd13973, PK_MviN-like, Pseudokinase domain of the peptidoglycan biosynthetic protein MviN. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. This family is composed of the mycobacterial protein MviN and similar proteins. MviN is an integral membrane protein that is essential for growth and is required for cell wall integrity and peptidogylcan (PG) biosynthesis. It comprises of 14 predicted transmembrane (TM) helices at the N-terminus, followed by an intracellular pseudokinase domain linked through a single TM helix to a carbohydrate binding extracellular domain. Phosphorylation of the MviN pseudokinase domain by the PG-sensitive serine/threonine protein kinase PknB recruits a forkhead associated (FHA) domain protein FhaA, which modulates local PG synthesis at cell poles and the septum. The MviN pseudokinase forms a canonical receptor kinase dimer.	8.59885e-58
NZ_CP013129.1\|WP_055642438.1\|4540889_4541921_-\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	1.36577e-09
NZ_CP013129.1\|WP_055642445.1\|4526507_4528739_-\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|273763	TIGR01695, Putative_lipid_II_flippase_MurJ, murein biosynthesis integral membrane protein MurJ. This model represents MurJ (previously MviN), a family of integral membrane proteins predicted to have ten or more transmembrane regions. Members have been suggested to act as a lipid II flippase, translocated a precursor of murein. However, it appears FtsW has that activity. Flippase activity for MurJ has not been shown. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	7.41962e-150
NZ_CP013129.1\|WP_055642437.1\|4542003_4543122_-\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	1.43762e-34

>NZ_CP013129.1|WP_055642444.1|4531334_4532777_+|CCA-tRNA-nucleotidyltransferase
MPNANEDTPTALSQVQRRAVSELLRVSPVADDLARRFQEAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWEVGIAFGTVGSQKDGYQIEVTTYRSEAYDRTSRKPEVSYGDSIDQDLVRRDFTVNAMAVALPEKEFIDPYGGLEDLAARVLRTPGTPEESFSDDPLRMMRAARFAAQLDFEVAPEVVTAMREMSGRIEIVSAERVREELNKLLVSAHPRKGLGLLVDTGLADHVIPELPALRLESDEHHRHKDVYEHSLTVLDQAIDLEEDGPDLVLRLAALLHDIGKPRTRRFEKDGRVSFHHHEVVGAKMTKKRMTALKYSNEMIKDVSRLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLSRLHKLTRSDCTTRNKRKATALSRTYDGLEERIAQLQEQEELDAIRPDLDGNQIQEILGIGPGPAIGQAYKFLLELRLENGPMEHDQAIAALKEWWAARG
>NZ_CP013129.1|WP_079037920.1|4528784_4531145_-|hypothetical-protein
MGEAADIQGTGPSPARRWLRRTITVAVGAPLLAGLLQAPTATPADAAAEAAVSKTVDVSLDTLSPVAPVEGDTVTVSGTVTNRGKKTITDATVNLRVGPMMTSRSEIDQVSDRTGYRGDSDPAPLDEAPTVKIARLGAGLSADFSLTVPVSELGLDESGVYQLGVSLTGQTSSQRYDRVLGIERTFLPYQPEATEKKTQLTYLWPLISSAHVSAETATDDQQTPVFEDDALAAELRPGGRLEQMVSLGKDLPVTWVIDPDLLATVDAMANGYRVKDGTAHVPGKNKAVAEQWLNALEKAVQGRKIVALPFADPDLASLAHRGKDVPGSLGHLQSATSLAETTVETVLHVQPSTDFAWPVEGAVDPSIVAVATSAGANKVIARSDSVRDDLSYTPTAARPLGNGSTTAVVSDKLLSTAFEGDMVRTENSTLAVQEFLAQSLAITLEQPEQQRSVVVAPQRVPSVSQAQTMATALRGLSAQRWSHPIDLQAAAVAKPDPDASTTVPSGSRYPKKLRDRELPVQTFRDMKTTRDELDDFKIVLTLPDRVVTPFGNAINREMSTSWRGQARSAAVYRNDVLQYLQDLTEGIQLVDKSDLTLSGRSATIPVTVQNKLLQGVDDLVLRLTSGNGNRLELNGGRYAELPVKINAGHSQSVKFEASANVNGQVPMTAQLYTADGTPYGQPMTFNVKVSEITATVMLVIAGGVLLLVLAGVRMYSQRKRVAARKAETDVAEPETEESEPGTETDPGDGGDGEDVEDGEPEQPSDPTPDTGFESGDPSGPGEKVDR
>NZ_CP013129.1|WP_055642445.1|4526507_4528739_-|murein-biosynthesis-integral-membrane-protein-MurJ
MNAPYDGDRGQGAGGTAPSGGTPAAPPGSGYPPVPPSAQQGVPDPHGQDPYAQNPYAQDPYVQDAFTHDPYRAQDLSAQDPVTEALYDRAAHPPPPPGTYQEPQPLYQQPAAPQHAPDPRVWAQTPAPEPDGPSRHLPYGDDARTVQFTGVDDLVTRAGEEQPEPDAFAHLYRDQQTPGQVPPPASDPDPMPVPAPAPKKSGRASGLLKSSAVMAAGTLVSRLTGFVRSLVITGALGAALLGDTFTIAYTLPTMIYILTVGGGLNSVFVPQLVRSMKNDEDGGEAYANRLLTLVMVALGLIVVAAVLAAPVLVRLMSNTIADDAAANSVAVTFARYCLPTIFFMGVHVVMGQILNARGKFGAMMWTPVLNNIVMIVTFGLFIWVYGTSAESQMGVQTIPDEGIRLLGIGTLLGLVVQALAMIPYLRETGFRFRPRFDWKGHGLGKTVKLAKWTVLFVLANQAGVLVVTQLATAAGQESGKNGAGFLAYSNAQLIWGMPQAIITVSVMAALLPRISRAAHDNDPGAVRDDISQGLRNSAVAIVPVSFAFLALGVPMCTLLYASSGVEAAQGMGFILMAFGLGLIPYSVQYVVLRGFYAYEDTRTPFYNTVIVAAVNAAASALCYVLLPAQWAVVGMAGAYGLAYAVGVGIAWRRLSKRLGGDLDGTQVLRTYARLCMASVPAAIVAGAVGFGLLKLLGEGALGSLVALLVGGAVLLGVFFLAAKRMRITELNTLVGMVRGRLGR
>NZ_CP013129.1|WP_055642446.1|4524699_4526391_-|serine/threonine-protein-kinase
MAERSTAAVDVADSGDDPLTAKADKAATDGVATTQKMAEKSAEPTGSKAVERQSGEQPSITAPELHSGHKLARRYRLEECVTRLDGFSSWRAVDEKLRRAVGVHLLPADHPRARSVLAAARSAALLGDPRFVQVLDAVEENDLVYVVHEWLPDSTELTALLATGPMEAHDAYQLVSQVSQAMAAAHREGLAHLRLTPSAVLRSSTGQYRIRGLAVNAALRGITAERPQRTDTEAIGALLYAALTQRWPYDSDAYGLSGLPKGVGLLSPDQVRAGVHRGLAEIAMRALANDGATASRQDRPCTTPDELAKAVAAMPRVKPPEPTFATPPDYQRTTYQQGTYGRPQARPVAAPQPVIPPPAPLQSRTGTALKWAVSALLIAALGLGSWQIADRLLAPESTTKSPVPTPTVDEKPEPPKPISIASAQDFDPPPKGSGGENPQAIQLAYDGDPNTYWHTVNYFGSDFANLKPGVGMVLDLGTAKEISSVELSFVGQTSVELRTAPSDASSAPSTADEFTTQAEGSGSNVTLKPTKPITTRYVLVWLTELPANDGGFRGKLSEIKILG
>NZ_CP013129.1|WP_055646155.1|4523969_4524662_-|RNA-polymerase-sigma-factor-SigM
MDESTGDQELLARHVAGDPDAFSELVRRHRDRLWAVALRTLGDREEAADALQDALLSAFRAAHTFRGQSAVTTWLHRITVNACLDRARKAASRRTSPVDDTNRFEQLLDPHESAEAPAERQDLHRQVLAALALIPEDQRAALVLVDMQGYPVAEAARILGVPTGTVKSRCARGRSRLLPMVTHLRADTVGNEATEGGRNRTPGTSVPPVPGPTNTGPTDPAAVKGGGGRA
>NZ_CP013129.1|WP_055642447.1|4523034_4523973_-|zf-HC2-domain-containing-protein
MTSTTGKADTTQHPDVSEISDLTEGLLSPSRSAAVRRHLDGCPLCADVRTSLEEIRGLLGTLPGPPRMPAEIAGRIDAALAAEALLQATAPESGTPVSRETSRPRTEPLASGAPSPATERPAGRPSAATGPGRPGKPRRRRIALASTIGTAFAAAVLGTTLLLSQGGGPTAGIADGAKKADAGAVAMSSFSGTPVEERVHALLGEAPGTAKTPQGIGPESMSAESTAATPQRNRDSAAVPGCVLAGTGRTDAVLAQERGEYEGTPAYLLVLADPADSTRVQAFVLDASCADRPTNTGSPAADLLLSETYPRS
>NZ_CP013129.1|WP_055642448.1|4521929_4522895_-|thioredoxin-disulfide-reductase
MSDVRNVIIIGSGPAGYTAALYTARASLNPLVFEGAVTAGGALMNTTEVENFPGFRDGIMGPDLMDNMRAQAERFGAELVPDDIIAVDLTGDIKTVTDTAGTVHRAKAVIVTTGSQHRKLGLPNEDALSGRGVSWCATCDGFFFKDQDIAVVGGGDTAIEEATFLSRFAKSVTIVHRRDTLRASKAMQERAFADPKISFAWDSEVTAIHGEQKLSGLTLRDTKTGATRELAVTGLFIAVGHDPRTELFKGQLELDDEGYLKVAAPSTRTNLTGVFGAGDVVDHTYRQAITAAGTGCSAALDAERFLAALADSEKLAETPAV
>NZ_CP013129.1|WP_055642449.1|4521547_4521880_-|thioredoxin
MALKNVTDASFDEDVLKSGKPVLVDFWAAWCGPCRQIAPSLEAIAAEHGEIEVVKLNIDENPATAAKYGVMSIPTLNVYQGGEVVKTIVGAKPKAAILRDLADFVTPANG
>NZ_CP013129.1|WP_055642450.1|4520848_4521466_+|GNAT-family-N-acetyltransferase
MGRRLVPLTLDNLPDLPRRCRSCVFWELDPVSGEAAVKAGRPETEKEAWISAVLLEWGSCGRVVYVDEVPVGYVLYAPPAYVPRSTAFPTSPVAADSVQLMTAWIMPGYQGQGLGRMIVQTVAKDVMRRGFKAIEAFGDARWKEPACVLPADHLLAVGFKTVRPHHAFPRLRLELRTTLSWKEDVEMALDRLLGAVQKEPALRPL
>NZ_CP013129.1|WP_055642451.1|4519589_4520687_+|ParB/RepB/Spo0J-family-partition-protein
MSKRPRGLGRGLGALIPAAPQEQKVPAVGLGVGASSPGAVPGLPSERGVAAAKLATLPHSSPSPDSDTSWGEAVEVALPEVQGGAYFTELPIEAIVPNRHQPREVFDEDALAELVISIKEVGLLQPVVVRKLGDERYELVMGERRLRASTTAGLERIPAIVRDTDDEKMLLDALLENLHRAQLNAIEEAHAYEQLLKDFGCTHDQLAERIGRSRPQISNTLRLLRLSPPVQRRVAAGVLSAGHARALLGVEDAEAQDQLAYRIVAEGLSVRTVEEIVSLMGSEEPAAVKPKGPRAGGRVSPALTDLASRLSDRFETRVKVDLGQKKGKIVVEFASMDDLDRILSTLAPGEGKVMDQKNAQQSEQG
>NZ_CP013129.1|WP_055642442.1|4534228_4535311_-|inositol-3-phosphate-synthase
MGSVRVAIVGVGNCAASLVQGVEYYKDADPAAKVPGLMHVQFGDYHVGDVEFVAAFDVDAKKVGLDLSDAIGASENNTIKICDVPNAGVTVQRGHTLDGLGKYYRMTIEESAEEPVDVVQILKDRQVDVLVCYLPVGSEDAAKFYAQCAIDAKVAFVNALPVFIAGTKEWADKFTEAGVPIVGDDIKSQVGATITHRVMAKLFEDRGVRLERTMQLNVGGNMDFKNMLERDRLESKKISKTQAVTSQIPDRELGEKNVHIGPSDYVAWLDDRKWAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGVIIDALRAAKIAKDRGIGGPILSASSYFMKSPPVQYFDDEALANVEKFIKGEVER
>NZ_CP013129.1|WP_055642441.1|4535361_4536042_-|PadR-family-transcriptional-regulator
MSRRSGILEFAVLGLLREAPMHGYELRKRLNTSLGVFRAFSYGTLYPCLKTLVANGWLIEEPGSAPEEALAASLAGRRAKIVYRLTPEGKEHFEELLTHTGPDAWEDEHFAARFAFFGQTEREVRMRVLEGRRSRLEERLEKMRASLARTRERLDDYTLELQRHGMESVEREVRWLNELIESERAGRDQRSGPGAPALHDNDSGETGGLPRHGGSTRPDPSDDTAK
>NZ_CP013129.1|WP_055642440.1|4536829_4539226_+|penicillin-binding-protein
MPSWKLVTGTFLVFVGVLMGGAVFAYSKVTIPETDETAVSQNNIYYWSDGTRMVATGSGTNRQIVGIEQIPRVMQEAVVSAENKTFWDDSGIDPMGMGRAVWNMAKGGETQGGSTITQQYVKNNRLNDQSQTLTRKVKELFISMKVGNDVGKPEIMAGYLNTSYYGRGAYGIQAASRAYFNKDAKHLNASESALLTAVLKGATYYDPAGYPEIDPEATPDKNLDRATKRWSWILDEMVKDGKITAEERNKYTTFPKVQKRKQDAQLSGQIGYLVSTAKANFINNNTDGIGAKELERGGYEIYTTFEKKKVNDLEAAVKKVYDENIDPKKRPKTDTNVQFGGASVNAQTGALVAIYGGADATKHFTNNADTTGAQVGSTFKPFVLAAAMQDGVRDKDLGRLQDASSRTIVDPDKSRYSGKNKLKIRQYNGEIWENEKGEEWFQTNDGDASYGPMTLRRAMIKSANSPYVQLGMDVGIDKVREAAVKAGLREDSLVKGEVPSFSLGISSPSAIRMAGAYATFADNGQQKDPFSVTKVVKNGKTIYKHEAKTVQAFSTAIASNVTDVLRSVVEDPEGTGRKAAIPGRAVAGKTGTTDGNKSAWFVGYTPQLSTAIDMYRFDDDETKKNREFEEMYGTGDRDTIHGSSFPSQIWNDYMTDAVADMPDVKFPEPEDLENAEPVFGGGATSPTPSPTATPTPTETTATPTTEAPTTTPPATPTTTPPTRPTKSPKPGKTTCSVWDFDCNNPGGDPGGNTGEPTTTPPTTTEAPTPTDSATTEDPGDETGRPGGGGNGGNAAWTP
>NZ_CP013129.1|WP_055642439.1|4539347_4540874_+|DUF2029-domain-containing-protein
MPSLQKTREPQDRPQGPRTVIPTHRDEVAAAGSELIGGPFGRRALTGRGQFTPVRVIALVAIGMFALGMVQKLPCYNWAWFRGTTSQYTHACYSDIPHLFSGRGFADGLVPYFDRLTGDIPFLEYPVLTGLFMEVAAWLTPGSGTMDHREQTFWMVNAGMLMVCAAVLAVCVTRTHRSRPWDGLLVALAPSIALTATINWDILAVALTSAAVLLWSRGRPLGFGILLGLATAAKFYPILLLVPLLLLCWRAGKWREYGTAVLGAAGAWLVVNLPVMLMAPEGWKQFYLFSRDRNVDFGSVWLLVSQRTGTSITPDKANMYALMLMVVAVVALGFLAFSAPRRPRFAQLAFLVVAAFVLTNKVYSPQYVLWLVPLAALARPRWRDFLIWQACEVMYFLGIWMYLAFMNSGNKQGLPVDGYQFAIVLHLLGTLYLCVMVVRDILLPEKDPVRQDGSDDPSGGVLDGAEDVFVTGRAAHPARHAAPAAEGPRVEWGTPGDPEPVTERDSRG
>NZ_CP013129.1|WP_055642438.1|4540889_4541921_-|alanine-racemase
MALSLYVDTARWRAHQKTVIDQFPGLIPVCKGNGYGFGHERLADEAARFGADMLAVGTTYEAAKIKDWFSGDLLVLTPFRRGEEPVPLPDRVIRSVSSVDGVHALVGARVVIECMSSMKRHGVHEGELQQLHAAIEDVRLEGFALHLPLDRPDGTDAVEEVIAWMDRLRAARLPLHTMFVSHLRAEEQARLQQQFPQTRFRARIGTRLWLGDHEATEYRGAVLDVTRVAKGDRFGYRQQKAASDGWLVVVAGGTSHGVGLEAPKAMHGVMPRAKGVARAGLATVNRNLSPFVWAGKQRWFAEPPHMQVSILFVPSDAQEPRVGDELVAHLRHTTTQFDRLVER
>NZ_CP013129.1|WP_055642437.1|4542003_4543122_-|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein
MSLTLRTISREQHLGFIQSQPAASHCQVPAWADVKTEWRSENLGWFDKNGELVGVGLVLYRQLPKIKRYLAYLPEGPVINWHAPNLDDWLQPMLAHLKQQGAFSVKMGPPVVIRRWDAAAIKSGIQDPDVKRLKDVEATHIEPRAFEVADRLRKMGWQQAEDGGAGFGDVQPRYVFQVPLANRSLDDVLKGFNQLWRRNIKKAEKAGVEVVQGGYEDLAEWQRLYEITAVRDHFRPRPLSYFQRMWTVLNNEDPNRMRLYFARHNGVNLSAATMLVVGGHVWYSYGASDNIGREVRPSNAMQWRMLRDAYAMGATVYDLRGISDSLDETDHLFGLIQFKVGTGGEAVEYVGEWDFPLNKLLHKALDIYMSRR
>NZ_CP013129.1|WP_055642436.1|4543264_4543582_-|hypothetical-protein
MAQAMRPDPGHSLFATDGKPHPLQDTLVGVTLILGVLAFVTAQFDNLHLLSSWSGLIGILTGAYGQFISVTTRERFLLVVGLGASAFGFYLGMAHGGLFGGVISY
>NZ_CP013129.1|WP_005482942.1|4543866_4544157_+|30S-ribosomal-protein-S6
MRHYEVMVILDPDLEERAVAPLIENFLSVVREGNGKVEKVDTWGRRRLSYEIKKKPEGIYSVIDLQAEPAVVKELDRQMNLNESVLRTKVLRPETH
>NZ_CP013129.1|WP_055642435.1|4544230_4544821_+|single-stranded-DNA-binding-protein
MAGETVITVVGNLVDDPELRFTPSGAAVAKFRIASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVVVQGRLKQRSYEDREGVKRTVYELDVEEVGPSLKNATAKVTKTTGRGGQGGYGGGGQQQGGGSWGGNSGGGAPQGGGGAPADDPWATGAPSGGSGAQQGGGGGGWGGNSGGGYSDEPPF
>NZ_CP013129.1|WP_005315025.1|4544879_4545116_+|30S-ribosomal-protein-S18
MAKPPVRKPKKKVCAFCKDKTAYVDYKDTNMLRKFISDRGKIRARRVTGNCTQHQRDVATAVKNSREMALLPYTSTAR

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Crispr_ID: NZ_CP013129_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013129_5

5162117-5162200

Orphan

Consensus_repeat	Method
GGCGACTTCGAGGCAGTTGCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013129_5

>merge|NZ_CP013129|5|5162117-5162200|CRISPRCasFinder
GGCGACTTCGAGGCAGTTGCCGCCTTCGGCGCCGCTGTAGCTGGACTTGCGCCAGTCGTAGGCGACTTCGATGCAGTTGCCGCC

>NZ_CP013129|5|5|5162117-5162200|CRISPRCasFinder
GGCGACTTCGAGGCAGTTGCCGCC	TTCGGCGCCGCTGTAGCTGGACTTGCGCCAGTCGTA
GGCGACTTCGATGCAGTTGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013129.1\|WP_055641957.1\|5159670_5161869_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP013129.1\|WP_079037908.1\|5158982_5159561_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319829
NZ_CP013129.1\|WP_055641963.1\|5155894_5156563_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372574
NZ_CP013129.1\|WP_055641961.1\|5157470_5157908_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_055641965.1\|5153106_5153505_+\|Zn-ribbon-domain-containing-OB-fold-protein	unknown	unknown	gnl\|CDD\|224462
NZ_CP013129.1\|WP_055641959.1\|5158427_5158865_-\|DUF3995-domain-containing-protein	unknown	unknown	gnl\|CDD\|372505
NZ_CP013129.1\|WP_055641954.1\|5163202_5163646_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP013129.1\|WP_055641952.1\|5165836_5168077_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP013129.1\|WP_055641951.1\|5168162_5170451_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP013129.1\|WP_055641955.1\|5162247_5163111_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP013129.1\|WP_055641966.1\|5152657_5153107_+\|DoxX-family-membrane-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP013129.1\|WP_055641949.1\|5173445_5173850_-\|DUF1992-domain-containing-protein	unknown	unknown	gnl\|CDD\|378159
NZ_CP013129.1\|WP_055646088.1\|5172924_5173440_-\|DUF664-domain-containing-protein	unknown	unknown	gnl\|CDD\|368218
NZ_CP013129.1\|WP_055641953.1\|5163606_5165820_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP013129.1\|WP_055641960.1\|5157904_5158441_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP013129.1\|WP_055641950.1\|5170479_5172756_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP013129.1\|WP_055641964.1\|5153526_5155527_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP013129.1\|WP_030208785.1\|5174938_5175142_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP013129.1\|WP_055641948.1\|5173981_5174818_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP013129.1\|WP_055641962.1\|5156616_5157450_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669

Protein	Function_ID	Function_description	E-value
NZ_CP013129.1\|WP_055641957.1\|5159670_5161869_-\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	6.30569e-07
NZ_CP013129.1\|WP_079037908.1\|5158982_5159561_-\|HAD-family-hydrolase	gnl\|CDD\|319829	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). This subfamily includes Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). GPP1p and GPP2p are involved in glycerol biosynthesis, GPP1 is induced in response to both anaerobic and hyperosmotic stress, GPP2 is induced in response to hyperosmotic or oxidative stress, and during diauxic shift; overexpression of DOG1 or DOG2 confers 2-deoxyglucose resistance. These belong to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.24747e-34
NZ_CP013129.1\|WP_055641963.1\|5155894_5156563_+\|hypothetical-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	6.72386e-09
NZ_CP013129.1\|WP_055641949.1\|5173445_5173850_-\|DUF1992-domain-containing-protein	gnl\|CDD\|378159	pfam09350, DUF1992, Domain of unknown function (DUF1992). This family of proteins are functionally uncharacterized.	1.34541e-19
NZ_CP013129.1\|WP_055641965.1\|5153106_5153505_+\|Zn-ribbon-domain-containing-OB-fold-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	2.69486e-25
NZ_CP013129.1\|WP_055641959.1\|5158427_5158865_-\|DUF3995-domain-containing-protein	gnl\|CDD\|372505	pfam13160, DUF3995, Protein of unknown function (DUF3995). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 138 and 149 amino acids in length. There are two completely conserved residues (W and P) that may be functionally important.	0.000188839
NZ_CP013129.1\|WP_055641954.1\|5163202_5163646_+\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	2.35751e-18
NZ_CP013129.1\|WP_055641952.1\|5165836_5168077_-\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	4.48991e-05
NZ_CP013129.1\|WP_055646088.1\|5172924_5173440_-\|DUF664-domain-containing-protein	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	1.0027e-13
NZ_CP013129.1\|WP_055641951.1\|5168162_5170451_-\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	6.70554e-06
NZ_CP013129.1\|WP_055641955.1\|5162247_5163111_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	2.63753e-08
NZ_CP013129.1\|WP_055641964.1\|5153526_5155527_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.25801e-73
NZ_CP013129.1\|WP_055641966.1\|5152657_5153107_+\|DoxX-family-membrane-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	0.00171399
NZ_CP013129.1\|WP_055641953.1\|5163606_5165820_-\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	2.91011e-05
NZ_CP013129.1\|WP_055641960.1\|5157904_5158441_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.21581e-19
NZ_CP013129.1\|WP_055641950.1\|5170479_5172756_-\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	0.000604123
NZ_CP013129.1\|WP_030208785.1\|5174938_5175142_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	4.12144e-36
NZ_CP013129.1\|WP_055641948.1\|5173981_5174818_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	8.95647e-26
NZ_CP013129.1\|WP_055641962.1\|5156616_5157450_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.92415e-16

>NZ_CP013129.1|WP_055641957.1|5159670_5161869_-|VCBS-repeat-containing-protein
MNHAHIRGRRLAVAVTAVLAVTAVGGTLVTAPAAEATMAAPAAANATVTLPAGEKLVSSGNTGFLTSKDDGAGGTALTWTRFDDGSRTPIPGALAYTSRSDTIITREGNRFVLRDMSVSMFVSYMEPTGIGTEYKVVGAAGSTLFLTVPNRYGGEDLYRLTRVNGVQQQESISAVPTARDFKVTAHSLSTALVFFTKHNSGGTSYYRALTDLGGNFMRPERSALSFDPATLTGAISPSYVAWTTTVDGFTRVAVEKRSEYEPFKYISLGAGTSGVVVGFSGDWLLYGVPGGLTASTPNPLYALTAQNVLTGETTTLLDHFTATSTAPDGSLFVQGGKATDGEGLFKITEGASPQASLVAGTPGASTAPAVVRSTVPPVAQLDRNGGQVAMEWELSRYNVHLDVTLRHNVTGKTFTKRLTRPSAPARLTWDGLINGASAPNGDYTWHVVATPANGIGNPGYANGTLKVTRQANPHDYTDNGSPDLLARDAAGVLWRDDLLDSPVGGQVTPAKPRVKIGPGWNTYNVIEAAGNIAGSGAGDVLARDTAGVLWTYISKGDGTFGTRTKVGPGWGVYNKLAAGSDLTGDGRDDLVATDASGALWLYKGTGSATVPYAGRVRVGPGWGGYNQLTAVGNIAGGVAGDLVARDASGVLWLYLGKGDGTFAARTKIGTGWGGYSQLVGVGDANNDGRPDLVAYGSAGTHVFLGTGSWSAPFTKTVTSLYAGEGTKFTSVS
>NZ_CP013129.1|WP_079037908.1|5158982_5159561_-|HAD-family-hydrolase
MDAVANQRRMWHEWAARYGLDGDEVHSVALRTRPVETFAAVAPGRDPDECLALLHALEDEDVRTGTYTAFDGAAELLGGLPADRWALVTSNYEHRVRGRFERTGLPLPGLIVDAASVGEGKPSPVPYLLAAEKLGADPAECLVVEDAPSGVRSGLAAGMTVWSVNGPEQVAGAHRHFATLAEAAPHILATLV
>NZ_CP013129.1|WP_055641959.1|5158427_5158865_-|DUF3995-domain-containing-protein
MAVIDIQRPGTATGARAVSALLAVLALAHVYWATGLTWPAHDERGLSLAVLGSVVSFGPSVVLPLAALEGLAALAVSARVRRRGGRTAQLVTAAVAGGMLLRAAVGLVWIVIGRDGSGAAFPWLNAFLYTPLCLVFGWAALRAAR
>NZ_CP013129.1|WP_055641960.1|5157904_5158441_-|RNA-polymerase-sigma-factor
MPPADHADRRVDRRVDRGVALARAARRGDTLALHDLLDHLTPYIARICRSIALDDGPDATQEALVAVFTSLRSLREPEALYGWVRGISVREAVRVAKRAARARPAELADVPERGDPQLAADIDDVLSRLSPQHRAVLVLRDVEGLDEESAAAVLGVPAGTAKSRLHRARQSFRKAWNG
>NZ_CP013129.1|WP_055641961.1|5157470_5157908_-|hypothetical-protein
MTPSNVGRLRVMGAAIRGAHVVEGVLPSSFDEVWGVMGDLEGGFGDFQPDMRSVRVLRVDGDRVEALARSRYGLRAHFHGVLRPGWGWLQSRFLVVGMAADAMGDGRTRVALTGGVRVPGRPALVPIGARGELERAMRRLGERVP
>NZ_CP013129.1|WP_055641962.1|5156616_5157450_+|alpha/beta-hydrolase
MTTATATTASTSHSPAPWTGKISVDDTALAVTDTGGPGRPVVYLNGSYADQKHWRRVIDELGGDYRHITYDERARGKSDLSADYSFEACLRDLDAVLTARGIDRPILVGWSYGAMLAVHFAARNPDRFLGVVSVDGALPHSWLDEATKVQVRKLFRRLSPLFPVARRIGMAARMSAEQHAEINIEVNELCAPAALDPVFDRLTVPTKYVLATGGNLGGDPKLMEKIRANLTPVTARNPHVQLSAKVPSNHSKILRKDFRAVADAAREIAATARAIGR
>NZ_CP013129.1|WP_055641963.1|5155894_5156563_+|hypothetical-protein
MQFPTTAPIAVVLAVPAGLVRFIAADRADTTVEVLPANASKSNDIKAAEQVTVAFTDGVLRIEAAEAKNRILGNSGSVEVTVQLPAGSHVEAKTAAAELHGVGRLGNVTFDSAQGTVKLDETAAAHLTLQAGDITVGRLGGAAELSTQQGNIRITEALGGSVVLRTDSGDLEVGAAHGVSATLDAGTTHGRIHNTLRNNEGAGAGLNIQATTAYGDITARSL
>NZ_CP013129.1|WP_055641964.1|5153526_5155527_-|serine/threonine-protein-kinase
MPLEAGDPRRIGAFRLLGVLGSGGMGRVYLGAVPGKFAAVKRVLPVLAEDADFLSHFGHELDNLARLPAGANTKLLASDRTAKPPWFATEFIPGITLSEAIRLHGGPLPPESLWRLLRDAAAGLRVVHGADMVHRDLKPSNVMLTDGGLSLIDFGVARAADQSRLTKTGMVIGTPAYMAPEQAVADRQLTGAADVFALGSLVLYAANGRPPFGDGSGPDLLYRVVHGEPDFGKLTETDPELAALLRTCFTKDPADRPTAAELVEQADEKATGATWPAAVADRIGERATFAAGAPTAEHLAELERIEPAKDVATASLTPQAGKEPATAAPDPVAVTGAAAGGKRVRRNRFVMLAVPVVVATGTTLTVALGPYVIGRDTATDGASSPPSAVASQPAPGNPVPVASSSSAKPGASTSASASPSTSAGPSSAPPGGSTAAPPPPGTGDAGGGGAIPGGGNGSGSGSGSGSGSGSGSGSASGGGSKTTGPGGGGSTTTSPGGGGGGGSTTTRPAPQPSRTTTQPAPPPPPATGGSTPAGTYSIESVSNGECLAETVQYYAVMANTAECGSTTNSGTISFAWTYASNGNGTFRLINKATGHCLQPGGTPGYTAKACNGASNQSWKINTNTSAGMTIKNMNSGQCMVAGPPFVMSYTCDPGSTKQLWRNVSPV
>NZ_CP013129.1|WP_055641965.1|5153106_5153505_+|Zn-ribbon-domain-containing-OB-fold-protein
MTAADPDIDTFTRPYWDAAAEGRLLLRHCAACDRTHHYPREFCPHCWSEDVRWEPVSGRATLYTWSVVHRNDLPPFGERVPYVAAVVDLAEGPRMMTEVVDVPEAELRIGMELRVAFRAEGEVTVPVFTTGS
>NZ_CP013129.1|WP_055641966.1|5152657_5153107_+|DoxX-family-membrane-protein
MQTVWLTGAEWLAVLRIGLGLWWLESWRHKDRKGWFERGTGIAWAADVAAKHKWPQVKKGFDTVVAPRPKVMAYVVVYAELALGLGLVVGFLTPVALVGGLLLNLLYLVLMIHDWAEQGQNAMMALISLVALLAMSWQTWSLDHAIGLF
>NZ_CP013129.1|WP_055641955.1|5162247_5163111_-|XRE-family-transcriptional-regulator
MSGNVEERPERPSEVDGTAHLFRALGKIIKVLRKNAGLSQAELADIAHCSEDLVSSIERGVRIPQPDFLLRADPVLGAGGVLVAAVDDVREALAKARVRHPDWFRSFAKAEAEAVALHYYEVQAVPGVLQTPAYAHSLFEHRRPMLDEATIEKRVADRISRQALLDKWPAPTISFVLEAAVLLRPFGGPEIHREQLRRILDVARRRTIDFQIMPLDRAQHPYLDGAFTLLTPKGRRETAYTEIYGHARLITDPEEVRQYTERYGIIRSQALTQHESLNWIEKLLGER
>NZ_CP013129.1|WP_055641954.1|5163202_5163646_+|ATP-binding-protein
MKSETTTPTGEFTLRLSATRRGARLARLLAVQQLHEWGVTGPAAEAAELVVAELASNAALHGRVPGRDFEVRMGLDDDHVRIELSDTRGERRPLRVESPDEGGYGLLLVAALATTWGVKDRSVGKTVWATVPLACQNRVSRPGPRLL
>NZ_CP013129.1|WP_055641953.1|5163606_5165820_-|VCBS-repeat-containing-protein
MNHTVPGRRLAAAILTLSTVTAVAGTLVTAPAAVATTGAVVAAAGQSAEQDAVPYPGGSFAGAGPTGFLTIRLVDGERHYQWTRYKDGVTTSLPTGFYTSSLRTDTVMKADGAVYTMYDMSTGAEPLVIDVSALGDGFDRARAAGSELVATAPNSTGGRDIHVIGKQGDTLVDDTVTGLPRDAAITRVWIDSPDTAVALYTGTVDGTLKSRVAVVDLKSRSVIEEYDTGRVTATSDTALSATHVAWVEQPTDYESTLVTVRRDNGATQRLPLGLAQNVPIELVGDWLTYGKPGGYNALYDDPQHALTARSLTTGATVKLLDDLTQGLPGPEGTQVVSGGTLAEGEGLYRISAGTDGTPVAELLANSKVPTTLGLASESVPTVLDFDRTPAPVPMSWTFSRPAGIRVELTHNETKKVVRLRDYIDGSTTNSVKWDGLLDAPDHRFPAYNGDYTWRMTARPANGIGPAVERTGTFKIVRKPVPHDFDDNSTTDLLARDRSGRLYRYDAIFSMGSWPHLTPEQLGHGWGVHDQLLAPGNVGGSPAADVLGRDRSGVLWLYTGTGRALAPRVKVGGGWGVYDKLTAGSDLTGDGRPDLLATDRTGALWLYKGTGSISAPFADRTKVGGGWGAYNKIVATGNIGGGPAGDLVARDTAGVLWLYLGKGDGTFAARTRIGSGWGMYDQFIALGDADRDGRPDLLTEHPGTGNLYYYKGTGNWKAPFRPAITAYNSLGPGRLTLF
>NZ_CP013129.1|WP_055641952.1|5165836_5168077_-|VCBS-repeat-containing-protein
MQTRSSERLLRRPRHLATAVTAVLAITAGTALATTPATAAAPLAVQAPAAPLDGAITIPQAHRIVGSGPSGFLTVEFQDGIPVYRWTSTVTRTTTTLPKQSDYFAGHSDTVVTKVPATGQYLLRDMSVPGGATATVEGPTTRGHLRAVVGRTLLLSSYDAGKGELRLRSEGVGADSDRVVTGLPAETRILGAEAVSPTTAVVAYEVGPYPYTRFLAVVDVTTAQVVEKRPASPSDITADASSFAWVEGTRLRFAARGGDGTAPAKDLVTLVDEGWNFESMHVGLVGPWVTYALRVGYEDDRRSRYNPLTAVDSRNPASKVTLLDHATSTVPAADGTLLVRGGTVAHGEGVYRIAVNPATGKPAATLVARTGESTALALRKTEIPTPVDLGAPNSRSAKLSWTLSRNAFDGKVTLRHKATGLTTSFTVNSYVNPPEDGRFTIGWNGTIGESGGYAPAGDYTWELNATPDNGIGPDLRKTGTFKVVRKAGLHDFTSNTSPDVLARDTSGKLWRDDTATTDAGDVTSTGRHAVGPGWQTYNRLEAVGNLAGSAAPDIVARDASGVLWLYQGNGNGGFATRARIGSGWNAYTKLTGGSDLNGDGRSDLLATDTTGVLWFYKGTGSATAPFAGRVRIGGGWGAYNQITSVGNLAGTAAGDLVARDTAGVLWLYQGDGRGKFTTRVRVGGGWGEYTDLVGIGDADHDGRTDLYASGPYASRLYPGTGSATRPFKAGIATDIHSGPARFDSVF
>NZ_CP013129.1|WP_055641951.1|5168162_5170451_-|VCBS-repeat-containing-protein
MTRSRTSSRRHLAAAVTAVLALTAGTALVTTPALAAPVPGPAVGQTAEAIGTIPQDARVTSAGTTGFLSTVQHYDTYTTDYLWTKYADGSTTLLNRPNTGFFGQGSDIVWGHQSGSLSFSMYDMAHPSNVVGGVSMNNGTYVRGAIGSALVTTTEDRNTGAVSVAILRKGSSGAPASTPVTGIPGNANLTKVVLTTPGTAVIAYETGRDSTLRYHLAAVDTVTGEVLETRRESSLELADVSLSPTHWSWIEYYYVPDGPLGLGKRAARLHTAPRGGDEAAPTDLGIVGGGKTMHTGLLGDWVTYTRTGGFQSTATSPYYPLTARPLGGGTPVKLLDHVVSAVSDADGSLVVRGGSLTEGEGVYKVTANETGGAPIVTKVATTNTPTALGIVSQDAAPTVVDLDKSQGAKFSWTLTQPNVDGSFTLRHTRTGKTEKIFISTTDGTANPGNKATVDWSGKLVASSVDAYNGDYTWELRVKPRSGIGPELKKTGALKVVRKAAAHDFSDNGTPDILARDSAGRVWRDDITSRTPSDGVPTSSHTLLGAGWGTYSHIEAAGNVAGGSAGDVVAKDKDGNLWLYLGKGDGTFAPRTKIGPGWNAYNKITGGSDVNNDGWSDLFATDTSGVLWLYKGTGNWRTPYGGRTRVGGGWGVMNQITATGNLGGTVHGDLVARDTTGVLWLYPSTGTGTFGARVRIGGGWGGYTQLVGTGDIDGDGRADLFAYSPAGGSYVHSGTGNLSAPFAAPRMPLRVYPAGSTSYNLIG
>NZ_CP013129.1|WP_055641950.1|5170479_5172756_-|VCBS-repeat-containing-protein
MTAVLAITVGTGVAAGPVAVAAPVGATAAASSAAAAAAEDVSVPFPVGAKIAGAGATGFLTRNAGGELHWTRYETGISTEVLYAAGGGVDRTGTDILVVGDSNAPDQMRSVTLRNMAVPGTPSVHFDLGSLWARYVEALGPNSVLAKRVGSDNTEKLLIVTDENGIARDREVTGLPADASGFFADAPVLDGKILVGYETGSSELRTNARAVIDVTTGAVVETYPAGVSDTLHSLHSRLALSATHVAWTAFSEDEGIVYITVDRRTRVAKRHVFPITDEYFVGLAGNWLVYGSPSELTDNGTFPNTKIQAVDLTAGPTSEPVDIAAYANSLESAGDGSLLVRGGTVEQGEGLFKVSSSAGGELAVEKVATTEQPTALTYLGSQVPAVIDFDRDRETELKWRMSRLNADVHLKLTHKKTGQTFTRLLKLRRDFPSQHTFDDITFGITWQGLVDDLSPDDKSAFNGDYTWEFRAVPQNGIGPEVKESGTFKVVRSVKPHDYSDNGSPDLFARDLNGSLWRFDSTYDSYTRKLAPTYQRSAVGPGWNTYDRIESVGNVAGTNVADVIARDKTGVLWLYQGTGDETKPLGARTKIGPGWGVYNHLAGGSDLTGDGKADLVATDKAGDLYLYKGTGSATTPFGARKKLGGGWGGYNQLTAVGNLAGGPAGDLLARDTAGVLWLHLGKGDGTFATRVKVGAGWGGFTELIGFGDANKDGRTDLYAWNKNGPSYFYAGTGNWAAPFAGRADAELLKYAGGAYQHAL
>NZ_CP013129.1|WP_055646088.1|5172924_5173440_-|DUF664-domain-containing-protein
MNSSGLLVDSFGRVKEAVHEAVEGLTEDELAARIDPDANSVAWLVWHLTRIQDDHLAGAFDTAQLWVSDGWETRFGLPFSRRATGYGQTSAQVGAVRASAELLLGYHDAVHARTVELVGTVTNADLGRVVDTSWDPPVTLGVRLISVIADDLQHAGQAAFVRGVVERRASA
>NZ_CP013129.1|WP_055641949.1|5173445_5173850_-|DUF1992-domain-containing-protein
MTERKPPGVSFESFVDKQIREASERGEFRSLPGFGKPLPDDSAPYDELWWIKGKMHSEGASVLPPSLALRKEAEDAQEAVAAAVSESQVRRILGEINTKIAEALARPPAGPPLNLTLFDVDAVLERWRAERKLP
>NZ_CP013129.1|WP_055641948.1|5173981_5174818_+|M23-family-metallopeptidase
MRARITPLGTLLALLAGLLTALVTTTPAQAAPLFKAPYPCGQKWTYGHHSAEVRQALDFIRADGGTTAGTPVLASASGTAYRYSQPSGAGNYIVVDHGSGWKTYYFHLAAYSVANGAWVAQGQQIGTTGSTGNSSGAHIHYEQLYNGVGQPIVINGASLAPYPGSYGSKYLTSDNGCSGGGGGKYWVDTFADATGYAQANTNDAQGVLNAGTNYVSCKVWGQEVRDASGNFNHWWLRTDLDTVYAGKNGNGAYVSAYYLSRWGNDEARDNNGATIPTC
>NZ_CP013129.1|WP_030208785.1|5174938_5175142_-|cold-shock-protein
MATGTVKWFNAEKGFGFIAQDGGGPDVFVHYSAINANGFRSLEENQLVTFDVTQGPKGPQAENVTPA

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Crispr_ID: NZ_CP013129_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013129_6

6276379-6276546

Orphan

Consensus_repeat	Method
GTACGGCTACCAGCAGCAGCA	CRT

3 spacers

The CRISPR arrays of NZ_CP013129_6

>merge|NZ_CP013129|6|6276379-6276546|CRT
GTACGGCTACCAGCAGCAGCAGGAGCCCGCGTACGGCTACCAGCAGCAGCCGGACCCGTACGGCTACCAGCAGCAGCCCGACCCGTACGCCTACCAGGGCCAGTACGGCTACGAGCAGCAGCACCAGCACCAGCAGCACGAGTACCAGCCCCAGGCCCCGCAGCAGCA

>NZ_CP013129|6|1|6276379-6276546|CRT
GTACGGCTACCAGCAGCAGCA	GGAGCCCGCGTACGGCTACCAGCAGCAGCCGGACCC
GTACGGCTACCAGCAGCAGCC	CGACCCGTACGCCTACCAGGGCCA
GTACGGCTACGAGCAGCAGCA	CCAGCACCAGCAGCACGAGTACCA
GCCCCAGGCCCCGCAGCAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013129.1\|WP_003957616.1\|6269992_6270178_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP013129.1\|WP_055641136.1\|6278541_6279402_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_CP013129.1\|WP_055641142.1\|6272089_6274306_+\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
NZ_CP013129.1\|WP_055641137.1\|6277611_6278424_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP013129.1\|WP_055641135.1\|6279460_6279847_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP013129.1\|WP_055641131.1\|6282544_6282763_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_055641134.1\|6279969_6280554_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP013129.1\|WP_055641141.1\|6274383_6274968_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|367574
NZ_CP013129.1\|WP_015036438.1\|6267653_6267887_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366431
NZ_CP013129.1\|WP_055641140.1\|6274964_6275474_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_CP013129.1\|WP_055641143.1\|6269079_6269880_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|369938
NZ_CP013129.1\|WP_055641144.1\|6268120_6269083_+\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NZ_CP013129.1\|WP_055641132.1\|6281876_6282158_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|237712
NZ_CP013129.1\|WP_055641130.1\|6282999_6286545_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_CP013129.1\|WP_079037397.1\|6270321_6272049_+\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|274671
NZ_CP013129.1\|WP_055641133.1\|6280672_6281653_-\|SCP-like-extracellular	unknown	unknown	gnl\|CDD\|349398
NZ_CP013129.1\|WP_099054338.1\|6276761_6277415_+\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|376863
NZ_CP013129.1\|WP_015036448.1\|6277417_6277591_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|237038
NZ_CP013129.1\|WP_055641146.1\|6265958_6267098_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NZ_CP013129.1\|WP_055641145.1\|6267135_6267630_-\|DUF3515-domain-containing-protein	unknown	unknown	gnl\|CDD\|378794

Protein	Function_ID	Function_description	E-value
NZ_CP013129.1\|WP_003957616.1\|6269992_6270178_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	2.16015e-23
NZ_CP013129.1\|WP_055641136.1\|6278541_6279402_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	1.11209e-149
NZ_CP013129.1\|WP_055641142.1\|6272089_6274306_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP013129.1\|WP_055641137.1\|6277611_6278424_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	1.20437e-118
NZ_CP013129.1\|WP_055641135.1\|6279460_6279847_-\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.19226e-35
NZ_CP013129.1\|WP_055641130.1\|6282999_6286545_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_CP013129.1\|WP_055641134.1\|6279969_6280554_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	2.30832e-31
NZ_CP013129.1\|WP_055641141.1\|6274383_6274968_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|367574	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.	4.03375e-65
NZ_CP013129.1\|WP_015036438.1\|6267653_6267887_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|366431	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain. The l-leucine-responsive regulatory protein (Lrp/AsnC) family is a family of similar bacterial transcription regulatory proteins. The family is named after two E. coli proteins involved in regulating amino acid metabolism. This entry corresponds to the usually C-terminal regulatory ligand binding domain. Structurally this domain has a dimeric alpha/beta barrel fold.	6.79337e-09
NZ_CP013129.1\|WP_055641140.1\|6274964_6275474_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	9.23033e-100
NZ_CP013129.1\|WP_055641143.1\|6269079_6269880_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|369938	pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase. This enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes.	1.71854e-124
NZ_CP013129.1\|WP_055641144.1\|6268120_6269083_+\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	6.95658e-130
NZ_CP013129.1\|WP_055641132.1\|6281876_6282158_+\|acylphosphatase	gnl\|CDD\|237712	PRK14422, PRK14422, acylphosphatase; Provisional.	2.08271e-50
NZ_CP013129.1\|WP_079037397.1\|6270321_6272049_+\|DAK2-domain-containing-protein	gnl\|CDD\|274671	TIGR03599, YloV, DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.	1.36893e-139
NZ_CP013129.1\|WP_055641133.1\|6280672_6281653_-\|SCP-like-extracellular	gnl\|CDD\|349398	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins. Little is known about bacterial and archaeal members of the CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family. The wider family of CAP domain containing proteins includes plant pathogenesis-related protein 1 (PR-1), cysteine-rich secretory proteins (CRISPs), and allergen 5 from vespid venom, among others. Studies of eukaryotic proteins show that CAP domains have several functions, including the binding of cholesterol, lipids and heparan sulfate. This group includes Borrelia burgdorferi outer surface protein BB0689, which does not bind to cholesterol, lipids, or heparan sulfate, and whose function is unknown.	1.72999e-42
NZ_CP013129.1\|WP_099054338.1\|6276761_6277415_+\|DUF177-domain-containing-protein	gnl\|CDD\|376863	pfam02620, DUF177, Uncharacterized ACR, COG1399. This family is nearly universally conserved in bacteria and plants except the Chlorophyceae algae. Thus far, mutantional analysis in bacteria have not established a function. In contrast, mutants have embryo lethal phenotypes in maize and Arabidopsis. In maize, the mutant embryos arrest at an early transition stage.It has been suggested that family members specifically affect 23S rRNA accumulation in plastids as well as bacteria.	2.79745e-35
NZ_CP013129.1\|WP_015036448.1\|6277417_6277591_+\|50S-ribosomal-protein-L32	gnl\|CDD\|237038	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed.	1.59508e-25
NZ_CP013129.1\|WP_055641146.1\|6265958_6267098_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	3.05421e-176
NZ_CP013129.1\|WP_055641145.1\|6267135_6267630_-\|DUF3515-domain-containing-protein	gnl\|CDD\|378794	pfam12028, DUF3515, Protein of unknown function (DUF3515). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 166 to 214 amino acids in length. This protein has a conserved RCG sequence motif.	1.67115e-21

>NZ_CP013129.1|WP_055641140.1|6274964_6275474_+|pantetheine-phosphate-adenylyltransferase
MTGPESEGPTLRRAVCPGSFDPITNGHLDIIARASKLYDVVHVAVMINQSKKGLFTVDERIELIREVTADFGNVEVESFHGLLVDFCKQRDIPAIVKGLRAVSDFDYELQMAQMNIGLTGVETLFVPTNPTYSFLSSSLVKEVAAWGGDVSHLVPPQVLGRLTERLAQK
>NZ_CP013129.1|WP_055641141.1|6274383_6274968_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MTRVIAGTAGGRRLAVPPGNGTRPTSDRAREGLFSTWEAFLGTLEGTRVADLYAGSGAVGLEALSRGAVHALLVEAEPRAAKTIRDNIRTLGLPGAELRTGKAEQVVTGPAPADPYDLVFLDPPYAVADDDLREILLTLRSEGWLKDDALVTVERSTRGGEFGWPDGFEPLRARRYGEGTFWYGRAASTCEDAP
>NZ_CP013129.1|WP_055641142.1|6272089_6274306_+|ATP-dependent-DNA-helicase-RecG
MERVPALDEPLKKSLGPATAKVMAEALDLHTVGDLLHHYPRRYAERGELTTLADLPLDEHVTVVAQVADARVLTFNGSKGRGQRLEVTITDGSGRLQLVFFGKGVHKPHKDLLPGTRAMFSGKVSLFNRRLQLAHPAYELLRGDGDGDGTTASSDSVAGWAGALIPIYPATTKLESWKIAKAVDAVLPHAEDAVDPLPPALREGRGLTELPEALRKIHRPRTKADIADARDRLKWDEAFVLQVALARRRHADTQLPAVARRPVPGAILDAFDAKLPFTLTDGQQKVSREIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDAGGQAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGAERATKVVLLTGSMGTAARRQALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAADKPHFLARAWERVREEVENGHQAYVVCPRIGDEEDQKKKSRASAEDEAEKRPPLAVLEVAEKLRTGPLAGLRIAVLHGRMHPDDKDDVMRRFAAGELDVLVATTVIEVGVNVPNATAMVIMDGDRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASPARQRLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLKMLTVIDDEEVIAAAREEATSLVLADPDLTAHPGLRTALEALLDKDREEYLEKG
>NZ_CP013129.1|WP_079037397.1|6270321_6272049_+|DAK2-domain-containing-protein
MVSADLAPGPGHEEDTPGLPCGELTAEGGPLLSRALQPFEELVELDAEALRTWSARALDALGREREEIDAINVYPVADGDTGTNLYLTAEAAHQAVEAVFAAAEPDAAETVRAMAHGALLGARGNSGTILAQLLRGMAAVLAEGRDGDHLARALAEAADAARRAVAHPVEGTILTVASAAAGACTGGGALVEVAGSAYEGARTALATTRGQLDVLTRAGVVDAGGQGLVTVLGALVETVTGRAPDRPGTAPHGVLVPARPAAPERCGDGDGPAYEVIYLLEAGDAAVDLLRSRLDALGDSLVVVGGDGLWNVHVHVDDAGAAVEAGVEAGRPHRIRITHFASAAAQPDTDARGARAQRAVVAVVPGEGLAGLCAEAGATTVQTRPGEQPAGDELVDAIRRAHAREVVLLPNDTELRQTAAAAAERARAEGIRVALIPTRAAVQGIAALAVHEPDRRFDEDVVAMTAAAGATRYAELAVAERQSFTSAGVCQAGDVLGLIEGDVAVIGQDLTETARTVLDRMLSAGGELVTLIVADGTPPDLAAALEGHVRRGYLAVDTTTYHAGEGAPPLLIGVE
>NZ_CP013129.1|WP_003957616.1|6269992_6270178_-|50S-ribosomal-protein-L28
MAANCDVCGKGPGFGNNISHSHRRTSRRWNPNIQRVRAVVGRTPKRLNVCTSCIKAGKVSR
>NZ_CP013129.1|WP_055641143.1|6269079_6269880_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MTARPPLVLTVAGSDSGGGAGIQADLKTMLALGVHGMSVLTAVTAQNSRGVQGAWELPEEAVRAQYRAVVDDIGVQAVKTGMLASAGLVETVAELLAGTPAPVVVDPVGVSKHGDSLLAASALESVRRKLLPVATVATPNLDEVAQLTGVHVVYESDMRVAAEAILSYGAHWALIKGGHLPTGREAVDLLTDGTEEHWLRAPRHDNRHTHGTGCTLASAVASGLAKGLTVPEAVRQAKEYVTGAIAAGFALGSGIGPVDHGWRFRA
>NZ_CP013129.1|WP_055641144.1|6268120_6269083_+|thiamine-phosphate-kinase
MKGTVGELGEFGLIRELTSRLTSTPAVRIGPGDDAAVVSAPDRRVVASTDILLEGRHFRRDWSTAYDVGRKAAAQNLADIAAMGAVPTALLLGLVVPAELPATWPVELMDGLRDECQVAGAAVVGGDVVRGDTITIAITALGDLRNHDPVTRGGAQPGDVVAYTGWLGWSAAGYAVLSRGFRSPRAFVEAHRRPEPPYHAGPAAAGLGATAMCDVSDGLIADLGHIAEASKVRIDLRSGLIDIPTQMNDIGQAVGVDPMQWVLTGGEDHAIVATFPPDVKLPARWKVIGEVLHPSALPQVTVDGAPWHSAGGWDHFGETE
>NZ_CP013129.1|WP_015036438.1|6267653_6267887_-|Lrp/AsnC-family-transcriptional-regulator
MVQAYILIQTEVGKASTVADTISKIPGVLQAEDVTGPYDVIVRAQADTVDELGRMVVAKVQQVDGITRTLTCPVVHL
>NZ_CP013129.1|WP_055641145.1|6267135_6267630_-|DUF3515-domain-containing-protein
MSSHRPFGLPAAVTAAVLLLAATGCSWTDAGASVAVPRPPAAEAAFCQALEKELPDTVAGLERSDPEPGSELTAGWGDGAIVLRCGVPRPEKMSDPNSQAVEADGVNWMLERPEDGGTRFTSVYRKTYVEVTMDERYRHDATPLADLAASVAKTIPCGIDPECF
>NZ_CP013129.1|WP_055641146.1|6265958_6267098_+|D-alanine--D-alanine-ligase
MSENTQSPRKPRVAVVFGGRSSEHAISVVTAGAVLSAIDRDKYDVLPIGITTDGRWALTADAPERMAIADRALPNVADLAESEEGGVVLSVDPANREVVLSEPGSVPRALGEVDVVFPMLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFVSFGLPVGPYEVIRPREWEQNPAAARKKIVEFAAEHGWPLFVKPARGGSSMGITKVDDLGGLDEAIEEARRHDPKILVESLLRGREIECGVLEFEDGPRASVPAEIPPVTDHDFYDFEAKYIDSASGIVPAPIGDEATAEVQRLAVAAYEAISCEGLVRADFFLTEDGDFVINEVNTMPGFTPISMYPRMWQESGVGYPELVDRLIQAALTRSTGLR
>NZ_CP013129.1|WP_099054338.1|6276761_6277415_+|DUF177-domain-containing-protein
MSTRLDHRNPLVFDTHELGRRPGALQRLSRSVEAPAALGVEGVIGVPEGAPVEIDLRLESVMEGVLVTGTARASAEGECVRCLEPVELELDVDFQEMFSYPDSDDRGRSKAAADDEAEEGEDMIPLEDGMFDLEPLLRDAVVLALPMQPVCRDDCAGLCSECGANLNENPDHHHDVVDARWAALQGLAGSLGTDEKDNMSGKASDGDVRSAAEKQEK
>NZ_CP013129.1|WP_015036448.1|6277417_6277591_+|50S-ribosomal-protein-L32
MAVPKRKMSRSNTRHRRSQWKAAVPTLVSCERCQEPKLQHIACPSCGTYNKRQVLSV
>NZ_CP013129.1|WP_055641137.1|6277611_6278424_+|ribonuclease-III
MSESRKTDDKTDHASSHTLLEGRLGYRLESALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSSLGAGLDWKTSLQELTAAEGLGVPEYLVTEEGPDHEKVFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAIRAAADERVAAAKAAAEAGKGEVADPSPSTDGATA
>NZ_CP013129.1|WP_055641136.1|6278541_6279402_+|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVEVVRRGLERWVAGRTVTEVEVLHPRAVRRHPAGGADFAARLKGQRFEVARRRGKYLWLPLAETGTSVLGHLGMSGQLLVQPEDAADEKHLRIRIRFDDAAGTELRFVDQRTFGGLSLHDQTPDGLPDVIAHIARDPLDPAFDEAAFHRALRLRRTTVKRALLDQSLISGVGNIYADEALWRSRLHYDRPTATLTRPRSAELLGHARDVMNEALAVGGTSFDSLYVNVNGESGYFDRSLDAYGREGEPCHRCGTPMRRRPWMNRSSYFCPRCQRPPRPSA
>NZ_CP013129.1|WP_055641135.1|6279460_6279847_-|transcriptional-regulator
MTDDLAYDVFARACPSRGTLEHVTGRWGSLTLGALYDGTFRFNELRRRVDGVSEKMLSQTLHALERDGLVHRDAQPTNPPRVDYRLTPLGREIAERLIGLIELVEGRMPQVEAARESYDAERTAPVTS
>NZ_CP013129.1|WP_055641134.1|6279969_6280554_+|flavodoxin-family-protein
MTTPVVSIAYHSGYGHTAVLAEAVRAGAADAGATVHLINVDGITDAEWELLDSSDAIVFGSPTYMGTASGAFHQFAEATSKRWFSDAWLDKLAAGFTNSGSKSGDKLHTLQFFQTLAGQHGMTWVNLGLKPGWNSSEASENDLNRLGFFSGAGAQTHTDLGPDGVHKADVATAEHLGHRVAVTARTFAAGKLAA
>NZ_CP013129.1|WP_055641133.1|6280672_6281653_-|SCP-like-extracellular
MGRHRRSGSAPAAEDYAAGTDRRHQGDRRTWRSTPVRTGLLGVSAAVAVGAVAVTSGLLPGGDTFTVGNAGSGERQIQSRQAPELTTQGGATQTPAGGESGGTGSGTAATAGSGSGKSPSARPSASASKSASAKPSTKPSTKPSAKPSPKATPSKAATSAKPVAPKVPVAPTTKPAAPRPAPDPTTEAPVETTAAPSTADRGEAAEAEVVRLVNVERAKVGCTPVRSDAQLAALAGAFSTDMAQRGFFDHTDPDGDTPWARAEQAGVTGLGGENIARGQADAAAVMESWMNSDGHRANIMNCDFTTLGVGVHFGDGGPWWTQDFGR
>NZ_CP013129.1|WP_055641132.1|6281876_6282158_+|acylphosphatase
MSDDVRMTAWVRGRVQGVGFRWFTRANALEIGGLVGFALNLDDGRVQVVAEGPSENCHRLLDWLRTGDTPGRVDGVTEIWGNPRGGYESFAIR
>NZ_CP013129.1|WP_055641131.1|6282544_6282763_+|hypothetical-protein
MAKALLGYVGGSDPRLLAEMRRLQQRVQDLESELVRIQSENDTLAAAAAQHQGESLLDSIDLDVPQAEPALT
>NZ_CP013129.1|WP_055641130.1|6282999_6286545_+|chromosome-segregation-protein-SMC
MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGKMEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIDYAEVTITRIMFRGGSSEYQINGDTCRLLDIQDLLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEASGVLKHRKRKEKALRKLDAMQANLARVQDLADELRRQLKPLGRQAAVARRAVVIQADLRDARLRLLADDLDRLQRALTAEVADEAALLARKEATGVELRDALAREAELEAEVRALAPRLERAQQSWYALSQLAERVRGTISLADARVKSADDAPAEERRGRDPEDLEREADRVREQEAELEAALEAAERALEDTVAHRAELERALTAEERRLKDVARAIADRREGLARLHGQVNAARSRAAAAQAEIDRLAAARDEAADRAVAAQEEYEQLTAEVEDLDAADDRHGERYEAARRELAEADSALSAARDALGTAERSRAATRARHDTLALGLRRKDGTGALLSAGVSGLLGPAAELLTVAPGYEIPVAAALGAAADAVAAIGPAAAAEALRLLRKQDAGRASLLLTDAPEPPPGPGADGCPSAADLVRGPAELLPAVRRLLAGVVVVDDLDEAERLVRSRPGLTAVTAEGDLLGGHFAHGGSAGAPSLLEVQASVAEAAAELDELTVRCAELTTAQREADERRRSAGALVEELDANRRAAEREKSAVATELGRLAGQARGAAGEAERTAAAVARAQEALEKAVSEAEELAERLLVAQEATAFGDAEDEPDTSVRDRLSIDGSNARQTEMEARLQVRTHEERVKGLAGRADSLDRAARAEREARARAEQRRTRLRHERRVAGAVAAGARGLLAHVEVSLVRAERERVAAQAARADREQGLTVARARARDLKAELDKLTDSVHRGEVLGAEKRMRIEQLEAKALEEFGVEATALVAEYGPDQPVPPSPSVDGEEHPEEAGTARPFVRSEQEKRLRTAERAYHQLGKVNPLALEEFAALEERHRFLSEQLEDLKKTRTDLLQVVKEVDVRVEQVFTEAYRDTAREFEGVFSRLFPGGEGRLILTDPDNMLTTGVDVEARPPGKKVKRLSLLSGGERSLTAVALLVSIFKARPSPFYVMDEVEAALDDTNLQRLIRIMEELQESSQLIVITHQKRTMEVADALYGVSMQGDGVSKVISQRLR

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Crispr_ID: NZ_CP013129_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013129_7

7217763-7217997

Orphan

Consensus_repeat	Method
CGGAGCCTGCCCGGCCCGAGGCCG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP013129_7

>merge|NZ_CP013129|7|7217763-7217997|CRISPRCasFinder
GGGAGCCCACCAGACGCGAGCCCGCCCGGCCGGAGCGCGCCAGACGCGAGCCCGCCCGGCCGGAGCCTGCCCGGCCCGAGGCCGTCTGACTGCTCCGTCCGGGCGGAGCTCCAGCTGAGCGGAGCCCGCCCGGCCCGAGGCCGCCTGACGTTAGTGCCGTCCGGACGGAGTCTGTCCGGCCTGGGCTCGGCTGAGCGGATCCCTGCCTGGCCCGGGCCCGTCCGGCCCGGGCCCG

>NZ_CP013129|7|6|7217763-7217997|CRISPRCasFinder
GGGAGCCCACCAGACGCGAGCCCG	CCCGGCCGGAGCGCGCCAGAC
GCGAGCCCGCCCGGCCGGAGCCTG	CCCGGCCCGAGGCCGTCTGACTGCTCCGTCCGGGCGGAGCTCCAGCTGAG
CGGAGCCCGCCCGGCCCGAGGCCG	CCTGACGTTAGTGCCGTCCGGA
CGGAGTCTGTCCGGCCTGGGCTCG	GCTGAGCGGATCCCTGCCTGGC
CCGGGCCCGTCCGGCCCGGGCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013129.1\|WP_055640470.1\|7207846_7208848_-\|sphingomyelin-phosphodiesterase	unknown	unknown	gnl\|CDD\|132436
NZ_CP013129.1\|WP_055645922.1\|7212331_7214368_+\|Xaa-Pro-dipeptidyl-peptidase	unknown	unknown	gnl\|CDD\|235435
NZ_CP013129.1\|WP_055640462.1\|7218135_7219773_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP013129.1\|WP_055640456.1\|7225888_7226527_+\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153233
NZ_CP013129.1\|WP_055640465.1\|7215862_7216165_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_055640458.1\|7223707_7224574_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_055640460.1\|7220514_7220916_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_055640453.1\|7228092_7228713_-\|isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl\|CDD\|235156
NZ_CP013129.1\|WP_099054349.1\|7227569_7228127_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP013129.1\|WP_079037336.1\|7214373_7215744_+\|carboxypeptidase	unknown	unknown	gnl\|CDD\|349461
NZ_CP013129.1\|WP_055640464.1\|7216246_7217203_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|334462
NZ_CP013129.1\|WP_055640468.1\|7209636_7210521_+\|DUF2236-domain-containing-protein	unknown	unknown	gnl\|CDD\|378343
NZ_CP013129.1\|WP_055640463.1\|7217285_7217747_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013129.1\|WP_055640461.1\|7219783_7220518_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224956
NZ_CP013129.1\|WP_055640457.1\|7224753_7225725_+\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP013129.1\|WP_055640467.1\|7210540_7212112_-\|M1-family-peptidase	unknown	unknown	gnl\|CDD\|341066
NZ_CP013129.1\|WP_055640469.1\|7209006_7209495_+\|ATP-synthase-F0-subunit-B	unknown	unknown	gnl\|CDD\|180240
NZ_CP013129.1\|WP_055640455.1\|7226543_7227287_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NZ_CP013129.1\|WP_055640459.1\|7220993_7223426_-\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NZ_CP013129.1\|WP_055640471.1\|7207332_7207818_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013129.1\|WP_055640470.1\|7207846_7208848_-\|sphingomyelin-phosphodiesterase	gnl\|CDD\|132436	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins. [Cellular processes, Pathogenesis].	2.18272e-111
NZ_CP013129.1\|WP_055645922.1\|7212331_7214368_+\|Xaa-Pro-dipeptidyl-peptidase	gnl\|CDD\|235435	PRK05371, PRK05371, x-prolyl-dipeptidyl aminopeptidase; Provisional.	0
NZ_CP013129.1\|WP_055640462.1\|7218135_7219773_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	2.26097e-139
NZ_CP013129.1\|WP_055640456.1\|7225888_7226527_+\|DJ-1/PfpI-family-protein	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	9.9334e-79
NZ_CP013129.1\|WP_055640459.1\|7220993_7223426_-\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_CP013129.1\|WP_055640453.1\|7228092_7228713_-\|isopentenyl-diphosphate-Delta-isomerase	gnl\|CDD\|235156	PRK03759, PRK03759, isopentenyl-diphosphate Delta-isomerase.	2.94832e-88
NZ_CP013129.1\|WP_099054349.1\|7227569_7228127_+\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	4.43449e-14
NZ_CP013129.1\|WP_079037336.1\|7214373_7215744_+\|carboxypeptidase	gnl\|CDD\|349461	cd06242, M14-like, Peptidase M14-like domain; uncharacterized subgroup. Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	4.48824e-69
NZ_CP013129.1\|WP_055640464.1\|7216246_7217203_-\|FAD-binding-oxidoreductase	gnl\|CDD\|334462	pfam01266, DAO, FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.	1.41685e-24
NZ_CP013129.1\|WP_055640468.1\|7209636_7210521_+\|DUF2236-domain-containing-protein	gnl\|CDD\|378343	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236). This domain, found in various hypothetical bacterial proteins, has no known function. This family contains a highly conserved arginine and histidine that may be active site residues for an as yet unknown catalytic activity.	1.14389e-55
NZ_CP013129.1\|WP_055640461.1\|7219783_7220518_+\|hypothetical-protein	gnl\|CDD\|224956	COG2045, COG2045, Phosphosulfolactate phosphohydrolase and related enzymes [Coenzyme metabolism / General function prediction only].	3.42861e-23
NZ_CP013129.1\|WP_055640457.1\|7224753_7225725_+\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.39495e-94
NZ_CP013129.1\|WP_055640467.1\|7210540_7212112_-\|M1-family-peptidase	gnl\|CDD\|341066	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains mostly bacterial and some archaeal M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	2.01845e-158
NZ_CP013129.1\|WP_055640469.1\|7209006_7209495_+\|ATP-synthase-F0-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	5.67255e-23
NZ_CP013129.1\|WP_055640455.1\|7226543_7227287_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	9.5382e-63

>NZ_CP013129.1|WP_055640463.1|7217285_7217747_+|hypothetical-protein
MPSAYTTFDLTRPHRDTSDLVVDGRPLLHRLDEVDGVDAVSPLAADLPPALRADSVRTLLHATGRRIVHSCPDCEDPGCGAVTAVVEHDGEDVVWRDFAWQTGDLADPVDLDRDGYPGVGPYRFRGDTYRSVLLRLLDGATTESHGDARLAAA
>NZ_CP013129.1|WP_055640464.1|7216246_7217203_-|FAD-binding-oxidoreductase
MDSDVIVVGGGVVGLTTAVTLAERGLRVRVWSRDEVTATTSAVAGALWWPYRIEPAAQAGAWALASLRVYGELAADPKRTGVRWVAGVHADTVLDALGPWAKEVPGLRQLAPEEVPGPYGTGLAARLPLIDMPVHLRWLRGRFEASGGVFERRTVTGFAEAAARARVVVDCTGLGARELVPDAGLLPVRGQLVLVENPGVEEWFTAADEGAGETTYFFPQPGRLVLGGTAEEGSERLDADPVTAAAIVARCARVRPEIAGARVLGHRVGLRPARAGGVRIEAVPLPGGGRLVHHYGHGGAGVTVAWGCAERAAELVGG
>NZ_CP013129.1|WP_055640465.1|7215862_7216165_+|hypothetical-protein
MRHTMALRRTLTAVLTTTLLAGGVLLGQTAAAEPAAAARITCNIDKLRSDAHKERTRAAQLRGLGAMAEARKAAARADALERRAQQCHDAENNNRPPLWK
>NZ_CP013129.1|WP_079037336.1|7214373_7215744_+|carboxypeptidase
MRPTNPTDPTSPLNPTSPTTPTRLRTAHRSSRRVLALAAGAAVLTLPLVTVPAKAADSAPPRPLPRTGFETSLGARWTTEAEERDFLAAVDRGSDRVSLRTIGTTSQGRPLRLATLGTGRTTVLLVCSQHGDEPAGREACLSTLRDLSTARDAETSRFLARTTLLVVPTANPDGREADTRGNGDGIDVNRDHLALRTAEARAVAAVIRDRRPELVYDLHEYGATPRYYDKDLLALWPRSLDADPHVHDESRTLSESYVRPAAGLAGYSTGIYGIWTDPLTGKPLKQVAGDGQERILRNTAGIKHAAGLLVETRVDALDEIEKDDPARNHRRRVATQRVALEGMFAYVDERRGPLTAVTAAARLRGFADRGPVFLGGADNDPPEPGEILADPPCGYRLDAAQYAEAGDELALHGVLVRPDGAGVFVPLRQSQRALVPLLLDGRATYHLVSGSPVKEC
>NZ_CP013129.1|WP_055645922.1|7212331_7214368_+|Xaa-Pro-dipeptidyl-peptidase
MRKRRTRGARLPYGTLVAAATAALLATLVTPAGASPEPSAPTALTAPSAGSPRESRPVHSYADAIRESVWVDTGLDGDADGRTDRVAVDIIRPREPAAAGRKIPVIMDASPYYACCGRGNESQKKTYDADGNPVQFPLFYDNYFVPRGYAFVGVDLAGTNRSDGCDDVGGRSDVRSAKAVVDWLNGRARGYTTRTGTTRAGATGWSTGNVGMIGKSWDGTVANGVAATGVEGLKTIVPIGAISSWYDYFHSQGAPLYNANPSWLSDYVSSPDARARCGAVQERIAAATPYSGDWTPAWSERDHVRDASKVKASVFVVHGQQDLNVRAKQFGQWWDALAAQGVERKIWLSQTGHVDPFDFRRADWVRTLHRWFDHYLLGYDNGIDREPVADIERAPDRWTTDRQWPPRGTAATTLRPAAGTEPGVGTLGRTPAATGSTATFTDDPALGELDWAARVDSPTPEKAGFVTRPLSRDLRISGSSKVTVTATPTTATAHLSAVLVDLGPDTIRDYGAVGEGITTLADRSCWGASTPGDSACFKETRANTADVGYTVVSRGWADLGTWADPREERPLTPGRAYTLTLDLASADHVVPAGHRLALIVGGTDRDLIDPPSTTPTLTLDLGRTSAKLPLVGGPAAFARATTGPAPALPAPAARPSLTGPVPPAAVGGPRLPASGAAR
>NZ_CP013129.1|WP_055640467.1|7210540_7212112_-|M1-family-peptidase
MHRRIIVPSALAASLLLAIPASAADFAPGAPGIGDSYYPASGNGGYDVSHYDLRLKYQPETDLLEGTATIVATTKQNLSRFNLDLGLKVSEVRVNGRLAKFATSGDHELEVTPAVPLEKNKAISVVVRYAGKPSEFKVDGWSAWARTPDGGVAAQEPDSAVWWFPSNDHPLDKATFDVSVSVPDGTQAISNGVLQSQSSRLGWTRFNWRSNKPQATYLATLAVGKFDITTDKTANGLPVLNAYSKDLGDNAGAARASIERTTEVAEWLEGVFGPYPFNSLGGYVPNVTSGFALETQTRPFYSPRQFANGANVSVVVHELAHQWYGDSVSVRDWKDIWVNEGFARYSQWLWSEKEGEGTAQELADYVYATRTAEDPFWTVKPGDPGAENQFHIAVYDRGALALQALRNEIGDEDFFAILKGWPQEFAYGNARVGDFVRYAERVSGKPLAGLFDTWLYQPSKPAASTAAAAGLSAPKAAAPASGPAARSAARSAAPKPVQPKSWKKIAATNTVHDHDEHEGHGKH
>NZ_CP013129.1|WP_055640468.1|7209636_7210521_+|DUF2236-domain-containing-protein
MSHPQQPAARTPAGDPAPPPVGGVLWSIAGDIRALLMLPAALTMQVAHPAIGAGVDEHSVFRTDPWGRGERSLRSVQLWVYGGEAAAEEGRRLRRLHRDIQGTDAHGRTYHALTPAYYSWVHATGFPVYRYGLGLLARPLTDAQERQLYAEWLQVGRVLGIHDRDMPQTIDEFWPYYRKVLADELEATVVVRELLDPDLPVPAPDRGPLPLRLALRLVWPALRRPFLRLRAFLTVGLMPPDAREAIGLEWTDAQERTLRRFARVVRAVVPVLPERLRYLPLARTAREAARRAKR
>NZ_CP013129.1|WP_055640469.1|7209006_7209495_+|ATP-synthase-F0-subunit-B
MTLASNPTVFEMDLGPLNPVWAELILGVVLFALTFLILAKGILPKIRRTLDEREDAIDGGTERADDLRSEATQIREQYEAELAEARHEAARIRSAAIEEGSAAIAAARAEGSAERDAIISAGAAKIATERAAAERELTADVDAWAHALAARIVGEPVGADRS
>NZ_CP013129.1|WP_055640470.1|7207846_7208848_-|sphingomyelin-phosphodiesterase
MGVPVSFAVLRRAPGAALSLALAAATLAATAPAAGAASAATAETPRLKVLSYNTFLFSKALYPNWGQDHRAKAIPAASFFQGQDVVVIQEAFDNSSSDALKANAAAQYPHQTPVMGRSKTGWDATGGSYSATTPEDGGVTILSKWPIVRKEQYVYKDACGADWYSNKGFVYTVLDVNGSRVHVVGTHAQSTDPGCSAGEAAQMRSRQFKAMDAFLDAKNIPANEQVIVAGDMNVDSRTPEYGTMLADAGLVGADARTGHTYSFDTDVNSIASERYPDDPREDLDYVLHRAGNARPAGWTNHVVLEESAPWTVSSWGTRYTYTNLSDHYPVTAF
>NZ_CP013129.1|WP_055640471.1|7207332_7207818_+|hypothetical-protein
MYVQLRETADELARVLWREHTVYRERGGGVVIRGEHVRRWISLAPTGGKDRALLRAGRILDGGTTAPARSEIVVDLTSGTAELATICRRLLADVAAGADAAPGPSRAGRPKEKAGKPGKQAKPGRRPRGSRHTSPGSWFVLLCVAAVLGAWLYSLFGRAGY
>NZ_CP013129.1|WP_055640462.1|7218135_7219773_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MTATLVAKDLAAGHGERTLFAGLDLVVAPGDVIGLVGVNGAGKSTLLRLLAGLDTPEEGELRLSPPTASVGHLPQEPERRAGETVREFLARRTGVLAAQTAMDEATQGLVDGTPGADDAYATTLERWLNLGGADLDERAEEVADSLGLTVGLDQPMTSLSGGQAARAGLASLLLSRYDVFLLDEPTNDLDLDGLERLEAFVKGLRAGTVVISHDREFLTRTVTKVLELDLAQQQITLYGGGYDAYLDERDTARRHAREDFEEYAGKKAALEARGHMQRSWMTQGVKNARRKATDGDKLGRNARSEASEKQASKARQTQRMIERLDVVEEPRKEWELRMEIAAAPRSGSVVATLREAEVRRGDFAFGPVTLQIDWADRVAVTGANGAGKSTLLAALLGRLPLDSGDTVVGSGVVVGEVDQARKLFHGTEKLLEAFCAAVPDTEPAEVRTLLAKFGLKAEHVLRPATTLSPGERTRAALALLQGRGVNLLVLDEPTNHLDLPAIEQLESALDSYTGTLLLVTHDRRMLDAVRTTRRIEVADGKVTEL
>NZ_CP013129.1|WP_055640461.1|7219783_7220518_+|hypothetical-protein
MTISFGWGPVEARALARAAACVVVVDVLSFTTSVGVAVEAGAAVHPYRWRDATAAAYADRVGATLAVGRGEATPDHPWTLSPAALRAAPMPPRLVLPSPNGSTIAAEAEGYGATVVAASLRNRTAVARWLADRGYGSADRPLAVIASGERWPDGSLRPALEDLLGAGAVLSALAGTGTPTPEASAAATLWTATEDPVAALHGCDSGRELYEYGFPQDVAVAAETDSSTTVPVLVDGAFQEASAP
>NZ_CP013129.1|WP_055640460.1|7220514_7220916_+|hypothetical-protein
MTDLLTRLTEMLDDLDSDVDETIDLADEIAASGDAGLLPRLQAELDRALTDRNAYARELLGGVLAAIGGPDALPTLIRASAVDLGDDQDGLAAEIVDLVQADPNTAAAVLRPLTEDDDLSIANRAEWALRFVP
>NZ_CP013129.1|WP_055640459.1|7220993_7223426_-|RNA-binding-transcriptional-accessory-protein
MTTSIEARIAEELGVRERQVKAAVELLDGGSTVPFIARYRKEATEMLDDAQLRTLEERLRYLRELEDRRAAILDSVREQGKLTEELEARIRAADTKARLEDIYLPFKPKRRTKAQIAREAGLTPLAEGLLSDPSVEPTAAAAAFVDADKGVADAAAALEGARAILTEKFSEDADLIGELRERMWGRGRLAAKVREGQEEAGSKFADYFDFAEPFTALPSHRVLAMLRGEKEDVLSLDLEPEEPSETPGPSSYEGIVAHRFGVADRGRPGDKWLQDTVRWAWRTRILVHLGIDLRLRLRTAAEDEAVRVFAANLRDLLLAAPAGTRATLGLDPGFRTGVKVAVVDATGKVVATDTIYPHVPANKWDQALDKLARLAKQHAVELVAIGNGTASRETDKLAAELLAKHPELNLTKVMVSEAGASVYSASAFASQELPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDLAEVKLSRSLDAVVEDCVNGVGVDVNTASTPLLSRVSGISSGLAENIVAHRDANGPFRSRKALKDVARLGPKAYEQCAGFLRIRDGDDPLDSSSVHPEAYPVVRRMAKSTGGQVAALIGDTGTLRSLRAGDFVDETFGLPTVTDILRELEKPGRDPRPAFKTATFKEGVEKIGDLASGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSRTFVKDPRDVVKPGDVVKVKVMDVDIPRKRISLTLRLDDEAGADAQGGAPKRGERGGDRADRGGRPPQQRQGGGAGGGGGGGRRSERGGRDDRGGRDRSSAPAPGNSAMADALRKAGLLGEGGKRK
>NZ_CP013129.1|WP_055640458.1|7223707_7224574_-|hypothetical-protein
MTTALPPRAGRRCHNALNPLHSTLYFSPDLDREFGALGFTDQSAMRLAARSAALGAVGAGTVAATFYNYNHELLSRHLPAVWDIASPADVLAARLRTVDATLRRLLGEDTVSSPEMAEAAMLALRATEACTRHARPLYSAHADLPVPEAPHLAYWYAATLLREHRGDGHLAALLTVGLDPVEALVSHTATGKGMAPRWVLGSRGWKRADWEAATERLRGRGLLDAEGELTEAGTALRDELEERTDLLDSAPYEHLGAAGVERLTELGRGFLVTAAVAGAFPADLVGKG
>NZ_CP013129.1|WP_055640457.1|7224753_7225725_+|GlxA-family-transcriptional-regulator
MTQRSVLVVLFDGVQSLDVTGPFEVFAGAARAAGDPDAYLIRTASLDGGPVRTHSGLRLLPDTTLEEAVAEGPPHTLVVPGGEGTREPDPALLDWLRTHAPRAGRLVSVCTGALLLAEAGLLDGHRATTHWIACDHLARHYPEVDVEPDPIFVRDGRLSTSAGVTAGIDLALALVEEDLGRDVALTVARHLVVFLRRPGNQAQFSVQLAAQTAQREPLRDLQQWITEHPGGDLSVEALAARARLSPRHFARAFQAETGTTPGRYVDLVRLEHARRLLEETSRGVEEVSRTSGYGTPEAMRRAFVKALGTAPAEYRRRFHAVLP
>NZ_CP013129.1|WP_055640456.1|7225888_7226527_+|DJ-1/PfpI-family-protein
MQIAILLYDRFTTLDAVGPYELLARLPGAETVFVAKEAGPVRNDQGSLALVADKSLAEVPSPDIVLVPGGPDARVAMHDPETLDWLRAADATSTWTTSVCTGSLILAAAGLLEGRRATTHWLAFDELRAQGVEPTGERVVFDGKYVTAAGVSSGIDMALHLLGRIAGDEVAQTIQLLTEYDPQPPYDAGSPEKAPAAIVAHWRGEKLPVREG
>NZ_CP013129.1|WP_055640455.1|7226543_7227287_-|enoyl-CoA-hydratase/isomerase-family-protein
MEPQLKDSVTDGIATVVIANPAKRNAMSAAMWRALPGVLDRLAADRTVRALVLTGEGDTFCAGADISTLREPGDEQQSLAVRAEEALAAFPKPTLAAVRGFCVGGGSQLAAACDLRFAEEGARFGITPSKLGIVYPSSSTRRLTALVGPSTAKYLLFSGELMDTERALRTGFVDEVHPAGELDKRVAEFARVLVSRSLLTQAAAKEFADGRADRDAHWAEQARGSGDTAEGVAAFLERRAPRFTYGV
>NZ_CP013129.1|WP_099054349.1|7227569_7228127_+|ATP-binding-protein
MARIEHEGGNRTVDTHGGVPTRSPSYEGVWRFTAPAVDVSVPQARHAVRDLLVRQRVPVHDEIMDGLLLIVSELVTNAVRHAALLSPEIAVEVAIGPEWIRVSVEDNHPYRPKALEADYGQTGGRGLLLVREVAQEAGGACDVEHTASGGKIIWAALPLAPMAPGPGGAPHVPMVTSPRTDPSAP
>NZ_CP013129.1|WP_055640453.1|7228092_7228713_-|isopentenyl-diphosphate-Delta-isomerase
MPTTPATVAQISPEITSNGVQPSGAPAPIMLELVDEDGTTIGTAEKLAAHQAPGQLHRAFSVFLFDESGRLLLQRRALGKYHSPGVWSNTCCGHPYPGEAPFAAAARRTFEELGVSPTLLAEAGTVRYNHPDPASGLVEQEFNHLFVGLVQAEPKPDPEEIEDTAFVTAAELAERHAAAPFSAWFMTVLDAARPAVRELTGPSGGW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013129_7	7.1\|7217787\|21\|NZ_CP013129\|CRISPRCasFinder	7217787-7217807	21	NZ_CP013129.1	3504639-3504659	2	0.905

1. spacer 7.1|7217787|21|NZ_CP013129|CRISPRCasFinder matches to position: 3504639-3504659, mismatch: 2, identity: 0.905

cccggccggagcgcgccagac	CRISPR spacer
cccggccgccgcgcgccagac	Protospacer
********  ***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	GU071090	Cyanophage PSS2, partial genome	54968-54991	2	0.917
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	GQ334450	Cyanophage PSS2, complete genome	56263-56286	2	0.917
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	KJ010548	Bacillus phage Bp8p-T, complete genome	36682-36705	2	0.917
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	NC_029121	Bacillus phage Bp8p-C, complete genome	36680-36703	2	0.917
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	NZ_CP015805	Borrelia mayonii strain MN14-1539 plasmid lp28-10	7921-7944	2	0.917
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	NZ_CP015790	Borrelia mayonii strain MN14-1420 plasmid lp28-10, complete sequence	7921-7944	2	0.917
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	NZ_CP015790	Borrelia mayonii strain MN14-1420 plasmid lp28-10, complete sequence	9774-9797	2	0.917
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	MH445500	Alteromonas phage JH01, complete genome	45915-45938	2	0.917
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	MH445500	Alteromonas phage JH01, complete genome	45954-45977	2	0.917
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	MH445500	Alteromonas phage JH01, complete genome	46080-46103	2	0.917
NZ_CP013129_7	7.1\|7217787\|21\|NZ_CP013129\|CRISPRCasFinder	7217787-7217807	21	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	556655-556675	2	0.905
NZ_CP013129_6	6.2\|6276457\|24\|NZ_CP013129\|CRT	6276457-6276480	24	MN062708	Mycobacteriumphage NothingSpecial, complete genome	34415-34438	3	0.875
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	KM879463	Arthrobacter phage vB_ArtM-ArV1, complete genome	15753-15776	3	0.875
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	NZ_CP040820	Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence	22972-22995	3	0.875
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	MT939487	Erwinia phage pEa_SNUABM_47, complete genome	346190-346213	3	0.875
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	NC_019401	Cronobacter phage vB_CsaM_GAP32, complete genome	198261-198284	3	0.875
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	84509-84532	4	0.833
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	NZ_CP024582	Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence	342788-342811	4	0.833
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	MK931297	Escherichia phage vB_EcoP_3HA13, complete genome	48115-48138	4	0.833
NZ_CP013129_6	6.3\|6276502\|24\|NZ_CP013129\|CRT	6276502-6276525	24	MH992123	UNVERIFIED: Escherichia phage OLB145, complete genome	48147-48170	4	0.833

1. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to GU071090 (Cyanophage PSS2, partial genome) position: , mismatch: 2, identity: 0.917

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccagcagcaagagtaccg	Protospacer
*************** *******.

2. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to GQ334450 (Cyanophage PSS2, complete genome) position: , mismatch: 2, identity: 0.917

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccagcagcaagagtaccg	Protospacer
*************** *******.

3. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to KJ010548 (Bacillus phage Bp8p-T, complete genome) position: , mismatch: 2, identity: 0.917

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccagcagcaccagcacca	Protospacer
**************** **.****

4. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to NC_029121 (Bacillus phage Bp8p-C, complete genome) position: , mismatch: 2, identity: 0.917

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccagcagcaccagcacca	Protospacer
**************** **.****

5. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to NZ_CP015805 (Borrelia mayonii strain MN14-1539 plasmid lp28-10) position: , mismatch: 2, identity: 0.917

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccagcagcaccagcacca	Protospacer
**************** **.****

6. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to NZ_CP015790 (Borrelia mayonii strain MN14-1420 plasmid lp28-10, complete sequence) position: , mismatch: 2, identity: 0.917

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccagcagcaccagcacca	Protospacer
**************** **.****

7. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to NZ_CP015790 (Borrelia mayonii strain MN14-1420 plasmid lp28-10, complete sequence) position: , mismatch: 2, identity: 0.917

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccagcagcaccagcacca	Protospacer
**************** **.****

8. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to MH445500 (Alteromonas phage JH01, complete genome) position: , mismatch: 2, identity: 0.917

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccagcagcaccagcacca	Protospacer
**************** **.****

9. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to MH445500 (Alteromonas phage JH01, complete genome) position: , mismatch: 2, identity: 0.917

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccagcagcaccagcacca	Protospacer
**************** **.****

10. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to MH445500 (Alteromonas phage JH01, complete genome) position: , mismatch: 2, identity: 0.917

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccagcagcaccagcacca	Protospacer
**************** **.****

11. spacer 7.1|7217787|21|NZ_CP013129|CRISPRCasFinder matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.905

cccggccggagcgcgccagac	CRISPR spacer
ggcggccggagcgcgccagac	Protospacer
  *******************

12. spacer 6.2|6276457|24|NZ_CP013129|CRT matches to MN062708 (Mycobacteriumphage NothingSpecial, complete genome) position: , mismatch: 3, identity: 0.875

cgacccgtacgcctaccagggcca	CRISPR spacer
cgacccgaacgcctaccaggcccg	Protospacer
******* ************ **.

13. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to KM879463 (Arthrobacter phage vB_ArtM-ArV1, complete genome) position: , mismatch: 3, identity: 0.875

ccagcaccagcagcacgagtacca	CRISPR spacer
ccaccaccagcggcacgagtaccg	Protospacer
*** *******.***********.

14. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to NZ_CP040820 (Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence) position: , mismatch: 3, identity: 0.875

ccagcaccagcagcacgagtacca	CRISPR spacer
tcagcaccagcagcaccagtgcca	Protospacer
.*************** ***.***

15. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to MT939487 (Erwinia phage pEa_SNUABM_47, complete genome) position: , mismatch: 3, identity: 0.875

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccaccagcaccagtacct	Protospacer
********* ****** ******

16. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to NC_019401 (Cronobacter phage vB_CsaM_GAP32, complete genome) position: , mismatch: 3, identity: 0.875

ccagcaccagcagcacgagtacca	CRISPR spacer
gcagcagcagcagcaggagtacca	Protospacer
 ***** ******** ********

17. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 4, identity: 0.833

ccagcaccagcagcacgagtacca	CRISPR spacer
tcagcaccagcagcccgagtacgg	Protospacer
.************* ******* .

18. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to NZ_CP024582 (Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.833

ccagcaccagcagcacgagtacca	CRISPR spacer
tcagcaccagcagcccgagtacgg	Protospacer
.************* ******* .

19. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to MK931297 (Escherichia phage vB_EcoP_3HA13, complete genome) position: , mismatch: 4, identity: 0.833

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccagcagcaggagtaaag	Protospacer
*************** *****  .

20. spacer 6.3|6276502|24|NZ_CP013129|CRT matches to MH992123 (UNVERIFIED: Escherichia phage OLB145, complete genome) position: , mismatch: 4, identity: 0.833

ccagcaccagcagcacgagtacca	CRISPR spacer
ccagcaccagcagcaggagtaaag	Protospacer
*************** *****  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5271730 : 5284313

Streptomyces_phage(71.43%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055641866.1\|5271730_5275213_+	DNA-directed RNA polymerase subunit beta	G8DH04	Emiliania_huxleyi_virus	4.0e-30	22.2
WP_024755375.1\|5275316_5279231_+	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	5.9e-54	27.2
WP_055641865.1\|5279303_5279567_-	hypothetical protein	A0A1J0MCA5	Streptomyces_phage	5.1e-31	80.5
WP_055641864.1\|5279553_5279787_-	hypothetical protein	A0A142K647	Streptomyces_phage	9.5e-21	79.4
WP_055641863.1\|5279830_5280754_-	N-acetylmuramoyl-L-alanine amidase	A0A2P1N078	Streptomyces_phage	4.0e-102	59.2
WP_055641862.1\|5281353_5282064_-	hypothetical protein	NA	NA	NA	NA
WP_055641861.1\|5282063_5283164_-	hypothetical protein	A0A1J0MCX4	Streptomyces_phage	1.9e-87	46.7
WP_055641860.1\|5283176_5284313_-	hypothetical protein	A0A2H5BLD9	Streptomyces_phage	2.9e-38	31.7

DBSCAN-SWA_2

8507181 : 8544932

Bacillus_phage(33.33%)

tail,plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055639605.1\|8507181_8509206_-\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_055639603.1\|8510450_8511254_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_055639601.1\|8511668_8512505_+	ketose-bisphosphate aldolase	NA	NA	NA	NA
WP_055639600.1\|8512824_8513358_+	N-acetyltransferase	NA	NA	NA	NA
WP_079037846.1\|8513382_8514492_-	peptidase M15	G1BNF7	Mycobacterium_phage	6.6e-19	26.6
WP_055639599.1\|8514893_8515850_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_055639598.1\|8515964_8516963_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_055639597.1\|8517220_8518087_+	acetylxylan esterase	NA	NA	NA	NA
WP_055639596.1\|8518140_8518638_-	hypothetical protein	NA	NA	NA	NA
WP_055645786.1\|8518634_8520137_-	HAMP domain-containing histidine kinase	Q8QKV7	Ectocarpus_siliculosus_virus	6.6e-06	24.7
WP_055639595.1\|8520202_8520898_-	response regulator transcription factor	W8CYM9	Bacillus_phage	6.1e-31	33.3
WP_055639594.1\|8521032_8521704_+	hypothetical protein	NA	NA	NA	NA
WP_055639593.1\|8521700_8522780_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_055639592.1\|8522776_8523481_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-30	39.3
WP_055639591.1\|8523477_8524671_+	ABC transporter permease	NA	NA	NA	NA
WP_055639590.1\|8524756_8526976_-	catalase/peroxidase HPI	NA	NA	NA	NA
WP_055639589.1\|8527183_8527594_+	transcriptional repressor	NA	NA	NA	NA
WP_055639588.1\|8527668_8528169_-	thiol peroxidase	NA	NA	NA	NA
WP_079037233.1\|8528463_8529687_+	hypothetical protein	NA	NA	NA	NA
WP_057950557.1\|8529869_8531981_+	hypothetical protein	NA	NA	NA	NA
WP_055639587.1\|8531991_8533161_-	hypothetical protein	NA	NA	NA	NA
WP_055639586.1\|8533165_8533735_-\|tail	phage tail protein	NA	NA	NA	NA
WP_055639585.1\|8533731_8535720_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_024759521.1\|8535731_8536130_-	hypothetical protein	A0A0E3FHN9	Synechococcus_phage	2.0e-10	38.5
WP_055639584.1\|8536143_8537961_-	type IV secretion protein Rhs	NA	NA	NA	NA
WP_055639583.1\|8537957_8538698_-	LysM domain-containing protein	NA	NA	NA	NA
WP_055639582.1\|8538699_8539137_-\|tail	phage tail protein	NA	NA	NA	NA
WP_079040849.1\|8539208_8539511_-	hypothetical protein	NA	NA	NA	NA
WP_055639581.1\|8539494_8540094_+	hypothetical protein	NA	NA	NA	NA
WP_055639580.1\|8541057_8541606_+	hypothetical protein	NA	NA	NA	NA
WP_055639579.1\|8542407_8542827_-	hypothetical protein	NA	NA	NA	NA
WP_024754772.1\|8542826_8543270_-\|tail	phage tail protein	NA	NA	NA	NA
WP_055639578.1\|8543351_8544932_-\|tail	phage tail protein	J9PVC2	Bacillus_phage	4.2e-67	34.0

DBSCAN-SWA_3

8967601 : 8997271

Bacillus_phage(100.0%)

tail,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055639297.1\|8967601_8968366_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_107105456.1\|8968478_8968745_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_079037188.1\|8968794_8969466_+	hypothetical protein	NA	NA	NA	NA
WP_055639295.1\|8971579_8972326_+	hypothetical protein	NA	NA	NA	NA
WP_055639294.1\|8972405_8973317_+	aminoglycoside phosphotransferase	NA	NA	NA	NA
WP_055639293.1\|8973317_8974010_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_055639292.1\|8974816_8975860_-	hypothetical protein	NA	NA	NA	NA
WP_055639291.1\|8975994_8976513_+	hypothetical protein	NA	NA	NA	NA
WP_055639290.1\|8976479_8976731_-	hypothetical protein	NA	NA	NA	NA
WP_079037187.1\|8977672_8978200_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_055639288.1\|8978199_8978769_+	hypothetical protein	NA	NA	NA	NA
WP_055639287.1\|8978939_8979119_-	hypothetical protein	NA	NA	NA	NA
WP_107105457.1\|8979506_8980175_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_055639284.1\|8980607_8980982_-	hypothetical protein	NA	NA	NA	NA
WP_055639283.1\|8981404_8981593_-	hypothetical protein	NA	NA	NA	NA
WP_079037826.1\|8981947_8982568_+	hypothetical protein	NA	NA	NA	NA
WP_055639282.1\|8982564_8983218_+	hypothetical protein	NA	NA	NA	NA
WP_055639281.1\|8983279_8983795_+	NUDIX hydrolase	NA	NA	NA	NA
WP_055639280.1\|8983916_8984105_-	hypothetical protein	NA	NA	NA	NA
WP_055639279.1\|8984428_8984974_-	hypothetical protein	NA	NA	NA	NA
WP_099054494.1\|8986053_8986455_+\|tail	lamin tail domain-containing protein	NA	NA	NA	NA
WP_057950582.1\|8987195_8987573_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_055639276.1\|8987753_8988428_+	hypothetical protein	NA	NA	NA	NA
WP_055639275.1\|8988587_8989487_+	hypothetical protein	NA	NA	NA	NA
WP_079037825.1\|8989507_8990188_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_055639273.1\|8990491_8990833_-	hypothetical protein	NA	NA	NA	NA
WP_055639271.1\|8991347_8991791_-	hypothetical protein	NA	NA	NA	NA
WP_055639270.1\|8992443_8993028_+	hypothetical protein	NA	NA	NA	NA
WP_055639269.1\|8993566_8993893_+	hypothetical protein	NA	NA	NA	NA
WP_055639267.1\|8994392_8994623_+	hypothetical protein	NA	NA	NA	NA
WP_055639265.1\|8995789_8996224_-	hypothetical protein	NA	NA	NA	NA
WP_055639264.1\|8996311_8997271_+\|transposase	transposase	S6AND0	Bacillus_phage	8.2e-18	30.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013129

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection