CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013187	Pseudoalteromonas phenolica strain KCTC 12086 chromosome I, complete sequence	6 crisprs	cas3,DEDDh,DinG,csa3,csx1	1	0	2	0
NZ_CP013188	Pseudoalteromonas phenolica strain KCTC 12086 chromosome II, complete sequence	1 crisprs	WYL,cas3,DinG	0	1	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013187_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013187_1

39950-40034

Orphan

Consensus_repeat	Method
TGTCATAAACCTTTCGCACGATATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013187_1

>merge|NZ_CP013187|1|39950-40034|CRISPRCasFinder
TGTCATAAACCTTTCGCACGATATTCACCTTGCGCGAAAAGAATGCAAGCGCTACGCGCTTGTCATAAACCTTTCGCACCATATT

>NZ_CP013187|1|1|39950-40034|CRISPRCasFinder
TGTCATAAACCTTTCGCACGATATT	CACCTTGCGCGAAAAGAATGCAAGCGCTACGCGCT
TGTCATAAACCTTTCGCACCATATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013187.1\|WP_058028314.1\|33147_33387_+\|DUF1488-family-protein	unknown	unknown	gnl\|CDD\|377825
NZ_CP013187.1\|WP_058028316.1\|33369_33912_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|223735
NZ_CP013187.1\|WP_058028322.1\|42894_47079_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173800
NZ_CP013187.1\|WP_058028320.1\|42114_42567_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|376525
NZ_CP013187.1\|WP_058028300.1\|26341_27439_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|223829
NZ_CP013187.1\|WP_058028328.1\|48496_48859_-\|dihydroneopterin-triphosphate-2'-epimerase	unknown	unknown	gnl\|CDD\|183053
NZ_CP013187.1\|WP_058028326.1\|48036_48474_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|224159
NZ_CP013187.1\|WP_157599061.1\|40801_42031_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013187.1\|WP_058031498.1\|30133_31741_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP013187.1\|WP_058028334.1\|50308_51196_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP013187.1\|WP_058028306.1\|28570_29140_+\|Sua5/YciO/YrdC/YwlC-family-protein	unknown	unknown	gnl\|CDD\|182603
NZ_CP013187.1\|WP_058028310.1\|31845_32304_-\|group-II-truncated-hemoglobin	unknown	unknown	gnl\|CDD\|381282
NZ_CP013187.1\|WP_058028330.1\|48869_49424_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|376498
NZ_CP013187.1\|WP_058028303.1\|28004_28571_+\|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|235971
NZ_CP013187.1\|WP_058028302.1\|27441_27915_+\|DUF494-domain-containing-protein	unknown	unknown	gnl\|CDD\|235125
NZ_CP013187.1\|WP_058028312.1\|32327_33146_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP013187.1\|WP_058028308.1\|29142_30057_+\|oxygen-dependent-coproporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|235413
NZ_CP013187.1\|WP_058028324.1\|47413_47875_-\|DUF2721-domain-containing-protein	unknown	unknown	gnl\|CDD\|378544
NZ_CP013187.1\|WP_058028332.1\|49435_50143_-\|dihydromonapterin-reductase	unknown	unknown	gnl\|CDD\|180586
NZ_CP013187.1\|WP_138562373.1\|40230_40809_+\|methylamine-utilization-protein	unknown	unknown	gnl\|CDD\|259883

Protein	Function_ID	Function_description	E-value
NZ_CP013187.1\|WP_058028314.1\|33147_33387_+\|DUF1488-family-protein	gnl\|CDD\|377825	pfam07369, DUF1488, Protein of unknown function (DUF1488). This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.	9.14975e-10
NZ_CP013187.1\|WP_058028316.1\|33369_33912_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|223735	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only].	2.06366e-76
NZ_CP013187.1\|WP_058028322.1\|42894_47079_+\|S8-family-serine-peptidase	gnl\|CDD\|173800	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	6.35088e-33
NZ_CP013187.1\|WP_058028320.1\|42114_42567_-\|cytochrome-c	gnl\|CDD\|376525	pfam01322, Cytochrom_C_2, Cytochrome C'.	2.33748e-39
NZ_CP013187.1\|WP_058028300.1\|26341_27439_+\|DNA-protecting-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	1.57153e-109
NZ_CP013187.1\|WP_058028328.1\|48496_48859_-\|dihydroneopterin-triphosphate-2'-epimerase	gnl\|CDD\|183053	PRK11245, folX, dihydroneopterin triphosphate 2'-epimerase.	7.8166e-65
NZ_CP013187.1\|WP_058028326.1\|48036_48474_+\|DedA-family-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	3.83699e-29
NZ_CP013187.1\|WP_058031498.1\|30133_31741_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.67726e-61
NZ_CP013187.1\|WP_058028334.1\|50308_51196_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	6.96463e-13
NZ_CP013187.1\|WP_058028306.1\|28570_29140_+\|Sua5/YciO/YrdC/YwlC-family-protein	gnl\|CDD\|182603	PRK10634, PRK10634, L-threonylcarbamoyladenylate synthase type 1 TsaC.	1.63651e-81
NZ_CP013187.1\|WP_058028310.1\|31845_32304_-\|group-II-truncated-hemoglobin	gnl\|CDD\|381282	cd14773, TrHb2_PhHbO-like_O, Truncated hemoglobins, group 2 (O); Pseudoalteromonas haloplanktis PhHbO like. The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. TrHbs are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). TrHb2's belonging to this group include Pseudoalteromonas haloplanktis PhHbO (encoded by the PSHAa0030 gene) which appears to be involved in oxidative and nitrosative stress resistance.	1.10747e-59
NZ_CP013187.1\|WP_058028330.1\|48869_49424_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|376498	pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I. This family includes GTP cyclohydrolase enzymes and a family of related bacterial proteins.	6.25747e-108
NZ_CP013187.1\|WP_058028303.1\|28004_28571_+\|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein	gnl\|CDD\|235971	PRK07219, PRK07219, DNA topoisomerase I; Validated.	1.09304e-31
NZ_CP013187.1\|WP_058028302.1\|27441_27915_+\|DUF494-domain-containing-protein	gnl\|CDD\|235125	PRK03430, PRK03430, hypothetical protein; Validated.	9.30708e-80
NZ_CP013187.1\|WP_058028312.1\|32327_33146_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	3.19967e-110
NZ_CP013187.1\|WP_058028308.1\|29142_30057_+\|oxygen-dependent-coproporphyrinogen-oxidase	gnl\|CDD\|235413	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase.	0
NZ_CP013187.1\|WP_058028324.1\|47413_47875_-\|DUF2721-domain-containing-protein	gnl\|CDD\|378544	pfam11026, DUF2721, Protein of unknown function (DUF2721). This family is conserved in bacteria. The function is not known.	3.68229e-27
NZ_CP013187.1\|WP_058028332.1\|49435_50143_-\|dihydromonapterin-reductase	gnl\|CDD\|180586	PRK06483, PRK06483, dihydromonapterin reductase; Provisional.	2.12676e-138
NZ_CP013187.1\|WP_138562373.1\|40230_40809_+\|methylamine-utilization-protein	gnl\|CDD\|259883	cd04221, MauL, Methylamine utilization protein MauL. MauL is one of the products from the methylamine utilization gene cluster in Methylobacterium extorquens AM1. Mutants generated by insertions in mauL were not able to grow on methylamine or any other primary amine as carbon sources. MauL belongs to the blue or type I copper protein family. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form.	5.58221e-24

>NZ_CP013187.1|WP_058028316.1|33369_33912_-|gamma-carbonic-anhydrase-family-protein
MIRSYKGIYPKLEKSVYVDESAVLVGDITLGEDSSVWPLVAARGDVNYIQIGERTNIQDGSVLHLTRKSANNPEGYPLIIGDDVTVGHKVMLHGCKLGNRILVGMGAIVMDNAIVEDDVIIGGGALVPPNKKLESGYLYVGSPVKQARPLTDSELAFLKISALNYVELKDDYLAESDSAK
>NZ_CP013187.1|WP_058028314.1|33147_33387_+|DUF1488-family-protein
MNQAILFNDDASFNATQQRIEFTAMNSGLIIRCCVAFEGEEVKALTHFAEHQFDYEMQAEALIEEESYSAEGEVLLSRV
>NZ_CP013187.1|WP_058028312.1|32327_33146_+|shikimate-dehydrogenase
MGKFAVFGNPIKHSKSPQIHRQFAEQFSTQIDYQALLAPLDEFEAFTQDFFTNQAGEGANVTLPFKERAFELVDELTERAQLAGAVNTIKKLDDGRLLGDNTDGAGLVADLIRNECKLDGASVLLIGAGGAARGCIYPLFQAGVKDITIANRTQEKAELLAEQFSAYGHVKGIGLDEITNSNYQVVINSTSSSVTGELPNISETVFTQCHLAYDMFYSNEQTSFLKWVGSINPKTKLVDGIGMLIGQAAEAYYLWQGDMPELTPVINTFAKG
>NZ_CP013187.1|WP_058028310.1|31845_32304_-|group-II-truncated-hemoglobin
MKQLIKRIFNKDASKEQESNMHETPTVEKSPYEILGGEAGVKALADRFYDVMAEEEYAKPLYDMHPQPLDRIRLVFFEFLSGWLGGPDLFVEKYGHPMLRKRHMPFSIDKDLRDQWMFCMNKALEIEVDNPLLRVGLRKSFEQLATHMINKD
>NZ_CP013187.1|WP_058031498.1|30133_31741_-|methyl-accepting-chemotaxis-protein
MTVKSIQHKIYALLAITGVLVLIASIWSSSDQQQKLAQETVAENIKLLADNYFDSINTMMLTGTMANREILSEKLRAHPSIEDAHIIRAELINKLYGPGNPNQAPTTDAERDALRGKETLVIEQRDDMRVMTFLRPMIASSDYKGTNCLGCHMAKEGDVLGVVRISYSLDDIDNTVTSNTWLSTGLLSAIFVSAFVILGILFRKLFIVRLKTLGRTMRLATQNKDLSLRIDDDIDDELGRLATNFNKMMTAFKENMAQVSHSSHVLIRSAESIYNSADTTEQAILAQKQGTDSVAAAINELESSSSEVKNTTHFASEKSDSSNHLAEESMAVAEHTEASINQLAQDVRQAAEQVSQLQNQTLEVGKVLEVISSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLATRTHDSTDEIKRTIEKLQSEAAQTVQAMSASCEEADDRALQVKKVAQALKDISNQMHEINDLNVQIADATEQQNLAAEEINHSVIGIRDNAEESLKDAHRSKQVSEELLTLARSLDEQVRSFKVD
>NZ_CP013187.1|WP_058028308.1|29142_30057_+|oxygen-dependent-coproporphyrinogen-oxidase
MSKVNLETVKAFLLQLQDTICAGLEQADGKAKFVEDAWERAEGGGGRTRVIRDGDVIEQGGVNFSHVFGASMPASATAHRPELAGRSFHACGVSLVIHPKNPHIPTSHANVRFFIAEKEGEAPIWWFGGGFDLTPFYPVLEDVKHWHQVAKDLCDPFGDTVYNDYKKWCDEYFYLKHRGETRGVGGLFFDDLNEWGFEKSFDFMQAVGNGFLDAYLPIIEKRKDTPTNDAQRQFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLARWEYDFTPEAGSLEANLYESYLKPRDWLSL
>NZ_CP013187.1|WP_058028306.1|28570_29140_+|Sua5/YciO/YrdC/YwlC-family-protein
MSHEQQTSKDTPEAVLRAGGVICYPTEAVYGLGCDPDDHSAVHRILTLKQRAEEKGLILIADNFAQLLPYVDESKIPMDKRAEIFSSWPAAITWALPAKPSTPKWLTGAHSTIAVRVSAHPVVKQLCQQFGKPLVSTSANIAGQQPEATLDKVKAVFNDQIDFYVEGALGGESKPSQIKNAFTTQLIRE
>NZ_CP013187.1|WP_058028303.1|28004_28571_+|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein
MSKIDHSLFNADKHALEKEYEICPKCGSELVMKHSKNGPFLGCANYPACDYIRSLAQHDNHDIKVLDDSPCPDCGEPLVIRNGRYGMFIGCTGYPACHFIVHEDEPEEEGLPNCPKCKKGKLVVRNNKFGKQFYSCDAYPNCKYSLNQHPVDETCPQCGWGVMVEKSRGDKAVLQCPQKSCQHKVEKS
>NZ_CP013187.1|WP_058028302.1|27441_27915_+|DUF494-domain-containing-protein
MFDILMYLFENYIHSESDIFVEQNELTDELLRAGFNQDEIYKALDWLEQLADLQHSDEIPYLNATADKAIRIYTEEECQLLDVESRGFLMFVEQVGVIDSTTREMVIDRLMALEKAEISLDDLKWVILMVLFNVPGKEQAYAQMEDLIFDEPTEYLH
>NZ_CP013187.1|WP_058028300.1|26341_27439_+|DNA-protecting-protein-DprA
MATLSQLQGLILYLTKGLGSATLSAIESKIDLVELFDLHHDELIALGINPTIAEQIATPDLKRIEQLQKFCEQQSIQIIHTEHETYPKLLKQTCHAPLILFCKGNITLLNEPQIAIVGSRNATPPGLECASEFAYQLTRSGIAVTSGMAMGIDGAAHKGALAGNGNTIAVLGTGVDVVYPKRHNYLYQQLAEQGLVISEFLPGTVANQHHFPRRNRIISGLSLGTLIVEAEIKSGSLVTAKYALEQNREVFAIPGSIRNPLAAGCHHLIKQGAKLVENVADILEDVSFLPNNGLYNIERAENAPIEDSKENCPVLKSLGFEAASVDVITHRTQWPVEKVLARLLDLELEDKVARTAEGYIKLARG
>NZ_CP013187.1|WP_138562373.1|40230_40809_+|methylamine-utilization-protein
MIKDNAGNPLGNAVVWLEGDLYKPKAEQVSEMFSMGQKDRAFTPHILVVPTGAKIEFPNFDSILHHVYSFSKPKPFELKLYKETPKSEIVFENNGVIELGCNIHDWMLGYILVVDSGFYAITDAQGIANIALSPSQIGSAQLHVWHERFEKLEDSEQVKIHLSSHTQNETYKVKQSLMEVFDFEVDESDGYE
>NZ_CP013187.1|WP_157599061.1|40801_42031_+|hypothetical-protein
MNKVIFVLLGLSFSSATTASNIQTNFDGLIEASYDSGSDSLSWLNKGWGTTRFGKDDENFLISRAAFTGRLDFANSWSFFGVAQYVSEPKATLGFTEAYLQYKPIAKGYQVSAKVGAFYPKMSLENTGFAWSSPYTYNYSALNAWLGEEIRAIGTELTIKRPARSFRSKYDVSIHTAVFKGNDPAGTLIAWRGLLPHDRQTHLNERIGFAPLYSLQKPQLSKQWQYSDPFNEIDGRFGFYAGVHLAYLKKHSLRVYWYDNNGDPAAINESIGQYAWDTNFLSIAWKSKLSSQTHLLVQAMSGSTAMGPGRGVDNDFRSWFALLSHKWTAYRFSARFEKSKVIDKDHWEFDPNASDNQALTLHINRSINDNWKLGIEWLYSDSWLSYRYKSGLPLNTTDRVWRVTLSYKL
>NZ_CP013187.1|WP_058028320.1|42114_42567_-|cytochrome-c
MKKTLILAAALFGTLSLQTNAQSMFEKPEDAIEYRKATFQLIRYQIGDMGDMLKGKIPFDAKRFQQRADSAATLSNMPWEAFTADSQKGDTGALPAIWSDRATFDKKAEQFAKYAQALAVAAQSGDKKEIGPAFRNWAKGCKDCHKSFKD
>NZ_CP013187.1|WP_058028322.1|42894_47079_+|S8-family-serine-peptidase
MSNQLIKATAVATAVSGVLFAANASAIDTKTFLENRHSMMANSIEFKAEQNEAVKAYMIVLKAESASDLLEQGRYSVAAAQQAAISIEEVQAQVLSSLSSFDPGAKVIAKTKILAATLIVDADDVALESLQNHPLVDRILPVLDNELQVADVNTYISADVVNNEKGFTGSSQSVAVLDTGVDYTHQLLGGEGTKEAYEAAANDQKTVAWPQGQVVGGYDAFRGDEDPIENDPRYDSTTGTPNATNHGTNVSHSVTGIAPDVELYAYTVCGDRTQNCSGAAQILALEKAMDPNGDGNISDRVDVINMSLGGDYGSTHTQSGTQYLIHKAVKLGTNLVISAGNDADHPFIVGGPSTTPNALSVGAMTHPVKQLVIKSGAVTGSLNDASIEAGAPVFGPLELEFSSEGKTFVYPDTNRLACEAFSEDTDFTGKVVILDRGSCGFSDKVLNAQNAGAELVIIVNAVDGQAPFNMAESPGADAITIPSFMLSKEDGQVLKDSLTSGDAFSLQVTYRVDNMAGNAVAGFSSRGPSMDGLLKPEITAPGSEIVLAKPGSVESDLSAIGKSTMKNSGTSFSGPIVAGAVALVRDARPEMNAEEVKAVLMNTADLNVLEESPVINEDTKLAPISRIGAGLVDVNKAVESPVAAWVHHADFDTNQAALSFGLLTLTETSSYTKSVKVKNFSSEAKTYSLRAEARYADDTETGAFSWDLPEEITVPAGQTISFDATLNIDPSKLKEWTFKSTTMRRMFDESAEDFTARRDAEYQQRRDALTAIEYDGAIVFNDISSSEDHALHLVFHAMPKAIEALEMKYEFIEGEKQLVVYNNGTKDLELNADNLIASDEPNHSVEMDIVSTSMNVYGGIDSCPNGGRVVTATMQLRDPVQHLRQGDYGIHFDINNDGMDDWVFYNFTDFNSSGTGVTGSMRGVSGSVNPDGSISWRYYVDIHHEVGSDTITYSACDFLVGFGDQTIDVDGTPTVVSPVGQNIRVTATVGPDNGYSLGGPLLTTDTLEGTVTYQSSRVSMEDMEGEDVSKIVAGGKVTIQSDSPFVLSRTDLQKSVAVVDQAVLDEQSREILPMVESMSFDISEDVENGTVIGQLSLVEQEGALELSEYFVRSQSNEGVNITEDGEIVVANAALLDYDQGVTEVELKVVAIDVAGNVSEEASIYINIQNVVDTVTEKTPMIAAEQAFEVKENVAIGTIVGQLSVMDQDGNLESFEVTGSEAFAIDAEGTITVKGEFDLGEGTEVMLEVVAVDAEGNKSESASVKITIIENVATIAAGQQFTVQENARVGYQVGQLQFTDRDNGVIGFEVSGTTLLEVNAQGNILTTSALDYEYDRKITFTVTAVDAHGNRSDAETVEVRVNKVEPVDVSDDSGSLAWLALLAAPFAALRRRKQK
>NZ_CP013187.1|WP_058028324.1|47413_47875_-|DUF2721-domain-containing-protein
MSQDPVHIITIAKVIQTAVAPVFLITGIAATLGVLSNRLARITDRARLLDRKLNNSQDDSLASSLTQEMRALLKRSRCIHIAFSMSVLSALLVCAVVMMMFISHLYTMPLSVTISSCFIGAMILLIGAFLALLAEVFLATRSMRRGMIFKDIQ
>NZ_CP013187.1|WP_058028326.1|48036_48474_+|DedA-family-protein
MWIYLSLFASSFLSATLLPGSSEVVLSGLVVKQQGLLWLLWLSATVGNVLGSCINYWLGLKMMAFQDRHWFPINAEQIAKGQQVFDKYGVYSLLFAWLPVVGDPLTLLGGVFKVRLSLFVLLVSIGKALRYGFIIAVALGIERLI
>NZ_CP013187.1|WP_058028328.1|48496_48859_-|dihydroneopterin-triphosphate-2'-epimerase
MQNAIINITNLRLRTYIGFNQEEREKKQDVVLNIEIHYPADSACINGDIVEHALNYKTITKAVIKQVETGHFLLLEKLVADILEICHEHESVTYAKVRVDKPHALRFADSVSLTLDWRKS
>NZ_CP013187.1|WP_058028330.1|48869_49424_-|GTP-cyclohydrolase-I-FolE
MHDDLKKSYHEILTAVGENPEREGLLDTPKRAAKAMEFLTKGYRETLDEITNNAVFSSDADDMVLIQDIELYSMCEHHLLPFVGKCHIAYIPNGKVLGLSKFARIVDMFARRFQIQEQLTHQIAKAVEEVTGAKGVGVIVEAKHMCMMMRGVEKQNSKMRTSVMLGNFRHDPKTRNEFLQLVKN
>NZ_CP013187.1|WP_058028332.1|49435_50143_-|dihydromonapterin-reductase
MTAPILITGGAQRIGLALTEHFVAQAQPVIMTYRTRHACIDELEAQGVTCIQCDFDKPDSVSELVNRVTPITPSLRAVIHNASSWDCEASCDDYANLFDRMMHIHAKVPYLLNMALSPLLQSSEDITDIIHLTDYVVETGSPKHIAYAASKAALDNLTKSFSAKFAPSIKVNSIAPSLIIFNEHDDDAYKAKTLKKSLMGIEPGCREIINSVELLLSSNYITGRTLAVDGGRHLK
>NZ_CP013187.1|WP_058028334.1|50308_51196_+|sulfite-exporter-TauE/SafE-family-protein
MLARVTQKSVWPFWFIAGVYASLLLLQGLKPALMQIYQEFEIALTMALGSFVAGGTALGGGAVAFPIMTKVLDIEPATAKVFSLAIQSFGMTAASLTIICRDIPYYRNVVLLALPMASLGVMLSLLYVAPVVPRLWVKSVFSVLLLCFAVTMLVRWWRKAHHEHSIDDIHPHPQRLMLVAFIGGVASGLVGSGADIALFALLLLCYKADVKKATATSVLVMAFTSVIGSLINVVYLQQITPEIHSYLLAAIPVVVIGAPLGAYVCAKVKVGYVVMFLLSLIVLEAGMTGYELVSS

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Crispr_ID: NZ_CP013187_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013187_2

351498-351650

Orphan

Consensus_repeat	Method
GTGACTTCATCACGAAATTAGTTCACCTTGCGCAAAGGAAATGAAGTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013187_2

>merge|NZ_CP013187|2|351498-351650|CRISPRCasFinder
GTGACTTCATCACGAAATTAGTTCACCTTGCGCAAAGGAAATGAAGTGCTTCGCACTTGCCATTAACCCTTTGCACGTAAATTCGCAATCGGAGGTGATTAGCGTGACTTCATCACGAAATCAGTTCACCTTGCGCAAAGGAAATGAAGTGCT

>NZ_CP013187|2|2|351498-351650|CRISPRCasFinder
GTGACTTCATCACGAAATTAGTTCACCTTGCGCAAAGGAAATGAAGTGCT	TCGCACTTGCCATTAACCCTTTGCACGTAAATTCGCAATCGGAGGTGATTAGC
GTGACTTCATCACGAAATCAGTTCACCTTGCGCAAAGGAAATGAAGTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013187.1\|WP_058028620.1\|350884_351310_+\|ClpXP-protease-specificity-enhancing-factor	unknown	unknown	gnl\|CDD\|236987
NZ_CP013187.1\|WP_058028617.1\|348125_349424_+\|cytochrome-bc-complex-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|224209
NZ_CP013187.1\|WP_058028621.1\|351675_352242_-\|divisome-associated-lipoprotein-YraP	unknown	unknown	gnl\|CDD\|182907
NZ_CP013187.1\|WP_058028613.1\|344875_345964_+\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NZ_CP013187.1\|WP_058028630.1\|369528_370584_-\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|368695
NZ_CP013187.1\|WP_058028618.1\|349420_350158_+\|cytochrome-c1	unknown	unknown	gnl\|CDD\|225413
NZ_CP013187.1\|WP_058028615.1\|346649_347039_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP013187.1\|WP_058028622.1\|352241_352829_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|182811
NZ_CP013187.1\|WP_058028627.1\|357487_360808_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274362
NZ_CP013187.1\|WP_058028619.1\|350258_350885_+\|stringent-starvation-protein-A	unknown	unknown	gnl\|CDD\|236537
NZ_CP013187.1\|WP_058028625.1\|355175_356036_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP013187.1\|WP_058028629.1\|368498_369524_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320691
NZ_CP013187.1\|WP_058028614.1\|346209_346638_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP013187.1\|WP_058028612.1\|344261_344720_-\|YhcB-family-protein	unknown	unknown	gnl\|CDD\|377646
NZ_CP013187.1\|WP_058028626.1\|356491_357487_-\|two-component-system-response-regulator	unknown	unknown	gnl\|CDD\|225971
NZ_CP013187.1\|WP_058028616.1\|347538_348126_+\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|273610
NZ_CP013187.1\|WP_058028623.1\|352831_353197_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NZ_CP013187.1\|WP_058028628.1\|361186_368353_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379155
NZ_CP013187.1\|WP_058028611.1\|342748_344101_-\|Do-family-serine-endopeptidase	unknown	unknown	gnl\|CDD\|273938
NZ_CP013187.1\|WP_058028624.1\|353224_355111_-\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|380562

Protein	Function_ID	Function_description	E-value
NZ_CP013187.1\|WP_058028620.1\|350884_351310_+\|ClpXP-protease-specificity-enhancing-factor	gnl\|CDD\|236987	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional.	1.24161e-76
NZ_CP013187.1\|WP_058028617.1\|348125_349424_+\|cytochrome-bc-complex-cytochrome-b-subunit	gnl\|CDD\|224209	COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy production and conversion].	1.07137e-130
NZ_CP013187.1\|WP_058028621.1\|351675_352242_-\|divisome-associated-lipoprotein-YraP	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	4.99002e-60
NZ_CP013187.1\|WP_058028613.1\|344875_345964_+\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	8.17915e-173
NZ_CP013187.1\|WP_058028630.1\|369528_370584_-\|DUF898-domain-containing-protein	gnl\|CDD\|368695	pfam05987, DUF898, Bacterial protein of unknown function (DUF898). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative membrane proteins.	8.64253e-106
NZ_CP013187.1\|WP_058028618.1\|349420_350158_+\|cytochrome-c1	gnl\|CDD\|225413	COG2857, CYT1, Cytochrome c1 [Energy production and conversion].	9.49825e-72
NZ_CP013187.1\|WP_058028615.1\|346649_347039_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	9.78035e-82
NZ_CP013187.1\|WP_058028622.1\|352241_352829_-\|SIS-domain-containing-protein	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	4.52627e-73
NZ_CP013187.1\|WP_058028627.1\|357487_360808_-\|PAS-domain-S-box-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	4.55633e-95
NZ_CP013187.1\|WP_058028619.1\|350258_350885_+\|stringent-starvation-protein-A	gnl\|CDD\|236537	PRK09481, sspA, stringent starvation protein A; Provisional.	1.16695e-147
NZ_CP013187.1\|WP_058028625.1\|355175_356036_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	4.52152e-126
NZ_CP013187.1\|WP_058028629.1\|368498_369524_-\|M48-family-metallopeptidase	gnl\|CDD\|320691	cd07332, M48C_Oma1_like, Peptidase M48C Ste24p, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	2.32326e-77
NZ_CP013187.1\|WP_058028614.1\|346209_346638_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	8.75632e-103
NZ_CP013187.1\|WP_058028612.1\|344261_344720_-\|YhcB-family-protein	gnl\|CDD\|377646	pfam06295, DUF1043, Protein of unknown function (DUF1043). This family consists of several hypothetical bacterial proteins of unknown function.	4.07666e-23
NZ_CP013187.1\|WP_058028626.1\|356491_357487_-\|two-component-system-response-regulator	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	1.11615e-123
NZ_CP013187.1\|WP_058028616.1\|347538_348126_+\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	gnl\|CDD\|273610	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit. This model represents the Proteobacterial and mitochondrial type of the Rieske [2Fe-2S] iron-sulfur as found in ubiquinol-cytochrome c reductase. The model excludes the Rieske iron-sulfur protein as found in the cytochrome b6-f complex of the Cyanobacteria and chloroplasts. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. [Energy metabolism, Electron transport].	1.28901e-89
NZ_CP013187.1\|WP_058028623.1\|352831_353197_-\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	1.42299e-45
NZ_CP013187.1\|WP_058028628.1\|361186_368353_+\|hypothetical-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	1.45535e-21
NZ_CP013187.1\|WP_058028611.1\|342748_344101_-\|Do-family-serine-endopeptidase	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	9.94583e-177
NZ_CP013187.1\|WP_058028624.1\|353224_355111_-\|penicillin-binding-protein-activator	gnl\|CDD\|380562	cd06339, PBP1_YraM_LppC_lipoprotein-like, periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).	8.01765e-83

>NZ_CP013187.1|WP_058028620.1|350884_351310_+|ClpXP-protease-specificity-enhancing-factor
MTPNRPYLLRAFYDWIVDNECTPHLVVNAEFPAVQVPVQFVQDGQIVLNISPSAVTHFDMDNQQLSFNARFSGQPMQVYVPMGAVLAIYARENGEGTVFTQETFPEYEEEPQGELEEVVEATEEKPKEPEKKKGAHLRVVK
>NZ_CP013187.1|WP_058028619.1|350258_350885_+|stringent-starvation-protein-A
MAVAANKRPVMTLFSGANCMYSHQVRIVLAEKGVSVDIHLAEKDNLPEALHEINPYGTVPTLIDRELGLYEANIIMEYLDERFPHPPLMPVYPVMRGRSRLMMHRIETDWYTLAAKIKQGGSDADQARKELTEALLAIAPIFTEAPYFMSEEFSLVDCYLAPLLWRLPEMGIDLNGAGAKELKEYMLRLFERDSFQASLTEAEREIRA
>NZ_CP013187.1|WP_058028618.1|349420_350158_+|cytochrome-c1
MMKKLIIGLFALLPTFAMAAGPSVPLLESNHDLTDNASLQRGAKLFMNYCLGCHQMQYQRYERTFRDIGIPVEIGQETLIFDGSKVGSHINNAIKIEDAATWFGAPPPDLTLVARVRGADWIYTYLKSFYVDESRPFGVNNSVFPSVGMPHVLQELQGVPTARFEEVEEHGVKVQKVVEITTDGSGEMSADEYDQAVRDLTNFMAYVGEPTRLKSEALGYKVLGFLVILFILAFFLKKEYWRDVH
>NZ_CP013187.1|WP_058028617.1|348125_349424_+|cytochrome-bc-complex-cytochrome-b-subunit
MAGKQDNASTGVVGNVINWIDDRIPMTRVWNMHIAQYPAPKNFNFWYLFGSLAILVLVNQILTGIWLTMSYVPSAEGAFASIEYIMRDVEYGWLLRYMHSTGASAFFVVVYLHMFRGMIYGSYQKPRELLWLFGMLIFLALMAEAFMGYLLPWGQMSFWGAQVIISLFGAIPVIGDDLTQWIRGDYVISGATLNRFFALHVIALPLVLVILVFLHIVALHEVGSNNPDGVEIKRKKGSVAEEDKPKFQFHEYYTNKKDIVDAIPFHPYYTVKDVLGVAGFLIFFCWVVFFAPEMGGFFLEAPNFEAANPLKTPEHIFPVWYFTPFYAILRAIPDKLMGVIAMGASIVLLALLPWLDRGKVRSIRYRSKWHKLNIAQFVVTFIILGWAGATPQTDLSTVLSRITTVTYFMFFVLLFVYSKNEQTKPLPERLTK
>NZ_CP013187.1|WP_058028616.1|347538_348126_+|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit
MSNAPVDNSRRRFLTIATSVVGGVGAAGAAVPFIASWNPSERAKSAGAPVEVDISKLEPGQLIRVEWRGKPVWVINRTPKMLEQMKAHEGQLRDPQSEEPQQLDSAKNEYRSKRPEIFVAVGICTHLGCSPSFLNGGFGEYVEGTESGFFCPCHGSKFDMAGRVFQAVPAPLNLEIPPYTFIDDTTILVGEEEVA
>NZ_CP013187.1|WP_058028615.1|346649_347039_+|30S-ribosomal-protein-S9
MANQYYGTGRRKSSSARVFLRPGTGNIVINQRSIEEYFGRETSRMVVRQPLELVEMTEKFDLYITVAGGGSTGQAGAIRHGITRALMEFDESLRPTLRKAGFVTRDARKVERKKVGLKKARKNTQFSKR
>NZ_CP013187.1|WP_058028614.1|346209_346638_+|50S-ribosomal-protein-L13
MKTFVAKPESVKRDWYVVDAEGKTLGRIATEIARRLRGKHKAEYTPHVDTGDYIIVINAEKVTVTGNKTTDKVYYAHSGFPGGLKSITFDKLQAKKPEMIIEKAVKGMLPKGPLGREMYRKLKVYAGSEHAHAAQQPQVLDI
>NZ_CP013187.1|WP_058028613.1|344875_345964_+|cell-division-protein-ZapE
MTPWEKYQQDLQRDDFQYDAAQENAVKHLQRLYDDIVNQPEQPQGFFSRLFNRQPKQKITGLYFWGGVGRGKTYLVDTFYEALPTDRKMRVHFHRFMHRVHDELKKLKEVKDPLETVADIFKKETDIICFDEFFVQDITDAMLLGGLMQALFARDIILVATSNIVPDELYRNGLQRARFLPAIALVKENTEVVNVDSGIDYRLRTLEQAEIFHSPLDAQADKNLFEYFDKLSPEPGKLDEAIEIEGRLIKTRKVADSIVMFDFAQICETARSQVDYMEISRIYNTVILSNVKQMGQQNDDAARRFIALVDEFYERNVTLIISAAAPITELYTDGTLNFEFRRCISRLQEMQSHEYLAREHLA
>NZ_CP013187.1|WP_058028612.1|344261_344720_-|YhcB-family-protein
MTTFAWLGLIVVVAIAAFFLGSMFTKKQLKHDDLEQQVQSAKHELEQYRQEVADHLASTKKLMTKMQDSYSQLLTHVEETDKALLTVKPSVPEDPFFSKETTEQLQASLQSRPERRREAKNDSLSAQPSDYAEGETGIFSGDSSEIEQPKAS
>NZ_CP013187.1|WP_058028611.1|342748_344101_-|Do-family-serine-endopeptidase
MKLKLSLLSAAIFSTALFLSPTAVEAKLPIAVDGQSLPTLAPMLERVTPGVVSIRVSGAKEVRRRVDPFDYFFGNPQPRNQKRPFSGLGSGVIIDANEGYVVTNSHVIDEADKIIVTLKDGREFDAKLVGRDKESDIALLEIDADNLTEVKLANSDKLRVGDFSVAIGNPFGLSHTVTSGIVSALGRSGLNIEGYEDFIQTDAAINQGNSGGALVNLNGELIGINTAILGASGGNVGIGFAIPSNMMKNLVDQIIEFGQVRRGSLGIIGRTLDAGLAKAQDLEVQQGAFVMQVVKDSAASEAGIKANDVIVSLNGDDIQSFEELRGKIATIGEGRTIELGVFRDGRKRTIEVTLKGQGELQAQADKVHPMLRGAVLESGERNGNQGVIVSSIEERSPAARVGLEEGDVIMQVNRQRVKNIRDMSNLIEDIQGNIVLGIKRGRDSVFILIQ
>NZ_CP013187.1|WP_058028621.1|351675_352242_-|divisome-associated-lipoprotein-YraP
MPFKHLAIIAILTLLQGCAAAVVAGTAGAVSAANDRRTIGSQIDDNNIEIKATLALKRVPNLSEQANISVVSVNGTILLVGQVPSNNLMSQAAQAVRNAVTVKNIHNQLRIGTRIGIATQTHDTWLTSKVKTKLLTAETITGNNIKVVTENSEVFLMGLVSEAEADMAVEIARHVNGVKRVIKAFEYL
>NZ_CP013187.1|WP_058028622.1|352241_352829_-|SIS-domain-containing-protein
MQESIKTIFTESIQAQIAAGEVLPEVLEAAAMTIVQGLINGNKVICCGESSCNILAEHFAGLLVNHYETERPCLPAIALSQNHVHLDMHNTEHDSDKFSRQVRAFAQQGDLLVVFAIDGNEKNIISAVEAALTKDMTVIALVGDEGGELIGLLGPNDVEILTPSKRPSRIIESHLFNVHCLSQLIDNTLFPQDDQ
>NZ_CP013187.1|WP_058028623.1|352831_353197_-|YraN-family-protein
MLKGLFANTRAKGMHYEQLAEQYLQAQGLSAVSRNYNCKYGEIDLIMKEQDTLVFVEVKYRKSNNFGGAISALSPSKLQKLQRSIYHYLECKKLKNLPIRIDFVAIEGLSSDNIKWIKNIS
>NZ_CP013187.1|WP_058028624.1|353224_355111_-|penicillin-binding-protein-activator
MRLKVICLVIGVLSGLSACSTTEKSPADPRVVQNQPQTKVPEVLNAEGLLNKARTKQGASRIQLLYSARENAIKEQNWPILEQACLALERNETVDYVQNKLYIALARTELNNYSTALNILKALNERLSLPEHKAWHQYLMGRIYASQGMPKKALTYYFKAADLSFTDNLKVANLNDEIWQALQQLSSYALERFDRGTVIQRGWVKLAKYQQIYIGSGIQLHQALNNWQRRFVNHPATYILPKKVQNAVNLAPYQAKRIAVLLPQSGSSKRLGSALKNGFLAAMDHSEINDITFIDEQLSAEDIERQLATQQFDFIIGPLLKDNIEKVSNSSAIQSTPTLHLNIAETPNLNAEQYFFALNPEHEVEQAMVHFLSQAFQKPMLLAPDTLSGLRLVNHFKNEWQNYSLIEPEIGLYTDSKDMAKVVANLLEVDASKERIKTVKSLFRKEVESETRSRMDIDVIYILGDAIETRLLKPYLDVNVSTFAKRIPLYASSRSYSKRMDHTDKGDLEGLFFTEQPWMLNKSVDKFNLRAQYDALWPEQADIEQRLFAMAFDAVHLIPELKQLAKIPGKAYSGLTGKLSIKNNNTVERRLEWAQYKQKQIQLVQLEEQKPTPLFMQNHNRFQESLKD
>NZ_CP013187.1|WP_058028625.1|355175_356036_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MTKAQNTDKIGTLYVVATPIGNLADISERALTTLAEVDLIAAEDTRHTGKLLSHFNIKAKTFALHDHNEKQKAQQILDWLNEGLNIALVSDAGTPLISDPGYAVVNLCRNEGADVTPVPGACAAITALCCSGLPTDRFQFIGFTPAKSQARQQFFVDAFESGITSIMYESTHRIMASLEDMQTALGAEQHVVFAKELTKTYETFFSGSVGELIEYLNNEPEKQRGELVLMLPGKAKQQDEIPADARKMLSLLEPEMPLKKACGVVAEYFGLKKNALYKAVIADKDD
>NZ_CP013187.1|WP_058028626.1|356491_357487_-|two-component-system-response-regulator
MMAMQDTRPLILVVDDEPANLRVLKQILQDNYRLAFAKSGEEALKLTASKQPNLVLLDIMMPDMTGLEVCKTLKASALTSAIPVIFVTALNHETDETQGFELGAVDYITKPVSSAVVKARVATHLSLVRAEELKATRLQIIQRLGRAAEYKDNETGMHVMRMSHYAKVIALAYGFDEARADLLLHTAPMHDIGKIGIPDHILLKPGRLTPEEYEVMKGHPQIGADILGEDESELISLAKIVALTHHEKWDGSGYPNGLKGDDIPIEGRIVAISDVFDALTSKRPYKEAWSIEKTLAFLDEQSGLHFDPKLVQIFRQQLDKILEIKEKYQEE
>NZ_CP013187.1|WP_058028627.1|357487_360808_-|PAS-domain-S-box-protein
MPTSSLLDLFVIPSESILIYGHYHGWLVILSIFIAIFASFMGLQVASQVTPETKPARRHSMLLIGSFALGGGIWSMHFIGMLAFDLCTNVEYNGQLTFISMLPGIFASWVALNFLTQNRKGFIPLLIGGVLVGAGIGAMHYTGMAAMEMAPLLRYDTFFFILSIVVAVTLAMLSLWIHFGLTSLNKPYFKRPFPELLASAIMGCAITGMHYTGMAAARFVRPPGLELSEQTSEISMYLALGISVTTAIIICLVLGLNLILKYKDISIVASENEHRLRAMMATAVDGIISIDSNGIILNINQATEKLLGWQSNELIGKNVNILVPAPFHGEHDGYLKRYLETGEANIIGKGREVSAVHKDGSLVAIRLAIGHVNLNSGDIFVAFISDIRPRLKMEQALRENEEKFRSLITNIPGIAYRCKDTPEWPMIYISDAVENLTGYAPEDFLLPDPTISFSQLYHPEDKEKIIDKFNFNGPFKLEYRIIDRAGQERWMMEQGTHIKDLERNETWIDGFIMDITERKEMEQALRQAKDRAEQAATARANFMANMSHEIRTPMNAIIGFSDILIENNTQLEQQHHLKTINNSAKSLLHLLNDILDSAKLDKGKLELEKRNFSLYQEVDEVISTLWLQARNKNLQLSVEVSPKLRDAYYGSPERIRQVLTNLLSNAIKFTEHGTVKVSVEPQENNIINFVIEDTGIGMTQAQLQRVFDAFTQADASMSRRFGGTGLGTTISKQLVELMGGTITAQSTKGVGSQFSFTLPLKPVSTPEIEQKQENIALPKLTILVVDDIQQNIELLTLLLEREGHRVITARDGQQALIRMASEDNLDLVIMDIQMPVKDGLTASRERREYELNKRLKRLPIIAFTASVLKDDKLAAKQAGMDGFAKKPVDLHALFSEIARVLDITTVEEPLSVQDNTQGKLIDERKGIALWGSKEDFYNQINLFITQYESNLANLATLFEQQQWPTLQAELHKLKGICGNLSLTKLMRQLEKLETVATTEQQQAKATLHDIAESIDQLKSEVTTQIQQKAIADVNNKSDNLCGLTEALKALKSTLEQNEIDETILDQLTQYQMPQFASEVEAITSAVNDFEFSQAVMLTEQLIKKVS
>NZ_CP013187.1|WP_058028628.1|361186_368353_+|hypothetical-protein
MTRNKLYLALLTLGASFSSIAQSSLAPLTIHVDENTKTNTTIGSVSFLDGVSDKTVRLEVGTTDIKNWITNGEAFEPISFNSTFTQAPIVFGQIQSNSDYQVEYEVSTYSYSGVTSKNNNRLLMRHRLDNVTALGFEAVLESELDKKGTSVIQSFLDTGEGETLGWIAFAEPISAFWNDKPIDVSSTGTSVTHNTHGHAFSVPMTDTPNILTSLSTYNGTSQSGVAVDELSANKVKVHIDNLDDASHAAENVNVFALQGTGLLFTETMAIVGETGVITVDDTDIENPFSITFSKSYNNPVVFVQAVGKDKQIFDAAVRLNFVAPMMLEGYLHSNNENLVPNRFGEFELHYQIFEAGRWDIPLEHYTYSIVSGNDAGVFSVDQIKGEIKVADQTQLDFELGNNQYSLTVRATDGAGNHYDTPVTINVTDINDSLNNNAQSIDGLAADDWAGWSVAPAGDVNGDGFDDIIVGSPQADVYRNDGTFMYEDNGAAYVLFSDATGTFPSLTEVIGGTRGFGIMGAESGDNAGFAVAGGVDINGDGLSDVVVGAPYAGTNGDNSGSVYVVFGKAGTNYVPLSDMNAGGSDYGFAIHGAYTEDYAGGTLVVGDVNGDGLGDIVIGETVTRFLAGTGSFALRDLLEDGTADPNLAYVVYGKKDNNVVQLANVATDYNEQGFAITRPSRKLFSDWYYGAQVLPTGDFNSDGLTDFIVSHGLFVDTSGTSYVVHGRIGGEAVKYNSIKSAGNGIKITPQGSGNYGFDFGDATLDALPSFTTSHVGDVNADGVDDIALLLTDTGCCSGIDHPRAYILFGGVDVADEINLADIANGNGGFVIHNDASNIDHSDLQVILGSIGGAGDLNGDGFDDIIIGDPFAEDNKGRVYAVYGRAGTEPVYLSEIIETQQGFYSEGNGGEQLGQFIASAGDVNGDGIKDIQFGTPSANKNNLNNTGAVYVLNGDGKLVTLWGTDGNDTITGTASADNIATGTGDDVIRTNGGTDAVYAGPGEDTIYISDNTFTRIDAGGNTDTLVFDGSGINLDLATQASRVRNVEVFDIRGSGANSITLNKSVSSNSNLRILGDNDDYVGAANNQWIDAETTQVIDNVTYKVFTSGSATMLVQDGLTVTVNNAPTIEDQTFTVSEIAASGTGIGILAADANDVGDFVTFQILSGNEDGDLVLDAQTGVLSISPAISRLDFEKTATYTLQVIVYDQYNTTDTAQITVDVLDMDSMEITLEGDVSGEGSYWGENTVLELLGMSSPQWASTETKHTWNVPEENLPDDPAIIRIESHGKIHYVGGMDLFGGWVEADIPLSMDLRFPDEIAAGQPVNLATKFTVGENANFIASSPGVQISAELIFEDYLIKYESALFEKLNGQTKIDYASYEKTVGSESFGVYGDNCANALNRSKCYKLDDGVEVYDLTRELTDEKLTSLIENNFYELSVVTAEDHARGVSDNITHGTSFVNGVDIIDVVYAHKGAVDGIEIISTDVSDPTATTISFIPANMTVEQISSVVKNLTRDSLAELPSNARKAIEKAIGLEVDKLRFLAGHDLTDWVSEEIYWGSNWTKWHAQAGMESMEGTSEQCIDNYFAPAGEDLYRRYKFSTLDTFVSAALDLHQDFELNIESTAILVLEDGTEVYFDPEEDITFTPELTHDVNNDGMIDATLTVNAASKFVNNTKMNAFFRMPFKLLEFEYNVQEAVCTADNIYTMGNQGLMFEKGSYGPLLDSEKEIQYDTTDFGGPTEITIAQNSFTTQLSFDLCSNSAACGEPVLSYGNNAPVASEVILTGDFIGKSTVSASYTYTDHESDFEESSRYQWYRSATGSNDDAQVIDGEFYQSYTLSLEDIDSFVAFCVTPHDGTDFGNPECSEWTSVESPYHQDLSIMNGFGQSIVINGTDQSMIQTMDSGFNPNSSYTIEAWVKVNSLNPEENSNLFTFSEDANSSKAAVRIFSDGRLRVKATNTTYKSTKTITVGQWQHYAVSYDQPTQQLSVYLDGELIISEVDAAKDSNVYFVWGSGNDGISKKLDANIDEVRIWDYAKSQESIAANRYLGASLSNSNLVSYYHFDSMVNGEVEDLTGESTMELVNAPVLEKHNVYLTLDGNGDYVDFGDPVDGSLDFGGDNFTAQAWIYLEPGSGNQTRIILNKKIGGANGYKGWTWSVNTRNRLTWNHDAYNNGKKGYEATGQKLNTGRWYHAAVVVDWENAAKVTMYLDGKNVGSSGLGTKRNLNNHVPLRIGAYSSTDTTTNTFKGHIDDVAIWTRALSEDEINACKEEMELGCQQDLLLYHDFEQDVRKNKAIDRYNGTIFGAVEVDNSLDVKFTTTEYAAFAGKLPGGTGVTFGLADAPAFGDVAISEYSGEFIYTPNGSANGASDSFSYYIYTSDNGQSQKQIVTIEFE
>NZ_CP013187.1|WP_058028629.1|368498_369524_-|M48-family-metallopeptidase
MKILGTLYPTGSSKAVTCSAAVFDTKLMLTYESGKQDSYDFADAVLGEPILGQSQEITFSDGSRFLPEDVKFRWPTKRKRLKVVEKLEQNLLSVLGAIVLSPILVYGILFKAVPEFAVQTYDLVPDSVVKTMGEQSMYAIEKTALEPTTLSVQEQQTVIQLWDDSLQKLSLPADQFKLSFYQSDFFGANAFALPHGQIVVTDDLVKSMQDHPLALQAVLLHEIGHVEKQHSIRMAAQAAAGAIAFAMIFGDLEGFAEVLLGTGSTILQQRFSQDMEKEADDFALHHMKQHGIDPKEFAKALEIIVEQAGIELENDEEGAWSKYLSTHPSIKSRIENANNFK
>NZ_CP013187.1|WP_058028630.1|369528_370584_-|DUF898-domain-containing-protein
MEEINNLSAQSEQQTHQVLFTGNAKDYFGIWIVNILLSIVTLGIYSAWATVRTKQYFYGHTSIDGHRFNYLATPIQILKGRIIAFAIFALYVTLSTYSPVMAVVFFLMWAAAIPWLINQSLRFNLRMTSHRNVRFGFKGNYFDALTHFVLLPIVGALTLYIAMPWVLKKIDTYIHNNIEYGNKALKVELSAGRYYGAVLRCLVVAIGFGVISAIIAGIMGGFGDPDSLGVAMVFISLGFNFLAISLLTGIYQSKVRNHIFANAQLDDVATFESKLGSVEYSILLATNALAIIFSLGLAFPWTKVRKAKMLAAATTVTLSENAEHVMEVYRESQSSLAEEAANVFDVDISLT

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Crispr_ID: NZ_CP013187_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013187_3

717281-717392

Orphan

Consensus_repeat	Method
TGGTTTGTACGCGCGGGTTTATCCCGCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013187_3

>merge|NZ_CP013187|3|717281-717392|CRISPRCasFinder
TGGTTTGTACGCGCGGGTTTATCCCGCGCAGAAGCGAGAAGCGTGACATAAAGTCTGCGTCTACCAAGAGAGATTAGAGGTGTGGTTTGTACGCGCGGGTTTACCCCGCGCA

>NZ_CP013187|3|3|717281-717392|CRISPRCasFinder
TGGTTTGTACGCGCGGGTTTATCCCGCGCA	GAAGCGAGAAGCGTGACATAAAGTCTGCGTCTACCAAGAGAGATTAGAGGTG
TGGTTTGTACGCGCGGGTTTACCCCGCGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013187.1\|WP_058028897.1\|715226_716090_+\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|378264
NZ_CP013187.1\|WP_058028900.1\|718638_719634_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
NZ_CP013187.1\|WP_058028895.1\|711921_714264_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372375
NZ_CP013187.1\|WP_058028904.1\|724034_724580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013187.1\|WP_058028896.1\|714276_715227_+\|DUF692-domain-containing-protein	unknown	unknown	gnl\|CDD\|377459
NZ_CP013187.1\|WP_058028898.1\|716255_717101_-\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|238113
NZ_CP013187.1\|WP_169792712.1\|702796_704278_+\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|335768
NZ_CP013187.1\|WP_058028890.1\|704475_704982_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379324
NZ_CP013187.1\|WP_058028891.1\|705098_705575_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013187.1\|WP_058028906.1\|725220_726111_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP013187.1\|WP_058028899.1\|717773_718211_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP013187.1\|WP_128724250.1\|720718_721501_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013187.1\|WP_058028907.1\|726208_727321_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|168661
NZ_CP013187.1\|WP_058028892.1\|705763_706393_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP013187.1\|WP_058028893.1\|706942_710233_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|143478
NZ_CP013187.1\|WP_058028905.1\|724671_724950_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|185338
NZ_CP013187.1\|WP_058028894.1\|710506_711427_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013187.1\|WP_058028908.1\|727966_728737_+\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|372574
NZ_CP013187.1\|WP_083496499.1\|722104_723577_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP013187.1\|WP_058028901.1\|720060_720375_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013187.1\|WP_058028897.1\|715226_716090_+\|DUF2063-domain-containing-protein	gnl\|CDD\|378264	pfam09836, DUF2063, Putative DNA-binding domain. This family represents the N-terminal part of a Neisseria protein, UniProtKB:Q5F5I0, Structure 3dee. It runs from residues 31-117 as a helical bundle with 4 main helices. \From genomic context and the fold of the C-terminal part, it is suggested that this protein is involved in transcriptional regulation.	1.53912e-11
NZ_CP013187.1\|WP_058028906.1\|725220_726111_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.71927e-40
NZ_CP013187.1\|WP_083496499.1\|722104_723577_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	9.85502e-57
NZ_CP013187.1\|WP_058028908.1\|727966_728737_+\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	1.78918e-06
NZ_CP013187.1\|WP_058028896.1\|714276_715227_+\|DUF692-domain-containing-protein	gnl\|CDD\|377459	pfam05114, DUF692, Protein of unknown function (DUF692). This family consists of several uncharacterized bacterial proteins.	8.13335e-144
NZ_CP013187.1\|WP_058028898.1\|716255_717101_-\|trypsin-like-serine-protease	gnl\|CDD\|238113	cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.	8.87613e-17
NZ_CP013187.1\|WP_169792712.1\|702796_704278_+\|LytTR-family-transcriptional-regulator	gnl\|CDD\|335768	pfam04397, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	2.91359e-18
NZ_CP013187.1\|WP_058028895.1\|711921_714264_+\|hypothetical-protein	gnl\|CDD\|372375	pfam12902, Ferritin-like, Ferritin-like. This is a family of bacterial ferritin-like substances that also includes a C-terminal domain of VioB, polyketide synthase enzymes, that make up one of the key components of the violacein biosynthesis pathway. Violacein is a purple-coloured, broad-spectrum antibacterial pigment.	2.99669e-06
NZ_CP013187.1\|WP_058028899.1\|717773_718211_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	1.65506e-33
NZ_CP013187.1\|WP_058028900.1\|718638_719634_+\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	1.51084e-11
NZ_CP013187.1\|WP_058028892.1\|705763_706393_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	4.39344e-125
NZ_CP013187.1\|WP_058028893.1\|706942_710233_+\|S41-family-peptidase	gnl\|CDD\|143478	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active site tetrad residues are distributed between the C1 and C2 domains, with serine and histidine on C1 and serine and glutamate on C2.	7.354e-74
NZ_CP013187.1\|WP_058028890.1\|704475_704982_+\|ATP-binding-protein	gnl\|CDD\|379324	pfam13671, AAA_33, AAA domain. This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.	4.78375e-31
NZ_CP013187.1\|WP_058028905.1\|724671_724950_+\|peptidylprolyl-isomerase	gnl\|CDD\|185338	PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional.	2.59466e-38
NZ_CP013187.1\|WP_058028907.1\|726208_727321_+\|FAD-dependent-monooxygenase	gnl\|CDD\|168661	PRK06753, PRK06753, hypothetical protein; Provisional.	4.30872e-46

>NZ_CP013187.1|WP_058028898.1|716255_717101_-|trypsin-like-serine-protease
MNLISKLILGGLITASLHANAMIIRHDVSDGKYIQQAADYPAIFPLKDDGKTKNCVGTLLTPQWAITAAHCTILLEPDSQLEIAGNKAKVHSIHLPPEYGYMKAIKNEQGKIIDIEDKVKDASFDIALLRLSHPLKGVQTFPLLEQKVNVNQTIEVMGWGDFGNGLEGVSRKERVNDRQLRVAHNKIDAINGNYLIFNFDAPDSKNALPLEGINGPGDSGSPALIKLPNGYFVAGISSGGDYPGVQTHKREGKYGWQEYYININAMTAWIAETMALSITKN
>NZ_CP013187.1|WP_058028897.1|715226_716090_+|DUF2063-domain-containing-protein
MKVPDLTQTQQWLSTVLMVRGDLPQKLNKAAANGLTLHECVKSSESLNAMRRVDIYAAGYVMRLVECLRGEFALLCRFMGDEVFDTFAKAFIVTLPSESWTLHQLGARFSDFLAHTKPEGDFNAHQQAMFSVPSELAKFERAKALALLKPGPETEYQSEAISELELLCGIAEERILAVPESVQLIHTEYSILPLVSQLEQAEPWTLPAAESVNIAISRQQYRLKVTTLNDWQTDLLLHFQAQPLCYRDAVTHCAERMNIAPQTLKSQLAIWLPSAVNIGLFSFQNNR
>NZ_CP013187.1|WP_058028896.1|714276_715227_+|DUF692-domain-containing-protein
MIKRTQTQQFSASAISKLGNLGFGVGLRSQHYPYIMSHLDQGTPLGVDWFEIISENYIDNHGYGRYVLDLLKEQYPLVMHGVSMNIGSSDPLNFEYLSKLKTLGEFVKPQLISDHLCWTGLAGLNSHDLLPMPLNDESLHHVIRRIDQVQDFLERPLILENPSTYLEFQHSTLTESEFFCELVKATGCGMLLDVNNVFVSSFNHGFNAEQFIHELPHEHIVQIHLAGPSDCGDCLIDTHDQPVPEKVWQLYQLAQSLTGGASTLLEWDANIPSFPELVEELNKAKLVLEGHIPQQDTVSKTNAISTPIVNERAELL
>NZ_CP013187.1|WP_058028895.1|711921_714264_+|hypothetical-protein
MNVQNKIDPSVEVGKEINPELLLSAMQKQKIKARDSKYKEADLSCLRAIAQAAINVELFTIPLYMTSLYSIQGTHQIADSSNLYPGRYWPGLGPSAGYIPEDRRNEYDVNLEPLFNIDCLAGESGNVNKQAEKYALSVNQQVFNGVYSVFIEEMLHLQLASNMASKLGLTPSFTSQALINEQYGWECYNNQSGIPHILDFADCTTDLSKLSPEVQTYFKKIFPGKTLQDLRVNATELNKEQTLLFMLIEETEENAKKIIQSKYLEPNKKTKRPKYFEQAPYDWWQPNNKESDLPLFGSIGHMYLSYWNYIQIQYDDGTSLLDYATIQRDYFNERSGDKGYQAQFPGINGSLNVKADHTVLKEALMNNVNAITDQGEGGGVAEMLSKCWVEEQWAQNLLAALAASSEEEHPSKVKEKFQPSAEALKADYPASGDEGPISGSACARITNKYKDHFQIFSDTLQLIVDFEKPNASSSERYMTWPTWFAEGNAWSSALLDPNGGDKAHKTNSQLPQVESVVQALNNLKLAANIGDTHKLFSQSAVGTIKGLTTALDRYWSGQTNEFPGPAMGGSGDRVSICWATTGIAPDLVTGIEPQNPQTLYHACQGMSYTNIGSDGLPPPEVYHSCKGSNDCKAQGGCGFVHSTTAGGSCGGSVAKGPKSAPADNKCNNLGGCAVPISASQLFPELADGEYKMQLFKFDLKNKNSFSAIDYTYPKSDDPCKGKQAPEKQDEHVLMPYEKGDGVYNIAWQAYCNANGLLDADGNPKEQPTPSDIRLALPPST
>NZ_CP013187.1|WP_058028894.1|710506_711427_-|hypothetical-protein
MKSLLEKNHPSLYEKLENEQCNEKKQEAYYEFVQSSNKIEKADFFTLLPDKRAALLDSTGKSIEKELKSLVDGLSDIADMVDKKKSHSEIADKMMDVGVAAFGVLATEAFENTLKDHDKITTEVIKSAIEIALDVAENLGEIGEIIAAIILVIIPIIYFMLKPAFTTVLIINDSDENYKFGKHFNTHGKTTSYTTSITSTFEKDGQTFSNAGFFTSSKKDGALYGTQSGFTLLTGQETLAFGAECPLNGSNNCYCEFDKSAEQISKLTEKKKDLYHEVSKGGLGLNIRGNSKSGGLAWFIGRIYNT
>NZ_CP013187.1|WP_058028893.1|706942_710233_+|S41-family-peptidase
MNKKTITLALAGLFSAASANASDNTKLLLSPTISKNHIAFVYAGDIYRTNKKGEEVVRLTSHAADERDPHLSPNGKWVAYTGGYDGNSDVYIISIDGGQPKRLTFHSSRDTVIGWADDGDSVLFTSYRETANGRTGQLYKVSVKGGLPQKVMEASVANGDLSSNNRYLAYNPHHPAHAGSSGWRNHRGGTTPPVWIYDLKENSYKEIPHVNASDTHPMWVGDKVYFLSDRSKHKRLYSYDDGKIKQVSKNKNWDITSADAYGREIVYSMGGELYIFDSKKKRSKKLDISLNPDLPQLRASWKSAMPSLTNAELSTTGKRVLLSARGEIFSVPIKDGATKNLTKSSGANDRDGLWSPKGDELAYITDENGLYQIVIADQFGKEQKRFAANESVADARLLHFTGDGKQLVYTDSKMNLWLLELDSGNKTKVMQNINMNGFNTAVSKDGKLLAYTKTNDNYFRDLYVYEIASGEHVKITDSMSHSTSPAFSPDGELLYFASSTNHGQSAFFLDMSTQENPQRYGLYAAVLKADGKSPLLPKLADEDAVEEKSTDDKSAAKDDSKEAKSDKKSDKQEVKPAIDAQGIETRIVALPVPQRFYSSLTVGDDKNLYFVENEQPGSSIETSGRALRDASLKRFNTKKRKVEEVKSGVFNVRTSHDGKHLLMLSQGNKLSVGKVGATVKAKAINTGGVKALIEPRQEWAQIFTEGWRNQRDYFYDANFHGLDWQKVYEKYQPLVEHVGRREDLNYLMREMISEMEVGHNVVYGGDGHREQRVAVGLLGADFVVKNNQYTVGKIYTGENWNPHLKAPLAMPGIEVAEGDVIHSVDGEPLTGADNIYRLFTGKANTQVRLEVSKTGKQEDAKVVVVETISNERMLRHWNWVEDNRKYVWQQTDGKAGYVYLPNTTTAGYTNFNRMFYPQTDKPSMIIDERSNGGGQAANYITDVLSRQYLAGWKYRSGDMILSTPAGAVYGPKVMLIDQDAGSGGDFLPYSFSRMGLGTLIGKTTWGGLIGVSANRNFVDGGRMNVPHFRFFTPDHEWRVENEGVKPDIDVEQDPVLVNQGKDPQLDRAISEVLEQLKTFKPVRHTVAPAMPKELGK
>NZ_CP013187.1|WP_058028892.1|705763_706393_-|uracil-phosphoribosyltransferase
MNVVEVKHPLISHKMGLLRTHDISVKAFRELVSEIGSLLTFEATRDLPLEDTTTASWQGDITTQQLAGKKLTLVPILRAGLGLNEGVLSIIPCARVSVVGLYRNEETLEPVPYFEKLTSDLDKRVALVVDPMLATGGSMVATIDLLKKQGVKDIKAMVLVAAPEGIQALEEAHPDVTLYTASVDEKLNEQGYILPGLGDAGDKIFGTKK
>NZ_CP013187.1|WP_058028891.1|705098_705575_+|hypothetical-protein
MNLKAIGLVLLSALHVSGCGSDAHAGNEIETPPVEGGKNTCTGFGSPHINVFIRESLNSDVLIENASVRVVMESENEESTVEPVFISSDDRNEDTKTGAYHAILEHNNLAFDVSIVAFAEGYYPFVTKNISFEVNTGCGASNDLTYDVYLCPVGTTCL
>NZ_CP013187.1|WP_058028890.1|704475_704982_+|ATP-binding-protein
MNSKAQLFLFCGKMGAGKSTYSQVIAKQRQAVLLSEDAWLAAHYPHQITKFNDYIHYSNLIKPFVKQHVQQLLSLGLSVVMDFPANTVKQRAWLVSLANEIQCEHTLFYLQVSDEVCLSRIAKRRLAQPKRAHFDTPEVFHQVTQYFEPPKASEQLAVEDVAESSTAI
>NZ_CP013187.1|WP_169792712.1|702796_704278_+|LytTR-family-transcriptional-regulator
MAIFTMIFSTQLAADEFNKYFIQEVRVCYDENEKISSKSFFLQNCKAMPLSEVKTGNKLTWIGTTFNLGDPEHIDKPVGLFFSAQAAAEFYFNGELIGRNGYPSLQAEEEQPGVMDFVTYIPKGLLKEHQNELVIKLSSHHKAFDISRSIPLAIVTYYDSPQDIVLHHYLPTLVPLGVLIIGLIFLSVLVWQDLSPRRGTFWLPILSLLVVLQLLTEVSRGLVAYEYPYHEVRLMVILLLGTLSGLSLLLYIIDGFVQNHRKACFLLSMLFTLVCIYLGNTIENKTVFAIQVPAGVSFLITAFQAFNRQENARKHASALFIFFIIIAVNPNQFLDLYFYYFVAALLLFFFVQHAIAYKHEQSQKQLAQQRAAQLQQALDEYSEQQTPSKIKLNLADKSEWISCENICFVKGARDYVEISLLDRRNVLHNETLTLMEEKLPATFLRIHRSYIVNKQLIQSLEKLPSGGGNLILSSGDTVPVSRRIMPKIRKQLG
>NZ_CP013187.1|WP_058028899.1|717773_718211_+|acyl-CoA-thioesterase
MQEFFEKFAINTKVNVVWGEMDALGHVNNVSYFRYFETARIDFLQQTGLLSILSEPTHSPVLRDTYAQYKRPVTFPDTLYIGSYITDIKEDRFTMRYEAFSESQQAICTTGYANVVMFNMKTGQKSPIPENMLAILKQYEMDVTQ
>NZ_CP013187.1|WP_058028900.1|718638_719634_+|fatty-acid-desaturase
MSKLSEKQNIKAIVSAIKAEEQSLRARFPILKMQNSIAMAIMLLSLFLLIGVGALYYFALIPAWLCIILAAFITSISHELEHDLIHKQYFSNRPFIHNFMMLTVWLMRPNTVNPWYRRQIHLHHHKVSGTEQDLEERLVGNGIKSPFLRAVVIMDGLLGLLINSKRFSKEIKGFKFLQVFNAGFPITSAYFAILYGVIAYHVVQFIQPFELPPWGTDVVAVAEFLMVVLIVPNMIRSTSLNFVTSSMHYYGGVTNLLEQTHVISSRWFLPFQLFCFDFGRTHTIHHFVPNQPFYIRQLISKKIQLVMAEHGVRFNDLHSLKHANRYLEKDE
>NZ_CP013187.1|WP_058028901.1|720060_720375_-|hypothetical-protein
MNKSENTIYVLSGYAKCATANNSKYKLGNKHSIGLLTTDENYQDNIHELENFIKNLGWDSISFCMVEEVADINTLSNDVLISSFVRAKQNGKSLVVNDLPITVH
>NZ_CP013187.1|WP_128724250.1|720718_721501_+|hypothetical-protein
MKVIIFKYKKSFLAICALIILIAGFYIDAVAGIITKPISYAAPPPFVEQYKELIQYSEPEMIIQTVDMSELGRDLSEHKKWIEGFSYEEVLVYKSIMLSESPSELWQLFTHPELDQRIKIASALAAVNIKYTHNEESGFSEKRNQFWLDSIAHMPDIRNALSEALIESARSGEYNRIPYTLAWLPEQGAETVELFLWAARHHPDHNVRRSCMYYVTILSKDKKMVETLLTDAKRDPSYGMRTLALNLRYRQLVGTLPNVH
>NZ_CP013187.1|WP_083496499.1|722104_723577_+|serine-hydrolase
MNKFILSSLVSSVMFLSSQSAMAEQDSRVETLKSYFKQCHKAQLCNGSFLVAEDGKVLYHQAMGVNHKGDTPLLTSHQFDIGSISKQFTAVAIMMLQEQGKLNFEDKVIQHIPDFPYEQITIKHLLNHTSGIADMMPYLTSLYRQGKVTASLDQNTVLDALIDQAPEAMFQPGAQWRYSNTGYVVLAILVSKISKQSYGEFLQSNIFTPLKMTQSLSRTSKTEHRLTERAYGFRQQINGTQRTFDQIPFFDIEGMGGIYSTTSDLYTWDQALHSHKLLSPKTWQAATQVTKTTDGKTKEYGFGFMLKADAFNQQKVGHSGHWRAFKSIYTRQIEDNRTIILLTNNGQDDSVDANEKAVDAILAGQTYEFIQQPISQVLYDVFKQDVSKAISAYHQLKADQAAGYDFSEGQLNDLGYVLLQEEHVQAAIAAFELNVEAFPKSPNALDSLAEALISNGQNRAATKRLKQALEIDPNFASAKQQLAKLNGSKL
>NZ_CP013187.1|WP_058028904.1|724034_724580_+|hypothetical-protein
MKKLLSTISLCLLSTTAHAEYDRYWLEISEGLQYGSSFKFKVRDNDSGWAFVHSKYTEEEFFGTTNLNRVTKARHDAEFKVYGVTRFVSMPFSWGYVDAGAGLGYGKGTWSENCEHYQNGFLGTSDICDLKDGTSIGIPVHVSASWGKFIGIGVNFDVFLSLERDTTAQVGFVIPFGLFTK
>NZ_CP013187.1|WP_058028905.1|724671_724950_+|peptidylprolyl-isomerase
MASTAHALHILVKHKEQAEDILKQLKKGAKFQTLAKKYSNCPTGKKGGDLGEFRRGTMVPQFDKVCFSCEVLTPQLVKTKFGWHVIKVLYRT
>NZ_CP013187.1|WP_058028906.1|725220_726111_-|LysR-family-transcriptional-regulator
MLLENIELKWLLSFKGVYEAGSFKLAAEQLQQPTSNISRHVALLEQALNVRLFERTTRKMAVSTAGEHLYHGLSPLLIAMADTLQEVQRQGDSIAGHLKIIAPDLPFLADATAQFCALHPRIHLSYDTHLNPAEGILEGFDIVFKFARGALEDSGWVAKEILRLPSCVVAAPKLLQHYNKPRSLKALARVPCITSLSVLQGMPWRFKNGECINVTSAYKVNSGQLAKAAALNALGFAILPLTACREELQSGELLEIELPFQPEDLVLYAYYSGKKYQLAKVTEFLDFIKQSIKEQC
>NZ_CP013187.1|WP_058028907.1|726208_727321_+|FAD-dependent-monooxygenase
MKTINHIAVIGGGVSGLALAIFARKQGIKVTIFEKQSTFSTIGAGVTLWPNGSFVLEKLCGLSKFTKYAGKPSLIRQLDGHDKVVSEFDISKLNSLCGLPTFSILRRDLIYVLVQELKALKARVYFGRKVGIDDVLKLQDQFDLVVGCEGRMSSPVREVLYQRTVTPKYQGFINIIGISQCRLSQGHDIIQDYRSCNNRFGIVPINKQLCYWAAAWPCEMDRARAESSWQKEMHQRFNQWPKNVQQALNYSEAGSVKHIFVHDMDSQPFWHYKNLIMIGDAAHAALPTSGQGACQALEDAWHLSQVLKSDKALDEVLKDFYNLRISKVSHAQNIGKQVARQIFFNKESVKSSGIGVSATQLSELYMQGLG
>NZ_CP013187.1|WP_058028908.1|727966_728737_+|DUF4097-family-beta-strand-repeat-protein
MNLVKPTLLFALCALTSASVFAHNGQRYTETVEKTFSADAGTQLQIENTNGKVEIEAWGKDEVLVTATIYSKDKEGRERVEVELSQRGNTIDIETHFAKQFGWNNSGYAKVDYFINVPAHIELDDVELNNGSLSIKGVTGAVNASLNNGSMVATGLAGNTRVENNNGSVKLSFSDVLTDLSDVDVESQNGSITVYFPDSIDASIKAKSNNGSISNNFGLEVDKSRSNRKTLSGEIGSGKAKVTLSSNNGSIRIKNL

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Crispr_ID: NZ_CP013187_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013187_4

719954-720042

Orphan

Consensus_repeat	Method
CCTTGCGCAAAATAACCTTGCTTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013187_4

>merge|NZ_CP013187|4|719954-720042|CRISPRCasFinder
CCTTGCGCAAAATAACCTTGCTTCGATTAGAATAGCCCGGCGGTTGCTAAACTTGCTTGCTTCACCTTGCGCAAAATAACCTTGCTTCG

>NZ_CP013187|4|4|719954-720042|CRISPRCasFinder
CCTTGCGCAAAATAACCTTGCTTCG	ATTAGAATAGCCCGGCGGTTGCTAAACTTGCTTGCTTCA
CCTTGCGCAAAATAACCTTGCTTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013187.1\|WP_058028897.1\|715226_716090_+\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|378264
NZ_CP013187.1\|WP_058028906.1\|725220_726111_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP013187.1\|WP_058028895.1\|711921_714264_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372375
NZ_CP013187.1\|WP_058028904.1\|724034_724580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013187.1\|WP_058028896.1\|714276_715227_+\|DUF692-domain-containing-protein	unknown	unknown	gnl\|CDD\|377459
NZ_CP013187.1\|WP_058028898.1\|716255_717101_-\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|238113
NZ_CP013187.1\|WP_083496499.1\|722104_723577_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP013187.1\|WP_058028900.1\|718638_719634_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
NZ_CP013187.1\|WP_058028899.1\|717773_718211_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP013187.1\|WP_058028891.1\|705098_705575_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013187.1\|WP_058028909.1\|728830_730624_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013187.1\|WP_128724250.1\|720718_721501_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013187.1\|WP_058028910.1\|730784_731732_-\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843
NZ_CP013187.1\|WP_058028907.1\|726208_727321_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|168661
NZ_CP013187.1\|WP_058028892.1\|705763_706393_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP013187.1\|WP_058028893.1\|706942_710233_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|143478
NZ_CP013187.1\|WP_058028894.1\|710506_711427_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013187.1\|WP_058028908.1\|727966_728737_+\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|372574
NZ_CP013187.1\|WP_058028905.1\|724671_724950_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|185338
NZ_CP013187.1\|WP_058028901.1\|720060_720375_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013187.1\|WP_058028897.1\|715226_716090_+\|DUF2063-domain-containing-protein	gnl\|CDD\|378264	pfam09836, DUF2063, Putative DNA-binding domain. This family represents the N-terminal part of a Neisseria protein, UniProtKB:Q5F5I0, Structure 3dee. It runs from residues 31-117 as a helical bundle with 4 main helices. \From genomic context and the fold of the C-terminal part, it is suggested that this protein is involved in transcriptional regulation.	1.53912e-11
NZ_CP013187.1\|WP_058028906.1\|725220_726111_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.71927e-40
NZ_CP013187.1\|WP_058028908.1\|727966_728737_+\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	1.78918e-06
NZ_CP013187.1\|WP_058028896.1\|714276_715227_+\|DUF692-domain-containing-protein	gnl\|CDD\|377459	pfam05114, DUF692, Protein of unknown function (DUF692). This family consists of several uncharacterized bacterial proteins.	8.13335e-144
NZ_CP013187.1\|WP_058028898.1\|716255_717101_-\|trypsin-like-serine-protease	gnl\|CDD\|238113	cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.	8.87613e-17
NZ_CP013187.1\|WP_083496499.1\|722104_723577_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	9.85502e-57
NZ_CP013187.1\|WP_058028900.1\|718638_719634_+\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	1.51084e-11
NZ_CP013187.1\|WP_058028899.1\|717773_718211_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	1.65506e-33
NZ_CP013187.1\|WP_058028909.1\|728830_730624_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.7934e-92
NZ_CP013187.1\|WP_058028910.1\|730784_731732_-\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	1.5369e-106
NZ_CP013187.1\|WP_058028892.1\|705763_706393_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	4.39344e-125
NZ_CP013187.1\|WP_058028893.1\|706942_710233_+\|S41-family-peptidase	gnl\|CDD\|143478	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active site tetrad residues are distributed between the C1 and C2 domains, with serine and histidine on C1 and serine and glutamate on C2.	7.354e-74
NZ_CP013187.1\|WP_058028895.1\|711921_714264_+\|hypothetical-protein	gnl\|CDD\|372375	pfam12902, Ferritin-like, Ferritin-like. This is a family of bacterial ferritin-like substances that also includes a C-terminal domain of VioB, polyketide synthase enzymes, that make up one of the key components of the violacein biosynthesis pathway. Violacein is a purple-coloured, broad-spectrum antibacterial pigment.	2.99669e-06
NZ_CP013187.1\|WP_058028905.1\|724671_724950_+\|peptidylprolyl-isomerase	gnl\|CDD\|185338	PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional.	2.59466e-38
NZ_CP013187.1\|WP_058028907.1\|726208_727321_+\|FAD-dependent-monooxygenase	gnl\|CDD\|168661	PRK06753, PRK06753, hypothetical protein; Provisional.	4.30872e-46

>NZ_CP013187.1|WP_058028900.1|718638_719634_+|fatty-acid-desaturase
MSKLSEKQNIKAIVSAIKAEEQSLRARFPILKMQNSIAMAIMLLSLFLLIGVGALYYFALIPAWLCIILAAFITSISHELEHDLIHKQYFSNRPFIHNFMMLTVWLMRPNTVNPWYRRQIHLHHHKVSGTEQDLEERLVGNGIKSPFLRAVVIMDGLLGLLINSKRFSKEIKGFKFLQVFNAGFPITSAYFAILYGVIAYHVVQFIQPFELPPWGTDVVAVAEFLMVVLIVPNMIRSTSLNFVTSSMHYYGGVTNLLEQTHVISSRWFLPFQLFCFDFGRTHTIHHFVPNQPFYIRQLISKKIQLVMAEHGVRFNDLHSLKHANRYLEKDE
>NZ_CP013187.1|WP_058028899.1|717773_718211_+|acyl-CoA-thioesterase
MQEFFEKFAINTKVNVVWGEMDALGHVNNVSYFRYFETARIDFLQQTGLLSILSEPTHSPVLRDTYAQYKRPVTFPDTLYIGSYITDIKEDRFTMRYEAFSESQQAICTTGYANVVMFNMKTGQKSPIPENMLAILKQYEMDVTQ
>NZ_CP013187.1|WP_058028898.1|716255_717101_-|trypsin-like-serine-protease
MNLISKLILGGLITASLHANAMIIRHDVSDGKYIQQAADYPAIFPLKDDGKTKNCVGTLLTPQWAITAAHCTILLEPDSQLEIAGNKAKVHSIHLPPEYGYMKAIKNEQGKIIDIEDKVKDASFDIALLRLSHPLKGVQTFPLLEQKVNVNQTIEVMGWGDFGNGLEGVSRKERVNDRQLRVAHNKIDAINGNYLIFNFDAPDSKNALPLEGINGPGDSGSPALIKLPNGYFVAGISSGGDYPGVQTHKREGKYGWQEYYININAMTAWIAETMALSITKN
>NZ_CP013187.1|WP_058028897.1|715226_716090_+|DUF2063-domain-containing-protein
MKVPDLTQTQQWLSTVLMVRGDLPQKLNKAAANGLTLHECVKSSESLNAMRRVDIYAAGYVMRLVECLRGEFALLCRFMGDEVFDTFAKAFIVTLPSESWTLHQLGARFSDFLAHTKPEGDFNAHQQAMFSVPSELAKFERAKALALLKPGPETEYQSEAISELELLCGIAEERILAVPESVQLIHTEYSILPLVSQLEQAEPWTLPAAESVNIAISRQQYRLKVTTLNDWQTDLLLHFQAQPLCYRDAVTHCAERMNIAPQTLKSQLAIWLPSAVNIGLFSFQNNR
>NZ_CP013187.1|WP_058028896.1|714276_715227_+|DUF692-domain-containing-protein
MIKRTQTQQFSASAISKLGNLGFGVGLRSQHYPYIMSHLDQGTPLGVDWFEIISENYIDNHGYGRYVLDLLKEQYPLVMHGVSMNIGSSDPLNFEYLSKLKTLGEFVKPQLISDHLCWTGLAGLNSHDLLPMPLNDESLHHVIRRIDQVQDFLERPLILENPSTYLEFQHSTLTESEFFCELVKATGCGMLLDVNNVFVSSFNHGFNAEQFIHELPHEHIVQIHLAGPSDCGDCLIDTHDQPVPEKVWQLYQLAQSLTGGASTLLEWDANIPSFPELVEELNKAKLVLEGHIPQQDTVSKTNAISTPIVNERAELL
>NZ_CP013187.1|WP_058028895.1|711921_714264_+|hypothetical-protein
MNVQNKIDPSVEVGKEINPELLLSAMQKQKIKARDSKYKEADLSCLRAIAQAAINVELFTIPLYMTSLYSIQGTHQIADSSNLYPGRYWPGLGPSAGYIPEDRRNEYDVNLEPLFNIDCLAGESGNVNKQAEKYALSVNQQVFNGVYSVFIEEMLHLQLASNMASKLGLTPSFTSQALINEQYGWECYNNQSGIPHILDFADCTTDLSKLSPEVQTYFKKIFPGKTLQDLRVNATELNKEQTLLFMLIEETEENAKKIIQSKYLEPNKKTKRPKYFEQAPYDWWQPNNKESDLPLFGSIGHMYLSYWNYIQIQYDDGTSLLDYATIQRDYFNERSGDKGYQAQFPGINGSLNVKADHTVLKEALMNNVNAITDQGEGGGVAEMLSKCWVEEQWAQNLLAALAASSEEEHPSKVKEKFQPSAEALKADYPASGDEGPISGSACARITNKYKDHFQIFSDTLQLIVDFEKPNASSSERYMTWPTWFAEGNAWSSALLDPNGGDKAHKTNSQLPQVESVVQALNNLKLAANIGDTHKLFSQSAVGTIKGLTTALDRYWSGQTNEFPGPAMGGSGDRVSICWATTGIAPDLVTGIEPQNPQTLYHACQGMSYTNIGSDGLPPPEVYHSCKGSNDCKAQGGCGFVHSTTAGGSCGGSVAKGPKSAPADNKCNNLGGCAVPISASQLFPELADGEYKMQLFKFDLKNKNSFSAIDYTYPKSDDPCKGKQAPEKQDEHVLMPYEKGDGVYNIAWQAYCNANGLLDADGNPKEQPTPSDIRLALPPST
>NZ_CP013187.1|WP_058028894.1|710506_711427_-|hypothetical-protein
MKSLLEKNHPSLYEKLENEQCNEKKQEAYYEFVQSSNKIEKADFFTLLPDKRAALLDSTGKSIEKELKSLVDGLSDIADMVDKKKSHSEIADKMMDVGVAAFGVLATEAFENTLKDHDKITTEVIKSAIEIALDVAENLGEIGEIIAAIILVIIPIIYFMLKPAFTTVLIINDSDENYKFGKHFNTHGKTTSYTTSITSTFEKDGQTFSNAGFFTSSKKDGALYGTQSGFTLLTGQETLAFGAECPLNGSNNCYCEFDKSAEQISKLTEKKKDLYHEVSKGGLGLNIRGNSKSGGLAWFIGRIYNT
>NZ_CP013187.1|WP_058028893.1|706942_710233_+|S41-family-peptidase
MNKKTITLALAGLFSAASANASDNTKLLLSPTISKNHIAFVYAGDIYRTNKKGEEVVRLTSHAADERDPHLSPNGKWVAYTGGYDGNSDVYIISIDGGQPKRLTFHSSRDTVIGWADDGDSVLFTSYRETANGRTGQLYKVSVKGGLPQKVMEASVANGDLSSNNRYLAYNPHHPAHAGSSGWRNHRGGTTPPVWIYDLKENSYKEIPHVNASDTHPMWVGDKVYFLSDRSKHKRLYSYDDGKIKQVSKNKNWDITSADAYGREIVYSMGGELYIFDSKKKRSKKLDISLNPDLPQLRASWKSAMPSLTNAELSTTGKRVLLSARGEIFSVPIKDGATKNLTKSSGANDRDGLWSPKGDELAYITDENGLYQIVIADQFGKEQKRFAANESVADARLLHFTGDGKQLVYTDSKMNLWLLELDSGNKTKVMQNINMNGFNTAVSKDGKLLAYTKTNDNYFRDLYVYEIASGEHVKITDSMSHSTSPAFSPDGELLYFASSTNHGQSAFFLDMSTQENPQRYGLYAAVLKADGKSPLLPKLADEDAVEEKSTDDKSAAKDDSKEAKSDKKSDKQEVKPAIDAQGIETRIVALPVPQRFYSSLTVGDDKNLYFVENEQPGSSIETSGRALRDASLKRFNTKKRKVEEVKSGVFNVRTSHDGKHLLMLSQGNKLSVGKVGATVKAKAINTGGVKALIEPRQEWAQIFTEGWRNQRDYFYDANFHGLDWQKVYEKYQPLVEHVGRREDLNYLMREMISEMEVGHNVVYGGDGHREQRVAVGLLGADFVVKNNQYTVGKIYTGENWNPHLKAPLAMPGIEVAEGDVIHSVDGEPLTGADNIYRLFTGKANTQVRLEVSKTGKQEDAKVVVVETISNERMLRHWNWVEDNRKYVWQQTDGKAGYVYLPNTTTAGYTNFNRMFYPQTDKPSMIIDERSNGGGQAANYITDVLSRQYLAGWKYRSGDMILSTPAGAVYGPKVMLIDQDAGSGGDFLPYSFSRMGLGTLIGKTTWGGLIGVSANRNFVDGGRMNVPHFRFFTPDHEWRVENEGVKPDIDVEQDPVLVNQGKDPQLDRAISEVLEQLKTFKPVRHTVAPAMPKELGK
>NZ_CP013187.1|WP_058028892.1|705763_706393_-|uracil-phosphoribosyltransferase
MNVVEVKHPLISHKMGLLRTHDISVKAFRELVSEIGSLLTFEATRDLPLEDTTTASWQGDITTQQLAGKKLTLVPILRAGLGLNEGVLSIIPCARVSVVGLYRNEETLEPVPYFEKLTSDLDKRVALVVDPMLATGGSMVATIDLLKKQGVKDIKAMVLVAAPEGIQALEEAHPDVTLYTASVDEKLNEQGYILPGLGDAGDKIFGTKK
>NZ_CP013187.1|WP_058028891.1|705098_705575_+|hypothetical-protein
MNLKAIGLVLLSALHVSGCGSDAHAGNEIETPPVEGGKNTCTGFGSPHINVFIRESLNSDVLIENASVRVVMESENEESTVEPVFISSDDRNEDTKTGAYHAILEHNNLAFDVSIVAFAEGYYPFVTKNISFEVNTGCGASNDLTYDVYLCPVGTTCL
>NZ_CP013187.1|WP_058028901.1|720060_720375_-|hypothetical-protein
MNKSENTIYVLSGYAKCATANNSKYKLGNKHSIGLLTTDENYQDNIHELENFIKNLGWDSISFCMVEEVADINTLSNDVLISSFVRAKQNGKSLVVNDLPITVH
>NZ_CP013187.1|WP_128724250.1|720718_721501_+|hypothetical-protein
MKVIIFKYKKSFLAICALIILIAGFYIDAVAGIITKPISYAAPPPFVEQYKELIQYSEPEMIIQTVDMSELGRDLSEHKKWIEGFSYEEVLVYKSIMLSESPSELWQLFTHPELDQRIKIASALAAVNIKYTHNEESGFSEKRNQFWLDSIAHMPDIRNALSEALIESARSGEYNRIPYTLAWLPEQGAETVELFLWAARHHPDHNVRRSCMYYVTILSKDKKMVETLLTDAKRDPSYGMRTLALNLRYRQLVGTLPNVH
>NZ_CP013187.1|WP_083496499.1|722104_723577_+|serine-hydrolase
MNKFILSSLVSSVMFLSSQSAMAEQDSRVETLKSYFKQCHKAQLCNGSFLVAEDGKVLYHQAMGVNHKGDTPLLTSHQFDIGSISKQFTAVAIMMLQEQGKLNFEDKVIQHIPDFPYEQITIKHLLNHTSGIADMMPYLTSLYRQGKVTASLDQNTVLDALIDQAPEAMFQPGAQWRYSNTGYVVLAILVSKISKQSYGEFLQSNIFTPLKMTQSLSRTSKTEHRLTERAYGFRQQINGTQRTFDQIPFFDIEGMGGIYSTTSDLYTWDQALHSHKLLSPKTWQAATQVTKTTDGKTKEYGFGFMLKADAFNQQKVGHSGHWRAFKSIYTRQIEDNRTIILLTNNGQDDSVDANEKAVDAILAGQTYEFIQQPISQVLYDVFKQDVSKAISAYHQLKADQAAGYDFSEGQLNDLGYVLLQEEHVQAAIAAFELNVEAFPKSPNALDSLAEALISNGQNRAATKRLKQALEIDPNFASAKQQLAKLNGSKL
>NZ_CP013187.1|WP_058028904.1|724034_724580_+|hypothetical-protein
MKKLLSTISLCLLSTTAHAEYDRYWLEISEGLQYGSSFKFKVRDNDSGWAFVHSKYTEEEFFGTTNLNRVTKARHDAEFKVYGVTRFVSMPFSWGYVDAGAGLGYGKGTWSENCEHYQNGFLGTSDICDLKDGTSIGIPVHVSASWGKFIGIGVNFDVFLSLERDTTAQVGFVIPFGLFTK
>NZ_CP013187.1|WP_058028905.1|724671_724950_+|peptidylprolyl-isomerase
MASTAHALHILVKHKEQAEDILKQLKKGAKFQTLAKKYSNCPTGKKGGDLGEFRRGTMVPQFDKVCFSCEVLTPQLVKTKFGWHVIKVLYRT
>NZ_CP013187.1|WP_058028906.1|725220_726111_-|LysR-family-transcriptional-regulator
MLLENIELKWLLSFKGVYEAGSFKLAAEQLQQPTSNISRHVALLEQALNVRLFERTTRKMAVSTAGEHLYHGLSPLLIAMADTLQEVQRQGDSIAGHLKIIAPDLPFLADATAQFCALHPRIHLSYDTHLNPAEGILEGFDIVFKFARGALEDSGWVAKEILRLPSCVVAAPKLLQHYNKPRSLKALARVPCITSLSVLQGMPWRFKNGECINVTSAYKVNSGQLAKAAALNALGFAILPLTACREELQSGELLEIELPFQPEDLVLYAYYSGKKYQLAKVTEFLDFIKQSIKEQC
>NZ_CP013187.1|WP_058028907.1|726208_727321_+|FAD-dependent-monooxygenase
MKTINHIAVIGGGVSGLALAIFARKQGIKVTIFEKQSTFSTIGAGVTLWPNGSFVLEKLCGLSKFTKYAGKPSLIRQLDGHDKVVSEFDISKLNSLCGLPTFSILRRDLIYVLVQELKALKARVYFGRKVGIDDVLKLQDQFDLVVGCEGRMSSPVREVLYQRTVTPKYQGFINIIGISQCRLSQGHDIIQDYRSCNNRFGIVPINKQLCYWAAAWPCEMDRARAESSWQKEMHQRFNQWPKNVQQALNYSEAGSVKHIFVHDMDSQPFWHYKNLIMIGDAAHAALPTSGQGACQALEDAWHLSQVLKSDKALDEVLKDFYNLRISKVSHAQNIGKQVARQIFFNKESVKSSGIGVSATQLSELYMQGLG
>NZ_CP013187.1|WP_058028908.1|727966_728737_+|DUF4097-family-beta-strand-repeat-protein
MNLVKPTLLFALCALTSASVFAHNGQRYTETVEKTFSADAGTQLQIENTNGKVEIEAWGKDEVLVTATIYSKDKEGRERVEVELSQRGNTIDIETHFAKQFGWNNSGYAKVDYFINVPAHIELDDVELNNGSLSIKGVTGAVNASLNNGSMVATGLAGNTRVENNNGSVKLSFSDVLTDLSDVDVESQNGSITVYFPDSIDASIKAKSNNGSISNNFGLEVDKSRSNRKTLSGEIGSGKAKVTLSSNNGSIRIKNL
>NZ_CP013187.1|WP_058028909.1|728830_730624_-|ABC-transporter-ATP-binding-protein
MKALFKLFEKLGQKDSFNSQLRETAHNFAFIRQCTKEFSGWIIIAFCIALFGGVLQIVTFDFLGDLIDWLDMTHDRTQLNEKGLELTLVAFTIAVIIPLITLLKNLIFQQLLGPNLQKNTLIKLYRTLIASPASYHEEDDPGETAIVIVDTSEAIIDTVLQFCGVAGFLLAFLGALLLYIGNIDGWLVIPFIAWTSIFIALLVGRWIPNARVTNRLEAQSCAEITGKFTERFARIRTVKMLSNSQFEQKFAEKWANRHRRVVAKEFRVFSSFASMVGLLNGVLIVGTGILCLKLWTNNSLTIGEFSMVLALVYRVISLSEWCLEEFDAFFVSWGQISVGRNVINDFLEEVEHDEEEGTFRISRGKITFKNVEFGYENKAPLFSNFSLKIKPGEKVGIIGPSGAGKSSLLNMLTGIDEIEKGAIYIDGKNIEDYETGNICGEISFLNQDIGLFNQSIYNNVVFGLNHIKKADVYLALEKANALDFVLQYQDAQGRQGLDAFIGENGGQLSGGQRQRLALARAILRDKKLLLLDEANSALDPALKADFIHSLKTLMKGKTVISIAHSYDVLTMMDRIIEIKDGKIIRDGKPEEILTAVT
>NZ_CP013187.1|WP_058028910.1|730784_731732_-|polyamine-aminopropyltransferase
MTKIKWHYEQMTSGIHVALRSEKELANVETEFQDVSIFETRHLGKVMRIDDGIQVTTRGEHIYHEMMVHVPTLVHNRVKNVLIVGGGDGGSAREILKHHGVEKVVMLDIDEQIIELSREFLPEINNGAFDDPRFELRIGDGAEIIPQYSNCFDLIVLDAADPDGGASETLFTQSFFNNCLSALKSDGILVAQGGTPYFEPYMMQSMVSRLTQAFNNPAGIYMGGCFDYFGGSHAFIWATRSGTINTLSLEEIESRFNKADIQTKYYSPEAHFGSFFLSKDMREYVNQAVKCENVDQLSMPEAGDWDDYTPETSHL

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Crispr_ID: NZ_CP013187_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013187_5

2661503-2661653

Orphan

Consensus_repeat	Method
GCTCATTTCACCTTGCTCAAAAGTAACCTTGCTTCGCAACGTATATTTTGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013187_5

>merge|NZ_CP013187|5|2661503-2661653|CRISPRCasFinder
GCTCATTTCACCTTGCTCAAAAGTAACCTTGCTTCGCAACGTATATTTTGCACGATAAGTCGGTGCTACCAATGATGTTTCTATCAACAGTTAAAATCGCTCATTTCACCTTGCGCAAAAGTAACCTTGCTTCGCAACGTATATTTTGCAC

>NZ_CP013187|5|5|2661503-2661653|CRISPRCasFinder
GCTCATTTCACCTTGCTCAAAAGTAACCTTGCTTCGCAACGTATATTTTGCAC	GATAAGTCGGTGCTACCAATGATGTTTCTATCAACAGTTAAAATC
GCTCATTTCACCTTGCGCAAAAGTAACCTTGCTTCGCAACGTATATTTTGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013187.1\|WP_058030528.1\|2657844_2658285_-\|flavodoxin	unknown	unknown	gnl\|CDD\|181230
NZ_CP013187.1\|WP_058030535.1\|2663774_2664038_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372557
NZ_CP013187.1\|WP_058031625.1\|2664887_2665427_-\|SecY-interacting-protein	unknown	unknown	gnl\|CDD\|319993
NZ_CP013187.1\|WP_058031627.1\|2671989_2673726_-\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_CP013187.1\|WP_058030534.1\|2662872_2663529_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224361
NZ_CP013187.1\|WP_058030538.1\|2667434_2668265_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP013187.1\|WP_058030527.1\|2657255_2657843_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013187.1\|WP_058030536.1\|2664040_2664814_+\|Zn-ribbon-containing-protein	unknown	unknown	gnl\|CDD\|370804
NZ_CP013187.1\|WP_058030525.1\|2653729_2656348_+\|[protein-PII]-uridylyltransferase	unknown	unknown	gnl\|CDD\|235329
NZ_CP013187.1\|WP_058030539.1\|2668261_2671990_-\|translocation/assembly-module-TamB-domain-containing-protein	unknown	unknown	gnl\|CDD\|225463
NZ_CP013187.1\|WP_058030524.1\|2653275_2653485_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013187.1\|WP_058030532.1\|2660526_2660829_+\|DUF3301-domain-containing-protein	unknown	unknown	gnl\|CDD\|378706
NZ_CP013187.1\|WP_058030540.1\|2673849_2674182_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|377727
NZ_CP013187.1\|WP_058030526.1\|2656356_2657184_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_CP013187.1\|WP_058030537.1\|2665487_2666333_+\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NZ_CP013187.1\|WP_058030531.1\|2659498_2660527_+\|DUF3549-family-protein	unknown	unknown	gnl\|CDD\|378801
NZ_CP013187.1\|WP_058030523.1\|2652428_2653217_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP013187.1\|WP_058030529.1\|2658284_2659019_-\|tRNA-pseudouridine(65)-synthase-TruC	unknown	unknown	gnl\|CDD\|182971
NZ_CP013187.1\|WP_058030530.1\|2659031_2659358_-\|YqcC-family-protein	unknown	unknown	gnl\|CDD\|377282
NZ_CP013187.1\|WP_083496578.1\|2666542_2667430_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|365914

Protein	Function_ID	Function_description	E-value
NZ_CP013187.1\|WP_058030528.1\|2657844_2658285_-\|flavodoxin	gnl\|CDD\|181230	PRK08105, PRK08105, flavodoxin; Provisional.	3.10734e-62
NZ_CP013187.1\|WP_058030535.1\|2663774_2664038_+\|hypothetical-protein	gnl\|CDD\|372557	pfam13314, DUF4083, Domain of unknown function (DUF4083). This is a family of very short, approximately 60 residue, proteins from Firmicutes, that are all putatively annotated as being MutT/Nudix. However, the characteristic Nudix motif of GX(5)EX(7)REUXEE is absent.	0.00842759
NZ_CP013187.1\|WP_058031625.1\|2664887_2665427_-\|SecY-interacting-protein	gnl\|CDD\|319993	cd16323, Syd, Syd, a SecY-interacting protein. This family contains the Syd protein that has been implicated in the Sec-dependent transport of polypeptides across the inner membrane in bacteria. Syd has been shown to bind the SecY subunit of membrane-embedded SecYEG heterotrimer (also known as core translocon or SecY complex) which is a conserved protein-conducting channel essential for the biogenesis of most of the secretory and integral membrane proteins. The SecY-binding site of Syd is a conserved concave and electronegative groove that forms interactions with the electropositive loops of the SecY subunit. Syd is also known to verify the proper assembly of the SecY complex in the membrane by interfering with protein translocation only when the channel displays abnormal SecY-SecE associations. Operon analysis has shown that Syd protein may function as immunity protein in bacterial toxin systems.	2.03802e-78
NZ_CP013187.1\|WP_058031627.1\|2671989_2673726_-\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	2.40322e-104
NZ_CP013187.1\|WP_058030534.1\|2662872_2663529_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224361	COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only].	0.00246608
NZ_CP013187.1\|WP_058030538.1\|2667434_2668265_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	1.61277e-06
NZ_CP013187.1\|WP_058030531.1\|2659498_2660527_+\|DUF3549-family-protein	gnl\|CDD\|378801	pfam12069, DUF3549, Protein of unknown function (DUF3549). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.	7.97636e-137
NZ_CP013187.1\|WP_058030525.1\|2653729_2656348_+\|[protein-PII]-uridylyltransferase	gnl\|CDD\|235329	PRK05007, PRK05007, bifunctional uridylyltransferase/uridylyl-removing protein GlnD.	0
NZ_CP013187.1\|WP_058030539.1\|2668261_2671990_-\|translocation/assembly-module-TamB-domain-containing-protein	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	3.6303e-124
NZ_CP013187.1\|WP_058030532.1\|2660526_2660829_+\|DUF3301-domain-containing-protein	gnl\|CDD\|378706	pfam11743, DUF3301, Protein of unknown function (DUF3301). This family is conserved in Proteobacteria, but the function is not known.	8.73695e-27
NZ_CP013187.1\|WP_058030540.1\|2673849_2674182_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|377727	pfam06877, RraB, Regulator of ribonuclease activity B. This family of proteins regulate mRNA abundance by binding to RNaseE and inhibiting its endonucleolytic activity. A subset of these proteins are predicted to function as immunity proteins.	6.16351e-20
NZ_CP013187.1\|WP_058030526.1\|2656356_2657184_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0
NZ_CP013187.1\|WP_058030537.1\|2665487_2666333_+\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	0
NZ_CP013187.1\|WP_058030536.1\|2664040_2664814_+\|Zn-ribbon-containing-protein	gnl\|CDD\|370804	pfam10071, DUF2310, Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310). Members of this family of proteobacterial zinc ribbon proteins are thought to bind to nucleic acids, however their exact function has not as yet been defined.	6.42746e-153
NZ_CP013187.1\|WP_058030523.1\|2652428_2653217_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	9.3566e-174
NZ_CP013187.1\|WP_058030529.1\|2658284_2659019_-\|tRNA-pseudouridine(65)-synthase-TruC	gnl\|CDD\|182971	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional.	9.55795e-129
NZ_CP013187.1\|WP_058030530.1\|2659031_2659358_-\|YqcC-family-protein	gnl\|CDD\|377282	pfam04287, DUF446, tRNA pseudouridine synthase C. This family is suggested to be the catalytic domain of tRNA pseudouridine synthase C by association. The structure has been solved for one member, as Structure 2HGK, which by inference is designated in this way.	5.43304e-38
NZ_CP013187.1\|WP_083496578.1\|2666542_2667430_-\|peptidylprolyl-isomerase	gnl\|CDD\|365914	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilized in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function.	6.14067e-31

>NZ_CP013187.1|WP_058030532.1|2660526_2660829_+|DUF3301-domain-containing-protein
MATLWLFIVIGSVIGFFWYSRKIAEAANEHAQRQAKQLQVQLLSVACKKVLPGILKSGRLGIKSQFLFEFSSDGESLYQGYLYLENEKLVQADIPPHRLG
>NZ_CP013187.1|WP_058030531.1|2659498_2660527_+|DUF3549-family-protein
MTAHISTLGDLLNTAGTQWRVYDMGRKITKIDKALFNQLENGQVPYPYPLAGHALIAIQFWDNQATADPYVWFLKMPLDEQSKLVLASRDHFANMVLEALGTELTGEQADGKLDNNPYVFTPNANKLAAFNALLKTELKRPASQYYEFTEQFFAGNLTDDAWQSIAVQGLADFAFRLDHGQNNANLTKVWTSLPQEVQQPLSAMLEHVEINTQLAELFFTQCEQAIAENNLNLLINNMRALSGSKAQGLKSQLVEQVLASELGNQPDVLLTLAGRYWLCFEKPEALFKLLDLAVNNEQMPELFPSIFADLVAIPSLRPHVLGILRAENRSDTLSRAIGRLFS
>NZ_CP013187.1|WP_058030530.1|2659031_2659358_-|YqcC-family-protein
MSHAQYQAVYTLLKELEAVLRIAKLWQSESIEAEKLNSTAPFCCDVMTFEQWLQFVFIPKMSLMIEQGMALPANMSIAPMAEMSFATHPQYSQILSLLTKLDESLQKN
>NZ_CP013187.1|WP_058030529.1|2658284_2659019_-|tRNA-pseudouridine(65)-synthase-TruC
MLEIVYQDENYVAINKPSGLLVHRSFLDKRETQFAMQMLRDQLGQHVFPVHRLDRPTSGILLFALSSEAARDMNQVFIEGKIEKRYLALVRGFATEHVYLDRPLKEHLDKIADKFADQDKAPQEAQTEFNCLHQASLPIPFGKFPSIRYSLVECFPKTGRKHQIRRHLKHLAHPILGDVNHGDNKHNHFFYEHFGLQRLMLFATRLKFVHPYTKQEITIRANLGEEMLNICAQLGWPSSEQDYQ
>NZ_CP013187.1|WP_058030528.1|2657844_2658285_-|flavodoxin
MASISIFVGSVYGNAQSLAEQVQTALSSSHQVRLFESASIDDVKAAEVALFITSTTGSGDLPDNIEPLIMQLRSQSPMLTGKKAGVISLGDSSYGDTYCGAGKQVDALLQELSVQQTAPRLDVDACEYFEPWEVVEAWLTDWQKTL
>NZ_CP013187.1|WP_058030527.1|2657255_2657843_-|hypothetical-protein
MSRLQQFKWVFLLSSILIVLPAIESSWFDNAFGLKWGSEKLMYYFSVFLVPLKLAMIIAGCWLLIYFVKHNEVSSKVKLAVLPLMFIASVQVIMLSITSVYYVFNGTKADNYIEQANISIQSQAPGKLLTAYHDINIMCDRGLGFYELLSVIKEPWLGKALAIESYEPLEQLTISFTADNQRQFKRYDLQGLSCN
>NZ_CP013187.1|WP_058030526.1|2656356_2657184_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MSDLKTIIEQAWEQRDGITPTQVSDEVNDAIIQSLALLDSGAARVAEKISGEWVVHQWLKKAVLLSFRIRDNQPMNDGVNQFYDKVPLKFSDYTPEQFQQGGMRVVPNAVARQGSFVGKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGAVISMGVYISQSTRIYDRETGEIHYGRVPAGAVVVPGSLPSKDGSHSLYAAIIVKKVDQQTREKVGINALLRSIDE
>NZ_CP013187.1|WP_058030525.1|2653729_2656348_+|[protein-PII]-uridylyltransferase
MALPNKLKTLLDSANSLDDFKDCSAYFYKWLSNEFSKQPVKHLIRARAEFVDLLLQKLYVITSLNKHDDIALIAVGGYGRGELHPYSDIDFLLLVRSEPNDQLKESLGQFVTHLWDLGLEIGHSVRTHEQVLEQKKQDVHFTTSLLECRLISGNELEFERLKSHIIETPIWRSEEFFIAKVDEQKIRRKKCHGTAYNLEPNVKENPGGLRDLQTIFWVAKKHFHAETLRELISHGYLTHEEYQELLECIENLWNIRFALHLAAGRNENRLLFDYQPHAAELLGFGSEGKASVERMMKRLFRIMSRVREMNQMLLSYFEQSILVDQVNHKPQPLDKNFERVGNRIQVTDPSVFFKREHIFVLFEHIADNPEITDIEPNTLRTMRQVRRRLLGDLQDYAGCRDAFLRLIKHPNGMGRAFTLMHKHGIIAAYLPQWRNIFGQMQFDLFHAYTVDEHTHKLINNIYKYFDKNKQKDFPICSEIVTRMDKPELLYLAGIFHDIAKGRGGDHSELGAVDASTFCKVHGFSNSEARLVAWLVENHLLMSVTAQRKDINDPNVIAEFASHVKNERQLDYLYCLTVADIRATNDNLWNDWKNTLLRELYLHTQRALRAGLENPMDMRDQIRDKKQQAKHRLIELGFEESQIDFIWSRFKANYFTGFSEQQISWQSEHLLKVKDLNDFSVIVGEKPLHGGTQVFVYSPYEASLFAKLVSVIGSKKAQIQHAQVMTTKDGFVVFNFVILEQDGDPVSVNRARSIRKGIESILQDPKKKIRVKKNRSHRFKDFNIKPKVIVRPHARENRNLIEIQAIDIPGLLTKIAEVFQANSLHIHAARITTVGERAEDFFVISNKDYQALDEDHKIELQRDLMKKLNAETN
>NZ_CP013187.1|WP_058030524.1|2653275_2653485_-|hypothetical-protein
MKNTFKTCLIASITFFAASLAPISESIALPSGGSYICDRSVLYYVYFEGGEFKRIRVSGKCEGTGFLDF
>NZ_CP013187.1|WP_058030523.1|2652428_2653217_+|type-I-methionyl-aminopeptidase
MSAVIKTPEEIEKMRVAGRLAAEVLEMIEPHVKPGVTTEELNTICHNYIVDVQDAVPAPLNYHGFPKSICTSVNHVICHGIPNDKPLKDGDIINIDITVIKDGYHGDTSKMFHVGTPNIQGKRLAQITQESLYLAIKMVKPGVRLGDIGAAIQKYAEGFSYSIVREYCGHGIGAEFHEEPQVMHYGKPGTGETLKAGMCLTIEPMVNAGKRQCKLLKDGWTVVTKDRSLSAQWEHTLLVTDNGVEILTLRNDETIERVIEHK
>NZ_CP013187.1|WP_058030534.1|2662872_2663529_-|GNAT-family-N-acetyltransferase
MKIVEADQLSLKYLEPEEINIAASLLFQAYQSDELLKQVLSADSDDDFAKKLRALIREELQTFSQSGQAMLGAFIDEQLVGVACAIATNGPLSAQRFWHWRLKLMLSAGYVQTKQLVAKEQAIRAALEQYGECFYLSLIAIHPNVQGQGLGHYLLNGVEQLHLAEEEITGVAVFITQTAQKAFFLKHQYEVIEQMTFGEVSGELMYKKLDADGSENSL
>NZ_CP013187.1|WP_058030535.1|2663774_2664038_+|hypothetical-protein
MHPAVHSAIAALVAENKTPTVALTKSKLSEPVPMPLVIAGLTAYKNDPNCINTQPAATPKVKATEQSQLDRIEQKLDRLLALLEKDN
>NZ_CP013187.1|WP_058030536.1|2664040_2664814_+|Zn-ribbon-containing-protein
MFVVDLTFDCYQDTTLDDAERAINRVVNALRFNGQIIGDEFPTVLKDGYFITRVMCPLEDALHPLNHSPFVKKAIELLQEAGLLAPKVKVIGQDIHANGADLCDAPSSYILYTTYVHTCSPLYCGDDFQPVPLYKIPAIANGDYKALIKWQEDWQACDQIQINGATRCEFAALEEISSTESDLFRRGMDLSKRIRFLTKKPVYYYLYRVGGESLEAEQARKCPSCGGDWKLDEPWFGLFDFRCDSCELVSNISWDFQ
>NZ_CP013187.1|WP_058031625.1|2664887_2665427_-|SecY-interacting-protein
MTIKPLLSELHDKFKSHYQQQHGTLPCMYHDADWPSPCEVGEVLSEQQIQWQAVPQPAKNSLNDLANALECGFPDALNEFYSSFYAGNIIGKVEGHQIELLQAWNEDDFVRLQQNITGHVLMKRKLKHADTVFIGLTEQDDLLITVELETSKVWLEYVGKRPHHVLSDSLEAFLQSIEF
>NZ_CP013187.1|WP_058030537.1|2665487_2666333_+|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MTDYNNAPELKESVLGKTTEYASQYDASLLFPIARKLNRDQIAVDEQNLPFKGEDTWTGYELSWLNSKGKPQVAVAAFVFPCQSSHIIESKSFKLYLNSFNQTKFASFDEVQTILTNDLSKAAQTDVEVTLFKAEDYACIPFTAMPGECIDELDIEVDTYSPQEGLIVVKDGNEVTETLHSHLLKSNCLITSQPDWASIVISYTGKPVCKESLLKYLISFRDHNEFHEQCVERIYCDLMRELNPSKLEVYARYTRRGGLDINPYRSSESDKTAYHIRTNRQ
>NZ_CP013187.1|WP_083496578.1|2666542_2667430_-|peptidylprolyl-isomerase
MLLRAFGLTACVLLAGCSSTQNTESVPIKPEVRSPSTIISSASADVWQQVNNDDVLRIDLPTGRVYVHLNPELAPGHVDNIKKLAREGFYDGLNVYRFVESFVAQGGDQSGEKQPTQGSKGIAGEMFLTTETSLEITPLNALDGYADKTGFLNGFAVAQNSDGKKTWMTHCTGTFAMARGNEIDSGGTEFYITLAPQRYLDKNTTVFGRVLEGMEHAQRLMRTPVEGQPFNLISQVRVLSDISGEDNSAFTVFDTSSEDFKELIESRKNRPSEWFVDKPNHTDVCSVSIPTKRLN
>NZ_CP013187.1|WP_058030538.1|2667434_2668265_-|transporter-substrate-binding-domain-containing-protein
MKSWIIALCLNACFCFSACAEQTVRITSGADPYVIALLNHTLSYQNEVHTLDFVKNIPTQNRAIRLLGAENGIDVFWSVTSDEREKQALAVRIPIVKGVLGYRLGVIKKSRLEFFTKLRSDGELKKLRYGLRTDWPDTVIFKDNDFNVLEYSQENSGYDLLEASRIDVLPIDALFANDIANMSDLTIDPAHVFYYPSAVYFFVDKNNKTLYQKLKVGLDKSIEDGSFDTLFNRHFENELAELALDKRQKITLVNTLLPASAPIHTTKYWYNNNQGK
>NZ_CP013187.1|WP_058030539.1|2668261_2671990_-|translocation/assembly-module-TamB-domain-containing-protein
MRLHPITKRVLNIGLGTLVFLFCLVFTSVGHQSLLWVLNKSVDGLNIKLDQGRLFAGERLDITWRSEGLNLSLSNFRPQLNWFTCATVCVEITADSVDVKLANSSTNKTTEETVAETKTEQSEESQGVFTLPVNVAIAKLNVANIKFQQGDLRVQISDIKSSAQLIDAAARLHDTSIKRIHIIDKREKEQESQALTELAALPAIVLPDGLDVRVSQLALRSFEYETPAGSQRIKHFNIEANITSQQLEWQNLYLEYQQFVLRSFGELKAEAIKQPLASIKSITTLTTEEELVRLHLNGSFSELNIDLKAEGQYQAAVFGNLNLKQTNWPFDVSAHVYNLPFSYKIRGQEYDALMEQAQVELKGNADDYKLKLDVIADQKELTELSAKVSGRGGLTAISEFAGRLNASEGGANLTGKLAWSEGVDVQFHLVMDALPLFFIDQQSVLSGSMSVLAKQQTEGWQIDIPDVDVDGKLSDLPLALDASFRLNEQLFGQVDKLKMQLGSSNLQLSGSLQQELDLSGRFAIAHNNRSQKANALLPFDVDAQGELQIKGDHHQPKVSFSSVISKFENNDISLKGGKLGASVDLANNWQTKTLLSIEQLSVPEHQLNNIELRFTGDQTAHRAQLSSRGDVHAELDILGGLNAQIWQGEIVSGQIAYKQFETSLKHHSKLKYASALQWQTGKLCGELNKSPWCLQAEQKGKQGQFDMDIQGFELASLQAFLPVQLKLNGKTSLNSALSWHDKKLSGLNAKASLQNVAIAHSEADTDANVPIEHVEINLSGDGQAILSRWQLDSSLLGNVSGEVAAKVQDNQLHSPTAKIELHALALNPIGQLANRFLPQPINLDGQLSSKLAFSGDLKQPNVVGEINVTSFGIEQSAMPVSFVDSSLKLDLNGQTARLNGALNTNEDGVLNLTGSLDWQDKLNAQIDVSGEQVQINPQKDMRFTVSPELSVKYQDAHLSLGGRVDIPQGRIKISQLPEQVVSVSDDQVIIDMQTQEQSSLPFTYTLDLDVALQDDFRVYAFGLDSYVFGQISLDKTPDTPLLASGEFELREGVYQALGQDLLIQQGQIGFNGPLSRPYLNVKAIRNPEVTADDVTAGVELTGSASNPSLNIFSQPAMDQAHALSYLLNGEPLDKSENNNNALLSQMLLAQSINFSESFINKAGKKIGIEDVSVSAKGSGDDTQVELSGYITPSVQVSYRVGVFEAMNEIAIRYRVFSKLYIEATSGLYDSIDLLYQFDWGSE
>NZ_CP013187.1|WP_058031627.1|2671989_2673726_-|outer-membrane-protein-assembly-factor
MGGKYLKLFAIVVICWCLTFSLSTQAEAQWQVEAIEFGEMPDELSKNINGTLKPLLNQPFSQSLENKLLSQTERALQALGYYHANITLSRVEQSSTLKIEAEIGEPIRWKSIQIEIKGEANKDSFLQKVLSSIPIKANDIVNHDNYEQTKSVLESSLISKGYFDFKWLTHRLEIHKQKNFAVAKLKLDSGNRYRFGKVEVSRQSLAKKYIQSLAPFDENTLYDENLLSEYNLALNKTPYFSAIKVYPQLQNRKNNLVPIRIEVVDKPANTFEVGGGFSTEIGAKARFKWSKPWITEDGHFFDGNLFVAEKQQRVTGSYSIPVSNPNDDLWRVTTGYALEDELTEGVNSKIWNVQLQRQWLTSNNWVRTAFLKREHETTTQAGITDKTEMLIPGISYAKKQAVGGVTPSWGQQTLISLEFASDDLISSTTLFKAQWEQAWLRKFALKHWFIARLDAGAIVTDDINEVPFNLRFFAGGDQSIRGFAYQSVAPYEEGKIVGGKYLATASVEYNYQFMPNWRLALFVDSGTATNDFSESWAVGAGFGFRYITPVGPIRLDHAWGLSKESKSTRLSIIIGPEI
>NZ_CP013187.1|WP_058030540.1|2673849_2674182_+|ribonuclease-E-inhibitor-RraB
MQFPDDDNGQLLAEMAAEGINLNQMHMVDFFILFEQKDQAESFAKAISEDELAPKTELQKCKDTGVWEVVTTVEMVPEHQLLSQTEQYLESIANSHEGYGDGWGIMADTE

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Crispr_ID: NZ_CP013187_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013187_6

2675283-2675382

Orphan

Consensus_repeat	Method
TACCAGCTGAGCTATACTCGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013187_6

>merge|NZ_CP013187|6|2675283-2675382|CRISPRCasFinder
TACCAGCTGAGCTATACTCGCATTCCATGTTGCTTTTTAATTCAACTAAAAAAAACTAAGGTCGCGCCTTTACGTTTTACCAGCTGAGTTATACTCGCAT

>NZ_CP013187|6|6|2675283-2675382|CRISPRCasFinder
TACCAGCTGAGCTATACTCGCAT	TCCATGTTGCTTTTTAATTCAACTAAAAAAAACTAAGGTCGCGCCTTTACGTTT
TACCAGCTGAGTTATACTCGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013187.1\|WP_058030535.1\|2663774_2664038_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372557
NZ_CP013187.1\|WP_058030545.1\|2680469_2682809_+\|carbohydrate-binding-family-9-domain-containing-protein	unknown	unknown	gnl\|CDD\|187676
NZ_CP013187.1\|WP_058031625.1\|2664887_2665427_-\|SecY-interacting-protein	unknown	unknown	gnl\|CDD\|319993
NZ_CP013187.1\|WP_058030548.1\|2685050_2685905_+\|Tim44-domain-containing-protein	unknown	unknown	gnl\|CDD\|226830
NZ_CP013187.1\|WP_058031627.1\|2671989_2673726_-\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_CP013187.1\|WP_058030543.1\|2678274_2678925_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NZ_CP013187.1\|WP_058030534.1\|2662872_2663529_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224361
NZ_CP013187.1\|WP_058030538.1\|2667434_2668265_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP013187.1\|WP_058030536.1\|2664040_2664814_+\|Zn-ribbon-containing-protein	unknown	unknown	gnl\|CDD\|370804
NZ_CP013187.1\|WP_058030550.1\|2686400_2688788_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP013187.1\|WP_058030547.1\|2684039_2684927_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP013187.1\|WP_058030540.1\|2673849_2674182_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|377727
NZ_CP013187.1\|WP_058030542.1\|2676441_2678265_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP013187.1\|WP_058030537.1\|2665487_2666333_+\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NZ_CP013187.1\|WP_058030539.1\|2668261_2671990_-\|translocation/assembly-module-TamB-domain-containing-protein	unknown	unknown	gnl\|CDD\|225463
NZ_CP013187.1\|WP_058030549.1\|2686101_2686398_-\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|178961
NZ_CP013187.1\|WP_058030541.1\|2675854_2676400_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP013187.1\|WP_058030546.1\|2682950_2683919_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273465
NZ_CP013187.1\|WP_058030544.1\|2679110_2680259_-\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP013187.1\|WP_083496578.1\|2666542_2667430_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|365914

Protein	Function_ID	Function_description	E-value
NZ_CP013187.1\|WP_058030535.1\|2663774_2664038_+\|hypothetical-protein	gnl\|CDD\|372557	pfam13314, DUF4083, Domain of unknown function (DUF4083). This is a family of very short, approximately 60 residue, proteins from Firmicutes, that are all putatively annotated as being MutT/Nudix. However, the characteristic Nudix motif of GX(5)EX(7)REUXEE is absent.	0.00842759
NZ_CP013187.1\|WP_058030545.1\|2680469_2682809_+\|carbohydrate-binding-family-9-domain-containing-protein	gnl\|CDD\|187676	cd09618, CBM9_like_2, DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized subfamily are typically found at the N-terminus of longer proteins that lack additional annotation with domain footprints.	3.70962e-53
NZ_CP013187.1\|WP_058031625.1\|2664887_2665427_-\|SecY-interacting-protein	gnl\|CDD\|319993	cd16323, Syd, Syd, a SecY-interacting protein. This family contains the Syd protein that has been implicated in the Sec-dependent transport of polypeptides across the inner membrane in bacteria. Syd has been shown to bind the SecY subunit of membrane-embedded SecYEG heterotrimer (also known as core translocon or SecY complex) which is a conserved protein-conducting channel essential for the biogenesis of most of the secretory and integral membrane proteins. The SecY-binding site of Syd is a conserved concave and electronegative groove that forms interactions with the electropositive loops of the SecY subunit. Syd is also known to verify the proper assembly of the SecY complex in the membrane by interfering with protein translocation only when the channel displays abnormal SecY-SecE associations. Operon analysis has shown that Syd protein may function as immunity protein in bacterial toxin systems.	2.03802e-78
NZ_CP013187.1\|WP_058030548.1\|2685050_2685905_+\|Tim44-domain-containing-protein	gnl\|CDD\|226830	COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown].	5.85836e-29
NZ_CP013187.1\|WP_058031627.1\|2671989_2673726_-\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	2.40322e-104
NZ_CP013187.1\|WP_058030543.1\|2678274_2678925_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	2.96356e-151
NZ_CP013187.1\|WP_058030534.1\|2662872_2663529_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224361	COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only].	0.00246608
NZ_CP013187.1\|WP_058030538.1\|2667434_2668265_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	1.61277e-06
NZ_CP013187.1\|WP_058030536.1\|2664040_2664814_+\|Zn-ribbon-containing-protein	gnl\|CDD\|370804	pfam10071, DUF2310, Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310). Members of this family of proteobacterial zinc ribbon proteins are thought to bind to nucleic acids, however their exact function has not as yet been defined.	6.42746e-153
NZ_CP013187.1\|WP_058030550.1\|2686400_2688788_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP013187.1\|WP_058030547.1\|2684039_2684927_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.95256e-14
NZ_CP013187.1\|WP_058030540.1\|2673849_2674182_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|377727	pfam06877, RraB, Regulator of ribonuclease activity B. This family of proteins regulate mRNA abundance by binding to RNaseE and inhibiting its endonucleolytic activity. A subset of these proteins are predicted to function as immunity proteins.	6.16351e-20
NZ_CP013187.1\|WP_058030542.1\|2676441_2678265_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP013187.1\|WP_058030537.1\|2665487_2666333_+\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	0
NZ_CP013187.1\|WP_058030539.1\|2668261_2671990_-\|translocation/assembly-module-TamB-domain-containing-protein	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	3.6303e-124
NZ_CP013187.1\|WP_058030549.1\|2686101_2686398_-\|integration-host-factor-subunit-alpha	gnl\|CDD\|178961	PRK00285, ihfA, integration host factor subunit alpha; Reviewed.	1.81699e-61
NZ_CP013187.1\|WP_058030541.1\|2675854_2676400_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	6.98915e-65
NZ_CP013187.1\|WP_058030546.1\|2682950_2683919_+\|cysteine-synthase-A	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	9.72959e-169
NZ_CP013187.1\|WP_058030544.1\|2679110_2680259_-\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	1.98466e-68
NZ_CP013187.1\|WP_083496578.1\|2666542_2667430_-\|peptidylprolyl-isomerase	gnl\|CDD\|365914	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilized in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function.	6.14067e-31

>NZ_CP013187.1|WP_058030540.1|2673849_2674182_+|ribonuclease-E-inhibitor-RraB
MQFPDDDNGQLLAEMAAEGINLNQMHMVDFFILFEQKDQAESFAKAISEDELAPKTELQKCKDTGVWEVVTTVEMVPEHQLLSQTEQYLESIANSHEGYGDGWGIMADTE
>NZ_CP013187.1|WP_058031627.1|2671989_2673726_-|outer-membrane-protein-assembly-factor
MGGKYLKLFAIVVICWCLTFSLSTQAEAQWQVEAIEFGEMPDELSKNINGTLKPLLNQPFSQSLENKLLSQTERALQALGYYHANITLSRVEQSSTLKIEAEIGEPIRWKSIQIEIKGEANKDSFLQKVLSSIPIKANDIVNHDNYEQTKSVLESSLISKGYFDFKWLTHRLEIHKQKNFAVAKLKLDSGNRYRFGKVEVSRQSLAKKYIQSLAPFDENTLYDENLLSEYNLALNKTPYFSAIKVYPQLQNRKNNLVPIRIEVVDKPANTFEVGGGFSTEIGAKARFKWSKPWITEDGHFFDGNLFVAEKQQRVTGSYSIPVSNPNDDLWRVTTGYALEDELTEGVNSKIWNVQLQRQWLTSNNWVRTAFLKREHETTTQAGITDKTEMLIPGISYAKKQAVGGVTPSWGQQTLISLEFASDDLISSTTLFKAQWEQAWLRKFALKHWFIARLDAGAIVTDDINEVPFNLRFFAGGDQSIRGFAYQSVAPYEEGKIVGGKYLATASVEYNYQFMPNWRLALFVDSGTATNDFSESWAVGAGFGFRYITPVGPIRLDHAWGLSKESKSTRLSIIIGPEI
>NZ_CP013187.1|WP_058030539.1|2668261_2671990_-|translocation/assembly-module-TamB-domain-containing-protein
MRLHPITKRVLNIGLGTLVFLFCLVFTSVGHQSLLWVLNKSVDGLNIKLDQGRLFAGERLDITWRSEGLNLSLSNFRPQLNWFTCATVCVEITADSVDVKLANSSTNKTTEETVAETKTEQSEESQGVFTLPVNVAIAKLNVANIKFQQGDLRVQISDIKSSAQLIDAAARLHDTSIKRIHIIDKREKEQESQALTELAALPAIVLPDGLDVRVSQLALRSFEYETPAGSQRIKHFNIEANITSQQLEWQNLYLEYQQFVLRSFGELKAEAIKQPLASIKSITTLTTEEELVRLHLNGSFSELNIDLKAEGQYQAAVFGNLNLKQTNWPFDVSAHVYNLPFSYKIRGQEYDALMEQAQVELKGNADDYKLKLDVIADQKELTELSAKVSGRGGLTAISEFAGRLNASEGGANLTGKLAWSEGVDVQFHLVMDALPLFFIDQQSVLSGSMSVLAKQQTEGWQIDIPDVDVDGKLSDLPLALDASFRLNEQLFGQVDKLKMQLGSSNLQLSGSLQQELDLSGRFAIAHNNRSQKANALLPFDVDAQGELQIKGDHHQPKVSFSSVISKFENNDISLKGGKLGASVDLANNWQTKTLLSIEQLSVPEHQLNNIELRFTGDQTAHRAQLSSRGDVHAELDILGGLNAQIWQGEIVSGQIAYKQFETSLKHHSKLKYASALQWQTGKLCGELNKSPWCLQAEQKGKQGQFDMDIQGFELASLQAFLPVQLKLNGKTSLNSALSWHDKKLSGLNAKASLQNVAIAHSEADTDANVPIEHVEINLSGDGQAILSRWQLDSSLLGNVSGEVAAKVQDNQLHSPTAKIELHALALNPIGQLANRFLPQPINLDGQLSSKLAFSGDLKQPNVVGEINVTSFGIEQSAMPVSFVDSSLKLDLNGQTARLNGALNTNEDGVLNLTGSLDWQDKLNAQIDVSGEQVQINPQKDMRFTVSPELSVKYQDAHLSLGGRVDIPQGRIKISQLPEQVVSVSDDQVIIDMQTQEQSSLPFTYTLDLDVALQDDFRVYAFGLDSYVFGQISLDKTPDTPLLASGEFELREGVYQALGQDLLIQQGQIGFNGPLSRPYLNVKAIRNPEVTADDVTAGVELTGSASNPSLNIFSQPAMDQAHALSYLLNGEPLDKSENNNNALLSQMLLAQSINFSESFINKAGKKIGIEDVSVSAKGSGDDTQVELSGYITPSVQVSYRVGVFEAMNEIAIRYRVFSKLYIEATSGLYDSIDLLYQFDWGSE
>NZ_CP013187.1|WP_058030538.1|2667434_2668265_-|transporter-substrate-binding-domain-containing-protein
MKSWIIALCLNACFCFSACAEQTVRITSGADPYVIALLNHTLSYQNEVHTLDFVKNIPTQNRAIRLLGAENGIDVFWSVTSDEREKQALAVRIPIVKGVLGYRLGVIKKSRLEFFTKLRSDGELKKLRYGLRTDWPDTVIFKDNDFNVLEYSQENSGYDLLEASRIDVLPIDALFANDIANMSDLTIDPAHVFYYPSAVYFFVDKNNKTLYQKLKVGLDKSIEDGSFDTLFNRHFENELAELALDKRQKITLVNTLLPASAPIHTTKYWYNNNQGK
>NZ_CP013187.1|WP_083496578.1|2666542_2667430_-|peptidylprolyl-isomerase
MLLRAFGLTACVLLAGCSSTQNTESVPIKPEVRSPSTIISSASADVWQQVNNDDVLRIDLPTGRVYVHLNPELAPGHVDNIKKLAREGFYDGLNVYRFVESFVAQGGDQSGEKQPTQGSKGIAGEMFLTTETSLEITPLNALDGYADKTGFLNGFAVAQNSDGKKTWMTHCTGTFAMARGNEIDSGGTEFYITLAPQRYLDKNTTVFGRVLEGMEHAQRLMRTPVEGQPFNLISQVRVLSDISGEDNSAFTVFDTSSEDFKELIESRKNRPSEWFVDKPNHTDVCSVSIPTKRLN
>NZ_CP013187.1|WP_058030537.1|2665487_2666333_+|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MTDYNNAPELKESVLGKTTEYASQYDASLLFPIARKLNRDQIAVDEQNLPFKGEDTWTGYELSWLNSKGKPQVAVAAFVFPCQSSHIIESKSFKLYLNSFNQTKFASFDEVQTILTNDLSKAAQTDVEVTLFKAEDYACIPFTAMPGECIDELDIEVDTYSPQEGLIVVKDGNEVTETLHSHLLKSNCLITSQPDWASIVISYTGKPVCKESLLKYLISFRDHNEFHEQCVERIYCDLMRELNPSKLEVYARYTRRGGLDINPYRSSESDKTAYHIRTNRQ
>NZ_CP013187.1|WP_058031625.1|2664887_2665427_-|SecY-interacting-protein
MTIKPLLSELHDKFKSHYQQQHGTLPCMYHDADWPSPCEVGEVLSEQQIQWQAVPQPAKNSLNDLANALECGFPDALNEFYSSFYAGNIIGKVEGHQIELLQAWNEDDFVRLQQNITGHVLMKRKLKHADTVFIGLTEQDDLLITVELETSKVWLEYVGKRPHHVLSDSLEAFLQSIEF
>NZ_CP013187.1|WP_058030536.1|2664040_2664814_+|Zn-ribbon-containing-protein
MFVVDLTFDCYQDTTLDDAERAINRVVNALRFNGQIIGDEFPTVLKDGYFITRVMCPLEDALHPLNHSPFVKKAIELLQEAGLLAPKVKVIGQDIHANGADLCDAPSSYILYTTYVHTCSPLYCGDDFQPVPLYKIPAIANGDYKALIKWQEDWQACDQIQINGATRCEFAALEEISSTESDLFRRGMDLSKRIRFLTKKPVYYYLYRVGGESLEAEQARKCPSCGGDWKLDEPWFGLFDFRCDSCELVSNISWDFQ
>NZ_CP013187.1|WP_058030535.1|2663774_2664038_+|hypothetical-protein
MHPAVHSAIAALVAENKTPTVALTKSKLSEPVPMPLVIAGLTAYKNDPNCINTQPAATPKVKATEQSQLDRIEQKLDRLLALLEKDN
>NZ_CP013187.1|WP_058030534.1|2662872_2663529_-|GNAT-family-N-acetyltransferase
MKIVEADQLSLKYLEPEEINIAASLLFQAYQSDELLKQVLSADSDDDFAKKLRALIREELQTFSQSGQAMLGAFIDEQLVGVACAIATNGPLSAQRFWHWRLKLMLSAGYVQTKQLVAKEQAIRAALEQYGECFYLSLIAIHPNVQGQGLGHYLLNGVEQLHLAEEEITGVAVFITQTAQKAFFLKHQYEVIEQMTFGEVSGELMYKKLDADGSENSL
>NZ_CP013187.1|WP_058030541.1|2675854_2676400_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MWNIPNTLTTFRLLLIPVFAVVFYLPYSWAFFAAAFIFWLASVTDILDGYLARKLDQSTPFGAFLDPVADKVMVSVALVVLATHYQNIFITLAALIIISREIVISALREWMAEQGKRGNVAVSNMGKFKTAAQMLAIIGLIWQYAPWMTMLSYALLAIATLLTVTSMLAYLNAAKSELIKS
>NZ_CP013187.1|WP_058030542.1|2676441_2678265_-|excinuclease-ABC-subunit-UvrC
MAVFDSKAFLKTLSTEPGVYRMYDAQHQVIYVGKAKNLKKRVSSYFRSNIPDAKTRVLVSNIANIEVTLTNTETEALLLENNLIKQYQPRYNILLRDDKSYPYIFLSGHKHPRLAFHRGSRKQKGDYFGPYPSSAAVSESLRLMQKIFPVRQCEDAYYRARSRPCLQYQLKRCAAPCVGKVSDDEYKEQVDLVKQFLSGKSHQVIAALVEKMEQASMALNFELAAKVRDQIAILRQMQEQQFVAGNLGEIDIIGFQQQNGICAIHLLMVRDHKVLGSKTYFPKVPKDSQQDEIVTSFIGQYYVGAGTQRQIPKEIVLPFELQEQNELINALSQLADKKVELKASVRSERAQYLALANKNALNSIVVKQNAQDSITKRYALLKEALQLSDINRMECFDISHTMGENTIASCVVFDGSGPNNKEYRRYNVTGITPGDDYAAMAFALNKRYGKLKDEEKIPDVIFIDGGKGQLNKAEAFFEDWPHSKMPLLVGVAKGTSRKPGLETLLIDGGRRTVNLDSDSPALHLIQHIRDESHRFAIAGHRNKRQKQRTQSLLEEIEGVGQKRRQALLKYLGGMQGVKSATIAQLNQVPGISQDMAEKIFNHLHDKA
>NZ_CP013187.1|WP_058030543.1|2678274_2678925_-|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MINVLLVDDHELVRTGIKRILDDVRGFKVIGEAKTGEEAVKFCRDNNPDIVLMDMNMPGIGGLEATKKICRYNPDIKVIVLTVHCEDPFPSKVMQVGAQGYLTKGTGSDEMINAIRAVNSGQRYIAPEIAQQIALAQFSGRNDENPFQSLSERELQIMLMITKGEKAQDIADRLNLSSKTVNSYRYRMFEKLNVGGDVELTHLAIRHKMIDIDTSN
>NZ_CP013187.1|WP_058030544.1|2679110_2680259_-|dicarboxylate/amino-acid:cation-symporter
MSLILKLLAGIAAGIVVGSYLPLPLVELLYTFKVIVGQLISFTIPLIILFFIASGIAGLPKEAGHLLGKTVGFAYGSTILAGTLAFLLVNAFVPFFEGTTTYQAVQGTELKSFINIEIPPLMGVMTALAAAFIFGIGISQLALKDLQNVVDQGRDVIDALLAKVIIPALPFYIAGVFAEMAVAGTVADTLSTFGIVLVAAVVMHWLWLSVLFIGSGILLKRSPIELVKNMLPAYFTAIGTMSSAATIPVSLRASKANGVKEEVANFSVPLCATIHLSGSTITIVTCAMAVMLLSPEMSMPSITSILPFILMLGVVMIAAPGAPGGAVMSALGLLTSMLGFSEGAVALMIALYLAQDSFGTACNVTGDGVIALWVNKFSEQGK
>NZ_CP013187.1|WP_058030545.1|2680469_2682809_+|carbohydrate-binding-family-9-domain-containing-protein
MLKTSLSTIFAALLAASSQSFASESLPFINATAEIDGKLDEAVWQQAKKITINNVTWPQENIKSPIETTAYVFENGTSLFIAFDAKDPNPELIRAFYRDRDSAWNDDLVGIKIDSFNNSLSAYQLFINPLGVQQDSIENELTKSENSSWNGIWDSAGTIHEGGYYVEVEIPLRVLNFDDSIDTKTMAMEFLRFYPRDQRLRISSMQIEHANNCWICQMPEYTGFEQAKQGNNFALIPSLVASKQQTRDIDGNETGEWIDEDNVEPSLDVKWAITPDMTLNATLNPDFSQVEADTGQLSVNNSFSLFFPEKRAFFLDNSDYFSSHLNLIHTRNIAAPDYGVKFTSNKQGHTVGAFIANDEKLNVMIPGNLGSRVVSFDQKSENLALRYRYDFNNVLSVGTTTTVRQSNDYSNQVISLDSKYKLTNNDIFKAQVLFSDTDYTQAFVDELCNGEQGDCQKPSQPECEESSDCDLNESTLRVLNEVDTKGMGYLLNYEHNEKHWRAFTSYQYRDRGLRSDLGFMSQIDFNKFLAGYEYRWYGDENTWWNRANWYTDWDITHNDNNELLEKEVQTNFSINGPLQSHINTGVEHRKRTGLRHNEASLAIDGNTDLFTENNLWTYMEMKPVSGVFTSLNISTGNKVDLANNRLGEQFRVRPVINLNLGKHFELRFRHTYQTLEADGADVFTANLTDVRMTYQFNLNSYLRLAVIKTDIERNPSNYIDSVDATYKGLSTQLLYSYKLNPQTVFFAGFSDSGYQDDELEEITKDSKTFFMKFSYAWLM
>NZ_CP013187.1|WP_058030546.1|2682950_2683919_+|cysteine-synthase-A
MSKIFADNSLTIGNTPIVKLNRVTGGNVFAKVEARNPSFSVKCRIGASMIWEAEKAGTLTEGKEIIEPTSGNTGIALAFVAASRGYKLTLTMPNTMSLERRKLLKALGANLVLTEGAKGMKGAIEKANEILASDPEKYVLLQQFENPANPKIHFETTGPEIFEAMEGKVDFFVAGVGTGGTISGTTRYLKQEKGLDVKAIAVEPVDSPVITQTLAGEEVKPGPHKIQGIGAGFIPDNLDLELIDGTELVSNEDAIEMAHQLMRDEGILVGISSGAAVVAAKRLAEKPENADKNIVVILPSATERYLSSPLFADQFSDQELVQ
>NZ_CP013187.1|WP_058030547.1|2684039_2684927_+|transporter-substrate-binding-domain-containing-protein
MRLFIFIIVLFSSSTFASMNVGYFKDNIYQVVQGKTYKNGLLFNANDSKPVHIVTLDWPPYIGSQLCNKGWVFQFTVALLVEQGYSVYIEFLPWARAVRATELGKADILMPEYYIEDSAPSDTVEGKTRRELLALSNPFPGGEIGFLKRKGDADRFTGNLLSLKGQKIGVVRGYQNTPEFDAMMDNDEFTIIEAVDDLQLVKLLVGKRVDLIIGDPKVLKFTVSYSELPRPEKATLLRNIERETHSLQYNNLYFALSKRSPNWRTLLGDINKSLYQFNNSGETDRIVDMGITECY
>NZ_CP013187.1|WP_058030548.1|2685050_2685905_+|Tim44-domain-containing-protein
MKNFLVIFSLISLLFATSFDAEARKKFGKKKSGKTHSTSTTQQKQQVDTKSLPAKTAGKSSKKGIMAGVLGGLLAGGLIAAMMGDDFEGFQFLEMILLAIAAFVIFKLIKGMMAKRQQPQMAGGPQFGQQQQFQQQPQQFQAQQPMQSSGGFGQQNDVPFNLPKDFDVNGFLQGARDHYHTVQKAWNDKDYNKMAEYLSPALVEEFKAEREQHDSVATEVIFVDAQLVRADTHPHVWEVSIMFKGKYRDLGDNQEEPIHEIWHLERQTQGEAPWLIVGVEDLID
>NZ_CP013187.1|WP_058030549.1|2686101_2686398_-|integration-host-factor-subunit-alpha
MALTKADIAEHLFEKLGMNKKDAKDIVEAFFEEIRSALEKGEQVKLSGFGNFDLRDKKERPGRNPKTGEDIPISARRVVTFRPGQKLKTRVEVGTSKE
>NZ_CP013187.1|WP_058030550.1|2686400_2688788_-|phenylalanine--tRNA-ligase-subunit-beta
MKFSEKWLREWVNPAIDTEALSEQLSMAGLEVDGVDAVAGDFSGVVIGEVVECGQHPDADKLRVTKINVGEDELLDIVCGAANCRQGLKVAVAKVGAVLPGDFKIKKAKLRGQPSHGMLCAFEELGMAESSDGILELPADAPIGQCIREYFNLDDVTIDVDLTANRSDCLGIKGLAREVGVLNSQDVTEVAIAAVEPTIEDTINIELVNSQACPRYLGRIIKGINLEATTPLWMVEKLRRSGVRSIDPVVDVTNYVLLELGHPMHAFDLAAIEGGIKVRNANENEELVLLDGNTAKLNPSTLLIADNNKALAMAGIFGGEGSGVKEGTQDILLESAFFAPLAIAGQARSYGLHTDASHRYERGVDPKLQRDAMERATALLLEIVGGEAGPVVEAVSEADLPVEKSVTLRRERLDRVIGYHIEDAKVTDILTRLGLTVEFTNDTWNAQVPSYRFDISIEEDLIEEVARVFGYNNIPNVAPTAALKMTTHQEAKLPVAKFRNELVARGYQEAITYSFVDPKVQQQLHPQSDALVLPHPISIEMSAMRVSLMTGLINTVVYNQNRQQSRLRFFEHGLKFLKDETAENGVSQIAVLGGIIYGNTHNEHWSIESKPVDFFDAKGDVEALIALTNDVSRFSFKAEANDGLHPGQSAAIYLDDKKVGFIGAVHPQLQKSLGLNNAAFVFEIEADALVARKLPEAVSVSKFPSNRRDIAILVADDVKIGDILNSIEKVGGNQLVDLNLFDVYKGKGIEPGFKSLAIALTLQAVDKTLEENDINTLVENVVAELANKFNASLRD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013187_1	1.1\|39975\|35\|NZ_CP013187\|CRISPRCasFinder	39975-40009	35	NZ_CP013187.1	3514334-3514368	2	0.943

1. spacer 1.1|39975|35|NZ_CP013187|CRISPRCasFinder matches to position: 3514334-3514368, mismatch: 2, identity: 0.943

caccttgcgcgaaaagaatgcaagcgctacgcgct	CRISPR spacer
caccttgcacgaaaagaatgtaagcgctacgcgct	Protospacer
********.***********.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1777274 : 1790722

Powai_lake_megavirus(12.5%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058029736.1\|1777274_1778672_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	8.7e-85	37.0
WP_058029737.1\|1778902_1779337_+	ATP-binding protein	A0A291LB58	Pseudomonas_phage	4.9e-10	31.2
WP_058029738.1\|1779427_1780549_-	alanine dehydrogenase	NA	NA	NA	NA
WP_058029739.1\|1780693_1781173_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_058029740.1\|1781331_1783935_+	DNA translocase FtsK 4TM domain-containing protein	A0A218M9A2	Mycobacterium_phage	1.6e-87	49.3
WP_083496638.1\|1783938_1784568_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_058029742.1\|1784573_1785911_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.9e-76	39.5
WP_058029743.1\|1785903_1786284_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.4e-08	37.6
WP_058029744.1\|1786291_1787593_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.4e-91	50.9
WP_058029745.1\|1788092_1788263_+	ribosome modulation factor	NA	NA	NA	NA
WP_058029746.1\|1788337_1788853_-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA	NA	NA	NA	NA
WP_058029747.1\|1789053_1789911_+	6-carboxytetrahydropterin synthase	I6W6Z1	Vibriophage	1.4e-13	25.1
WP_058029748.1\|1789903_1790722_+	M23 family metallopeptidase	A0A2R3ZZL7	Microbacterium_phage	1.9e-07	33.7

DBSCAN-SWA_2

3278668 : 3286274

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058031021.1\|3278668_3279715_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.4e-116	62.8
WP_058031022.1\|3279781_3280273_-	CinA family protein	B5TK85	Pseudomonas_phage	6.3e-22	43.6
WP_058031023.1\|3280295_3282887_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	3.7e-36	25.7
WP_058031024.1\|3282951_3283935_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	3.5e-32	35.4
WP_058031025.1\|3283993_3284815_-	peptidoglycan DD-metalloendopeptidase family protein	G3MBP9	Bacillus_virus	4.3e-07	39.1
WP_058031026.1\|3284882_3285524_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	7.6e-36	49.4
WP_058031027.1\|3285524_3286274_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.2e-71	54.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013188

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013188_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013188_1

54750-54868

Orphan

Consensus_repeat	Method
AGATCATATTTTTACTAACTTAAT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013188_1

>merge|NZ_CP013188|1|54750-54868|PILER-CR
AGATCATATTTTTACTAACTAAATTTGTTTTTAATTTCTTAATTAAGTCTTCTAGATCATGTTTTTACTAACTTGATGACCTCTTAGTTTTCGAAAGATCATAATTTTACTAACTTACT

>NZ_CP013188|1|1|54750-54868|PILER-CR
AGATCATATTTTTACTAACTAAAT	TTGTTTTTAATTTCTTAATTAAGTCTTCT
AGATCATGTTTTTACTAACTTGAT	GACCTCTTAGTTTTCGAAAGA
TCATAATTTTACTAACTTACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013188.1\|WP_058031724.1\|42661_43387_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP013188.1\|WP_058031737.1\|57080_58361_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP013188.1\|WP_058031729.1\|47915_49130_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NZ_CP013188.1\|WP_058031738.1\|58438_59131_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP013188.1\|WP_058031739.1\|59140_60460_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NZ_CP013188.1\|WP_058031741.1\|61757_62498_-\|5-oxoprolinase-subunit-PxpA	unknown	unknown	gnl\|CDD\|212099
NZ_CP013188.1\|WP_058031734.1\|55180_55747_+\|uracil-DNA-glycosylase-family-protein	unknown	unknown	gnl\|CDD\|381683
NZ_CP013188.1\|WP_058031726.1\|44229_44724_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013188.1\|WP_058031725.1\|43494_44091_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|372595
NZ_CP013188.1\|WP_058031735.1\|55853_56207_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013188.1\|WP_058031727.1\|44727_47160_-\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341067
NZ_CP013188.1\|WP_058031728.1\|47621_47861_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013188.1\|WP_058031736.1\|56332_56905_+\|elongation-factor-P-like-protein-YeiP	unknown	unknown	gnl\|CDD\|179863
NZ_CP013188.1\|WP_128724662.1\|62509_64222_-\|glycosyl-hydrolase-family-3	unknown	unknown	gnl\|CDD\|366376
NZ_CP013188.1\|WP_058031731.1\|52784_53453_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369778
NZ_CP013188.1\|WP_058031733.1\|53991_54444_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_CP013188.1\|WP_058031740.1\|60469_61678_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|274576
NZ_CP013188.1\|WP_058031742.1\|64657_65608_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP013188.1\|WP_058031730.1\|49126_52783_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|182330
NZ_CP013188.1\|WP_058031732.1\|53455_53995_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013188.1\|WP_058031724.1\|42661_43387_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	2.42346e-133
NZ_CP013188.1\|WP_058031737.1\|57080_58361_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	6.17819e-24
NZ_CP013188.1\|WP_058031729.1\|47915_49130_+\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	1.31606e-78
NZ_CP013188.1\|WP_058031738.1\|58438_59131_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	3.72899e-104
NZ_CP013188.1\|WP_058031739.1\|59140_60460_+\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	1.52378e-29
NZ_CP013188.1\|WP_058031734.1\|55180_55747_+\|uracil-DNA-glycosylase-family-protein	gnl\|CDD\|381683	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil may arise from mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations; thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other. UDG family 1 is the most efficient uracil-DNA glycosylase (UDG, also known as UNG) and shows a specificity for uracil in DNA. UDG family 2 includes thymine DNA glycosylase which removes uracil and thymine from G:U and G:T mismatches, and mismatch-specific uracil DNA glycosylase (MUG) which in Escherichia coli is highly specific to G:U mismatches but also repairs G:T mismatches at high enzyme concentration. UDG family 3 includes Human SMUG1 which can remove uracil and its oxidized pyrimidine derivatives from, single-stranded DNA and double-stranded DNA with a preference for single-stranded DNA. Pedobacter heparinus SMUG2, which is UDG family 3 SMUG1-like, displays catalytic activities towards DNA containing uracil or hypoxanthine/xanthine. UDG family 4 includes Thermotoga maritima TTUDGA, a robust UDG which like family 1, acts on double-stranded and single-stranded uracil-containing DNA. UDG family 5 (UDGb) includes Thermus thermophilus HB8 TTUDGB which acts on double-stranded uracil-containing DNA; it is a hypoxanthine DNA glycosylase acting on double-stranded hypoxanthine-containing DNA except for the C/I base pair, as well as a xanthine DNA glycosylase which acts on both double-stranded and single-stranded xanthine-containing DNA. UDG family 6 hypoxanthine-DNA glycosylase lacks any detectable UDG activity; it excises hypoxanthine. Other UDG families include one represented by Bradyrhizobium diazoefficiens Blr0248 which prefers single-stranded DNA and removes uracil, 5-hydroxymethyl-uracil or xanthine from it.	3.53024e-93
NZ_CP013188.1\|WP_058031741.1\|61757_62498_-\|5-oxoprolinase-subunit-PxpA	gnl\|CDD\|212099	cd10787, LamB_YcsF_like, LamB/YcsF family of lactam utilization protein. The LamB/YbgL family includes the Aspergillus nidulans protein LamB, and its homologs from all three kingdoms of life. The lamb gene locates at the lam locus of Aspergillus nidulans, consisting of two divergently transcribed genes, lamA and lamB, needed for the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression. Although the exact molecular function of LamB is unknown, it might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.	3.95667e-129
NZ_CP013188.1\|WP_058031727.1\|44727_47160_-\|M1-family-metallopeptidase	gnl\|CDD\|341067	cd09604, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains bacterial M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	3.49117e-135
NZ_CP013188.1\|WP_058031725.1\|43494_44091_-\|HAD-IA-family-hydrolase	gnl\|CDD\|372595	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.	5.89215e-26
NZ_CP013188.1\|WP_058031736.1\|56332_56905_+\|elongation-factor-P-like-protein-YeiP	gnl\|CDD\|179863	PRK04542, PRK04542, elongation factor P; Provisional.	9.45625e-119
NZ_CP013188.1\|WP_128724662.1\|62509_64222_-\|glycosyl-hydrolase-family-3	gnl\|CDD\|366376	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain.	1.66492e-87
NZ_CP013188.1\|WP_058031731.1\|52784_53453_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.24506e-11
NZ_CP013188.1\|WP_058031733.1\|53991_54444_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	2.32733e-66
NZ_CP013188.1\|WP_058031740.1\|60469_61678_+\|FtsX-like-permease-family-protein	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	2.63814e-25
NZ_CP013188.1\|WP_058031742.1\|64657_65608_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.20812e-81
NZ_CP013188.1\|WP_058031730.1\|49126_52783_+\|AAA-family-ATPase	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	1.24607e-83

>NZ_CP013188.1|WP_058031733.1|53991_54444_-|YaiI/YqxD-family-protein
MHIWVDADACPAVIKEILFRAAERTKTHTTLVANHSMRVPVTQYVNLLQVSKGFDIADNEIVKRVKKNDLVITSDIPLAAEVLEEGAFALSPRGEKFTENNIKQILNMRDFMDTMRSSGVEMSGGPAKLNSTDKQTFANALDSLLAQHRS
>NZ_CP013188.1|WP_058031732.1|53455_53995_-|hypothetical-protein
MKLLTQGLGAEEGLIAIYVENPPSMSEYHNLQSVQSLSTGEIDIINQACGNGWRKVFNVYAKILAEWQHRDHHFTNFKRWQDYRDKVLLQGHSQEALLFSPPNFSEKNYKFHVIAGRTYAKKLLQDHIFTNSLVWLDEEFAIDKVSNLVICPYLDYRQLSNIKITRLVGLLAELERTST
>NZ_CP013188.1|WP_058031731.1|52784_53453_+|class-I-SAM-dependent-methyltransferase
MPEFKGEQATHYNERITRLVPGYELLHGLTAAQLKVLFPDEATILIVGAGTGKEVIELAKLNSNWSFIAQDISADMLAIADQSFTNMGLSHRVKIQCGELTSLTERADCALCLLVLHFLEDNGEKKTLLNQINSALKPNAPLFLVDLMKPETQFEREAQLVFCRTLGLTEIGQTRMRHNLEHEFYPLDRMRLSELLDECGFNVPHPFFKALGFTGVSCNKRT
>NZ_CP013188.1|WP_058031730.1|49126_52783_+|AAA-family-ATPase
MKLLKIAITNLASITRADIDFEKAPLEQAGLFAITGDTGAGKSTLLDAICLALYAKTARLKNDLKNTVSFNGDDIKLNDPRNLLRRGCAEGSAEVTFLGQDGERYLAKWSVARARKKVSGKLKTHEHEIIRLSDETLLAHKSAAVKAVEQLIGLSFEQFTRTVLLAQHEFAAFLKASSDERAQLLECLTATDKFSRIGQLIFEKHKEKKAELERLKDSLSAYVLLTDEQLEQLTLDANTHKQQLDELRAQQAQYKSSLQWLTESAQLRTQLVQTEQAIQETEAKLTEKGHAYNEAEQAQAAFEIADNRQQWAVTKNNLSTLELKQSELKTKDFTAQIQQAEDISNKASDALQQTEVYVTEQQKVLIEVRQFDTKIANADSVLQQVLKQQSELEQQQTKLSVEQQNTNTNLQQVQQQSNKLESLLTTNSSLQSTVENWSHLKGLLDEIIDKQLQSHSVNVVLQNAQKQHHENIQQAEPLKSGLLQLQSQLELGQSSIDVLQKQIEQLNIDDLQSTTQRLQHVIGLMQNISDISAEQLQHQSAMASNFQKKQAIEVQMADTERQKELSKQRVNVTRDSLTQVQLRASESISALRAELKPGHECMVCGSKEHPYAVDHIDSHWTNLLNDFAMQNQQAEQAYEQAMQRSRTHLAEFEKVNARYQESKLQNQRLVSKISELQGQLEQFIEYQGWSLQQCLDHQQILVQQQQHYSAIQSQLQKAWQLQQEKQKLFEQQQTQLNAITQQETELSHQIEQQQNTLTQLSQGLSRAEQQARGYYADETWWEQFEKAPKDALFSLTKTVDDFKNNREKLAQLQKSQQTLTLQLNHLQESAINVSQQLKEVSNTVEKARSEKLSFEQARFERLPQEISADEWQEKCQTQLKARQHDLNTCSEQLKHILQAEKDKQKDLISLNKQIEILLTQKAALESRFEQWLNEKSQIFADLNEERVTYLLRLSKADIQQTLSEFKQLSHGKVELSGKLSHLKESLHTHLAKALTELTEHQINEQLVILESQFQQTQQSWLGVNTQLEQHHNNVEKLATEQQKLNSFQAKYEHWHLLDKLLGDATGKKLRNIAQTQTLKILLQYANQHLASLSKRYRLAVIGHSLNIAIIDKDMADEQRSVNTLSGGESFLVSLALALGLASLSSNKVNIGSLFIDEGFGTLDPETLSVALDALDALQAQGRKVGVISHVSEMSERVATQVQVKKQPGGYSNVLIKGT
>NZ_CP013188.1|WP_058031729.1|47915_49130_+|exonuclease-subunit-SbcD
MKVLHTSDWHLGQQFYEHHRVQEHQHFLDWLVTTLQQQAIDLLLVSGDIYHTATPPSSAEQQLYQFIKQAKQACPELHIVIIAGNHDSANRIETAKPLLKQFDTHVIGRYDKAAPEACLVNIETGKGKAQVVAMPFLRPADVTLDTQNDKAYQQGVAQAYQSVVELCEENTAPIIVMGHLHAKGGTISEDSERNISIGGFDAVTAEVFTDKADYVALGHLHKAQVVAKCDAKRYCGTPMPMSFSEKNYQHQVLVCEFNGKACVSVNPLYTPRLRELIVLPEKGGADIDTLCNEIEQLDLKSYEASPYLRLRLNASETDSQFREKISLSLKGKDILFCGIERVQDVQKHDDEVIFQDLGQVEKLNPLDLLDMVFKQQVDSEQTLPENLADCLAEVLSAMEEEQNA
>NZ_CP013188.1|WP_058031728.1|47621_47861_+|hypothetical-protein
MDFYILKKQDKLVAIPADEQNCKQYLEDGYFYVDKVAACNEKSALEVLQNKQTKVFKTPVLLFLLALPVVAFIWWQITR
>NZ_CP013188.1|WP_058031727.1|44727_47160_-|M1-family-metallopeptidase
MKKITSALSLCIPLMASSLAVASAVEQTKGNFVDKFRQLDEVLPTPNVYRNAAGEPGERYWQQKVDYDIDVVLDEKQRRLTAEQSIEYKNNSPYTLKYLWMQLDQNIFKQDSLAERSATFKNSLQSNPAAKPAKISLNQLRRQQFMDDTELGFVISDVKDEDGKPLKVTIVDTMMRIDLNEPLKPGKSTEFSLDFAFNIVEEDAVGARSGYEHFEEDGNDIFLLAQWFPRLTAFTDYEAWTNKAFLGRGEFTLEFGDYDVEITVPADHIVSSTGELKNAKKVLTKTQLKRLKEAETAKRPVFVVTEEEAIENEKAGTDKTKTWHFEAENVRDFAWASSRKFMWDAKGYQQGGKEQPLVMAMSFFPKEGGDLWKKYSTESVIHTMEVYSRFSFDYPYPVAQSVNGPVGGMEYPMITFNGPRTELRDDGSRTYSQAEKRFLIGVVIHEIGHIYFPMIVNSDERQWTWMDEGLNSFLDGVAGREWDPNIPWGVEPRDIVPYMKSQNQVPIMTQSDSVLNLGPNAYTKPAAALNILREVILGRELFDFAFKEYAQRWKYKRPTPADFFRTMEEASGVDLDWFWRGWFYTTDHVDISLDKVYQLRIDTKNPDIDYARLREFEQSKPMSLFNKRNQEEGKELWIDKNKDVTDFYDDNDRFTVTNKERNAYQSFLKKLKPWERKALDRAVEEDKNYYVMEFSNLGGLVMPIILELTYQDGSTEERMLPAEIWRRSPNKVSKLIITDKDKPLKSIVVDPRWETADVDIENNHYPRQIIPSRLEVYKRKKSSAKVRRDIMHDIKTELKKDDKDEKEKKD
>NZ_CP013188.1|WP_058031726.1|44229_44724_-|hypothetical-protein
MRAWLAASLLLLLSGQVTAHQLKAAMTTVLINERTGNLELMHRFYLHDTEHAVETLIGGHADLFKHAKDRAEFAKYVNRKVALQLADKTPLKLSLVGQEVDGKFFWVYQETQIPADFSALRMQHGALRDVWADQVNMVNFEGKGKVKTLHFDGEDNWLTVHFDK
>NZ_CP013188.1|WP_058031725.1|43494_44091_-|HAD-IA-family-hydrolase
MTQTAVNANYQGVIFDLDNTLVSSSLNFKHIRDEIGCTEHTDLLTYIEQLPEVEAQAAMDIVLSHEYQDAESAVLMPGVVECLAALAEQNIKMAVVTRNCQHAAQLKLAKTGLEFDIVLTRDDAPAKPDPTALLQVADSWQVNPSQCIYVGDFLFDIQAADNAQMDSCLYIIDACPDYADTATYTIEHFSQLTKLVLP
>NZ_CP013188.1|WP_058031724.1|42661_43387_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRAFEVRKNAMAKTAAAKTKVNSKYGKEIYVVAKNGGADPETNLSLRRLIEKAKKDQVPAHVIDKAVEKAAGGAGEDYSPARYEGYGPGNCMVIVDCLTDNPNRTIKDVRLPFTKTDSKIGSPGCVAHMFDHLAILGFDGDDDEVVLEALMMADVDVTDVEVEDGKVSVFAPHTEYFKAKTALTEAFEGINFEVDEITFVPQTHIEITGEDDLANFEKFMTMLEDCDDVQNIYHNAIVNK
>NZ_CP013188.1|WP_058031734.1|55180_55747_+|uracil-DNA-glycosylase-family-protein
MNLIDQITACRLCDEVLPFGARPVIQASPVAKILISGQAPSLKVHQTGKLFNDQSGETLRDWLGVTEAQFYDPDLFAIVPMAFCYPGKGKSGDLAPPKICAQTWQQPLQAYFKQIHLHILVGQYSQRYYCKNYKSVTQQVQQWPSMLPRRIALPHPSPRNQPWRAKNTWFEQELVPRLRTNIQKLIDS
>NZ_CP013188.1|WP_058031735.1|55853_56207_+|hypothetical-protein
MLNKVTGWCAVLLSLMAFYPSNMTGGLSCIGFYISLFAMFIGAYASSFGKYIYFILVFLFSLINIFVINDGTNVFLFSQQNDWVYVLSMYGIFAVVSVVCFGLLRKETLLAQLDAVN
>NZ_CP013188.1|WP_058031736.1|56332_56905_+|elongation-factor-P-like-protein-YeiP
MPKASEIKKHNAIDYNGRVMIVRDIERSVPQGRAGGSLYRMRMYDVVTGGKVDETFKAEEMLNLADLVRRPVMLSYIDGEEHVFMDEEDYTPYNINTSSIAEQVLFINEETKGLQAVLVEGSPVSIDLPSSVELVIEDTSPSIKGASASARTKPATLTTGLIVQVPEHISTGDKIKINTDEKKFMGRADS
>NZ_CP013188.1|WP_058031737.1|57080_58361_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MSYIPDTSAQDSQVVTPKNTKKRVIYAASLFAFLIFCYAFIIPLVEGWVGGKSAISLDKLKLAQVTQGDFIRDFSVQGKVIAARRPVLYSPAQGTVTYLVDAGDRVEMGQALAQVESPELQSLFDQENTQLSRLRTQLAREKIQAKHIQLQQENRIGQARVALNAAKREMRRSEEAKKNQIISDIDFQKAKDDLENALREFEHVNKEVALLKESQQFEIQTYEFEFNAQKVKVAELQRQVLGLEVRSPVAGLVGNLNLEQKNTVSKNQPLMSVVDLSEYEVEVLIPETYADDLALGIEAEINFNEQSFMGNLVAMSPEITKGSVQGKVRFTGTAPDNLRQNQRLTTRLILEQRSQVNYLPRGRFLQNYDGMHIYVLRDNEAVKVPAKLGTKSLSKVEVISGLALGDTVIISDYRVFEKAASVKILQ
>NZ_CP013188.1|WP_058031738.1|58438_59131_+|ABC-transporter-ATP-binding-protein
MLKMTGLAKAYITSDIKTQALQPFDLAIGLGEFVSVIGPSGSGKTTFLNIAGLLENHSNGVYELDGQDVSKMSDKQKSAYRNEKIGFVFQSFNLIPELNLYDNIDMPLRYRKFNAKERDERIMKALEQVGLAGRKNHYPTQLSGGQQQRVAIARAIAGSPSVIFADEPTGNLDSKMAQGIMTLLQDINASGTTIIMVTHDNEQAQLAQRIVQIKDGVLSEESPVLTQAIA
>NZ_CP013188.1|WP_058031739.1|59140_60460_+|ABC-transporter-permease
MFSYYVKLALISLKRTPLLSFLMVMLIAMGIGATMTTYTVNYMMSQDPIPSKSDNLYSVQIDSRGDGVDYSYLDTIPPEMTYQDAMSILKSDIPKYQAVISAIRTTVKNPAKHDTAVTREVRTTSADFFPMLEVPFLYGRGWDETADNNAELVVVLTKQANMRFFGGENSVGQTLQLGEDLYQVVGVLDDWLIVPKFYGQNNAMYSQPFDIFMPFSAQISKEIFTTSLINITCWKPAEDESTAAFLASECSWIKIWAELENDEKKQQFQLFLDNYAQQQQAQGRFANRILNKLVSVKQYLNEEKIVPEDSKIAVSLAALFLIVCLLNCMGLMMAKFHGKAGEAGLRRAVGASRQHLIAQFSVELAVVGFIGGVLGLLLAQLGLVAMTNLYSHLHSSLMQMNALIVVITLALAVVISCIFGLIPILKASRIQLSSQLKSL
>NZ_CP013188.1|WP_058031740.1|60469_61678_+|FtsX-like-permease-family-protein
MRDLAPIIKALFKEKLVPFLLILQIAVTFMVMVNAVNMISEREKLMSRPTGVDEENAFYVLTNLQGPAENYIANLSHDLASLRAIEGVEAVSPLNGVPLGLWGNYTSVYPNLDTEYPIDVAGYYGSDEHIVENLGLTLIAGDNLTLSDTTITANGGHNISSNILITKAFAELVSPEDWRQAVGQTVYTSNTPQRIKGIVEAMQGAWPRWYGVNGSIIYPVIEVNNTIRYFVRAEPGQLDNIMEEVNKVLLNTPGRVIEKMLTMEEVRLRAYKDDNASSKLLISVCIGLLLATSLGIYGQARFSVNRRKRQIGTRRALGASKGQVMRFFMLENAVVSVTGLVIGFIAALSLSEQFVQHFGLTPVPLPYLLSGMAALFVLGQLSVSYPALQASRVEPAIATRSA
>NZ_CP013188.1|WP_058031741.1|61757_62498_-|5-oxoprolinase-subunit-PxpA
MLLNCDLGESFGAWQMGLDSHAMQVIDLANIACGFHAGDPDVMAQTLTLAKKHNVQIGAHPSYPDKQGFGRRSMKLSHDELVNCLHYQIAALDGMAQVHGLSISYVKPHGALYNDMMADNGILETVMQAVSSYAKPLKLMLLATNEQTAHLAMAEKYNLPLLFEAFADRLYTNEGRLTPRTEPNAVHNKPALMAQVEQLLTQGTVTTGSGSTLALRADTLCVHGDNEASIALVKEIKQLIDKEMLK
>NZ_CP013188.1|WP_128724662.1|62509_64222_-|glycosyl-hydrolase-family-3
MLDFRYYCDSGRSKACRQGMTELPKALADLIAKHHIGGVILFAENVPDTTQIVKLTNDLQTAAQQAKHPQPLFISIDQEGGRVARINRAEATSFTGNMSIGATYQKHGTHYASVVATAIGKELNSLGINVNFAPTVDVNNNADNPVINVRSFSENPLEVAKMGAAQVEAFEAQNVVSALKHFPGHGDTSVDSHTGLPLVKHDLQRIEQVELAPFKYIIDKHAPGMIMTAHIQYPVLDNSTFVNKQGEAMIKPATLSRKIMHDLLREKLNYQGVTVTDALDMAGISHFFTPTSAVIETFKAGVDIALMPIAIRTPDDIKKLDELMSALNAAVALGELNKTEIAQSAQRIISLKQQFLADQAPRSAAIAKATLGNPSHRQLESELAVAAITQVKNQDLLPIQAKHKRIHLVMPDTQKCHALEQALLSLSKQELNITCSSLQGFDPKQADQNITNSDLIIAAHANPQQSAVEIGGMDDVKALDSFKLKRNEQPKALLALLKQAKLAGKPTLFISLRAPYEIPTYVSYAQAVLASYAYNVDVVSKNMISGPAFTALAKVILGLEKPEGQLPVSI
>NZ_CP013188.1|WP_058031742.1|64657_65608_+|ABC-transporter-ATP-binding-protein
MTNSVVVSVNNLHHSYGDKSVLKGLDLSLKAGRVYGFLGANGAGKTTLINLLLGRLKASQGSVEILGNRAGSAAAKAKVGAMLQIGSLPANLTVLEQLNLFASYYQSPMPVSKALRLSDLNAHENSPFSKLSGGLKQRLLFAIAIIGDPQLVFLDEPSLAMDVNARQQMWQTIRQLKAQGKTVVLTTHYMEEAEVLSDELFILNEGKIIAQGSPSELSHNMQLSEVSFACELNESELSALLPEWSWQVNEGKAATRCKAPNAMLKQAFVNGLSCDLLSVKPSSLEQTFLSLTETAEHEDKTPVNSASEKSAKEQAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	LC494302	Escherichia phage SP27 DNA, complete genome	335460-335488	3	0.897
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	LT603033	Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I	276971-276999	3	0.897
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	103968-103996	3	0.897
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	MK817115	Escherichia phage vB_EcoM_phAPEC6, complete genome	141080-141108	3	0.897
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	MT446416	UNVERIFIED: Escherichia virus TH47, complete genome	252276-252304	3	0.897
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NC_027364	Escherichia phage PBECO 4, complete genome	295209-295237	3	0.897
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	MK327931	Escherichia phage vB_EcoM_G17, complete genome	166385-166413	3	0.897
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP044541	Borrelia sp. CA690 plasmid lp36, complete sequence	12550-12578	5	0.828
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP017215	Borreliella burgdorferi strain B331 plasmid B331_lp28_6, complete sequence	21934-21962	5	0.828
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NC_018987	Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence	2776-2804	5	0.828
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NC_017408	Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence	4722-4750	5	0.828
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NC_010918	Candidatus Phytoplasma australiense plasmid pCPa, complete sequence	2029-2057	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP024406	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-13	10173-10201	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP024213	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-6	10169-10197	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP018746	Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed1	24563-24591	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP024367	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-12	10148-10176	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NC_017233	Borreliella afzelii PKo plasmid lp28-3, complete sequence	13760-13788	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	KT372714	Bacillus phage vB_BtS_BMBtp16, complete genome	5295-5323	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP024329	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-10	1394-1422	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP024344	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-9	2839-2867	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP024401	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp64, complete sequence	53883-53911	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP028865	Borreliella garinii strain 20047 plasmid lp36, complete sequence	12437-12465	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP024387	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-12	2822-2850	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_KX839207	Klebsiella pneumoniae strain KP1814 plasmid pKP1814-1, complete sequence	129089-129117	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP021328	Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence	342326-342354	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	636524-636552	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP019048	Klebsiella pneumoniae subsp. pneumoniae strain RJA166 plasmid pRJA166a, complete sequence	40339-40367	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	399909-399937	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP053970	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence	106354-106382	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	399948-399976	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP022441	Klebsiella sp. LY plasmid unnamed3, complete sequence	214978-215006	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP053979	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence	14566-14594	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP013277	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence	232888-232916	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP024641	Klebsiella michiganensis strain F107 plasmid unnamed1, complete sequence	11449-11477	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP024641	Klebsiella michiganensis strain F107 plasmid unnamed1, complete sequence	304123-304151	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP039723	Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence	289-317	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP009348	Bacillus thuringiensis HD1002 plasmid 2, complete sequence	232889-232917	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP045024	Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence	232501-232529	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP026369	Klebsiella quasipneumoniae strain A708 plasmid pA708-1, complete sequence	106008-106036	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP028952	Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence	8573-8601	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	MN661402	Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence	245746-245774	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_KY270853	Raoultella ornithinolytica strain YNKP001 plasmid pYNKP001-dfrA, complete sequence	14462-14490	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP025467	Klebsiella pneumoniae strain JS187 plasmid p187-1, complete sequence	206201-206229	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	56056-56084	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NC_018107	Klebsiella michiganensis E718 plasmid pKOX_R1, complete sequence	182784-182812	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NC_018516	Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence	324096-324124	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	KU318421	Klebsiella pneumoniae strain KP04 plasmid pKP04VIM, complete sequence	15000-15028	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NC_023911	Raoultella planticola strain KpNDM1 plasmid pKpNDM1, complete sequence	233541-233569	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP025964	Klebsiella pneumoniae strain WCHKP34 plasmid pIMP4_LL34, complete sequence	149976-150004	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP038277	Raoultella ornithinolytica strain WLK218 plasmid pWLK-238550, complete sequence	197785-197813	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	CP027603	UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence	47546-47574	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP046614	Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-2, complete sequence	14919-14947	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP009334	Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence	258292-258320	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP026014	Klebsiella variicola strain 13450 plasmid p13450-1, complete sequence	95323-95351	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP026019	Klebsiella pneumoniae strain 13190 plasmid p13190-1, complete sequence	252446-252474	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_MF344561	Klebsiella pneumoniae strain 11219 plasmid p11219-IMP, complete sequence	16066-16094	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_MF344566	Klebsiella pneumoniae strain A324 plasmid pA324-IMP, complete sequence	14672-14700	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_MF344562	Klebsiella pneumoniae strain 12208 plasmid p12208-IMP, complete sequence	16065-16093	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_MF344567	Klebsiella pneumoniae strain A708 plasmid pA708-IMP, complete sequence	15000-15028	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_MF344563	Klebsiella pneumoniae strain 13190 plasmid p13190-VIM, complete sequence	14911-14939	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_MF344564	Klebsiella pneumoniae strain 13450 plasmid p13450-IMP, complete sequence	16066-16094	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	MH494197	Escherichia phage CMSTMSU, complete genome	284518-284546	6	0.793
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	647601-647629	7	0.759
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP015806	Borrelia mayonii strain MN14-1539 plasmid lp28-3	17791-17819	7	0.759
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP015791	Borrelia mayonii strain MN14-1420 plasmid lp28-3, complete sequence	17791-17819	7	0.759
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	531439-531467	7	0.759
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP019365	Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence	14161-14189	7	0.759
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	194123-194151	7	0.759
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	MN480762	Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence	143442-143470	7	0.759
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP018875	Bacillus megaterium strain JX285 plasmid unnamed2, complete sequence	43166-43194	7	0.759
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP015633	Borrelia turicatae strain BTE5EL plasmid lp31	24281-24309	7	0.759
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	190197-190225	7	0.759
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP009064	Borreliella afzelii K78 plasmid lp28-3, complete sequence	10217-10245	7	0.759
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP041065	Bacillus megaterium strain KNU-01 plasmid pKNU_01_2, complete sequence	133208-133236	7	0.759
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP026695	Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP3, complete sequence	55348-55376	8	0.724
NZ_CP013188_1	1.1\|54774\|29\|NZ_CP013188\|PILER-CR	54774-54802	29	NZ_CP015284	Streptococcus salivarius strain ATCC 25975 plasmid, complete sequence	116496-116524	8	0.724

1. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 3, identity: 0.897

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ttgtttttaatttcttgattaaatctttt	Protospacer
****************.*****.****.*

2. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 3, identity: 0.897

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ttgtttttaatttcttgattaaatctttt	Protospacer
****************.*****.****.*

3. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 3, identity: 0.897

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ttgtttttaatttcttgattaaatctttt	Protospacer
****************.*****.****.*

4. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to MK817115 (Escherichia phage vB_EcoM_phAPEC6, complete genome) position: , mismatch: 3, identity: 0.897

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ttgtttttaatttcttgattaaatctttt	Protospacer
****************.*****.****.*

5. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to MT446416 (UNVERIFIED: Escherichia virus TH47, complete genome) position: , mismatch: 3, identity: 0.897

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ttgtttttaatttcttgattaaatctttt	Protospacer
****************.*****.****.*

6. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 3, identity: 0.897

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ttgtttttaatttcttgattaaatctttt	Protospacer
****************.*****.****.*

7. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to MK327931 (Escherichia phage vB_EcoM_G17, complete genome) position: , mismatch: 3, identity: 0.897

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ttgtttttaatttcttgattaaatctttt	Protospacer
****************.*****.****.*

8. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP044541 (Borrelia sp. CA690 plasmid lp36, complete sequence) position: , mismatch: 5, identity: 0.828

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ctttctttactttcttaattaagtctgct	Protospacer
.* *.**** **************** **

9. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP017215 (Borreliella burgdorferi strain B331 plasmid B331_lp28_6, complete sequence) position: , mismatch: 5, identity: 0.828

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ctttctttactttcttaattaagtctgct	Protospacer
.* *.**** **************** **

10. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NC_018987 (Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence) position: , mismatch: 5, identity: 0.828

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ctttctttactttcttaattaagtctgct	Protospacer
.* *.**** **************** **

11. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NC_017408 (Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence) position: , mismatch: 5, identity: 0.828

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ctttctttactttcttaattaagtctgct	Protospacer
.* *.**** **************** **

12. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NC_010918 (Candidatus Phytoplasma australiense plasmid pCPa, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
agagttttaatttattaattaattcttct	Protospacer
  . ********* ******** ******

13. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP024406 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-13) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
cttcctttactttcttaattaagtctgct	Protospacer
.* ..**** **************** **

14. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP024213 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-6) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
cttcctttactttcttaattaagtctgct	Protospacer
.* ..**** **************** **

15. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP018746 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed1) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
cttcctttactttcttaattaagtctgct	Protospacer
.* ..**** **************** **

16. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP024367 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-12) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
cttcctttactttcttaattaagtctgct	Protospacer
.* ..**** **************** **

17. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NC_017233 (Borreliella afzelii PKo plasmid lp28-3, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
cttcttttactttcttaattaagtctgat	Protospacer
.* .***** ****************  *

18. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to KT372714 (Bacillus phage vB_BtS_BMBtp16, complete genome) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
gagattttaatttctcaattaaatcttcc	Protospacer
  * ***********.******.*****.

19. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP024329 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-10) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
cttcctttactttcttaattaagtctgct	Protospacer
.* ..**** **************** **

20. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP024344 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-9) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
cttcctttactttcttaattaagtctgct	Protospacer
.* ..**** **************** **

21. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP024401 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp64, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
cttcctttactttcttaattaagtctgct	Protospacer
.* ..**** **************** **

22. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP028865 (Borreliella garinii strain 20047 plasmid lp36, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
cttcctttactttcttaattaagtctgct	Protospacer
.* ..**** **************** **

23. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP024387 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-12) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
cttcctttactttcttaattaagtctgct	Protospacer
.* ..**** **************** **

24. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_KX839207 (Klebsiella pneumoniae strain KP1814 plasmid pKP1814-1, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

25. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP021328 (Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

26. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
taacttttaatttcttatttaaatctttt	Protospacer
* ..************* ****.****.*

27. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP019048 (Klebsiella pneumoniae subsp. pneumoniae strain RJA166 plasmid pRJA166a, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

28. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
taacttttaatttcttatttaaatctttt	Protospacer
* ..************* ****.****.*

29. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP053970 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
gtttctttaatatcttaattacgtcttca	Protospacer
 * *.****** ********* ******

30. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
taacttttaatttcttatttaaatctttt	Protospacer
* ..************* ****.****.*

31. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP022441 (Klebsiella sp. LY plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

32. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP053979 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
gtttctttaatatcttaattacgtcttca	Protospacer
 * *.****** ********* ******

33. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP013277 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
gtttctttaatatcttaattacgtcttca	Protospacer
 * *.****** ********* ******

34. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP024641 (Klebsiella michiganensis strain F107 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

35. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP024641 (Klebsiella michiganensis strain F107 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

36. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP039723 (Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
gtttctttaatatcttaattacgtcttca	Protospacer
 * *.****** ********* ******

37. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP009348 (Bacillus thuringiensis HD1002 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
gtttctttaatatcttaattacgtcttca	Protospacer
 * *.****** ********* ******

38. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP045024 (Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
gtttctttaatatcttaattacgtcttca	Protospacer
 * *.****** ********* ******

39. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP026369 (Klebsiella quasipneumoniae strain A708 plasmid pA708-1, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

40. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP028952 (Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

41. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to MN661402 (Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

42. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_KY270853 (Raoultella ornithinolytica strain YNKP001 plasmid pYNKP001-dfrA, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

43. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP025467 (Klebsiella pneumoniae strain JS187 plasmid p187-1, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

44. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
taacttttaatttcttatttaaatctttt	Protospacer
* ..************* ****.****.*

45. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NC_018107 (Klebsiella michiganensis E718 plasmid pKOX_R1, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

46. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NC_018516 (Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
gtttctttaatatcttaattacgtcttca	Protospacer
 * *.****** ********* ******

47. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to KU318421 (Klebsiella pneumoniae strain KP04 plasmid pKP04VIM, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

48. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NC_023911 (Raoultella planticola strain KpNDM1 plasmid pKpNDM1, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

49. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP025964 (Klebsiella pneumoniae strain WCHKP34 plasmid pIMP4_LL34, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

50. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP038277 (Raoultella ornithinolytica strain WLK218 plasmid pWLK-238550, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

51. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to CP027603 (UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

52. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP046614 (Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-2, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

53. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP009334 (Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
gtttctttaatatcttaattacgtcttca	Protospacer
 * *.****** ********* ******

54. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP026014 (Klebsiella variicola strain 13450 plasmid p13450-1, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

55. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP026019 (Klebsiella pneumoniae strain 13190 plasmid p13190-1, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

56. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_MF344561 (Klebsiella pneumoniae strain 11219 plasmid p11219-IMP, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

57. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_MF344566 (Klebsiella pneumoniae strain A324 plasmid pA324-IMP, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

58. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_MF344562 (Klebsiella pneumoniae strain 12208 plasmid p12208-IMP, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

59. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_MF344567 (Klebsiella pneumoniae strain A708 plasmid pA708-IMP, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

60. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_MF344563 (Klebsiella pneumoniae strain 13190 plasmid p13190-VIM, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

61. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_MF344564 (Klebsiella pneumoniae strain 13450 plasmid p13450-IMP, complete sequence) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
tcattcttaatttctcaattaagtctgcg	Protospacer
*..**.*********.********** *

62. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 6, identity: 0.793

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
attgttttaatttcttgattaaatctttt	Protospacer
 *  ************.*****.****.*

63. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.759

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ctggttttaatttcttaattaagttaata	Protospacer
.** ********************.  .

64. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP015806 (Borrelia mayonii strain MN14-1539 plasmid lp28-3) position: , mismatch: 7, identity: 0.759

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
catcctttactttcttaattaagtctgct	Protospacer
.  ..**** **************** **

65. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP015791 (Borrelia mayonii strain MN14-1420 plasmid lp28-3, complete sequence) position: , mismatch: 7, identity: 0.759

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
catcctttactttcttaattaagtctgct	Protospacer
.  ..**** **************** **

66. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 7, identity: 0.759

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
cgctttttaatttcttcattaagtatcat	Protospacer
.  ************* ******* *. *

67. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP019365 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence) position: , mismatch: 7, identity: 0.759

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
taataattaatttcttaattaagacttag	Protospacer
* .*  ***************** ***

68. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 7, identity: 0.759

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ggttttttaatttcttatttaagactatt	Protospacer
   ************** ***** ** .*

69. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 7, identity: 0.759

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ttgttttttatttcttaactaagaagaat	Protospacer
******** *********.****     *

70. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP018875 (Bacillus megaterium strain JX285 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
atatttttaataacttaattaagtctaac	Protospacer
 *.********  *************  .

71. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP015633 (Borrelia turicatae strain BTE5EL plasmid lp31) position: , mismatch: 7, identity: 0.759

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
taataattaatttcttaattaagacttag	Protospacer
* .*  ***************** ***

72. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 7, identity: 0.759

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ctttgattaatttcttaattaactcttta	Protospacer
.* *  **************** ****.

73. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP009064 (Borreliella afzelii K78 plasmid lp28-3, complete sequence) position: , mismatch: 7, identity: 0.759

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
cttcctttactttcttaattaagtctgat	Protospacer
.* ..**** ****************  *

74. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP041065 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_2, complete sequence) position: , mismatch: 7, identity: 0.759

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
atatttttaataacttaattaagtctaac	Protospacer
 *.********  *************  .

75. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP026695 (Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP3, complete sequence) position: , mismatch: 8, identity: 0.724

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ccttttttaatttcttgattaagtttaac	Protospacer
.. *************.*******.*  .

76. spacer 1.1|54774|29|NZ_CP013188|PILER-CR matches to NZ_CP015284 (Streptococcus salivarius strain ATCC 25975 plasmid, complete sequence) position: , mismatch: 8, identity: 0.724

ttgtttttaatttcttaattaagtcttct	CRISPR spacer
ttgttttttatttcttaactaagaagaag	Protospacer
******** *********.****

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013187

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013188

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection