CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013200	Arthrobacter alpinus strain ERGS4:06 chromosome, complete genome	8 crisprs	csa3,PD-DExK,DEDDh,WYL,RT,DinG,cas3	0	1	2	0
NZ_CP013201	Arthrobacter alpinus strain ERGS4:06 plasmid pRK01, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013200_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013200_1

180432-180506

Orphan

Consensus_repeat	Method
GGGTTCAGCGCATAAGCGCACTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013200_1

>merge|NZ_CP013200|1|180432-180506|CRISPRCasFinder
GGGTTCAGCGCATAAGCGCACTGGCGAAATCTTATGCTCGGAATTAGCGGCAGGGTTCAGCGCATAAGCGCACTG

>NZ_CP013200|1|1|180432-180506|CRISPRCasFinder
GGGTTCAGCGCATAAGCGCACTG	GCGAAATCTTATGCTCGGAATTAGCGGCA
GGGTTCAGCGCATAAGCGCACTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013200.1\|WP_062285554.1\|174464_174656_-\|DUF2273-domain-containing-protein	unknown	unknown	gnl\|CDD\|378362
NZ_CP013200.1\|WP_062285562.1\|179470_180277_+\|DUF1684-domain-containing-protein	unknown	unknown	gnl\|CDD\|377941
NZ_CP013200.1\|WP_062285551.1\|173467_174058_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_062285564.1\|180544_181762_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|178141
NZ_CP013200.1\|WP_062285572.1\|184567_185167_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319925
NZ_CP013200.1\|WP_062285577.1\|186643_187132_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP013200.1\|WP_082634460.1\|174652_175153_-\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|377129
NZ_CP013200.1\|WP_062285581.1\|188922_190269_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP013200.1\|WP_062285549.1\|172814_173471_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_082634461.1\|187207_188743_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP013200.1\|WP_062285547.1\|172534_172792_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475
NZ_CP013200.1\|WP_062285560.1\|178766_179333_-\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176908
NZ_CP013200.1\|WP_082633924.1\|175764_178638_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|366019
NZ_CP013200.1\|WP_062285568.1\|182772_183873_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227170
NZ_CP013200.1\|WP_062285570.1\|183930_184521_-\|YdeI/OmpD-associated-family-protein	unknown	unknown	gnl\|CDD\|226851
NZ_CP013200.1\|WP_129587359.1\|185875_186589_+\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176908
NZ_CP013200.1\|WP_062285574.1\|185223_185763_+\|NUDIX-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|374457
NZ_CP013200.1\|WP_062285553.1\|174054_174468_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_062285558.1\|175333_175639_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_062285566.1\|181758_182538_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187629

Protein	Function_ID	Function_description	E-value
NZ_CP013200.1\|WP_062285554.1\|174464_174656_-\|DUF2273-domain-containing-protein	gnl\|CDD\|378362	pfam10031, DUF2273, Small integral membrane protein (DUF2273). Members of this family of hypothetical bacterial proteins have no known function.	0.000247656
NZ_CP013200.1\|WP_062285562.1\|179470_180277_+\|DUF1684-domain-containing-protein	gnl\|CDD\|377941	pfam07920, DUF1684, Protein of unknown function (DUF1684). The sequences featured in this family are found in hypothetical archaeal and bacterial proteins of unknown function. The region in question is approximately 200 amino acids long.	6.27489e-40
NZ_CP013200.1\|WP_062285564.1\|180544_181762_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|178141	PLN02526, PLN02526, acyl-coenzyme A oxidase.	3.86721e-126
NZ_CP013200.1\|WP_062285572.1\|184567_185167_+\|hypothetical-protein	gnl\|CDD\|319925	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	0.000182485
NZ_CP013200.1\|WP_062285577.1\|186643_187132_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	5.78388e-06
NZ_CP013200.1\|WP_082634460.1\|174652_175153_-\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|377129	pfam03780, Asp23, Asp23 family, cell envelope-related function. The alkaline shock protein Asp23 was identified as an alkaline shock protein that was expressed in a sigmaB-dependent manner in Staphylococcus aureus. Following an alkaline shock Asp23 accumulates in the soluble protein fraction of the S. aureus cell. Asp23 is one of the most abundant proteins in the cytosolic protein fraction of stationary S. aureus cells, with a copy-number of >25000 per cell. A second Asp23-family protein, AmaP, which is encoded within the asp23-operon, is required to localize Asp23 to the cell membrane. The overall function for the family is thus a cell envelope-related one in Gram-positive bacteria.	1.58026e-27
NZ_CP013200.1\|WP_062285581.1\|188922_190269_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	2.1252e-169
NZ_CP013200.1\|WP_062285547.1\|172534_172792_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	5.55423e-08
NZ_CP013200.1\|WP_062285560.1\|178766_179333_-\|SRPBCC-domain-containing-protein	gnl\|CDD\|176908	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	1.92198e-29
NZ_CP013200.1\|WP_082633924.1\|175764_178638_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|366019	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase.	0
NZ_CP013200.1\|WP_062285568.1\|182772_183873_+\|hypothetical-protein	gnl\|CDD\|227170	COG4833, COG4833, Predicted glycosyl hydrolase [Carbohydrate transport and metabolism].	9.45041e-40
NZ_CP013200.1\|WP_062285570.1\|183930_184521_-\|YdeI/OmpD-associated-family-protein	gnl\|CDD\|226851	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown].	4.57298e-38
NZ_CP013200.1\|WP_129587359.1\|185875_186589_+\|SRPBCC-domain-containing-protein	gnl\|CDD\|176908	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	2.37771e-05
NZ_CP013200.1\|WP_062285574.1\|185223_185763_+\|NUDIX-hydrolase-family-protein	gnl\|CDD\|374457	pfam16262, DUF4916, Domain of unknown function (DUF4916). This domain family consists of uncharacterized proteins around 175 residues in length and is mainly found in various Streptomyces species. The function of this family is unknown. This family is related to the NUDIX hydrolases.	1.8642e-105
NZ_CP013200.1\|WP_082634461.1\|187207_188743_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.07558e-48
NZ_CP013200.1\|WP_062285566.1\|181758_182538_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187629	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs. HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.9731e-121

>NZ_CP013200.1|WP_062285562.1|179470_180277_+|DUF1684-domain-containing-protein
MSTATAELDRLTQRWERFRTGRNSSLASDHGWLTLTSFQWLPASPAPLAEIPGLWSFEGTTASLTATATDHLTLVESGEPVVGTITAALDDEQSIMWVSSDSVVVELGMRANRYMIRTRDSASPVLTNFSAVPVFSYNPNLVVTGTFERWDTPRRTVIATANPLVPGVAELVGEVSFELNGTQYRLAAEEGGLGSLVLTFHDASNEISTSHWRKVELTRPRPDGSVVIDFNRTINYPSAFTDYGTCPAPVTGNTLPVSIEAGERDPRK
>NZ_CP013200.1|WP_062285560.1|178766_179333_-|SRPBCC-domain-containing-protein
MASNASNAEFNKDMTRFPLGTAATVDEERTALTYSRHYAVAPEALWAMLTDPEKTQMWWAKVRGQAKTGSSFDLKWLNVKDEGHGIETDWWYGRIVAADAPKLLEFSNDMHGRIRIELTPTETGTAMTFTNTVAVPDEAVLMSLAGWHVHLDHLHEALEGKSVDWQHWWDDFYPCWEQIYAHYTAERP
>NZ_CP013200.1|WP_082633924.1|175764_178638_-|phosphoenolpyruvate-carboxylase
MSSDLQASTQGLGLGQGTDQGTDQGTAPDPELIPEQDTDLRADVRRVSTLLGESLVRQHGPELLAMVEQVRLLTKESKEAARGETGTGPWSANDVAEQVREVLSSLPLEQATDLVRAFAFYFHLANAAEQVHRVRSLRSRPEKDGWLAKAVTEIAEQAGTEALQKVVNELDVRPIFTAHPTEASRRSVLDKIRKLSDILATPSEEGSSSRARQDRKLAEIIDQMWQTDELRKVRPTPMDEARNAIYYLRNILTDAMPEVLTELSDLLGEHGVKLPADAAPLRFGSWIGGDRDGNPNVTPEVTRDVLILQNQNAVKISLVLIDDLLSVLSNSSALYGADAALTDSTAVDLANLPGIDPRALELNADEPYRLKLTCIKAKLLNTQKRVASDAYHEPGRDYSATSELIADLELLDSSLRNNSAALVADGALASVRRAISSFGLHLATLDIREHADYHHDAVGQLMDRVGDLGTPYAELDRAQRLAVLGAELSSHRPLSGHPIKLDGAANGTYDVFRVVRRALRTYGPDVIETYIISMTRGADDVLAPVVLAREAGLVQLTGSERYAKIGFAPLLETVDELRASAEIVDQLLSDPSYRELVRLRGDVQEIMLGYSDSNKESGVLTSQWEIHKTQRKLRDVAVKHGVNVRMFHGRGGSVGRGGGPTYDAIMAQPNGVLEGAIKFTEQGEVISDKYSLPELARENLELSLAAVMQGSALHQAPRHSDDDLDRFGEIMEVISDAAFGTYRTLIDHADLPAYFLASTPVEQLGSLNIGSRPSKRPDSGSGLGGLRAIPWVFGWTQSRQIVPGWFGVGSGLKAAREAGRSADLQEMLAHWHFFSSTISNVEMTLAKTDMDIAAHYVRTLVPTELQHLFAVIRAEYDLTVAELQLLTGESELLDNQPLLKRSLNVRDQYLDPISYLQVELLRRVREADITKSEVDERLQRAMLITINGVAAGLRNTG
>NZ_CP013200.1|WP_062285558.1|175333_175639_-|hypothetical-protein
MPSFRATIQITGLRPGHAPEEVMDMAVAAVGSAHVVEANQLDIVAGIPRITVRFMVEASEYDAENQFARHAAISLAQGVNEVATTGALRTYRRSAGKWLTV
>NZ_CP013200.1|WP_082634460.1|174652_175153_-|Asp23/Gls24-family-envelope-stress-response-protein
MTTQPQIKNNASTNSANNSAKQTVTSRGTTTVADGVVAKVAGIAAQDIPGVYALGGGAARALGSIREAVGQKDLTQGVSVEVGQTQVAVDVTLVVEYPHPLQKVADAVRDAIYAAVEDVVGMEVTEVNVSITDIHIPSEDDEKPAANKRTDVVADDQVNQREARVS
>NZ_CP013200.1|WP_062285554.1|174464_174656_-|DUF2273-domain-containing-protein
MSATLAGTAIAATLAISALAFGFWAMLLVALFMAVGAVIGRSIDGSLDLRGVIDALRGKRTSS
>NZ_CP013200.1|WP_062285553.1|174054_174468_-|hypothetical-protein
MSAGTLGIKGVAQESAVHSRPRMRAGYTSISAGTMDKLVAAIAADAFNVPLKDVRAGVHDQSGQVSVSLAVPLVLRLAAELNGRSETNGGTVFERAASGRQRVTQGIEVLAGSTVGRVDVRFTGIHEPDPRNAGRVQ
>NZ_CP013200.1|WP_062285551.1|173467_174058_-|hypothetical-protein
MRDEQAREARIINRLNVRETRSSRAVVSIAVAAVLLVAALWLALELVLSTTQNAPVLMSPAELAQRLASLATQTVPGALVAVGVAAALLGIFLLAMAVLPGTKARQVIANNRSAVVVDNAVLASALSRTARTAARLAPEQVATSVGRKRIDVSVHPSSGRVVDTEHIRESVAREVTFYGLRKPLAVGVTTSTAVGS
>NZ_CP013200.1|WP_062285549.1|172814_173471_-|hypothetical-protein
MNGTHRGLNRALLGVLGLVLVAAGASTILAGTNPAFARRWTTAGTEVWAGVQGSLAAAKIPGADISWWSVGVLAVLVIVAVLLVCWIASQGTGRSNQLAAQDNDTGKTTVDTAVAAQAIKAALADNTHVLAASVQSWNNKSWTNKSQSGKSRKNTGAVTNSGLKISIQTRKGASPVEVMAAVDHLVEGLDQLLGFRLPVLVRIKAGTRTLFARTERVA
>NZ_CP013200.1|WP_062285547.1|172534_172792_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGFFSFIILGLIVGAIVKAIMPGKVQGGWITSIILGVVGAIVGGWLGSIIFNVDLGSFFNIKTWLLSIGGGLVVAAAYGAIKGRK
>NZ_CP013200.1|WP_062285564.1|180544_181762_-|acyl-CoA-dehydrogenase-family-protein
MSKQHMELPAADFYDFEALLSPAEKAKLTQLREFLTAEVAPHAVGWWNDAQFPAHILPKIAALDLAAPDRREFSHLFTGLVVAEMTRVDTSLATFFLVHHDLFVQALLDFGTPEQRERLLPDALALRTTGAFALTEPDHGSDVAGGMVTTARHVSDDGGSYWVLNGAKRWIGNGTFCDRMLLWARDADTGQVRGFFLDAASEGVVRNKIENKIALRTVQNAHITLTDVRVPDVDRIVAVSSFEDTNHLLLGSRISVAWQAVGQQLAAFDIARAYAVERQQFGRPLAAFQMIQSQLVRMLGNATSSLAMMVRIAALQDGVSNGGAASDGQLVPSMAQVALAKAHTTAAMRETVSLGRSILGGNGIVSDYGMAKVFADAEAIYTYEGSHEINTLIAGRAITGISAIV
>NZ_CP013200.1|WP_062285566.1|181758_182538_-|SDR-family-NAD(P)-dependent-oxidoreductase
MEISNNGTVALIAGGASGLGAATARRLHAAGAAVVLVDLPTSNGAELAAELGERAVFAPADVTNEDQVRAAIEAAAGLGTLRIVVNCAGVATPGKVLGREGVLPLEQFSRVVQINLIGTFNVVRLCAEAMAAADPLAGEFGSERGVIVNTASVAAFDGQIGQPAYAASKGAVAAMTLPIARELARSLIRVVTIAPGIFETPMLAGLPQAAQDSLGQQVPHPSRLGKPAEYAALVEHILANAMLNGETIRLDGAIRMSPR
>NZ_CP013200.1|WP_062285568.1|182772_183873_+|hypothetical-protein
MTGAAARNEPPAPTHNWAALAAEAGSDVNTRFGHRLIGLPGTWIGSLQAPPPSGSLSTGSATAALAKKRPLPWTEMPWSEWHYWWQSHYLDAIVDAGNHALTQEDAAGARRELRLGKALLRGILIRNFCRFPNHYYDDMAWLALAATRLNELSLHLTSKPATLARSAARTLTKQLHKAHDPVLGGGLYWSRKRDYKNTPVNGPAAAHFARIGEHQIAGAVADWLRSELFDAETGLYQDGIHPSITGRDVEATIYTYNQGPILGALLKLGRPQDLIDAETLIDAISRHLHTPGQGLRLEPGGDGSLFTGILARYLALAAQEDRLPAQTRATASDLIVQTAATVADQRPEILSAAIQRWTILSAAAAI
>NZ_CP013200.1|WP_062285570.1|183930_184521_-|YdeI/OmpD-associated-family-protein
MVELPELLVPDAPAWRAWLAEHHTTNPGVRLVLHKKGGNVTELNYAAALEEALCFGWIDGVSGKRDDGSHLRRFTPRTKTSKWSKINVGHYERLAAAGLMQPAGVAAADAAKADGRWEAAYAGQASAEVPEDLAAAIAASPPAQAMFEVLTSVNRYALIYRTNSVKSPSVRAAKIAGFVAMLEAGETPHPQKRRPK
>NZ_CP013200.1|WP_062285572.1|184567_185167_+|hypothetical-protein
MLRVRPIILTSNFTQTVAQLRELGLSRLENDGDWAEFDSGNGKVVLRRASADNPSVESHSISLAFEVRDCEIFVRRTLEDGTHAEEAHTFTGPGARVTAPDGFSFELAASEDLRLPEPDAVPSAPSAVTAIWRTPDLGAANKVLADIGAKFVQENSDGGALFRAKNGGFVATAKGAVTGVELEIKHQGETLTFGAESES
>NZ_CP013200.1|WP_062285574.1|185223_185763_+|NUDIX-hydrolase-family-protein
MSVRTPDPYPGWLSPEDLYEARNRLPMVYVEAVPVRLDPLGYVNEVGLLLQADENGSMVRTLVSGRVLYRETIRAALIRHIEKDLGPLAFPQLPVSPVPFTVAEFLPSPSQTGFTDERQHAVALVYVIPVTGECEPRQDALELTWMTPEEVLSPGVQEEFVGGRGALVRQAISYAGLGR
>NZ_CP013200.1|WP_129587359.1|185875_186589_+|SRPBCC-domain-containing-protein
MNTQLSVLVNADAEQVWLMLRDPARTAQWHGWEMEGLDTEIQQIFHSKVTESNDHLRLELEMGDVFTLEPRADGTLLTLTRGEATGEWTKYDADITSGWSMFLQQLRFALERHPRTARRTVFVDGTSAAHTNLWDVLGIDTGWLPEPGQPYGLTLNNGATLTGKVWYRNETQVGLTVETYAEHGDGLLILSQQAPLDGVREHPGAQIIASTYGLGAVALDAIADQWDAFMEEHYPDE
>NZ_CP013200.1|WP_062285577.1|186643_187132_-|winged-helix-turn-helix-transcriptional-regulator
MDDRDAVQQMQNELMLLSRYQFRPHPRSAGMLERSAFLLLSRLELVEAMTLKELSQALTLDTSTVHRQVAALLRSEYVHYVPGLPGEVARRLAPTAAGLAALVDTRAINEEGLRDVVGDWPAQRREQFLSLLLRFNQDVEALENTPWPRTGNPPAAGSETAE
>NZ_CP013200.1|WP_082634461.1|187207_188743_+|MFS-transporter
MHTSCTIHKRVYARRIHLFRSLVTHSSPSSSHKVSSPRTAVAVLAFVGIIASLMQTIVVPLIPQLPALLHTTASNTSWVITATLLAGAVVTPIAGRLGDIFGKRRILLISLALLIIGSVICALTSSLGLLLAGRILQGLSMGVIPLGISILRDELPREKVGSAVATISATMGVGGAIGLPISALIAQNSDWHVLFWASAALAVVAFVLVLVALPESPLRTPAKFDGVGAFGLAAGLVALLLPVSKGADWGWSSPLTLGLFAASVVILVLWGIFELRINSPLVDLRVTARPQVLFTNLASVAVGFGMYGMSLTFPQLLMAPEATGYGLGLSMVQAGLAMAPGGLVMMALSPVSARLSARRGPKFTLVIGAVVIGIGYVLAFFLTSAVWQVILAGMVIGAGIGLAYAAMPALIMGAVPLKETGAANGLNSLMRSVGTSTSAAVMGVVLANMTMSLGSATLPSMDGFHTTFGIAILAAVAAVILGALIPRNKQSRDTTPEATQQATPVLVDAQG
>NZ_CP013200.1|WP_062285581.1|188922_190269_+|tRNA-guanosine(34)-transglycosylase-Tgt
MPSPETTADLLAPAPAAVPASPGQPASQREFGFEVTTRLNESCAPTAAAIEQNGGAFQGRTGVITTPHGTIKTPAFIAVGTKATVKAVLPESMEDLGAQALLSNAYHLYLQPGADILDAAGGLGAFMNWQGPTFTDSGGFQVMSLGSGFKKVINMDAVAASPHAGADDSVAVGKERLAHIDDDGVWFKSHLNGDMHRFTPEVSMQVQHQIGADIMFAFDELTTLLNSRGYQEMSLERTRLWALRCIEEHFRLTEERTGKPYQALFGVIQGAQYEDLRRKASHDLGEMNFDGFGIGGALEKENLGTIVRWCAEELPEDKPRHLLGISEPDDIFTAIENGADTFDCVSPTRVARTSAFYTPDGRFNLSGAKYKRDFTPLSDECDCYTCEHYTRAYIHHLFKAKEMVSSTLVSIHNERFVVKMVDDARLAIEDGTFFEFKAETLRRYYPRR

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Crispr_ID: NZ_CP013200_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013200_2

1584370-1584464

Orphan

Consensus_repeat	Method
CCCCACTGAGGTTGGGCGGGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013200_2

>merge|NZ_CP013200|2|1584370-1584464|CRISPRCasFinder
CCCCACTGAGGTTGGGCGGGTTGTTGTGCCTGCTGGCCCCACTGAGGTTGCGCGGGTTGTTGGGCCTGCTGACCCCACTGAGGTTGCGCGGGTTG

>NZ_CP013200|2|2|1584370-1584464|CRISPRCasFinder
CCCCACTGAGGTTGGGCGGGTTG	TTGTGCCTGCTGGCCCCACTGAGGTTGCGCGGGTTGTTGGGCCTGCTGA
CCCCACTGAGGTTGCGCGGGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013200.1\|WP_062293179.1\|1576382_1577483_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239426
NZ_CP013200.1\|WP_160320799.1\|1589576_1590506_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP013200.1\|WP_082634500.1\|1579885_1581013_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP013200.1\|WP_082634140.1\|1575876_1576356_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|181719
NZ_CP013200.1\|WP_062286927.1\|1597334_1597910_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_062286910.1\|1583030_1584125_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370818
NZ_CP013200.1\|WP_129587180.1\|1595604_1596297_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_129587178.1\|1577651_1578518_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238141
NZ_CP013200.1\|WP_062286904.1\|1573986_1575711_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP013200.1\|WP_062286921.1\|1592726_1595516_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP013200.1\|WP_062286907.1\|1578577_1579870_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP013200.1\|WP_129587181.1\|1596387_1597170_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212030
NZ_CP013200.1\|WP_082634141.1\|1581015_1582347_-\|DUF4350-domain-containing-protein	unknown	unknown	gnl\|CDD\|366387
NZ_CP013200.1\|WP_062286914.1\|1587699_1589454_+\|GerMN-domain-containing-protein	unknown	unknown	gnl\|CDD\|237448
NZ_CP013200.1\|WP_062286902.1\|1573039_1573990_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP013200.1\|WP_062286912.1\|1584966_1585641_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP013200.1\|WP_062286917.1\|1590668_1591364_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|238308
NZ_CP013200.1\|WP_082634501.1\|1585903_1587700_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP013200.1\|WP_062286919.1\|1591423_1592650_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225755
NZ_CP013200.1\|WP_062286909.1\|1582343_1583018_-\|DUF4129-domain-containing-protein	unknown	unknown	gnl\|CDD\|379261

Protein	Function_ID	Function_description	E-value
NZ_CP013200.1\|WP_062293179.1\|1576382_1577483_+\|hypothetical-protein	gnl\|CDD\|239426	cd03310, CIMS_like, CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding of the folate substrate.	8.97434e-17
NZ_CP013200.1\|WP_160320799.1\|1589576_1590506_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	2.84013e-35
NZ_CP013200.1\|WP_082634500.1\|1579885_1581013_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	5.06708e-102
NZ_CP013200.1\|WP_082634140.1\|1575876_1576356_+\|chorismate-mutase	gnl\|CDD\|181719	PRK09239, PRK09239, chorismate mutase; Provisional.	1.96855e-48
NZ_CP013200.1\|WP_062286910.1\|1583030_1584125_-\|hypothetical-protein	gnl\|CDD\|370818	pfam10110, GPDPase_memb, Membrane domain of glycerophosphoryl diester phosphodiesterase. Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase.	0.00350357
NZ_CP013200.1\|WP_129587178.1\|1577651_1578518_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238141	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	3.93146e-15
NZ_CP013200.1\|WP_062286904.1\|1573986_1575711_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP013200.1\|WP_062286921.1\|1592726_1595516_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP013200.1\|WP_062286907.1\|1578577_1579870_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.71568e-50
NZ_CP013200.1\|WP_129587181.1\|1596387_1597170_-\|hypothetical-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	1.66826e-05
NZ_CP013200.1\|WP_082634141.1\|1581015_1582347_-\|DUF4350-domain-containing-protein	gnl\|CDD\|366387	pfam00957, Synaptobrevin, Synaptobrevin.	0.000397363
NZ_CP013200.1\|WP_062286914.1\|1587699_1589454_+\|GerMN-domain-containing-protein	gnl\|CDD\|237448	PRK13614, PRK13614, lipoprotein LpqB; Provisional.	1.50484e-159
NZ_CP013200.1\|WP_062286902.1\|1573039_1573990_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.27871e-74
NZ_CP013200.1\|WP_062286912.1\|1584966_1585641_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.22295e-85
NZ_CP013200.1\|WP_062286917.1\|1590668_1591364_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	5.15281e-24
NZ_CP013200.1\|WP_082634501.1\|1585903_1587700_+\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.27105e-55
NZ_CP013200.1\|WP_062286919.1\|1591423_1592650_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|225755	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown].	1.09079e-94
NZ_CP013200.1\|WP_062286909.1\|1582343_1583018_-\|DUF4129-domain-containing-protein	gnl\|CDD\|379261	pfam13559, DUF4129, Domain of unknown function (DUF4129). This presumed domain is found at the C-terminus of proteins that contain a transglutaminase core domain. The function of this domain is unknown. The domain has a conserved TXXE motif.	7.3444e-08

>NZ_CP013200.1|WP_062286910.1|1583030_1584125_-|hypothetical-protein
MAPPKPGIIPLRPLRLGEILDGSFQAARRNGKAMFGSALIFQLISVAATLLVTFMALGQFMFGIMDGTLVIDENDPSSIDGLLGSLVGFSIAIVVTVFVTTLLQMVLQGALVIPVIRSVLNRKTTFTQMWQLAKPRIGTLLLLAVLYAAATLVAVLIYVVLVVVLFISFGATESDSGALAAVGLSILISLPFLAAGLWIGTKVLVAPAAIVVENIGALAAVKRSWQLTKQNWWRTFGTALLAAIIASVIGGIITTPVSFIVGLIMGTMSIEATQEQALAQTIIVQVISSGIGALVGAVTLAFQTAVMALIYVDLRMRRDGFDITLLKESESGKDDGGIPGAPSPAAMVPGAYSSGASQYPGTNV
>NZ_CP013200.1|WP_062286909.1|1582343_1583018_-|DUF4129-domain-containing-protein
MVATALVPFLNFFDVPVTPGADEARRWAAEELAKQSYQDAKPGWLRQILDLLGRALQELLNNVGTAKGNIGLSVVIGLVVVAVLAIIFIVRPRLNRKKAMDKAVFDAEMTLSADQHRKLAKTAAHAGDLHTAINEQFRALARAGEERDVTARTPGRTAVEIAAELELSFPSLSAEIHRAADLFNAVRYGKVPPTQSMYDELLATDTAVARATPIYADDFTAVSL
>NZ_CP013200.1|WP_082634141.1|1581015_1582347_-|DUF4350-domain-containing-protein
MSLSPVPTSTAPRSDAPENNASDNTAPDGTVNHVFVAEDTTAARRLNKWWRKYRFWIIGGAVFVLLSVVAFVMSNSGNRSLDALAINNPAPAGAQAAASVLENQGVAVTATKSLLETTDALAQNAYASSTVLFYDPRKILTPTQVSELAAAVEENGAKLVAITPGPLTLKNLSPEISSAGTTAGSQLVDAQCENVDATAAGSIGGTGPDPALNTGPAKGPLLLYKGAQTCFTPNAKAGTASGGFLASNSAGDITALGFSGVVNNHNLDQAGNAALTFRLLGSKPNLLWYTSSLNDVPPAQTSPSFADLTPAWMFPASAWLMLVALVGVLWRGRRNGPLVAEPLPVIVKASETMAGRARLYQDARAVDTATRTLQHASLTRLARALRLGHSADPSVVVEAVAAATSRPSTHVHAILLGEPPHTEKDMLRIAAELAALEEEVARR
>NZ_CP013200.1|WP_082634500.1|1579885_1581013_-|MoxR-family-ATPase
MPHPETNPESYPQHGYPGSPSPQQPPQYQQQYQVQQPAYQPPAPPVNQPVQQAVQQRPAPSPSAQALLAVRTEVAKAVVGQEDTVTGLLIALLAGGHVLLEGVPGVAKTLLVRALSTALSLDTKRVQFTPDLMPGDVTGSLIYDASTSAFTFREGPVFTNILLADEINRTPPKTQASLLEAMEEHQVSVDGVSRKLPAPFMVAATQNPVEYEGTYPLPEAQLDRFLLKLTMELPGRDDEIEVIRRHSLGFDPQNLHAAGVRPVAGAAELAQAREEVAQVNVAGEILAYVVDLVRATRTAPSFQLGVSPRGATAILKSARAYAWLSGRTFVTPDDIKALALPTLRHRVALRPEAEMDGVAVDGILLSILATVPVPR
>NZ_CP013200.1|WP_062286907.1|1578577_1579870_-|DUF58-domain-containing-protein
MAISGRFFFLALAALIPVVVFPGPMSWVLAVSVLLVVLVVDLVLAASPRKVSLRRSLPSGVRLGEPATAVLRLANNSSTVLRAQVKDGWQPSAGAVNALARVQIRAGERAALTVELLPSRRGDLATHHVTIRSFGPLGMAARQHTIAAPGVLRVLPPFHSKRHLPSKLRKLRELDGKAAVQIRGAGTEFDSLRDYVRGDDVRSIDWRATARRRDVVVRTWRPERDRRVVIVLDTSRTSATRIDDETALDTGIEASLLLAVLAERGGDRVSLVAYDRRVRAKVSSTGKGNMLNAMVQALAPLEPELIELNAQGIAGQVRDVTAHRALVVLVTSLDAGAAEEGLIPLVTTLSQKHVVVVATVRDPALERARLERSSSTLVYRAAAAEHALNRREAITSYLKQAGVEVVDATPAELPPKLADLYIKLKAAGRL
>NZ_CP013200.1|WP_129587178.1|1577651_1578518_+|SGNH/GDSL-hydrolase-family-protein
MTGGEMGRRKISRSLGALIAAAVVLLALPPSAVVSIPATMPSASATTEATPVNGPSPTPVIGPVSAAVGDSLTHSLVLNPASGRYESVDANIASTAVLIGDSQSAGAAGVRAADTWVERGLSYGGYAVKFVGASGTGFTRSSARFGNYPDALEKGQMVLPHGNPALVVVQGGGNDAAAGATDAEILANAGRLLRGLKESYPNSQFLFIGTLARGGKAGGRRNEVDMLVAGFAHRNGAYFISAGDWLTRYELSNKMADGVHLTLEGHQILGKVLASRLKDLKLLGPKLH
>NZ_CP013200.1|WP_062293179.1|1576382_1577483_+|hypothetical-protein
MAQGQGGAFSESVTATALGPWPGTDPVEATKVSVGIFPSPHLPFMPQLPARGVGSDPIGRTASLLTELPVDVQPYGWRFVDRIGLDFRRAESALSTDINVLADVVGDGELSPEALKIQMVGPFSLAAAIHLHYGERSLRDYGARRDIAQSLAAGLAIHAQKVQAGVPGAALTLQIDEPHIAAVLAGTIPTASGYRSLRAIPRSELRQVWSDLVADARVAGFSQVAINLAPAEKALGEAGDDAPAAEAAQWRHALEIAVECGIDAVALPLNKLDGGHWEILAGAVEAGLGVWAGTVPAAADRAQLPYAALVERIMRPWRKLGLAESGLNQLRITEESNMTALTPQQARAVLGKTLDVAQALGDIRNA
>NZ_CP013200.1|WP_082634140.1|1575876_1576356_+|chorismate-mutase
MTESSHAAHLSVEDFDPAASSLTGAVAPAVMAELLSIRSSIDNFDATLVYLLAERFKATQRVGILKATHQLPAGDPGREKAQIQRLRALAESAHLDPAFAEKFLNFIISEVIHHHQAISQSHSAAAATGGVPVVSLDGLGFVADPQAAPVMDDGGTQPK
>NZ_CP013200.1|WP_062286904.1|1573986_1575711_+|ABC-transporter-ATP-binding-protein
MSRSTENAANASVPKGEKSPRSVLEIADLKVTFATDQGDVLAVKDVSFTVAPGEIVAIVGESGSGKTVTAKTILGLLPETADSSGAVIISGNDVLSVSAQEMRQIRGRDVAMVFQEPSTALNPVYTVGWQIAEGLRAHRPEGKRVGKKEARKLAIEALAKVGIPEPEKRVDYYPHQFSGGQKQRVVIAAALALNPGLIVADEPTTALDVTVQAEILELLRDLRDRYGTSIVLITHNMGVVADLADRVVVMYQGDVVEEASSAVLFDAPQQDYTKALLAAVPHLGRNSASAGFTERAFQDKEVLVRATDLEIEYPGRLGSPAFKAVDKVSFTISAGEVFGLVGESGSGKTTIGRAIAGLNRTTGGSLNVLGYEMLNYKERTFRPLRKDIGFVFQDPAASFNPYLSIGECVAEPLLIHTDLSGPAVTKRVGELLESVQLPAAYAKRFPHELSGGQRQRASLARGLALSPKLLIADEPTSALDVSVQAKVLELFREIQNELGFAALFISHDLAVVDILAQWVGVLYKGKMVEQGIGNQVMGNPQADYTKRLIASLPVPNPAEQAKRRAAHQALLTAK
>NZ_CP013200.1|WP_062286902.1|1573039_1573990_+|ABC-transporter-permease
METKKSLFSRLPVIAQLKKSMGLQRGMLVAGIVLTLIFLLTAALAPVISPYGPTQRFDETQAAPSSVHLWGTTAGGYDVLSRTIWGAQTAVFVIVIAVALSIFIGVILGLLSGYLGGWLDRILVVVADAIYAFPTLLLAMVMSIALTQGSSDMWAGIFAAAISITVVFIPQYFRVIRAETIRLKAEPFVESAIVVGASTVRIMARHIFKNATRTLPLIFTLNASEAILTLAGLGFLGFGIEPSSAAEWGYDLNHAQSDATAGIWWTGVFPGAAIVLTVLGLTLLGESMNDLNDPRLRGRKKTKKNAAKKQEELVEA
>NZ_CP013200.1|WP_062286912.1|1584966_1585641_+|response-regulator-transcription-factor
MKARILVVDDDEALAEMIGIVLRNDGFDPVFCADGAKALETFQSSKPDLVLLDLMLPGIDGIEICRLIRAESDVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRARLRPGDVKAPETLVIGEISIDVAGHAVRRAGERISLTPLEFDLLVALARKPWQVFSRELLLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYKAGQ
>NZ_CP013200.1|WP_082634501.1|1585903_1587700_+|HAMP-domain-containing-protein
MLAAVGKGILRVFSGLRHAFSRRWRTSLQFRTVVTTLLIASVAVVGVGGYLAGQISNGLFKERLAQAQQESARGTTQVQDSFSGASLSDQPRVATYVGDTLRLLELGGADDSRKYLMVKIPGQNSRLAVSSSDSGGVTTAIIPDELRQAVQADPDSQFWQSISLPTGEAGFSPAVVVGSQVELLRTNYELYMIYDLNSAQVTLNYIQSVLWVAGAILLVLIGAIAWYVTRTVVKPVSEAAAVSEKLAAGELEERMAVTGEDEMARLATSFNKMATSLQDQITALGTLSEMQQRFVSDVSHELRTPLTTVRMAAEVLYDAREDFDPINKRSSELLFHQVERFELLLADLLEISRFDAGVADLDAELLDIFSVIHSVIDGAMPVAEANKSELSVVTRLRNHKCVVEMDSRRIDRILRNLVLNALEHSEGNPVKIYVSADEDAVAVAVRDYGIGMSPDAVGHVFDRFWRADSARARTTGGSGLGLSIAMEDARLHDGWLDAWGVPGEGSCFRLTLPRKRGTVLTHSPVPLPPDGGAASSSSSLSTGPLLLTHTGSLGVVGALGSIKSVPGVKNVPESGKTQEQHGPESDDPGMNSSEKVNH
>NZ_CP013200.1|WP_062286914.1|1587699_1589454_+|GerMN-domain-containing-protein
MSPKAQVIQGRPATREQRHSTVSLWAMVVVVLLAVTGCATIPLHGNVGKSDPIGPRNSSVNISLQQFSPVDGASPESIIRGFIDSGTGISDDFQVARQYLTPALAQSWAPDKRTLVYKDTFAVTPSTDAQTFELKLDLVSTVDAAGVLTPAKGNSSELLRMKMVQVDGQWRISEAPDGVILTEANFQTLYAPVSLYFYDPSFTYGVPDVRWLAGRTSRTATSIVKAMLNGPAPYLQGAVVSAFPAGIALERDSVPVNNGQAQVGLTAQQLLATSTEQRQQMNAQLLTTFQKSLNTITEVQFLADDRSVDMGGNGDAVSHMIIDNPVPPTQIALAQKNLVSFDGTKIAPIAGVDPVADLDPSAPAISYSGKNFAFLSGPGNQIYTVSANQQPALALSGVALTPPSFAPNGWLWSAAGDGSGLVLAINPNGGGKLGTPVMMTIPWLVGQEVSTFRVSRDGTRALVISAANGVSKVSITGIFKSGDVPKELTAPIRLPHTGSPTLGVWAGDSSVAIMAPSASKPVIIEVLDLAASPVEMDELKGVQWISAGSGVRNVHAQTATEFYTNVGNYWEVDAKEIQQGSFAG
>NZ_CP013200.1|WP_160320799.1|1589576_1590506_+|ComF-family-protein
MDAIEGTDGTDNTEGADYTEATDAQELGAGQAGRHRGHPRALWLRASLWCAAAWRDFLYLVMPADCVVCGAEDHTLCPECSAALRQQTAAPFRAEHSADALVGVAGNSLLPVIAAGEYRDALSQAILGFKNHGRTELGPPLARCLARALLLLNSSSCTEQPPTSELLLLVPIPSTGSGWRRRGYDPVALILRAVTREARLPSGMELVPLLRIKAKLPWHTTNQKGLGRAARRRNVRNTMAIAGKTLKNFRLKANPSGQSVILIDDVLTTGSTLREAAKTLENAGFCVRAAVVLAAARAPSPNTESTTEE
>NZ_CP013200.1|WP_062286917.1|1590668_1591364_+|ribosome-associated-translation-inhibitor-RaiA
MEFMITGRNLSVSDRFREYAGEKLTKIEQLATKVQRVDVKVSKESKARTADTPLTVELTVVGRGPVIRAEAAASDKFAAFDLAYGKLLERLRRAKDKKKVHHGRHAPVAVNEATGSLPTVSSSEPIYAQTTPEVVEEKSPYDIENDIPAGDSPVLIRRKVFPPTALSLDDAVDNMEMVGHDFYLFIDAATGIPSVVYRRKGWTYGVISLDENADAAEEISAYRSADEPARV
>NZ_CP013200.1|WP_062286919.1|1591423_1592650_+|winged-helix-turn-helix-domain-containing-protein
MNASLSLSQARRIALKAQGLSTVRPTQPVTARRVGRTFAQIQLVQIDSVNVLSRSHYLPFFSRLGPYDHALVDGLAGRPPRKLMEYWAHEASFIQPSQFHDLRLWQHRSWVGSAGMETALRDELEGRILAVLTGDLALTAREIKERVGHEEVADRSHWGWNWNAVKRTLEGLFERGIVGAASRNETFERRYALIEKILPPADQGLFVPGEKMAAADKEEAMIRLVSAAARAHGIGTTRCFADYFRLPVNAVTQAVRYLVDSGELEQVAVNGWDAVTYLHAAATIPRKAVASALLSPFDSLVFERRRLEKLFDFHYRIEIYTPQQQRKYGYYVLPFLLGENIVARVDLKADRQSGVLVVRGAFAEAGAPKETAIHLATELEAMALWLGLGSVAVHDHGDLSGSLQAALP
>NZ_CP013200.1|WP_062286921.1|1592726_1595516_+|preprotein-translocase-subunit-SecA
MPSLLERVLRTGDRKTLKRLNVLADAIDSLEDSFQTFTDAELREETDKLKLRHEDGESLDDLLPEAFAAVREASSRTLGLRHFRVQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNSLTGKGVHVVTVNDYLAQYQSDLMGRVFRFLGQSSGCIVANQDPSVRRAQYAADITYGTNNEFGFDYLRDNMAWSQDELVQRGHNFAIVDEVDSILIDEARTPLIISGPASGDANRWYGEFAKVVQRLKIEDDYEVDEKKRTVGVLEGGIEKVEDYLGITNLYESANTPLIGFLNNAIKAKELFKRDKDYVIMDGEVLIVDEHTGRILAGRRYNEGMHQAIEAKEGVEIKAENQTLATVTLQNYFRLYGKLSGMTGTAETEASEFMGTYSLGVVPIPTNKPMLRVDQSDLVYKNEVVKFDAVVADIAERHETGQPVLVGTTSVEKSEYLSKKLAEAGVKHEVLNAKNHAREAAIVAQAGRRGAVTVATNMAGRGTDIMLGGNAEFNAVAELKARGLDPEENAEEYEAAWDEAFEEAKLAVKDEHEAVLEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLTDDLMRLFNSGAAERLMSRSSMPDDVALESKLVSKAIASAQGQVEGRNAEQRKNVLKYDDVLNRQREAIYGDRRRILEGGDLHEKVQHFLEDTVNEIIDASLSSGHAGEYDFSTLWSNLRTIYPVTVSVDEIAQEVGGEGRITAEQLKTELLSDARVAYQEREAALGSETMRELERRVVLSVVGRKWQEHLYEMDYLKEGIGLRAMAQRDPLVEYQREGYEMFQSMMASIREESIGFLFNLEVQVENAPAAAVGIVADAPVNLMKRVDGGVEAGEHVHEHEHVAPRITAPGLEAPARPAQLQFTAPDAQGDAETHVERRSTGGLPPSAKRPANKTKTKKKKR
>NZ_CP013200.1|WP_129587180.1|1595604_1596297_-|hypothetical-protein
MSTAAISETAAPATLLVVRNVPAPGGQSGPSPDNVVNLFDLGPQPRKPRRITRGTSMAARSLMAGSTATAGARGTPGTRASRPQARNTTCASGTLGTVHSLDPEQAERAVVSNMSCKVAQSALEILNGVRSVQQLARWLDARCLSALTTRARLHARACRAQARRRSPEGQIENVHLLYRQPRVHSVHCFAVTPGVFETAVIVADKTRFRAIAMRLELSKGMWKVTALRIG
>NZ_CP013200.1|WP_129587181.1|1596387_1597170_-|hypothetical-protein
MKSQARADLAMTAAIVFLGAALVFSGFSLLRLQWGGHAVAPSLGLPELVGVAGAGIGVALLCWWCFALCCAFVSAMAHRLGAHRFSAVTAGCSPAFMRRVVAAVLGIHLLTAPLASAAEAPGVDPLWQAQTVSTAPATPGATTTPVKDPLPPVSTQPVNPLWIPNTPDVEPDLLIRQPPRNDAGTAGQGGSASSATETGDVVVKRGDTLWGIVAESLGPYSSDVDVALAWPQWYNANRSTIGTDPNLILPGQVLHAPGSY
>NZ_CP013200.1|WP_062286927.1|1597334_1597910_+|hypothetical-protein
MRWELLFGDLEAQWHASTQQDFEAHINELARIEAAQLTFAQTLRGATGHQLSVVMCTGTAYHGEVLRVEGEWALLREGNRSVIVPLAKVVRVHGLGLARRQSSTKVIYSLAAALRVLARNRSSIVLEVDVANQAGSSATHVRGVLDQVGADYVQLMQLADGVGRDLGNRQGSVVVPMGRLVSIASSPENEF

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Crispr_ID: NZ_CP013200_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013200_3

1759881-1759970

Orphan

Consensus_repeat	Method
GCCCTCCCTGATCCTGCCGCTGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013200_3

>merge|NZ_CP013200|3|1759881-1759970|CRISPRCasFinder
GCCCTCCCTGATCCTGCCGCTGGCGCGTCAGCCTCTGGGGCCCTCGGGCGCGTGGGCCCAAATTCGGCCCTCCCTGATCCTGCCGCTGGC

>NZ_CP013200|3|3|1759881-1759970|CRISPRCasFinder
GCCCTCCCTGATCCTGCCGCTGGC	GCGTCAGCCTCTGGGGCCCTCGGGCGCGTGGGCCCAAATTCG
GCCCTCCCTGATCCTGCCGCTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013200.1\|WP_062287145.1\|1762986_1763958_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133028
NZ_CP013200.1\|WP_062287134.1\|1753834_1754938_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236013
NZ_CP013200.1\|WP_193393516.1\|1768235_1768757_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_062287138.1\|1758736_1759810_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP013200.1\|WP_082634507.1\|1769116_1769908_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_CP013200.1\|WP_062287152.1\|1768749_1769004_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366233
NZ_CP013200.1\|WP_062287147.1\|1765053_1766937_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|224011
NZ_CP013200.1\|WP_062287127.1\|1747906_1749187_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340897
NZ_CP013200.1\|WP_062287143.1\|1761945_1762953_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|366597
NZ_CP013200.1\|WP_062287148.1\|1766936_1767971_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|133464
NZ_CP013200.1\|WP_129587191.1\|1756166_1758617_+\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|237171
NZ_CP013200.1\|WP_062287129.1\|1749384_1751037_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NZ_CP013200.1\|WP_082634153.1\|1742886_1745934_+\|discoidin-domain-containing-protein	unknown	unknown	gnl\|CDD\|119334
NZ_CP013200.1\|WP_062287156.1\|1770003_1770213_+\|ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|349422
NZ_CP013200.1\|WP_062287157.1\|1770289_1770844_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
NZ_CP013200.1\|WP_062287132.1\|1751040_1752489_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NZ_CP013200.1\|WP_062287126.1\|1746048_1747476_-\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|274539
NZ_CP013200.1\|WP_062287141.1\|1760900_1761854_+\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088
NZ_CP013200.1\|WP_062293219.1\|1752536_1753835_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP013200.1\|WP_082634506.1\|1741419_1742070_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312

Protein	Function_ID	Function_description	E-value
NZ_CP013200.1\|WP_062287145.1\|1762986_1763958_-\|glycosyltransferase	gnl\|CDD\|133028	cd04185, GT_2_like_b, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.33784e-43
NZ_CP013200.1\|WP_062287134.1\|1753834_1754938_+\|threonine-synthase	gnl\|CDD\|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
NZ_CP013200.1\|WP_062287157.1\|1770289_1770844_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	4.91834e-39
NZ_CP013200.1\|WP_062287138.1\|1758736_1759810_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP013200.1\|WP_082634507.1\|1769116_1769908_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	1.63014e-48
NZ_CP013200.1\|WP_062287152.1\|1768749_1769004_+\|hypothetical-protein	gnl\|CDD\|366233	pfam00664, ABC_membrane, ABC transporter transmembrane region. This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions.	0.00590999
NZ_CP013200.1\|WP_062287147.1\|1765053_1766937_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
NZ_CP013200.1\|WP_062287127.1\|1747906_1749187_+\|MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.58652e-98
NZ_CP013200.1\|WP_062287143.1\|1761945_1762953_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|366597	pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.	4.83326e-22
NZ_CP013200.1\|WP_062287148.1\|1766936_1767971_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|133464	cd06854, GT_WbpL_WbcO_like, The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.	2.62979e-69
NZ_CP013200.1\|WP_129587191.1\|1756166_1758617_+\|transcription-termination-factor-Rho	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0
NZ_CP013200.1\|WP_062287129.1\|1749384_1751037_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP013200.1\|WP_082634153.1\|1742886_1745934_+\|discoidin-domain-containing-protein	gnl\|CDD\|119334	cd06564, GH20_DspB_LnbB-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	3.5164e-95
NZ_CP013200.1\|WP_062287156.1\|1770003_1770213_+\|ATP-synthase-subunit-C	gnl\|CDD\|349422	cd18182, ATP-synt_Fo_c_ATP5G3, ATP synthase F(0) complex subunit C3 (ATP5G3) and similar proteins. ATP5G3 (also called ATP synthase lipid-binding protein, ATP synthase proteolipid P3, ATP synthase proton-transporting mitochondrial F(o) complex subunit C3, ATPase protein 9, or ATPase subunit c) transports protons across the inner mitochondrial membrane to the F1-ATPase protruding on the matrix side, resulting in the generation of ATP.	2.67773e-11
NZ_CP013200.1\|WP_062287132.1\|1751040_1752489_+\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	7.67012e-143
NZ_CP013200.1\|WP_062287126.1\|1746048_1747476_-\|family-1-glycosylhydrolase	gnl\|CDD\|274539	TIGR03356, BGL, beta-galactosidase.	0
NZ_CP013200.1\|WP_062287141.1\|1760900_1761854_+\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	1.17666e-53
NZ_CP013200.1\|WP_062293219.1\|1752536_1753835_+\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NZ_CP013200.1\|WP_082634506.1\|1741419_1742070_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.40934e-18

>NZ_CP013200.1|WP_062287138.1|1758736_1759810_+|peptide-chain-release-factor-1
MFESIHGLLDEHAELQMRLSEPEVHADQSLARKLGRRYAELSNVVEGYHQVESIGDDLEAAREMASEDAEFAAEVPVLEEQLAAAQEKLRRLLIPRDPDDGRDVILEVKAGEGGDEAALFAADLVRMYTRYADQRGWKTEIISATSSDLGGYKDISIAVKGRSNDPAEGVYARLKFEGGVHRVQRVPATESQGRIHTSAAGVLVLPEVDEPEEVDINQNDLKIDVYRSSGPGGQSVNTTDSAVRITHLPTGIVVAMQNEKSQLQNREAGMRVLRARILAHQQAIIDAENSAVRKSQIRTMDRSERIRTYNYPENRIADHRTGYKAYNLDSVMNGDLEPVVQSAIEMDEQARLDAIGD
>NZ_CP013200.1|WP_129587191.1|1756166_1758617_+|transcription-termination-factor-Rho
MSLCQPVRRHEGNSTLIIAAPTIGPAIEGEGSFVTETVTSAAAPKSAESNTTGAPAKSAGLAGLKLAQLQALAGQLGITGGSRMRKGDLVEAISAHQRGSSVADRPVRSSSKAGADESAVAANGTAEKADSSVRSTSTRTASARTTRRGSAAKAGAEELNDAPAANADVAPNTPDTEAPERPARGRGRSRRATSSDGVITTDSGAQSGVGAEGTAAVDSASVDAPSTTATAPEASENDGENRRPSRTRNRRSQGGARQQENNTDGAVAAENFVAESAESTEADSAQGEGTENGERNARNQRNNNQRTQRSGNDRNSTDRNSNDRNGNDRAGSERNNSGTAAAGASSNNSSNNNANDDEDGSRNNRNRRNRRDRNSNDSNERNDRNDRSSNNSNNNSRNDRNDRFRDRNERRRGRNAGPDFDDTELTEDDVLLPVAGILDILENYAFVRTSGYLPGSNDVYVSLSQVKKYNLRKGDAVVGAIRAPREGEDLSNAQTARQKFNALVRVTSVNGKNPDELKNRVEFAKLVPLYPSERLRLETDPKKIGPRVIDLVAPIGKGQRGLIVSPPKAGKTLILQAIANAITINNPEVHLMMVLVDERPEEVTDMQRTVKGEVIASTFDRPADDHTQVAELSIERAKRLVEMGMDVVVLLDSMTRLGRAYNNSAPSSGRILSGGVDSAALYPPKRFFGAARNIENGGSLTILATALVETGSKADEVIFEEFKGTGNMELRLSRQLADKRIFPAVDVNGSGTRREENLLSPEEVKIMWRLRRVLSGLEMQQSLELLTSKLRETQSNVEFLMQIQKTTLGSKAEQDK
>NZ_CP013200.1|WP_062287134.1|1753834_1754938_+|threonine-synthase
MAHQWRGVVREYAERLPVTAETKVITLGEGGTPLVYAQHLSALTGSNVYLKVEGMNPTGSFKDRGMTMAMTAAVAAGAKAVVCASTGNTSASAAAYAKAAGLTCAVLVPEGKISMGKLSQAVAHGATILQVDGNFDNCLDVARKLAESYPVFLVNSVNPARIEGQKTGAFEVVDALGDAPDYHVLPVGNAGNISAYWRGYREYAAPYESATAGTLPAVSTHTPIMWGFQAAGAAPFVAGHPILEPDTIATAIRIGNPASWDMAIAARDESGGLIEAVTDEEILAAHRWLSAKEGVFVEPGSAAGVAGLIKKHAAGDVPSGKTFVITVTGHGLKDPDWALKNADGSAAQPKSVAFDVVTVADALGLTA
>NZ_CP013200.1|WP_062293219.1|1752536_1753835_+|homoserine-dehydrogenase
MKTLKVALLGAGNVGSQVARILLEDADALAARTGARLELVGIAVRNVDAPRDVQAPRELYTTDASALVRGADIVIELMGGIEPARTLILEAIEHGATVVTGNKALLAVDGPTLYEKADAAGVQLSYEAAVAGAIPILRPITDSLAGDKITRVMGIVNGTTNFILDAMDSTGAEFADALAEATRLGYAEADPTADIEGHDAAAKGAILASLAFHTRFALEDVNCQGITSVTAGDIAAAKDAGYVIKLLAIAEKLDGGVSVRVHPTLIPREHPLGAVRGAFNAVFVEAESAGELMFYGRGAGGSPTASAVMGDVVSAARRLVLGGPGRTDSTIEVLPVLPIDAVTTRYYIGMDAADQPGVLSKIAALFAENGVSIETMRQTVHRDENENGGPATAELRIVTHRASEAALAATVEAIKGLDIINSVTSVLRVEGV
>NZ_CP013200.1|WP_062287132.1|1751040_1752489_+|diaminopimelate-decarboxylase
MVNTIAGAELAPEWLPAAGDVNELVPAMWAHDVERGHSGEVTISGIPVSELKKQFGTPLFVMSEDDFRARARTFKDAFDVAFADICGGVDVYYAGKAFLSTEVARWVDSEGLRLDTCSGGELAVAKRAGLKGANLGLHGNNKSSAEINRALDMGLGRIVVDSLHELARVAEIAAARGEKANVMLRLTPGVHAHTHESIATAHEDQKFGLSFIAEDPEAPGMSAAEAAAKLAVEAESINFLGFHAHIGSQIFEAEGFEIAARKLLAFTNTIQNKYGIVLPELDLGGGYGIAYTAVDTPRPAAEVAAAMAAVVRETCAELQMAPPRISIEPGRAIVGSTTFTLYETGTLKTVQVEVAGQEDVTAPRRYVSVDGGMSDNARPVLYEADYSAVLASRRSEQTPALSRVVGKHCESGDIVVRDVYLPNDVAAGDLLAVPGTGAYCWALASNYNYVPRPPVVAVTNGTARLIVRGETEDDLLARDLGA
>NZ_CP013200.1|WP_062287129.1|1749384_1751037_+|arginine--tRNA-ligase
MTPEELSAAITTCLKDAVDAGELAVPAEALLTEVKVERPKSREHGDWATNIALQLAKPAGVPPRKIAEILQTRLSEIPGVSKVDIAGPGFLNITVDAAAAGELAKAIVEAGVAFGTNTAMAGTKINLEFVSANPTGPIHLGGTRWAAVGDSLARIFLSQGADVTREYYFNDHGNQIDKFARSLLASAKGEPAPEDGYGGDYIVDIATEVMANNPGILESSDPQEEFRAQGVELMFEAIRKSLHEFGVDFDVYFHENSLFEDGAVEKLLEQLKGSGNMYLKDGAWWLNSTDYGDDKDRVVVKSDGNAAYIAGDIAYFKNKRDRGFDLCIYMLGADHHGYVARLKAAAAAIGDDANRVEVLIGQMVNLVQDGKPVRMSKRAGTVVTMEDLVEVVGTDAARYSLARFSSDSNIDVDLDVLTKKSNENPVFYVQYAHARTCAVARNAAAANVERTAFDAATLSHATESELLAVLGQYPGVLAQAAAFREPHRAARHLEVIAGAYHRWYDACRVTPMGEEPVTDVNRTRLWLNDAVGQVLANGLALLGVSAPERM
>NZ_CP013200.1|WP_062287127.1|1747906_1749187_+|MFS-transporter
MSVKKQHKAWLFVAAIILTALTLRAAVTVVPPLISTINVDLPLSTSTIGILGMLPTAAFAIFGFLTPYMIRWVSLEKLIVLAIVVGIVGQVARVLAPNTPLFLLFSVVAFGGLGAGNVLLPPLVKKHFPTKIGLMTALYVTSISIGTALPAQLAVPVADATNWQVSLAAWAGISTIALIPWLVALMSPRTTPGLTNAVNAPPAVVLQSEETVRFVPTPVAAAPAPKMNLWRSPTAWGLMFMFGCTSLNTYSMFAWLPEILTGAGLDRGQAGSMLALFAALGLPLSLTIPLIAAKMRNPFPAVVVMLACFVAGYLGLLLSPGSGTWIWVSLAGLGPGTFPLSLLLINHRTRTQIGAGVLSGFSQGMGYALACTGPLFFGLLNQWTGSWTAPFIFLFATLLLLGAGAWVICRPRMLEDDFAPRPMRQP
>NZ_CP013200.1|WP_062287126.1|1746048_1747476_-|family-1-glycosylhydrolase
MDKPEFPRFPADFLWGVSTAAYQIEGGVREGGRGPSSWDAFVAEPGRVSNGDTGETACDHYHRYPEDIALMKELGVDAYRFSFSWSRVQPTGKGAVNGVGLGFYDKLVDGLLEAGIAPSPTLFHWDTPLELEQAGGWLNRDTAARFADYAQILGEHFADRIPRWITINEPVVVTMLGYGAGIHAPGLALGFDALPAAHHLLLAHGLGVQALRSAGASNIGIANNHALTWPASDREDDLRAAGIYDNLTNWIFSDPILTGAYPESMAPFLPSTPDGDLAIISTPIDWYGVNSYNPTMVGAPILGAPSSRTSASGASPAEDAALIDGHALDASLPFALREITGYPRTDFDWPIVPGAFTELLLGFKERYGDQLPPIYITENGAAINDGLDHEGRVRDTRRIDYTDTHLRALHDAMRAGVDVRGYFHWSLMDNFEWAAGFSQRFGLVHIDYETQKRTPKDSYYWYQELIRANSLPHPR
>NZ_CP013200.1|WP_082634153.1|1742886_1745934_+|discoidin-domain-containing-protein
MKSTWKTIAAVAALSLPLAGIASPSPAAAAPEAPAINPAPMVVPSLHEWTGGAGTVEIKPTSRIVVSAALNQIGEEFSDDLAEMTGLELDVVTGASQPGDISLVLDIADKYATGGERYDAEGYKLDVSAEEVVVTAPTETGAYYGTRSILQIMTQTDGRNKLPVGGAVDWPDYEARGFILDVGRRVFSADFVDDYIKMMSYYKLNRFQIHLNDNQIFVDNGDWRESYMGFRLKSDNPKYAGLASADGSYDRADWDGFEATAASRGVQIIPEIDVPAHAAAIIKWRPDIGLNGGKSDHLDLSKAETTEVIKGMFDEFMPWFQGAEVNFGADEYPGNKAQYRQFYNDMAEHIRATGKQPGAWGSFTEMSKGTGMSGVEGYDKDVIINSWNNGWYGLNAAAADKMKFINTNDGTLYVVPFADYYHGNGLNNQWLYTDWLPNMAGGEVVDPSQIMGSMFAVWNDLVDRDYNEQDVHGLIERSFPVVAQKTWTAKAPKVSYAAFNTALDKVGMGPSLGTIKDTTPAAGAVDLATGKPAAATSTKAGHPASNLTDGDQNTRWESADNKAAALSVDLGSVQKVGGIAAEWAANAPAGYAVETSKDGVFWDRVTTHEVAGAGPDQLTFPTTEARFVRLAGLTPSAGFDTVGAWSLGVQGVTNVAVGAVATASGNEAPSLPANQAFDGNLATRWSANYNGTRWIAGDLGKEQTVNEVTIAWEGASAKDYTVSTSKDGSSWSIVATKTGMPENKRTDVVSFVPVTARHIKVEVQAANMGIYLSAYEIEVRNTDVTGLGITGTLDGEPNITGALDGETNVDGIFDVEPTVTLAATGAAAADAVIEYRIGNGTWTAYTAPFAVAGYQPTLVDYRATSGEEAFAGYVSLALNTPGASPSPEPTEPVVTDEPTEPVVTDEPTEPVVTDEPTEPVVTDEPTEPVATDKPTEPVVTDEPTEQVVTDKPTAPTVPAVTDKPTVPATTPAAMANGLASTGANVAMLGLVGMLLLGLGMLTMIRRRSARGGHEG
>NZ_CP013200.1|WP_082634506.1|1741419_1742070_-|class-I-SAM-dependent-methyltransferase
MSDPDATPTIGLISGRATAPTAGLAHGLGNGPSSEHSGAATDSRVARTALDVGCGEGADAVWLAHHGWDVTAVDISPVALKRANGHAAKLDLAGSISWEHHNLLTWRPPAFSFNLVSAQFMHLPKVDREPLYSRLAAAVAPGGTLLIVGHSASDIQAGARRPAVPDLYFTAAEIADSLDSKQWHVLVSESRPRMAQNPEGKPITIHDEVLRATRLA
>NZ_CP013200.1|WP_062287141.1|1760900_1761854_+|threonylcarbamoyl-AMP-synthase
MSTTSYNCTNEQQRVEGLAHAQKAIAAKQIIVMPTDTVYGVAADAFSPQAVATLLAAKGRGRNMPPPVLIPRIGTMEGLATEISDDARKLAEKYWPGPLTLIFHAQPTLTWDLGETKGTVALRVPDDQLALDLLTITGPLAVSSANRTGQTAAQTGSEARSQLAESVEVYLEGGFRPLEGTDPTPSTIVDATGLRLRVVREGAISLEEIQRMIPSALGRDVEPEMWAPVNLSKDATETAEPQADSEVPADPEPQADSEVPADPDAPANSEVPAADAPAEELAIDVASHEPVVSGESVPDVSDTDTDTNLQKPEATAS
>NZ_CP013200.1|WP_062287143.1|1761945_1762953_-|NAD-dependent-epimerase/dehydratase-family-protein
MSADSAELRWLVLGASGFVGSAIVEELKQRGATVVSMAAPRLRSAALSAQTTQSGQPAQQIVAEAQALVDGSATVECREALRTAFAGFDVVVNAAGLATPGHGESPELTGANALLPTVAAMAAKDAGVRRFVHLSSASVQGHRRVIDESADRAPFSAYSRSKALGEQALELVAAQLAPLSLVTVRATSVQGRSRPTTQSLIKVASSPIASVAAPGNFATPVSSIDALAWFVVETGQYAAQVPAVILQPWEGLSVSDVLTAAGGRVPRRLPQFVCRWILSAGYFTSRLLGEKLHGPLRRVELMWFGQEQTPGWAASVGLTPVSSIATLLERAREQR
>NZ_CP013200.1|WP_062287145.1|1762986_1763958_-|glycosyltransferase
MSLGRREQFFIVITTFNRADYLEGLLDSVAALNPAPDGVIVVNNASTDTTSSVIEDATARFAALPAPVAVFHLQLAENTGGAGGFSAGVDRALAQGAQWMWLMDDDVTCVPDAIGAFGPWMEKYDAIIGRRYDAEGKPFFWQNNFSTFLGFPLPVRGDVFASSNEFATNVGCFEGMLLHADAARSVGLPDPRFFLNWDDTVYGWLVSLQRPVRYVNEFVLQKVRVQRSLDLGIRHLNDSSDLSRFYVMRNRGLVGQYLRVHGRFNRVGFAFGTLLTASKELLRLIAVEKTLHGSGRLLAGWRESRQILAANDFTPMPPLEGSH
>NZ_CP013200.1|WP_062287147.1|1765053_1766937_+|polysaccharide-biosynthesis-protein
MNTTSTQLGGKSALTSAESDRKPRLWLWSQAILDSFAWTVALFLAVLLRYELDIHLINFAGLGVLVAVAVATQLIAGWYMALYRGRYTFGSIHEARVLVAVTLIVCVVTSIVLSIFIGELHVARSVAVIAFPFAALSMAAIRYAKRLYVEGKPIFGEEAQKTLIYGAGFLGNSLVTRMVQDPESPYVPVGLVDDDATKKHLRLSSVSVIGGGHELPELIKRTKSTVVVLAMAHLSSKRIREISDSVAGLGVKVLILPPLQEMLSPDTNRDHQGGLTDFREIDVADLIGRSPVETEVEQIAGYIRGKRVLVTGAGGSIGSELCRQLISFSPAELIMLDRDESGLQHTQLSIEGHGLLDNKNIVLADIRDAESLHEIFAVRRPEVVFHAAALKHAPLLQMYPQEGWKTNVLGSLNVLQAARSVGVETYVNISTDKAASPTTALGHSKRAAEKLTSWMAGETGQRYVSVRFGNVLGSRGSMLPLFTDQINKGGPVTVTHPDITRFFMTIPEACQLVIQAGAIGHGGDVLILDMGEPVRILDVAERMIAMSGRDIEIKITGLRPSEKLHEQLTGDDEVKNPDGHPKISHTHAKALNPADLDLALWLQRCQDEAGPNGASIDESDGDVAAGA
>NZ_CP013200.1|WP_062287148.1|1766936_1767971_+|glycosyltransferase-family-4-protein
METWAQITVGAIALVLALVLPIFVRPLLARAGVLDVPNARSSHTAPTIRGMGITTAVALPAAVLVAVFLPQSGNTRQGALTLVVILGVVLAAGAIGWMEDIRGLSVKVRAGMQLAVGGLATAAVAILDPGQQQLWLIPIGAIAVAAYVNVANFMDGINGISGTHGLLVGGFYAYAGYAAGHGWMVYVGIAIALAFAGFLPWNLSRNKVFLGDVGSYLLGASIAVTAMCAFLAGVPVEYIFSPVLIYLIDTFVTFLRRLLAGERWYAAHRQHVYQRLTIVGLTHLQATAVVCLATIVVSILGIVAAEGGSTTRVLATAAGFAVVLAYLRTPTLFQSFFRRRAQKA
>NZ_CP013200.1|WP_193393516.1|1768235_1768757_+|hypothetical-protein
MKDASANNSASPGPLAVSGPTASPSWNILKKCFLVDGALVILIALLAFIFTDTDGVISVLFGSLLVMAFFGLSLLVGHLFSKRMPDAVMGIFVLTYFVKVVGFAAVMLALGTPAWLNKPWFAGAAVVAVLAWQATEIVIFSKQRFLLFDESAVVASPSGEVRDDSETKDPPHV
>NZ_CP013200.1|WP_062287152.1|1768749_1769004_+|hypothetical-protein
MSKKTPDADQPDHVVIPPKANAGKLDYTYIIGGILLWGLIGWGLDFLLKTSWIVFAVLPIGAACGYFLARHYQRHGRPDDDQKQ
>NZ_CP013200.1|WP_082634507.1|1769116_1769908_+|F0F1-ATP-synthase-subunit-A
MASNDGGFVPPTISDTHLPDILPWMAEYGTGLGKQMIMVILSVVLITVFFKVAIRNPKLVPGRVQFFAEGFYSFARNTVGRDIMGEKNFRPWIPLLFSVFLFVLLNNIFGAIPLLQLPSFSHAGSAYAIALIIYFTWIAVGVQKHGIRYFKLAVVPTGVPGWILPLMVPLEIISNFIVRPLTHSLRLMATMLAGHMIVALAGSGAAYLITVQESVLLNATGVAVIAGSVAMYFLELLIMVLQAFVFTLLTAIYIQGSLDADAH
>NZ_CP013200.1|WP_062287156.1|1770003_1770213_+|ATP-synthase-subunit-C
MHGSLNMIGYGLAAIGSAIGVGMIFAAYINGVARQPEAQRILQPIALLGFALAEALAILGLVFAFVIGA
>NZ_CP013200.1|WP_062287157.1|1770289_1770844_+|F0F1-ATP-synthase-subunit-B
MITAEVILASSEGANPLLPNLWEVLVTAVAFAVLLFVVKKYIAPIFEKSYTDRVEAIEGGLEKAEEAQAEANALLEQYKAQLMDARTEANSIRETARAEGSQILADLKAKAAEESARITAQAQVQIEAERVAAVNSLRNEVGTLATSLAGKIVGEALNDDARSNRVVERFLADLENQSNAGVTK

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Crispr_ID: NZ_CP013200_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013200_4

1970348-1970438

Orphan

Consensus_repeat	Method
TCTTGATCCGCTCAGCTGAGCCGCCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013200_4

>merge|NZ_CP013200|4|1970348-1970438|CRISPRCasFinder
TCTTGATCCGCTCAGCTGAGCCGCCAGCGGTAGCCGGGGCCGCATCAGGGTTCGGGAGATCAGTCTTGATCCGCTCAGCTGAGCCGCCAGC

>NZ_CP013200|4|4|1970348-1970438|CRISPRCasFinder
TCTTGATCCGCTCAGCTGAGCCGCCAGC	GGTAGCCGGGGCCGCATCAGGGTTCGGGAGATCAG
TCTTGATCCGCTCAGCTGAGCCGCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013200.1\|WP_062287604.1\|1976125_1976368_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|179479
NZ_CP013200.1\|WP_062287614.1\|1978139_1978499_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP013200.1\|WP_062293298.1\|1962031_1962580_+\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NZ_CP013200.1\|WP_062287583.1\|1968463_1968802_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP013200.1\|WP_062287593.1\|1973902_1974784_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|225312
NZ_CP013200.1\|WP_062287580.1\|1967105_1968467_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP013200.1\|WP_062287591.1\|1973340_1973817_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP013200.1\|WP_062287596.1\|1974845_1975298_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_062287585.1\|1970806_1972381_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP013200.1\|WP_062287563.1\|1959414_1960386_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270225
NZ_CP013200.1\|WP_062287611.1\|1977092_1977890_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP013200.1\|WP_062287560.1\|1957855_1959313_+\|NtaA/DmoA-family-FMN-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|274819
NZ_CP013200.1\|WP_062287571.1\|1963122_1964394_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP013200.1\|WP_062287588.1\|1972578_1973280_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP013200.1\|WP_062287568.1\|1962576_1963098_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP013200.1\|WP_062287566.1\|1960702_1961935_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP013200.1\|WP_062287608.1\|1976514_1977093_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP013200.1\|WP_062287600.1\|1975716_1976124_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|184724
NZ_CP013200.1\|WP_082634173.1\|1966206_1966869_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP013200.1\|WP_062287574.1\|1964482_1965700_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686

Protein	Function_ID	Function_description	E-value
NZ_CP013200.1\|WP_062287604.1\|1976125_1976368_+\|RNA-binding-protein	gnl\|CDD\|179479	PRK02821, PRK02821, RNA-binding protein.	4.32078e-30
NZ_CP013200.1\|WP_062287614.1\|1978139_1978499_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	2.5043e-68
NZ_CP013200.1\|WP_062293298.1\|1962031_1962580_+\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	1.47274e-59
NZ_CP013200.1\|WP_062287583.1\|1968463_1968802_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	2.39731e-46
NZ_CP013200.1\|WP_062287593.1\|1973902_1974784_+\|VOC-family-protein	gnl\|CDD\|225312	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only].	1.33933e-81
NZ_CP013200.1\|WP_062287580.1\|1967105_1968467_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	3.08031e-152
NZ_CP013200.1\|WP_062287591.1\|1973340_1973817_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.37874e-12
NZ_CP013200.1\|WP_062287585.1\|1970806_1972381_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP013200.1\|WP_062287563.1\|1959414_1960386_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270225	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold. This subgroup includes the periplasmic binding component of ABC transporter involved in uptake of mimosine MidA and its similar proteins. This periplasmic binding domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.15843e-61
NZ_CP013200.1\|WP_062287611.1\|1977092_1977890_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	1.91771e-135
NZ_CP013200.1\|WP_062287560.1\|1957855_1959313_+\|NtaA/DmoA-family-FMN-dependent-monooxygenase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	1.27024e-128
NZ_CP013200.1\|WP_062287571.1\|1963122_1964394_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.79033e-61
NZ_CP013200.1\|WP_062287588.1\|1972578_1973280_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.94613e-06
NZ_CP013200.1\|WP_062287568.1\|1962576_1963098_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	4.63513e-15
NZ_CP013200.1\|WP_062287566.1\|1960702_1961935_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	4.67291e-46
NZ_CP013200.1\|WP_062287608.1\|1976514_1977093_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	5.57671e-52
NZ_CP013200.1\|WP_062287600.1\|1975716_1976124_+\|30S-ribosomal-protein-S16	gnl\|CDD\|184724	PRK14520, rpsP, 30S ribosomal protein S16; Provisional.	1.37673e-63
NZ_CP013200.1\|WP_082634173.1\|1966206_1966869_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.19147e-28
NZ_CP013200.1\|WP_062287574.1\|1964482_1965700_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	4.68184e-162

>NZ_CP013200.1|WP_062287583.1|1968463_1968802_+|P-II-family-nitrogen-regulator
MKLITAIIRPEQLDDVRNALESYGVQGLTISSAHGYGRQRGHTEVYRGAEYAVDLHAKVRIEVLASDEVAWDLMDVIVGSSNTGNPGDGKVWMVAVQEVMRVRTGERGVAAI
>NZ_CP013200.1|WP_062287580.1|1967105_1968467_+|ammonium-transporter
MNTGDTAWVLISAALVLLMTPGLAFFYGGMTRAKAVLNMMMMSFGAIGLVGVLWVVFGYSAAFGTDVGGGLLGNPLEKLGLQGVLDTGDGAPLVGTIPEIVFVGFQAVFAIITVALITGAIADRAKFGAWMTFAAIWVTVVYFPVAHWVFSFTEDANGNPTGGWIGQGMGAIDFAGGTAVHINAGAAALALALILGRRKGFGKDPSHRPHNLPFVMLGAGLLWFGWFGFNAGSALGANAVAGYAWINTLAAPAAAILGWLVVEKLRDGHATSLGAASGAVAGLVAITPACSALTPMWSIALGLLAGAVCALAVGLKYRLGIDDSLDVVGVHLVGGLVGTLFIGLAADPNSPAAGQGLFYGGGLELLGKQAIAAGAVMIYSFVIAYAIGWVINKTMGFRISSADEAAGVDVSVHAESAYDFGGRATGSFVPMTEKRSVTSEPATPATTEVKVDA
>NZ_CP013200.1|WP_082634173.1|1966206_1966869_+|response-regulator-transcription-factor
MASRKEKTTTLRMALVGCDYITGLGLSQLLRGADFIDVAGFATGAEEVLELMGAGLIDMVLLDASMEAAELAQTCRSLNQVPVPPTVVVMGDVPFDLAESLVFSGVRAILHQGLLAEDLPVALRMIHRGGALLINSDARETLMNRSRSFDAHQRTRFECLNPRERVVAQGVAEGSTNAQLAGSMHMSEATVKLIVSNIMSKLGVSNRVQIAVAVTKARVV
>NZ_CP013200.1|WP_062287574.1|1964482_1965700_+|signal-recognition-particle-docking-protein-FtsY
MNEFLPIILSIVVGLAVIGGLIPVFLKARRSSQNYIGPRDANDPAPLDSAASGDAQGGGTLVEDRPEPQGPPSDIATPDLETVEPEPEAPAAPSLETPLPVEGRLVRLRARLAKSNNALGKGLLALLSRDTIDENVWEEVEETLLLADIGTDSTMDLVDTLRDRVKVLGVRSPEHVQAMLREELIKLMDPTLDRTLNISRHDDRPAVLMVVGVNGVGKTTTVGKLARVLVAEDKDVLLGAADTFRAAAAEQLATWGARVGVPTVKSDVDGADPASVAFEAVKVGIEQEVDVVMIDTAGRLQNKVGLMDELGKVKRVIEKQATVDEVLLVLDATTGQNGLTQAKVFAEVVNITGIVLTKLDGTAKGGIVVAIQKTLGVPVKLVGLGEGADDLAPFDAESFVDALLN
>NZ_CP013200.1|WP_062287571.1|1963122_1964394_-|MFS-transporter
MSSSKPSSKKPLDLPAVKLPREIKVLVAAAFMIAIGFGIVAPVLPQFAQSFDVSVSAAAVVVSAFAFTRLIFAPLSGWLVERMGERRTYILGILIVAASSAACAFAQNYWQLLLYRGLGGIGSTMFTVAAMGLLIKMAPPAARGRVSSLYSGSFLLGNIAGPAVGGLLAGLGMQLPFLVYACALVLVALLVATQLPAVSALSRRTGAAAGAGGVGAAGATAARKKDALPLRVALGLPAYRAVLASGFANGWSAFGIRMALVPLFATTALGAGSEVAGISLAVFAIGTGVALTFSGKLADTWGRKPMIIAGLAVNGIAMGVLGFTGNEFWFFAVSAIAGLGSGLMGPAQQATVADVIGNERSGGKVLATFQMSSDLGAIIGPIAAGILVDSFSYGPAFLMATAVAFVAVLLWLPAKDTKLLPQS
>NZ_CP013200.1|WP_062287568.1|1962576_1963098_+|NAD(P)H-dependent-oxidoreductase
MRIVGIDASPYGPGKTAAAVQAVLAGAASRGATTELVRHDHPEVVARIGEADAVVLGSPTYRATHTAALRMLLERIDRKAGAEPLAGTPIAIVMTGASGEHFLGTRDLAGTLSGFFGTQVLSPDLYFHGADFDAEGQPGDRAAELCALHGAALAELAAAVGGSTALKALRPVV
>NZ_CP013200.1|WP_062293298.1|1962031_1962580_+|flavin-reductase-family-protein
MVWRDSHERKRHDIPTPVTPTQLRNVLGHFATGLTIITAATPQGPAGFTCQSFTSLSLDPALVTFSPARSSSTWPLLRATGRFAINILPAEHRHLSAQFARSGSDKFAGVAYTDSPLGNPLLDQALAWVDCELHQEYDGGDHTIVVGSVHALEAREQGDPLLFYRGTYGQLHSAPALVGVPA
>NZ_CP013200.1|WP_062287566.1|1960702_1961935_+|LLM-class-flavin-dependent-oxidoreductase
MTNTDAPQSAFTPAGHLQFGVTVLGPGAEVSFEELRTLAQTAERGLFSMLTLDERYWLRGDPGALSATDPVGSNDVATLLAALAAVTTNIGLVAAAAPDYDDPAFLTRRLDSLTRISQDRAAWQVLADGAMYGEEDLTEAAEEALEDNEGALPSGGGRHALIESMRHQWQTWSRAETQGPVELLGAFERDGQKYGVGMGALRRNEPRSGPVLIHGAESAQSLATATELAEVILSEPASLEGALALRREVVARSLRAGRGANEVKIIQAATFIVAPTSEEAIEKADWIREQLPESVWDERAFIGSYADVADLLLDFARSGAVDGFNVMPWLFADELADLVNHLVPALQARGIYPTDYAADTLRGNLGLPDRTVSAPSNTTHALPVIEVGDLGDVRLDLDLRMELIVQKLPA
>NZ_CP013200.1|WP_062287563.1|1959414_1960386_-|ABC-transporter-substrate-binding-protein
MKISIPQSVLTVTVAVSALLGLAACSDPGASTAQIPVSTSGTKTFNLTPDQDRVAVTQDPAAAALVPEAIKKDGKLTVAVTLGAAPLGLYARDNLTPIGNEVDIAVALAQSLGLEAEIVPTAWADWPLGVASGKYEAAITNVTVTEERKLKFDFASYREDKLGFYAKSNSPITKIESAADVAGKKVIVGSGTNQEAILLAWDKENVAKGLAPVDFQYYDDDSASSLALLAGRADLTFGPNPTGAYKAAADGKTKLLGTVDGGWPLQASIAVTTEKGNGFAVAAQAGINHLIAEGSYAKILDIWGLSSEAVKHSELNPPGLPAS
>NZ_CP013200.1|WP_062287560.1|1957855_1959313_+|NtaA/DmoA-family-FMN-dependent-monooxygenase
MSENSEIGNGFVPSGQLQFGVFFQGVNSGTVWKAAESGSQTDFDSFRHLAQTAERGLFAAFFLGEGLRLREHLGRPHALDVAGRPDAQTMLAALAAVTNKIGLVATQNTTYNDPAHLAHRFSSLDLLSGGRAAWNVVTTDNAWTGENFRRGGYLDHTDRYRHAEAFVETAKRIWDSWAQDAIAESETAAAWSAPGSIREVSHAGQHYTVEYAPGLPRSAQYRPVLFQAGDSPEGRDFAARQADVIFSAHPAYAPALDFRRDIVARTVKAGRGPNDVQIMPASEFILAATAQEAVDKKAWVRSQQIGPQQAIAYLEQFWGRELSEYDPDGPLPEIDPVVVETSETRGSGFHGAKARQLADQWRAESKDKGQSIRAFVSGKTSRVDATFTGSYTDIADTLARYAKSGAVDGFNISPWLVPTGLDDIVNHLVPELQARGVYPTEYAGTTLREHLGLPVPVRPEVQSEQGGETTAAEVSLQLAVAAQQL
>NZ_CP013200.1|WP_062287585.1|1970806_1972381_+|signal-recognition-particle-protein
MFNSLSDRLTATFKNLRGKGRLSEADVDATVREIRRALLDADVAVPVVRAFTAKVRERALGSEVNDALNPAQQIVKIVNEELVAILGGETRRINLAKNPPTVIMLAGLQGAGKTTLAGKLSKWLKGQGHSPLLVAADLQRPNAVKQLQVNGERAGVPVFAPHPGVSSEFESATGDPVAVAMAGLAEAKSKLHDVVIVDTAGRLGIDAELMKQAADIRAAINPDEVLFVIDAMIGQDAVNTAQAFNEGVNFTGVVLTKLDGDARGGAALSVASVTGKPVMFASTGEGLDDFELFHPDRMASRILDMGDVLTLIEQAEKNWDKGEAERMAQKFADQEDFTLDDFLSQMQQIRKMGSMKKMLMMMPGAAGMRQQLENFDEREIDRVEAIVRSMTQHERVAPKIINGSRRARIAKGSGVHVSEVNGLLERFGQAQKMMKKMAQGGGIPGMPGVAGPGGFNSARKGKQGAKKKARSGNPAKAAAELKAAQEKASAPKALPTGAAFGAGAQDFDPSSLNLPKGFEKFLGK
>NZ_CP013200.1|WP_062287588.1|1972578_1973280_+|alpha/beta-hydrolase
MSKTRIVFVHGMDSYGAAAWPAQHLLAGHYDCLFLKRTGFDAVAPVAATDFAADANIVIEALGHGGHVVAHAQGAVAAMMAAVQRPDLVRSLVLIEPLLPSLTAELPASAAYSQRVAELFARSAKLGDAEFLMEFNTLLAVTTAGAAEPVARRAARARLQLPSSAAPLLIIAGVPTLVLTGGWEPLYEEVAGYLESTGAKHVVLRSGHRPHDTAAGAAQIEQFIEATERSAVH
>NZ_CP013200.1|WP_062287591.1|1973340_1973817_+|GNAT-family-N-acetyltransferase
MLEIRPAALPEFALLPAIEAEADAAFEALDPPISIADFPAPDSAQDYADAFHIMVAGRPPAGFVRLEIVDGQAHMAQLSVSPQYARQGIGRQLVNAAIAWAAEAGFHSMTLTTFAHIPFNGPFYTSCGFSELPHEQWTAELAELRHHEAFWTPREPGS
>NZ_CP013200.1|WP_062287593.1|1973902_1974784_+|VOC-family-protein
MTVQNDLLSADLTMGTVMLKVGDMTLMSNYYQKALGLDVVAEADGGQYLGRGNTPLVHLQPAGGLHIPGRGEAGLFHTALLFDDQASLAATVATAAQYSPQAFAGSADHLVSEAFYFTDPEGNGIELYWDRPRDAWTWSNGEVDMDSLALSPQHYLQQHLTEEAVVGQRQSAADIGHVHLQVGDIKTAESFYVDTLGFEKTSGFHGQALFVSAGGYHHHMAMNVWNSRGAGPRKDTLGLGEVLIQLPGKDDVGALAQRLTHHGIAVANTGAELRFDDPWMNKIRVSVGSGQSV
>NZ_CP013200.1|WP_062287596.1|1974845_1975298_+|hypothetical-protein
MANYSEFFIADHHQAVARAKARQSGKSPQIDVPVLPTPGLSDFEIEVLGELAVKKVHATGVAAELSLVDIELDTLFAVPDALLEVFAELNAPEDPEEVVELAAQWAAAEEMESTPEVTEPLLRALTAMAAAALSAAENNAKMGLFYYSAE
>NZ_CP013200.1|WP_062287600.1|1975716_1976124_+|30S-ribosomal-protein-S16
MAVKIRLKRFGKMRAPYYRIVVMDSHSKRDGRAIEEIGKYHPTENPSFIEVTSDRAQYWLSVGAQPSEPVAKILKITGDWQKFKGIKGAEGTLKTKAPKVAFVAPEAKNVVIKEAITKKAKKADEAEATESTEAE
>NZ_CP013200.1|WP_062287604.1|1976125_1976368_+|RNA-binding-protein
MLAEALEHLVRGIVDSPEDVKVSVKNNRRGESLEVRVHQDDLGRVIGRQGRTARALRTVVAALANGESVRVDVVDTDRRH
>NZ_CP013200.1|WP_062287608.1|1976514_1977093_+|ribosome-maturation-factor-RimM
MQVQVARIGKPHGIKGEVTVLVLTDAPDSRFAVGSEFVVEPAKLGILTVKSSRWNKDILLLGFEGTNTRNDAELLRGATMFFESDDDEDDDAWYEHELLGLEVRVGTNKVGKVTGLRTQAVQDLLIVEDTEGDEVLVPFVDEIVPEVNIEEGYVLLTPPAGLFTVNKDAAENDESGEAADLDGADGSKGSPE
>NZ_CP013200.1|WP_062287611.1|1977092_1977890_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MRFDVVSIFPEYLAPLDLSLIGKARTEGLLELVVHDLRSYTADRHRTVDDTPYGGGAGMVMKPEPWAMALTDIAASSPAPDGVLPTLIVPSPAGEVFNQALAYELAETEHLVFACGRYEGIDERVLEWAADDYIVRPVSLGDYVLNGGEVAVLAMVEAIGRLVPGVVGNPESLIEESHSDGLLEYPVYTKPSVWRDREVPDVLLSGNHGKIAKFRKELQLRRTADRRPDLIDVLDVSKFSKADRNVLWELGYAVVDGKAVRREDD
>NZ_CP013200.1|WP_062287614.1|1978139_1978499_+|50S-ribosomal-protein-L19
MQILDSVDAASLRSDIPAFRAGDTVNVHVNIIEGSRSRVQLFKGFVLGRQGDGIRETFTVRKVSFGVGVERTFPVHSPVLDKIEVVTKGDVRRAKLYYMRNLRGKAAKIKEKRDNLPTK

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Crispr_ID: NZ_CP013200_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013200_5

2250230-2250307

Orphan

Consensus_repeat	Method
CCCAAACGAGCTTGCGAGTTATGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013200_5

>merge|NZ_CP013200|5|2250230-2250307|CRISPRCasFinder
CCCAAACGAGCTTGCGAGTTATGGGGGAGAAGCGTAGCGGTAGCGCTAGGGGCCCAAACGAGTTTGCGAGTTATGGGG

>NZ_CP013200|5|5|2250230-2250307|CRISPRCasFinder
CCCAAACGAGCTTGCGAGTTATGGGG	GAGAAGCGTAGCGGTAGCGCTAGGGG
CCCAAACGAGTTTGCGAGTTATGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013200.1\|WP_160320820.1\|2250323_2251151_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238861
NZ_CP013200.1\|WP_062288161.1\|2244075_2245758_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP013200.1\|WP_062288170.1\|2247449_2248118_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_082634208.1\|2248254_2248848_-\|globin	unknown	unknown	gnl\|CDD\|381280
NZ_CP013200.1\|WP_062288179.1\|2251301_2253863_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|274121
NZ_CP013200.1\|WP_062288167.1\|2246961_2247450_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP013200.1\|WP_062288156.1\|2240057_2241518_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP013200.1\|WP_062288164.1\|2245918_2246824_-\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|224857
NZ_CP013200.1\|WP_062288185.1\|2255139_2256135_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_062288196.1\|2260791_2261466_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|237133
NZ_CP013200.1\|WP_062288182.1\|2254094_2255135_+\|DUF1648-domain-containing-protein	unknown	unknown	gnl\|CDD\|377929
NZ_CP013200.1\|WP_082634210.1\|2260138_2260759_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
NZ_CP013200.1\|WP_062288199.1\|2261654_2262941_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP013200.1\|WP_062288158.1\|2242810_2243419_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
NZ_CP013200.1\|WP_062288193.1\|2258491_2259862_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP013200.1\|WP_062288173.1\|2249722_2250205_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224678
NZ_CP013200.1\|WP_082634518.1\|2248873_2249665_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NZ_CP013200.1\|WP_062293352.1\|2243711_2243981_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_062288191.1\|2256797_2257895_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223344
NZ_CP013200.1\|WP_062288188.1\|2256227_2256701_+\|ribose-5-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235509

Protein	Function_ID	Function_description	E-value
NZ_CP013200.1\|WP_160320820.1\|2250323_2251151_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238861	cd01823, SEST_like, SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.	3.86182e-39
NZ_CP013200.1\|WP_062288161.1\|2244075_2245758_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP013200.1\|WP_082634210.1\|2260138_2260759_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	5.63342e-114
NZ_CP013200.1\|WP_082634208.1\|2248254_2248848_-\|globin	gnl\|CDD\|381280	cd14771, TrHb2_Mt-trHbO-like_O, Truncated hemoglobins, group 2 (O); Mycobacterium tuberculosis hemoglobin O like. The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. TrHbs are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). This group includes a Mycobacterium tuberculosis TrHb2, Mt-trHbO, encoded by the Mycobacterium tuberculosis glbO gene, which is expressed throughout the Mycobacterium growth phase. It also includes a TrHb2 from the thermophilic Thermobifida fusca ( Tf-trHb) which has a high thermostability and at the optimal growth temperature for Thermobifida fusca (between 55 and 60 degrees C ), it is capable of efficient O2 binding and release. Tf-trHb shares a relatively slow rate of oxygen binding with Mt-trHbO.	8.16474e-62
NZ_CP013200.1\|WP_062288179.1\|2251301_2253863_-\|aminopeptidase-N	gnl\|CDD\|274121	TIGR02412, Aminopeptidase_N, aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).	0
NZ_CP013200.1\|WP_062288167.1\|2246961_2247450_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	1.15662e-27
NZ_CP013200.1\|WP_062288156.1\|2240057_2241518_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	5.69231e-45
NZ_CP013200.1\|WP_062288164.1\|2245918_2246824_-\|acyl-CoA-thioesterase-II	gnl\|CDD\|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	7.00445e-105
NZ_CP013200.1\|WP_062288196.1\|2260791_2261466_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|237133	PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed.	2.86477e-122
NZ_CP013200.1\|WP_062288182.1\|2254094_2255135_+\|DUF1648-domain-containing-protein	gnl\|CDD\|377929	pfam07853, DUF1648, Protein of unknown function (DUF1648). Members of this family are hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and in fact many of these sequences contain a high proportion of hydrophobic residues.	0.00564748
NZ_CP013200.1\|WP_062288199.1\|2261654_2262941_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_CP013200.1\|WP_062288158.1\|2242810_2243419_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	6.32729e-22
NZ_CP013200.1\|WP_062288193.1\|2258491_2259862_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	3.03829e-134
NZ_CP013200.1\|WP_062288173.1\|2249722_2250205_-\|OsmC-family-protein	gnl\|CDD\|224678	COG1764, osmC, Organic hydroperoxide reductase [Secondary metabolites biosynthesis, transport and catabolism].	1.34141e-18
NZ_CP013200.1\|WP_062288191.1\|2256797_2257895_+\|hypothetical-protein	gnl\|CDD\|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	5.16966e-36
NZ_CP013200.1\|WP_082634518.1\|2248873_2249665_-\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	2.66014e-22
NZ_CP013200.1\|WP_062288188.1\|2256227_2256701_+\|ribose-5-phosphate-isomerase	gnl\|CDD\|235509	PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional.	2.22808e-73

>NZ_CP013200.1|WP_062288173.1|2249722_2250205_-|OsmC-family-protein
MGLNQHHYEININWTGNRGTGTSAYNAYGRDHTVTAVGVPVLLGSADKTFHGDRDRWNPEQLLLTALAQCHMLSYLHVALKHGVVVTKYEDCANGTLILNPDGSGQFESATLHPKVYVADPATTDLALSLHAEAASQCFIARSVNFPVHHEPGLLTATQD
>NZ_CP013200.1|WP_082634518.1|2248873_2249665_-|mechanosensitive-ion-channel
MQGRSRVQAANFLGEANNTFLNHLALAGITIAIGVAVWLVLHYLIRIVVKRARADRAPLEHRTLRWAAPMLRNLDPVVRALENERRVQRARTIGTLLNSVLTIVVAVVTSFYVLIAFEIDIAPLLASVGVVGIAIGFGCQQLIRDFLAGIFIAIEDQYGIGDVIQTSEVIGTVEYVSLRITRVLGEDGTLWYLRNGEILRLGNRSKGSYTAPAIDTDDGVSPAPAADAAGAASAQGAGPASNLNSAPNLRGAASASNANESTE
>NZ_CP013200.1|WP_082634208.1|2248254_2248848_-|globin
MSSEYTPTSPFANGPAANDAAEKTATEGTAIPSRFGEPLATLLPIPTTVGRPLPSTSVPAADEPVDYSDTFYGQVGGHETFKKIIHVFYQGIAADPLLRAMYHEEDLGPAEHRMLMFIEQYWGGPRTYLEERGHPRLRMRHVPFAVTPEARDRWLAAMRKGVDAGELSPMHEATLWDYMERAAHSLVNAPSDPTQAL
>NZ_CP013200.1|WP_062288170.1|2247449_2248118_+|hypothetical-protein
MSTALHTQEFDLADAGTVADLRTFVTRARNADDGAIRLQGAGHVLAAYVCVMRGKLLGEGTPTILGLRTMALGTPSDIDVTVSLSAVADRLARMDEGDAKLPVPPMTVQESWTGISAPRSAWEEIGTISADELIAVAKSGVQEIGQIIPVNPGALLVNNVRASVWGRPMDGVPGEIPGGAAFAAYALGFVAPGESGTIYSSHRWLRISTNRGHILVKPASLL
>NZ_CP013200.1|WP_062288167.1|2246961_2247450_+|acyl-CoA-thioesterase
MAPGFQHSQQIRFGDIDSYNHVNNVVYLQYLEDARVQLTYAELPGGGTFQDLIGTELFILVGRNEIEYLAPISFRTEPVYVNIWVTNVGGSSFDFGYSVSEADTSIIYAQAATSMVLVSRSTGRPIRLTQEQRSALEAWRGDPVPFKRSPARPVIKTAEGNR
>NZ_CP013200.1|WP_062288164.1|2245918_2246824_-|acyl-CoA-thioesterase-II
MNVTPSATNPMETLLRMLDLSDAGGAQTDEDVFVGLGDASAPRPRLFGGQVLAQSIMAAARTVGEDQLVHSMHGYFLRPGDAASPLTFGVQRLRDGRSFAARRTHAYQSGVPILSLIASFQRPDTGMEHQEPMPSGIVAPETLPTSAELLGGIDHPVARAWAYERPFDIRHIGHNIYFDVKGEHVAHTAVWLKTLGPMPADQNLHRAALAYASDYTLLEPSLRRHGINWATPGISVASLDHAMWWHRPVQVDDWLLYVAESPSASEARGLNLGRFYTRDGVLVASVAQEGMIRIPEGTPHD
>NZ_CP013200.1|WP_062288161.1|2244075_2245758_+|energy-dependent-translational-throttle-protein-EttA
MAEFIYTMSNARKAVGEKLILDNVSMSFYPGAKIGVVGPNGAGKSTILKIMAGLDTPSNGDARLSPGYTVGILLQEPPLNEEKTVLGNVQEGVGEIYSKIQRYNEISEEMASPDADFDTLLEEMGKLQEAIDTADAWDIDSQLEQAMDALQCPPGDSDVTLLSGGERRRVALCKLLLQKPDLLLLDEPTNHLDAESVNWLEQHLKSYAGAVLAVTHDRYFLDHVAEWIAEVDRGHLYPYEGNYSTYLEKKRARLEVQGKKDAKQAKRLTEELEWVRSNAKGRQTKSKARLARYEEMAAEADRTRKLDFEEIQIPPGPRLGGIVLEAENLKKGFGDRILIDGLSFTLPRNGIVGVIGPNGVGKSTLFKTIVGLEELDGGNLKVGDSVKISYADQSRGGIDPDKTLWEVVSDGLDFIQVGQVEMPSRAYVAAFGFKGPDQQKKAGVLSGGERNRLNLALTLKQGGNLLLLDEPTNDLDVETLSSLENALLEFPGCAVVVSHDRWFLDRIATHILAYEGTNENPANWHWFEGNFDSYEENKVERLGAEAARPHRVTHRRLTRD
>NZ_CP013200.1|WP_062293352.1|2243711_2243981_+|hypothetical-protein
MTASLQKLASATKSPNREQMMAAMLEAGAVKEKVELSIDITPTGLAVDAVESATLVGKECVIGQVRDGSVAVTTLPVLASGLCFVGDTH
>NZ_CP013200.1|WP_062288158.1|2242810_2243419_+|single-stranded-DNA-binding-protein
MANYISLRGFVSSDITMSTTDSGLVIAKFRMGSNTRQQDPITNQWVDGKTNWFQVSAFRALATNAMISIHKGNRIVVTGKLKVTSYLRKDGTPGNGVDIEADSIGLDLNFGNVTYHRTPSNSQNNGASGAEHAGGSVPPDIDEGEFPNQDPEDADTTDGGDNGDGDQTDDGGDDERSAAQGLQEGEHANEDTGEILVDAAPY
>NZ_CP013200.1|WP_062288156.1|2240057_2241518_-|DNA-cytosine-methyltransferase
MRVFPIIDLFAGPGGLNEGFSSVKNDDGDYAFKTLASLEMDSFACQTLRLRATYRELVRTGSDLEPYFAYISGEKTWPETLRGDFKTAYTAAKQHVYRVELGEENRPEVDRHIALKLGPESQRGHWALIGGPPCQAYSLAGRSRRTGDETFASDHKHFLYREYLHILSKFRPTIFVMENVKGLLSSKNGDKSMFQTILADLTRLSSGARYEIRSLVVDADPDELEPSDFIIRSEEYGVPQKRHRVILLGIRSDVAHMIPRQVLTKADGAVTVRAALRGMPRLRAETSNRKPKIDQDWKAVQAKALQDVRAVEVTAKPDSAKNGSIAVAAYEAWVRESELALPVQNNPRAHMVSDLARYRVMAELADRIGKSPKYTDLPQSLHPEHRNIGKAGTPFTDRFRVQVWDSPATTVVSHISKDGHYYIHPDPSQARSFTVREAARLQSFPDNYFFEGPRTQQFHQVGNAVPPLLSKQIGELVAGMLQKLKD
>NZ_CP013200.1|WP_160320820.1|2250323_2251151_-|SGNH/GDSL-hydrolase-family-protein
MGIHNFKGFVARTGAVALLSIGMIAGFAGAPATAQTHTASTTISYSVMGDSYSAGSGGGDEFGGCGQSVNGYGTWVAASLGTQFSNLACAGFTTEQVRTLEVPLLAPNTTLITLTAGGNDIGWTAAIAACLAPTSTEAVCKSAVANSVSLMKNLPKSVTSMLKAIKAKAPGARVLYLGYPRLFEPQNMAALGYTPTQISGTKTLNAAADLLNGVLALSALSNRTAFVPVAYLFRGHGVPSSSPWLTYPGGPNPFAFHPNADGYRYGYAAALRPFL
>NZ_CP013200.1|WP_062288179.1|2251301_2253863_-|aminopeptidase-N
MNLTRAEAIERTATLSVSSYDVTLDLTTSESTFASTTTVRFSAKEGSSSFIDAVTKTVHQVTLNGVELDPAEVSDGVRIQLPKLAAENELTVKADALFMNTGEGLHRFVDPVDGEVYLYSQFEVPDSRRMFAVFEQPDQKAEFTFHITAPSHWDVISNSPTPVPVAAGEVDGVKRSVWHFEPTLKMSSYITALIAGPYECVRGELTSSNGRIVPLGVFARKSLMEFLDAENVFELTRQGFEFFEKQFGVPYPFPKYDQLFVPEFNAGAMENAGAVTFLESYVFRSKVTDAMVERRAITILHELAHMWFGDLVTMRWWNDLWLNESFAEFMSTLAAAENTQYVDAWTTFSSLEKSWAYRQDQLSSTHPIKAEINDLEDVLVNFDGITYAKGASVLRQLVAWVGQEEFMAGVRAYFAKHAWSNTELPDLMVELEAASGRDLSSWTEKWLETAGVNTFKPALEVSDDGVITSFSIAQSAVAQHPTLRPHRAAIGFYDLATSGADSGKLVRTHRVELDIDGPTTDVPELVGMKRPALILLNDDDLAYAKIRLDEVSLATAKAHLQDFRDSLPRTLVSASAWDAARDGETPARDYVEFVLATIGSETDSTVIMVLLRQLATALHYYVAPAHQKATAIAAADSVWELAQNAAAGSDAQLQFVKAFAGHAQSAAQLDVVQALLDGEQQLDELALDTDMRWEFLISLAAGGRADASVIEAALALDNTQNGQLAAATAHAAIPTAEGKAATWESVVVRGEGANALQRAAIDGFTKVWDTSLLEPYVAKYFAAIQELWESKSYETASSMITGLYPSQLVSQTTLDATDAFLDALSPDVPALRRLLTESRDTVVRALRAQAADV
>NZ_CP013200.1|WP_062288182.1|2254094_2255135_+|DUF1648-domain-containing-protein
MGKQVRSIDAEKAYNRRWLLGLIVGLLLLSVLGSLWMFTVASRLPPELAIHWNSKNEVDGWTSLWGIAVTTVLTAVGVGGVIAVLAVVSRGQNLLIARIGAGVGVGFGVGLATLMVAVVAGQIDLMDTTQAEVSGPVMAAGLALALILGVLVMWLYTPGELDRTPDAEVLAVNASATEEGSALALDGAERAAQGETMRISVSMGKWAWVLSVGLGATVAVSTYFIFPVLALLGVVIGAITWVFCQGTAVIGPDGVKVLASGFFKLMPLEWKEVRGASVDDIKAMDYGGWGYRMNGGSVAFIMSSGPALVMECGFHQKFVISMPDAQSAGEAAALVNGYAQSRKVKN
>NZ_CP013200.1|WP_062288185.1|2255139_2256135_+|hypothetical-protein
MARDSRDKSSSERHLDVQALRFSLVFPGLLAVGLILGGLMLAAKLPAGVVLPLGGNPVPVSVFLGVGVASIILVGVGLGSQGARTTLPRMLRRIVLGLAVALQLSVFTLFVAALLGQGARGQLTPERVDNYVLLMGCGLALAMGVVLALTFKPDEQWTSADDGAFAALLSAEADPQAAKDQLHYFLHPRSSVVIMILLAAIMPGAFLALISPWILLALVVAALLAIAMLCATVQVDRERLIVKILGFIPVLVAPCEGLDAAVSLDIVAGDYGGWGLRKHSGSATYLTRSGAAVVLRANDGGKVVVGAPNLDVADELSEILNRRAGKTPQQR
>NZ_CP013200.1|WP_062288188.1|2256227_2256701_+|ribose-5-phosphate-isomerase
MRVHIATDHAGMELSAHLITALSAKGYEMIDHGPQAYDAEDDYPSFCINAALAVVADQAAGVDALGIVLGGSGNGEQIAANKVKGVRAALAWNLSTAQLAREHNDANVVAVGGRQHSVEEATEIIEAFLAEPFSDAERHVRRIGKIATYETTGDVVE
>NZ_CP013200.1|WP_062288191.1|2256797_2257895_+|hypothetical-protein
MPEGHSVHRLARQFSDVFAGAALAVSSPQGKFAAGALLLDGQVLERAEAHGKQMFLYFTHDLVMRVHLGLYGAWDFGGDSTFTGASSIGAPRRIGEREIVGDRGWAHASEGPAANLRAGGGRGWAHASEGPAANLRAGGGRGDYHGPPVPKGAVRVRLVSDHGWADLRGPTACEVITPAESEAVRRRLGPDPLNNVPGDAQEFARRIRKSSTSIALQLMKQEVLAGVGNVYRAEVLFRLGLDPLMPGKSLQADEAQALWGDIGRIMADGVRDGRIITTELCDRPTGVGLEVGHGLRERTVSGFAASSVVAANSAMASATNKDVPVDDAHYVYKREGRPCRHCGTEIAMKELGGRKLYWCPGCQGR
>NZ_CP013200.1|WP_062288193.1|2258491_2259862_+|trigger-factor
MKSAVETLTPTRVKLDVEVSFEELKPSITEAYKTIGTQVQVPGFRKGKVPNTLIDQRVGRGYVLETAINSGLNGWYQEAVVENKLVPLSRPEVEITEVPDPTGTDGVVKFHVELDIRPEIELPNYEGIEVEVAAVEASDEDTDKALDELRGRFGTLKAEDRPAVDGDFLTINIAAKIDDVEVDSASDLSYQIGAGNMLDGLDEAATGLSAGEEAIFTTKLAGGEHAGEEAQVNLKVTSVKVRELPEANDDFAQLASEFDTIAELKEDLAKQAAESKTVEQGVEARDKVLEKLVALVEVPVPDSVIADQLEQHFKPENSHGPEEHDTEEHRAEVKENTEKAFRNEIILDAIAEKEEVSVSQAELIDYIVSSASQYGMEPNQFAQMLDSSGQVNMIVGEVRRRKALAAVLAKATVTDSEGAAVDLTDFVSVAAEEEEVASEDEVIEATAVSDPGEARI
>NZ_CP013200.1|WP_082634210.1|2260138_2260759_+|ATP-dependent-Clp-protease-proteolytic-subunit
MAQHNTPTMASADPSGSDQYIYNRLLKERIIWLGSEVRDDNANLICSQLLLLSAEDPEKDIYLYINSPGGSVTAGMAIYDTMEFIPNDVVTVATGLAASMGQFLLSSGTKGKRYATPNARILMHQPSGGIGGTASDIKIQAELILHMKKVMAELTAEQTGQTVEKILTDNDRDKWFTAEEALAYGFFDKISRHAGSVAGGGGTHAK
>NZ_CP013200.1|WP_062288196.1|2260791_2261466_+|ATP-dependent-Clp-protease-proteolytic-subunit
MTYNFGSTAFGKTAGNLPTSRYVLPQFEERTPYGFKRQDPYTKLFEDRIIFLGVQVDDASADDVMAQLLVLEADDTDRDITLYINSPGGSFTAMTAIYDTMQFIRPEIQTVCLGQAASAAAVLLAAGAPGKRLALPNARVLIHQPALSGGQGGQASDLEIQANEVMRMREWLENTLADLSGRTPEQVSNDIERDNILTAAAAKEYGLIDEVLAPRKMKAAAITR
>NZ_CP013200.1|WP_062288199.1|2261654_2262941_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MARMGESTDLLKCSFCGKSQKQVRKLIAGPGVYICDECIELCNEIIDEELSEVADLDAFELPKPREIFDFLQEYVIGQEPAKRSLAVAVYNHYKRIQSGHAVKSTTISGGVHDEVEIAKSNILLVGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADFDIKKAEQGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEEIIGSRAGKKGIGFGAPLSALKQTEASYADVMPEDLLKFGLIPEFIGRLPVITTVTQLDRTALIQILTEPKNALVKQYQKMFTLDGVDLEFDDEALTAIADLALNRGTGARGLRAILEEVLQPVMFDLPSREDIATVVITAEVVGKKAEPTLIPHEVVAKRRNKSA

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Crispr_ID: NZ_CP013200_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013200_6

2508206-2508330

Orphan

Consensus_repeat	Method
TCGCAAGCTCGCCGCGGGTCCCTCGCGGTTGTGGGCCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013200_6

>merge|NZ_CP013200|6|2508206-2508330|CRISPRCasFinder
TCGCAAGCTCGCCGCGGGTCCCTCGCGGTTGTGGGCCCAACGTGCCAGCCTGGCAAGCGTGGGCCCACCCAAGTACTAGCCGCCGTTCGCAAGCTCGCCGCGGATCCCTCGCGGTTGTGGGCCCA

>NZ_CP013200|6|6|2508206-2508330|CRISPRCasFinder
TCGCAAGCTCGCCGCGGGTCCCTCGCGGTTGTGGGCCCA	ACGTGCCAGCCTGGCAAGCGTGGGCCCACCCAAGTACTAGCCGCCGT
TCGCAAGCTCGCCGCGGATCCCTCGCGGTTGTGGGCCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013200.1\|WP_062288689.1\|2518229_2519045_+\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP013200.1\|WP_062288675.1\|2511934_2512858_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NZ_CP013200.1\|WP_062288678.1\|2513881_2514862_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NZ_CP013200.1\|WP_082634233.1\|2512860_2513925_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NZ_CP013200.1\|WP_062288672.1\|2511036_2511801_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|238519
NZ_CP013200.1\|WP_062288663.1\|2508428_2510492_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP013200.1\|WP_062293472.1\|2507516_2508185_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP013200.1\|WP_062288650.1\|2497053_2498418_+\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|225428
NZ_CP013200.1\|WP_062288657.1\|2501129_2503067_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013200.1\|WP_082634231.1\|2499327_2501133_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013200.1\|WP_062293476.1\|2515858_2516866_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP013200.1\|WP_062288682.1\|2514970_2515594_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NZ_CP013200.1\|WP_062288643.1\|2491146_2491845_+\|PIG-L-family-deacetylase	unknown	unknown	gnl\|CDD\|225031
NZ_CP013200.1\|WP_062288653.1\|2498414_2498918_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|379152
NZ_CP013200.1\|WP_062288648.1\|2495875_2497054_+\|dimethyl-sulfone-monooxygenase-SfnG	unknown	unknown	gnl\|CDD\|274923
NZ_CP013200.1\|WP_082634232.1\|2503528_2506468_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP013200.1\|WP_062288667.1\|2510667_2510970_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP013200.1\|WP_062293467.1\|2503084_2503453_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP013200.1\|WP_062288646.1\|2493036_2493609_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NZ_CP013200.1\|WP_062288686.1\|2516879_2518118_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613

Protein	Function_ID	Function_description	E-value
NZ_CP013200.1\|WP_062288689.1\|2518229_2519045_+\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.19949e-134
NZ_CP013200.1\|WP_062288675.1\|2511934_2512858_+\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.32421e-152
NZ_CP013200.1\|WP_062288678.1\|2513881_2514862_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	5.99641e-124
NZ_CP013200.1\|WP_082634233.1\|2512860_2513925_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	1.98759e-89
NZ_CP013200.1\|WP_062288672.1\|2511036_2511801_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|238519	cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.	1.81676e-100
NZ_CP013200.1\|WP_062288663.1\|2508428_2510492_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP013200.1\|WP_062293472.1\|2507516_2508185_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	7.38306e-53
NZ_CP013200.1\|WP_062288650.1\|2497053_2498418_+\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
NZ_CP013200.1\|WP_062288657.1\|2501129_2503067_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.85904e-179
NZ_CP013200.1\|WP_082634231.1\|2499327_2501133_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.35909e-161
NZ_CP013200.1\|WP_062293476.1\|2515858_2516866_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP013200.1\|WP_062288682.1\|2514970_2515594_+\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	4.88889e-86
NZ_CP013200.1\|WP_062288643.1\|2491146_2491845_+\|PIG-L-family-deacetylase	gnl\|CDD\|225031	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown].	6.59345e-33
NZ_CP013200.1\|WP_062288653.1\|2498414_2498918_+\|CoA-binding-protein	gnl\|CDD\|379152	pfam13380, CoA_binding_2, CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.	5.75743e-52
NZ_CP013200.1\|WP_062288648.1\|2495875_2497054_+\|dimethyl-sulfone-monooxygenase-SfnG	gnl\|CDD\|274923	TIGR04021, LLM_DMSO2_sfnG, dimethyl sulfone monooxygenase SfnG. This family of FMNH2-dependent members of the luciferase-like monooxygenase (LLM) family includes SfnG, a monooxygenase that converts dimethylsulphone (DMSO2) to methanesulphonate. This step can be followed immediately by methanesulfonate sulfonatase (an alkanesulfonate monooxygenase - see TIGR03565) for the FMNH2-dependent conversion an inorganic form. [Central intermediary metabolism, Sulfur metabolism].	0
NZ_CP013200.1\|WP_082634232.1\|2503528_2506468_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP013200.1\|WP_062288667.1\|2510667_2510970_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.65675e-08
NZ_CP013200.1\|WP_062293467.1\|2503084_2503453_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	9.22029e-28
NZ_CP013200.1\|WP_062288646.1\|2493036_2493609_-\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	2.39535e-38
NZ_CP013200.1\|WP_062288686.1\|2516879_2518118_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	1.83913e-180

>NZ_CP013200.1|WP_062293472.1|2507516_2508185_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MALYDATRLLTRGTIAAVCRPTVEGLENVPTDGPFIVAPNHLSFFDSVIVQALTPRPVSFFAKAEYFTGKGVKGKLMKSFFESVNSIPVERGEQAASVQALKTLLDILGRNEGVGIYPEGTRSRDGILYRGRTGVGWLALTTGAPVVPVGIIGTEKLQPAGSKGFRPARFTLRFGKPLYFDKTGPDHSLPARRLVTDTIMDAIAELTGQERSTKYNQSPVVE
>NZ_CP013200.1|WP_082634232.1|2503528_2506468_+|excinuclease-ABC-subunit-UvrA
MWRTLATCSGSAVDCYAKEIMAQSATPVNAARPDLSRLIVKGARENNLRNVDLDLPRDSMIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQVDKPDVDFIEGLSPAVSIDQKSTSKNPRSTVGTITEIYDYMRLLWARVGTPHCPVCGEPIAKQTPQQIVDQLLEMPEGTRFQILAPVVRDRKGEFVELFKELTAKGYSRAKVDGEQVQLSDPPKLKKTFKHTIEVVVDRLVVKDGIQQRLTDSVETALGLADGRVLAELVDLDAGDDGRIRSFSENLACPNEHPLAIDEIEPRSFSFNNPFGACSACSGIGTKLEVDEELVVPNPFLSLREGAIAPWSLGTATTEYWNRLLEGLATELDFKMETPWNKLDTDSRTAILYGKDHKVVVQYKNRFGRERKYSTGFEGAIQYIHRKHGETESDSARDRYEEYMRQIPCPACGGARLNPASLSVLINDKNIAEVCALSMRDCFDFLSNLVLTGREAQIASQVLKEIQARLKFLLDVGLEYLNLERASATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIGTLTRLRDLGNTLIVVEHDEDTIKEADWIVDIGPGAGEHGGEVVHSGSLPDLLANTRSLTGDYLSGRKSIALPAKRRKYDKARELAVIGARENNLLNIDVKFPLGVLTAVTGVSGSGKSTLVNEILYKVLANKLNGAKQVAGRHLRIDGLEHLDKVVHVDQSPIGRTPRSNPATYTGVFDNIRKLFAETNESKMRGYQPGRFSFNVKGGRCEACTGDGTLKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIADVLNMPIEEGADFFAAFTPIARHLRTLVDVGLGYVRLGQASTTLSGGEAQRVKLAAELQKRSNGRSIYVLDEPTTGLHFEDIRKLLLVLQGLVDKGNTVIVIEHNLDVIKSADWIVDLGPDGGTGGGRVVATGTPEKLAKNKESHTATFLREVL
>NZ_CP013200.1|WP_062293467.1|2503084_2503453_+|GntR-family-transcriptional-regulator
MRRWRLDLESTVPPFEQVRLRILDLASSGELAVGTKLPSVRALAGDLGVAANTVARAYRELEQAGIVITAGRSGTAIASGGDKIAAQVADAADSYAAVVRDLGMPRTQALRIVSAALERNNG
>NZ_CP013200.1|WP_062288657.1|2501129_2503067_+|ABC-transporter-ATP-binding-protein
MTMMRGGRGGGPPQKAISFGPSLKRILGLMAPDKLRITLVVIMAAISVGLSVVAPKILGNATDIIFDGVVGKMLGQFPAGTTKAQAVAALHAQGQGQLADMLNAMNVVPGQGMDLAALGQVLVIVLSLYIAAFFFNWGQGFVTTGIVQRAMYRLRRDIEAKLDRLPMSHFQEESRGDVLSRVTNDIDNFSQTLNQTLTQILIAVLTVCGVLAMMFSISPLLAGISLVTVPIIAVITIMIAKRSQVQFAAQWKSTGELNGHVEEMFTGHEIVKAFGQQKQAIEKFRVSNDSLYESSAKAQFISGIIMPSTNFISNLNYVVVAVLGGIQVAQGVLTIGSVQAFIQYSRQFSQPMAQIASMINLLQSGVASAERVFDLLDATEQTPDHVPAAKLAKPKGRVVFDHVNFGYKPGEPLIKDLSLVAEPGETVAIVGPTGAGKTTLVNLLMRFYEIDSGTITVDGVNTAHLSRDDLRSQFGMVLQDAWLFGGTIRENLAYGKLGATEEEIVEAAVATHVDHFVRSLPDGYDTVLADDGGGLSQGQRQLMTIARAWIANPGILILDEATSSVDTRTEVMIRQAMNKLRANRTSFVIAHRLSTIRDADLILVMDSGRIIEQGSHDVLLAHRGFYYDLYMSQFGDPMVEEVSRA
>NZ_CP013200.1|WP_082634231.1|2499327_2501133_+|ABC-transporter-ATP-binding-protein
MLFRLIARNLAPHKVSLISIVVLQFLSTLATLYLPTLNADIIDEGVVKGQTDVIMNLGMWMLLITAGQVVCAIAATYLSAKLAMGVGRAIRRDLFDKVETFSSQEVGIIGAPSLITRTTNDVQQVQMLTLMSFTMMVMAPIMCIGGIVLAMAQDVPLSGLLLVILPVLIIAIGLIVRVLVPTFRKVQRQLDDINGVLREQITGISVIRAFGRRDYEADRFATANGALTSSQLRAGRLMSLMFPTIFFVVNVTSVGVLWFGGQRIDAGDMQIGALTAFLSYIMQILMSVMMAMFMFMMIPRAAVSAERIMEVLNTEASVVDGPNAVHVTRLDGRLSVTNATFTYPGAQSPVLSGVSFTASPGSTTAIIGSTGSGKSTLVNLMPRLLEATEGGIELGGYNIKDVTLSALRGSIGLVPQKAYLFTGTVASNIRMGNPEATDDQLWHALETAQAAGFVRDMPEGLDAPIEQGGSNVSGGQRQRLCIARAIAASPSVYLFDDSFSALDYATDAKLRAALKPVTREAAVLVVAQRVATIKDADNILVLDEGLLVGQGTHEQLLLSCPTYQEIVNSQLGADDDPGAPALDSAGLDTDRADFGSKGGHS
>NZ_CP013200.1|WP_062288653.1|2498414_2498918_+|CoA-binding-protein
MSTANTPERTWVGPSAPERLAILRKTQSIAIVGASDKPSRASYFVATYLLSSSRYRVYFVNPVATEILGQPVYKSLADLPEVPDLVDVFRRHDDLPTVLDEAIAVGAKTLWLQLGSWHEDVAAKAEAAGMEVVMDRCVKIEHARFHGGLHLAGFDTGVISSKRQVVA
>NZ_CP013200.1|WP_062288650.1|2497053_2498418_+|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MTEHSFGFRTRALHAGGTPDSEHGARAVPIYQTTSFVFKDTDDAANLFALQKYGNIYSRIGNPTVAAFEERIASLEGGIGAVATASGMAAEFVTFAALAGAGDHIVASSKLYGGTITQLDVTLRRFGVDTTFIDSNDPADFAAAIKENTKAVYTEIVANPSGDIADLEGLATVAHAAGVPLVVDATLSTPYLIRPIEFGADIVIHSATKFLGGHGTTLGGVVVESGRFNWGNGKFPSMTEPVASYGNVSWWGNFGEYGFLTKLRSEQLRDIGPALSAQSAFQLLQGVETLPQRMDEHLRNAAAVAAWLEADERVSWVQFAGLPSHPHFERGQHYLPKGVGSVFAFGVRGGRAAGKKFIDSLQLASHLANIGDSRTLVLHPGSTTHQQLTAQQLEAAGVPEDLIRISIGLEDLADILWDLDQALTVAQEFIASSAADAQATDEDTAPSCTIGANA
>NZ_CP013200.1|WP_062288648.1|2495875_2497054_+|dimethyl-sulfone-monooxygenase-SfnG
MSIAPVNIADLATPLKFAYWVPNVSGGLVVSTIEQRTDWSFEYNKKLAQIAENSGFEYALTQTRYAASYGADQQHEATSFSLALLGATERLKVIAAVHPGMWHPGVLAKFIITADHLSNGRAAVNIVSGWLKDEFVNFGLDWLEHDERYVRTEEFIRVLRGLWTEKEYSQAGKYYNINNFTLNPAPVAVPGRPHPEIFFGGNSTAAQATAGRVADWYFSNGRTLEGYTENVNGVLAAAAESGRKPRFGLNGFVIARDSEKEARETLREIVAKAHRPAVEGFAAAVKEAGASTKDGKGMWADSSFEDLIQYNDGFKTELIGTPEQIATRIVEYKKRGVNLLLTGYLHFQEETAAFGRDVMPIVRELEADLARKHGTELDTSLLPITNFDKVSV
>NZ_CP013200.1|WP_062288646.1|2493036_2493609_-|flavin-reductase-family-protein
MSQSTVFAEPEQANHHGFSDMLSADDFKSAFRNHPAGVAVITADIGNGPVGLTATSVISVSANPPLVVFSLSSASSSTPTIKQAETVVIHLLGADQIGLAKNFATSGIDRFADTSIWSRLVTGEPVLPSANAWMRGRIVNQMDAGDSTVVAVQILQVDLPGESSRTAEQARPLVYHDRTWHSLSETSVVQ
>NZ_CP013200.1|WP_062288643.1|2491146_2491845_+|PIG-L-family-deacetylase
MTVLEQFPQDWQRALVLVAHPDDPEYGMGAAVAQWTAAGKEVSYVLASRGEAGIAGMSPGESGPLRSLEQQNACARVGVTDLVFLDHPDGRIEEGLALRRDFAREIRRARPEVVLTLNHRDEWGPGQWNSADHRAVGRAVLDAVGDADNEWIFPELLDEGLSRHKVRWVAISSPQPTHTQAVTAMSIDKAVASLAEHREYLRALSDVPVEEQARKQIEMVTAGGAVAFEVYG
>NZ_CP013200.1|WP_062288663.1|2508428_2510492_+|excinuclease-ABC-subunit-UvrC
MANPVDYRPKPGEIPTDPGVYRFRDEHGRIIYVGKAKNLRSRLNSYFANPATLLPKTHAMVHHAASVQWTIVGSELEALQLEYTWIKEFTPRYNLAFRDDKTYPYLAVSMSEKFPRVQVMRGERRKGTRYFGPYTAGAIRETMDTLLRVFPVRSCSVGVLRRAERSGRPCLLGYIDKCAAPCVGRISVEDHQALAQDFCDFMGGEAKRFIGTLEKKMAAAVSELDYEQAARLRDDIIALKKVFERNAVVLTEDTNADIFAVEQDDLEAAVQVFYVRGGRIRGQRGWIVEKVEDATDADLWEHFMQQVYGSEDSEQDSIPRNILVPELPANHEELSVWLGTLRNGPVSIKVPQRGEKAALMDTVQANARQAMILHKSRRAGDLTTRSLALQELQEALELPMPLLRIECYDISHVQGTNVVASMVVVEDGLTKKSEYRKFAITGDAAIDDTASMYDVITRRFRNYLAEQERCAQNVGISGEVLARPALLGTHDGGTSSGVPAGLSGGLDSDGANGDGAETPKSKFAYPPNLVVVDGGIPQVNAASRALADLGITDVAVVGLAKRLEEVWIPDSDFPVILPRSSEGLYLLQRIRDEAHRFAITFHRAKRGKAMVASVLDTVPGMGAAKQKSLLAHFGSLKKVRAASLEELGEAKGVGPVLAQAIYDTLNAQDQNQPQAPAVNMTTGEILD
>NZ_CP013200.1|WP_062288667.1|2510667_2510970_-|helix-turn-helix-transcriptional-regulator
MVRLPLTPAEIERGQNLGALLRRARTDRSMFDVAVAAGISPETLRKIETGRVATPAFSTIAAIAAVLGLSLDDVWAAINQPAATPVYQALADRLPERLAS
>NZ_CP013200.1|WP_062288672.1|2511036_2511801_+|type-I-methionyl-aminopeptidase
MIEIFGPADLPRARESGKFIGSVLKSLQGRAKVGTNLLEIDQWAAEMIADAGASSCYVDYDPSFGDGPFGHYICTSVNDAVLHGKPHDYALKDGDLLTLDLAAILGGIAADAAISFIVGAPASPADSLMIETTQRALAAGIAAANPGARIGDISHAIGSVLSAGGYPINTDFGGHGIGTTMHQEPHISNDGQPGRGYKLRPGLLLAIEPWIMADTAELITDSDGWTLRSATGARSAHSEHTIAITEDGPLILTN
>NZ_CP013200.1|WP_062288675.1|2511934_2512858_+|RNase-adapter-RapZ
MTQQQEPTAAVEGELTPVKPVEAELLVVTGMSGAGRSTAANALEDHGWFVIENLPPQMLAALAELVARMPAALPKLAVVVDVRGKALFADIRESLNALSAAGVSYRVLFLDASDDTLVRRFEQGRRPHPLQKDGRITDGIAAERLLLAEMKDQAEMILDTSVMNVHQLGTAVTELFSESGPVVLSLTIMSFGFKYGLPVDANYVADVRFIPNPHWIPQLRPFTGEDEVVSNFVLNDNGANDFVDRYVHMLEPVFDGYRRENKHYATIAVGCTGGKHRSVAVAIELAKRLSQLPRVTTSIRHRDLGRE
>NZ_CP013200.1|WP_082634233.1|2512860_2513925_+|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MYTGILPIIPSANKLPAADSGVKVAALGGGHGLAASLSALRLVTGNVTAVVTVADDGGSSGRLREELGVLPPGDLRMALSALCDDTDWGRTWRDVMQHRFTSKEGVAGSLDNHALGNLLIVTLWELLGDPVAGLRWAGALLGARGEVLPMASVPLTIEGLVRVNGTPGTLIRGQSKLAKAGEVENVRLLPKDAPACREAVTAIHEADWVVLGPGSWYTSVLPHLLLPEMRQALCTTKAKRLITMNLDVNDLEAAGMNAADHLHVISRYAPEFTVDVVLADPSTIGDAAEFERAAAMIGAEVVFGKVGSSGGDAVHDPLRLAAAYRDILVVKNYRDQWRMNHGANRGSKRGIVPA
>NZ_CP013200.1|WP_062288678.1|2513881_2514862_+|DNA-binding-protein-WhiA
MALTAAVKEELSRLDVKKSSVRKAEVSALLRFAGGLHIIAGKIVIEAEVDTAATARRLRMAIAEMYGHQSEIVVVSGGGLRRGSRYVVRVVRDGEALARQSGLLDGRGRPVRGLPSAVVNGSTADAEAVWRGAFLAHGSLTEPGRSSALEITCPGPEAALALVGAARRLDIAAKARDVRGIDRVVIRDGDTIGALLVRMGAHDTFLVWEERRMRKEVRATANRLANFDDANLRRSAQAAVAAGARVERALEILGEDVPDHLKYAGELRVAHKQASLDELGRLADPPLTKDAIAGRIRRLLAMADKKAKDLGIPGTESNVTFDMLDG
>NZ_CP013200.1|WP_062288682.1|2514970_2515594_+|superoxide-dismutase
MTQYSLPELSYDYAALEPNISARIMELHHSKHHAAYVAGANLALEQLAEARESNNFANVNKFSKDLAFHLGGHTNHSIFWNNLSPEGGDKPEGELAAAIDDAFGSFDAFRAHFTAAAMGIQGSGWALLSYEGLGGNMLIEQLFDQQGNVPVATTPLLMLDMWEHAFYLDYVNVKADYVKAFWNIVNWADVSKRFEAARKNATGLILP
>NZ_CP013200.1|WP_062293476.1|2515858_2516866_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTTRIGINGFGRIGRNYFRAALAQGADIEIVAVNDLTSPEALAHLLKYDSVNGRLSVSVEVVDGHLVVDGKTITVLAERDPANLPWGELGVDIVIESTGFFTKAAAAQKHIDAGAKKVLISAPASDEDITIVLGVNDDLYDPAAHHIISNASCTTNCLGPLAKVLNDNFGLERGLMTTIHAYTADQNLQDGPHSDLRRARGAAINMIPTSTGAAKAIGLVLPELKGKLDGYAIRVPVPTGSATDLTATVSREVTVEEVNAAYKAAAAEGKLAGYLTYTEDPIVSSDIVGDPSSSIFDSGLTKVIGNQVKVVSWYDNEWGYSNRLVDLTELVASKL
>NZ_CP013200.1|WP_062288686.1|2516879_2518118_+|phosphoglycerate-kinase
MTLHTLSELIDEGVRGRYVLVRSDLNVPLDGSNVSDDGRIKASIPVISALANAGARVLVSAHLGRPKGAPEAKYSLAPAVARLAELAPELNATLAADTTGPAAVAAAAELADGSVLVLENVRFDARETSKDDGERAAFAAELASLTGTNGAYVDDAFGAVHRKHASVYDIAKVLPSYQGDLVRTELEVLRKLTTESERPYVVVLGGSKVSDKLAVIDNLIGKADSILVGGGMLFTFLAAQGHKVGASLLEVDQIPVVQDYLARAEAAGTTFVLPTDVVVAAGFAADAAHEVVAAQSIESSSFGAAGLGLDIGPDSGAAFAAAISGAKTVFWNGPMGVFEFPAFAGGTRAVAGALAANTSNGGFNVVGGGDSASAVRSLGFADDAFGHISTGGGASLEFLEGKELPGLIALDR
>NZ_CP013200.1|WP_062288689.1|2518229_2519045_+|triose-phosphate-isomerase
MTTSTNGNFDRTPLIAGNWKMNMDHVQGITLLQKLAWTLSDARHDFDRVEVAVFPPFTDLRGVQTLVQGDKLKLVYGGQDLSDKDSGAYTGDISGAFLNKLGCAYVLVGHSERREIHGESDQLLNAKVQAAFRNEVTPVLCAGEGLEIRKAGTHVEHTLAQVRGGVAGLTAEQAAQLVIAYEPVWAIGTGEVAGPEDAQEMCAAIRAELVELFDAETAAKTRLLYGGSVKANNVGAIMAERDVDGVLVGGASLDAGEFASIARFENHLVTK

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Crispr_ID: NZ_CP013200_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013200_7

2751723-2751800

Orphan

Consensus_repeat	Method
CCGACCACGGACCCCACGGTGGACCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013200_7

>merge|NZ_CP013200|7|2751723-2751800|CRISPRCasFinder
CCGACCACGGACCCCACGGTGGACCCAACAACGGATCCCACGACGGCGCCAACCACGGACCCGACCACGGACCCCACG

>NZ_CP013200|7|7|2751723-2751800|CRISPRCasFinder
CCGACCACGGACCCCACGGTGGACCCAACA	ACGGATCCCACGACGGCG
CCAACCACGGACCCGACCACGGACCCCACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013200.1\|WP_062289245.1\|2741147_2741363_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181104
NZ_CP013200.1\|WP_129587408.1\|2747652_2749143_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293757
NZ_CP013200.1\|WP_062289301.1\|2755632_2756283_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP013200.1\|WP_062289297.1\|2754359_2755526_-\|lipase	unknown	unknown	gnl\|CDD\|238881
NZ_CP013200.1\|WP_062289311.1\|2760695_2761313_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NZ_CP013200.1\|WP_062289291.1\|2752194_2752596_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226720
NZ_CP013200.1\|WP_082634534.1\|2759835_2760606_-\|urease-accessory-protein-UreD	unknown	unknown	gnl\|CDD\|223899
NZ_CP013200.1\|WP_062289242.1\|2740455_2741133_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP013200.1\|WP_062289314.1\|2761340_2762027_-\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NZ_CP013200.1\|WP_082634265.1\|2756593_2758126_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223903
NZ_CP013200.1\|WP_082634533.1\|2758738_2759776_-\|nickel-transporter	unknown	unknown	gnl\|CDD\|225911
NZ_CP013200.1\|WP_062289293.1\|2752802_2754281_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP013200.1\|WP_062289261.1\|2746602_2747625_+\|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270279
NZ_CP013200.1\|WP_062289258.1\|2745657_2746455_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP013200.1\|WP_062289255.1\|2743293_2744460_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP013200.1\|WP_062289317.1\|2762028_2762523_-\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_CP013200.1\|WP_082634263.1\|2744766_2745648_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP013200.1\|WP_160320829.1\|2740131_2740296_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_062289252.1\|2742542_2743151_+\|phosphoribosylanthranilate-isomerase	unknown	unknown	gnl\|CDD\|238237
NZ_CP013200.1\|WP_062289249.1\|2741528_2742338_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294

Protein	Function_ID	Function_description	E-value
NZ_CP013200.1\|WP_062289245.1\|2741147_2741363_-\|hypothetical-protein	gnl\|CDD\|181104	PRK07758, PRK07758, hypothetical protein; Provisional.	5.90205e-10
NZ_CP013200.1\|WP_129587408.1\|2747652_2749143_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293757	cd16033, sulfatase_like, uncharacterized sulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NZ_CP013200.1\|WP_062289301.1\|2755632_2756283_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.42708e-26
NZ_CP013200.1\|WP_062289297.1\|2754359_2755526_-\|lipase	gnl\|CDD\|238881	cd01844, SGNH_hydrolase_like_6, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	3.35091e-63
NZ_CP013200.1\|WP_062289311.1\|2760695_2761313_-\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	1.88096e-115
NZ_CP013200.1\|WP_062289291.1\|2752194_2752596_-\|hypothetical-protein	gnl\|CDD\|226720	COG4270, COG4270, Predicted membrane protein [Function unknown].	0.000811207
NZ_CP013200.1\|WP_082634534.1\|2759835_2760606_-\|urease-accessory-protein-UreD	gnl\|CDD\|223899	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones].	8.71622e-74
NZ_CP013200.1\|WP_062289242.1\|2740455_2741133_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	2.76197e-18
NZ_CP013200.1\|WP_062289314.1\|2761340_2762027_-\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	6.26456e-65
NZ_CP013200.1\|WP_082634265.1\|2756593_2758126_-\|amino-acid-permease	gnl\|CDD\|223903	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism].	0
NZ_CP013200.1\|WP_082634533.1\|2758738_2759776_-\|nickel-transporter	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	1.28325e-69
NZ_CP013200.1\|WP_062289293.1\|2752802_2754281_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.40203e-81
NZ_CP013200.1\|WP_062289261.1\|2746602_2747625_+\|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270279	cd13561, PBP2_SsuA_like_4, Putative substrate binding domain of sulfonate binding protein-like, the type 2 periplasmic binding protein fold. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.76342e-56
NZ_CP013200.1\|WP_062289258.1\|2745657_2746455_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	7.46097e-132
NZ_CP013200.1\|WP_062289255.1\|2743293_2744460_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	6.23791e-38
NZ_CP013200.1\|WP_062289317.1\|2762028_2762523_-\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	6.73874e-41
NZ_CP013200.1\|WP_082634263.1\|2744766_2745648_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.20096e-72
NZ_CP013200.1\|WP_062289252.1\|2742542_2743151_+\|phosphoribosylanthranilate-isomerase	gnl\|CDD\|238237	cd00405, PRAI, Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.	4.33775e-73
NZ_CP013200.1\|WP_062289249.1\|2741528_2742338_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	1.74602e-09

>NZ_CP013200.1|WP_129587408.1|2747652_2749143_+|sulfatase-like-hydrolase/transferase
MKRQNMLFLMTDQQRIDTLGCYGNTSLHTPNLDRLAERGTTFDRAYTPTAICTPARASLLTGLQPFEHGLLANYEWNSGHREELPDGLPTFSVALQEQGYRLGHVGKWHVGKDRGPEHYGFEGIHLPGALNVFDDPGYEDWLAANDFPDFRISSPVYTTRADGSQGHLIAGVTDQPTEATFEAFLADQTIAKLREFAAGALKDESTPFFLSCHIFGPHLPYLIPQQWYDMVDPSTIELPGSFAETFHGKPMVQQAYAEYWSTDCFTVDEWKKLTAVYWGYVSMIDHEIGRILDVLDELGLTENTAVMFTADHGEFTGAHRLNDKGPAMYEDIYRIPAILALPGEVERREDRFISLLDFTATFHEIAGADASGVHGRSLLPLAHGEDVEGWREDILCEFHGHHFPYAQRMIRNKDVKYIANPEGIDEFYDMIADPDELTNVINVPIYRERVSTMRRTMYRQLVERGDKFAQWLAFAGDIPEHERVRPATAVERFITA
>NZ_CP013200.1|WP_062289261.1|2746602_2747625_+|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein
MTTNFSRRNVLQLSLGAAAISLLAACGAKTEDVGSAGAAKDLLDINVGYIADYNGAALMAVADQEGYWAKAGLKPKYLPFTNGPLAIQALGTNNVDVVYIGSGALWLPASGKAEIWAVNSVSNADRIIAQPGIKTLAELKGKKVAVPTGTSGDQLFSLALAKEGLTREDFKVTAMEPPAIVAAFAAGQIDGAALWYPLIDSAKKGQPDLVELFSNEDFIDTFTFPSTFVASPGRAAKDKALATGFISVVKSANDYRHANQDTTIALTAKFLKLKDEDMAAQASVAKLFTSKELETLSSEGTVYTWLNGLQEQFKKDEKIKAITDPKTFYNSELFVSTPTV
>NZ_CP013200.1|WP_062289258.1|2745657_2746455_+|ABC-transporter-ATP-binding-protein
MTIATQKAMIRFEDLRQEFTLSGTTFTALDGVNLDIADGEFVTVVGPSGCGKSTMLNAAAGLLDPTSGRVMVDDREVDGPSTRTGVIFQQYALFPWLTVRKNVEFGLELKKIPAKERREIVDHYLELVGLNRFAEALPKELSGGMKQRCAIARAYAVNPEILLMDEPFGALDALTRVHMQEQLLQTWTKERRTVMFVTHDVDESVFLASRVIVMAARPGRIFKEIKIDLPYPRTEEIRLSDEFAHLRTQVWEAVYHQPGVAEAHQ
>NZ_CP013200.1|WP_082634263.1|2744766_2745648_+|ABC-transporter-permease
MAPKDSIVQNEIPPAAGGIPTRKDALQTSSLAPSKKSSKPSGRKLGRKAFLAINVASVAAGVVGWAAVSAAGLVGLPGPVEVLVRGGELLADGTLAEDTGASLARVLSGFLLGSLLAIPIGFLMGWYQVGRAIIEPWVQFFRTIPPLALLPLVMVTMGIGETPKIFVIFLAAFLSCVISTYQGVVSVDKTLINAARVLGANSLVIFRRVVVPASSPFILVGMRIGLGAGWATVVAAELLAAPNGLGMRMQQAQQFYDMPTILVNVLVIGVLGLLMDRLLLMIEAHLTRWQERR
>NZ_CP013200.1|WP_062289255.1|2743293_2744460_+|ROK-family-transcriptional-regulator
MLTPDDSALQAVRRRHELRVLESLAAHGNRTRRELETDTKLSRTTLSAIVSDLRLRGVVTESEPEFHGRGRSGRPTKVLSLNPNAGAAVGIELGRRRISISVTGFDGSTVVRELSAISSSVSLPDKVAMAADMLKRLIADGRINTETVIGTAVGIASRHANPNSLADGVEPQSDPQGASLTLLREVIPGPMLWDNNIRLAAMAYGKGSDDLLYVVLSAGISSAIVSQGSLMRGGNGIAGELGHISVDFAGPVCWCGRHGCLESFINEANVLVEAAHRGQSFQSIEAMAQAAAEGNGIAINVVSWAGELLARALMGACVLLDPRRVVVTGELSQFGELLLEPARRALAEQNLDLGPRSTEISAATFAPSAGSDGASQMALKHWSMATVG
>NZ_CP013200.1|WP_062289252.1|2742542_2743151_+|phosphoribosylanthranilate-isomerase
MYVKICGLQTAETIAAAVDAGADAVGFIFAPGSPRTVAPELVAELVTAVPQGIETVGVFRNQPIDDVLEMARQAAVSTVQLHGDESLADMAWVHEAGFRSLRAFSADAYNGLSADERHAWDSERLLLDAVEPGAGVTFDADVLTDGTPQGFWLLAGGLNPNNVAAAVSALKPAGVDVSSGVESSRGVKDVHLIRDFVKAARQ
>NZ_CP013200.1|WP_062289249.1|2741528_2742338_+|metal-dependent-hydrolase
MMGPHHAATGAAVWLALTTQFDVGLGQLSQLIPVLPETLTVGMGLMDLTPTSVVAGALVTAGAALVPDADHRHATIAHSLPPLSNILCIQIGKMSGGHRHGTHSILGMAVFVAIAALAGMWTVELPGYGTVFPGAGMLAVLLAAFAGKVLKMIPDTMRKFPWVLGIAVGIFVMLFAPQHEYWFPLAMGLGVAAHILGDMLTTGGCNLLWPLKIKPPRWLRKVPLVTSIWRPSGNVAIPILGNAGSVREWLVLVPISGYVIWAIADAVFS
>NZ_CP013200.1|WP_062289245.1|2741147_2741363_-|hypothetical-protein
MTEQITTAATEFPRSIGQPAMRALADEGITTFAQLTTRSSKALLALHGVGPKSIRILGEELATRGLTFASD
>NZ_CP013200.1|WP_062289242.1|2740455_2741133_+|YceI-family-protein
MRKKLMIFGILLVVALGAVWGGSAIYAKIGNEQAPDQLSLSSPTPGATPAGTMAAAELSGTWNISDGSQAGYRVKEVLNGQDVTVVGRTGAVSGQATIDGTSLVAATAVVDMGNVTTDNSSRDSQFQGILKTSEFPTSTFALTSPVDIGAVAGGAATTEATGQLSIAGVTRDVKVALNVQTTADGVEVQGTIPVTFSDYGVDAPNLGFVKVENSGAVEMLLKLKK
>NZ_CP013200.1|WP_160320829.1|2740131_2740296_-|hypothetical-protein
MSQEPVEERPARDGRTAGKHSSVEDFIKLMVPEPDLLEEETTPDPDVEPRETGA
>NZ_CP013200.1|WP_062289291.1|2752194_2752596_-|hypothetical-protein
MMRVNTVKTWALAALLGTSAVNHVRNPAFYYPVVPPSLCSDKGGRLGVMTRKQWVLASAVPEALAVVGLLIPRTRNVTAIATTLMFVGFTAGHLTALRRAFGPEGTSQTKRIHAVRLPLQVPLIAWAWSVRKP
>NZ_CP013200.1|WP_062289293.1|2752802_2754281_+|multidrug-efflux-MFS-transporter
MSLSTAEAPDRLSARDRTTIGVLLVSAFVVILNETIMNVALTELMDKFQVSASAIQWLATAFMLTMAVVIPTTGYLLTRLPIRTVFMVAMGLFSAGTLLAGLAPGFEVLLVARVIQASGTAIMMPLLMTTILDLVPSHRRGAIMGNVSIVISVAPAIGPTLSGLILHSLSWRFIFLLVLPVAVFALILGSRLLPTGGERSHSKLSVTSLLISIPAFGGLVYGLSGIGSPDAGTHLIALVALGVSLVSLAAFVILQLRLQRTDSALLDMRPFLLRQFTLALALMVMAMLALFGVIILLPMYLQNVRGLDVLTTGLVMLPGGILMGVLAPWVGKLFDKVGARPLLMPGGLLLSAVLFGYTQLNETTPLAMIIGMHLVMSVALAFIFTPAFTAGLNPLPHSLHSHGSALLSTLQQLGGAAGTALLVGVMSAGTLAAAAAGKDPIAAQTAGFSNGFMVAGCVALGIAVIAAFMGKSRDASSSEPASTTAKATSAMH
>NZ_CP013200.1|WP_062289297.1|2754359_2755526_-|lipase
MITTHPIPASFIRGALELESTATGTIVHRLPSSARAQANGDPQLLMVEQQPSGVRIVFQTASTTIELDTVRSRTSYAGAPSRPDGVIEIVVDGSVFGESVTNGGILTTIDMATGVPSREQGPSCTSSFTNLPAGLKNIELWLPHNEVTELLELRSDAPLQPQPVSVRPQWLHHGSSISHGSNATRPTAIWPALAARLGGMELTNLGFGGSALLDPFTARTMRDTPADAISIKMGINIVNLDLMRLRAFGPAVHGFLDTLRDGHPETPLLVVSPVFCGIHEDTPGPGAFDMAALAEGKMRFIATGDPLETAAGKLTLRIIRDELERIVRARAQSDPNLHFLDGLALYGESDAQTHPLSDALHPDSETHRLMGERFARLAFRPGAPLEAR
>NZ_CP013200.1|WP_062289301.1|2755632_2756283_-|DedA-family-protein
MTDFLMAAAGQPWAYVVVVVFCLLDGFFPPIPSETLVVGAAALAVNHGWSALSLLVLTAAVGAFLGDNVAYMIGRHLGKHRFAWLRRPMMQRAFAKAETELEQRAVSMILVARFLPVARVAVNLTAGATRYNRRRFVAVSALSATLWAIYSVAIGALAGSWLREHPLLGLIGAMLVAGLLGIVLDKTLGAFRARRGATNSKPEPEPARSLAAANLL
>NZ_CP013200.1|WP_082634265.1|2756593_2758126_-|amino-acid-permease
MSRTSVDSAIASHGQAAVTGTKQEGSGADNELKRGLSSRHLQMIAIGGAIGTGLFVASGGTIAQAGPGGALLAYILVGLMVFLLMQSLGEMSAKIPVAGSFQTYATRFVSPSFGFAVGWNYWFNWAITVAAELVAAGIIMDFWFPGVPGWLWAGAFLVLLTAVNALSSKAFGESEFWLSSIKVVAVILFLIAGVLMIFGILGDGHSGMSNWQNGEDVFHGGWVSIISVFMIAGFSFQGTELVGVAAGEAKNPRREVPRAIRSVFWRIMIFYVGAIFVIGCLIPFTDPSLLASGEADIAASPFTLVFERAGIAFAAAVMNAVILTAILSAGNSGLYASTRMLYAMAHDGKAPKIFGRTNSRGVPMAALLATAAVGLFGFLSAIVGQGAAYSWLLNVSGLSGFIVWAGIAVSHYRFRRGFIAQGNKVSDLPYRASFFPIGPILAFTVLILVIAGQNYEAILAGRGAEVLSSYIGIPIFLGLWLIHRFVSKSKVVPLLEMDLSGPKDVEESAA
>NZ_CP013200.1|WP_082634533.1|2758738_2759776_-|nickel-transporter
MGATFLAVALLHIVVAGLVAFSLLTDVHPLAIGLVITAYLAGVKHSYDWDHIAAIDNSSRKFAAQGRGPVSVGFAFSMGHSSVVLLAGVLVVSGASIMGAVLQDGSAANMTLAVFGASVSALFLLAIGLFNGAAFLKANVLFRRVSGGGEVADDELAPTGMVARLMDKPLSRVKRPRDIYVLGFLFGLGFDTASTIAFLLLTASAALAGISIAALMALPLAFAAAMTLCDTANGMAMMKMYRSAVMNPTRRIGFNMVITGLSSTSALFISALTIAGIMQDVLGLKDPVSTWLANLDLGHAGLLLVGLFLAVWGIAAMGWRRDRHDGGSHRTTSSPKSSSGSSPES
>NZ_CP013200.1|WP_082634534.1|2759835_2760606_-|urease-accessory-protein-UreD
MAVKQFHDGALRILRPHYLDESGQVCYVVINPGGAYLGGDKYLIEVAVADGAELLLTTQSATKVYRTPNNRAEQHMRVLLGAGSRLELLPDPLIAYREATYAQVTAVDMDPTASLVMAEVVTPGWSPDGKLFRYDEIRMRNEISIGGRLTVLDNLLIRPGSGSPVDSTCFMAEYTHLASLLVMDARVDQALVDELHALLAPKNDGGQLGLTLLDGPGLALRALSHSTERLNEMLAAAVDLLRKRWHGQEPLNLRKY
>NZ_CP013200.1|WP_062289311.1|2760695_2761313_-|urease-accessory-protein-UreG
MKPIKIGIGGPVGAGKTQLVERLTRALDGQISSAAITNDIYTIEDAKILAANGVLPLDRIIGIETGGCPHTAIREDTSMNSAAVEELEARHPDLQVIFIESGGDNLSATFSPELVDFSIYIIDVAQGEKIPRKAGQGMIKADLFIINKTDLAPYVGADLSVMEADTLEFRGHKPYCFTNLKTDDGLEHVLNWLKRDVLMLDLETR
>NZ_CP013200.1|WP_062289314.1|2761340_2762027_-|urease-accessory-protein-UreF
MAPAPSYLLPLLQLSDSALPTGAFSHSLGMETHLDRGIVHDENSFANWLTQFIRIQLVHSDGLAIRLVYDAETQAELFRVDRELHAAALPREIQEAGVKMGARMLDIAGSVFPCAELGDYAVAVGSGECAGHPALAFAIAGKNLGVPLEELLSTYLFSTVTSLTQNAIRGIPLGQSAGQRVLAAAHHEVRDGVVLIQTLGREDFGVTAPGLEIAQMQHERQRARMFMS
>NZ_CP013200.1|WP_062289317.1|2762028_2762523_-|urease-accessory-protein-UreE
MIIDAILGNKFDPATQTFDPSVLEKLHEERVVLPSALLVKRIQRVTTDHGRELGIRLAGETTADLRDGDVLYVDETDAIVISVEHSDVLVIAPESVKEMGIVAHNLGNRHMQAQFFGEDSEYEAQVMVLAYDHTVEDYLKHVGVPYSRQERVMPVPFRHAEHTH

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Crispr_ID: NZ_CP013200_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013200_8

3659524-3659613

Orphan

Consensus_repeat	Method
CACGACGCCGGATGCGCACCTTCACGCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013200_8

>merge|NZ_CP013200|8|3659524-3659613|CRISPRCasFinder
CACGACGCCGGATGCGCACCTTCACGCCCCCTCGATCAGTCCCGCTCTGGGACAGACCAGCACGACGCCGGATGCGCACCTTCGCGCCCC

>NZ_CP013200|8|8|3659524-3659613|CRISPRCasFinder
CACGACGCCGGATGCGCACCTTCACGCCCC	CTCGATCAGTCCCGCTCTGGGACAGACCAG
CACGACGCCGGATGCGCACCTTCGCGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013200.1\|WP_129587311.1\|3650056_3650245_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP013200.1\|WP_062291178.1\|3647757_3649557_+\|biotin/lipoyl-binding-protein	unknown	unknown	gnl\|CDD\|227111
NZ_CP013200.1\|WP_062291213.1\|3661779_3663327_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NZ_CP013200.1\|WP_062293906.1\|3667907_3668273_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|379380
NZ_CP013200.1\|WP_082634380.1\|3664936_3665815_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
NZ_CP013200.1\|WP_062291202.1\|3654463_3656068_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271366
NZ_CP013200.1\|WP_062291222.1\|3672150_3673317_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|235981
NZ_CP013200.1\|WP_062291224.1\|3673395_3674103_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP013200.1\|WP_062291204.1\|3656301_3657711_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP013200.1\|WP_062291197.1\|3652981_3653524_-\|alternate-type-signal-peptide-domain-containing-protein	unknown	unknown	gnl\|CDD\|274972
NZ_CP013200.1\|WP_062293910.1\|3674169_3674412_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_062293903.1\|3665895_3667713_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP013200.1\|WP_062291220.1\|3671347_3672142_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
NZ_CP013200.1\|WP_129587312.1\|3652314_3652899_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_062291191.1\|3651691_3652303_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|131283
NZ_CP013200.1\|WP_062291207.1\|3658085_3659498_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_CP013200.1\|WP_082634378.1\|3654323_3654467_-\|methionine/alanine-import-family-NSS-transporter-small-subunit	unknown	unknown	gnl\|CDD\|293556
NZ_CP013200.1\|WP_062291200.1\|3653878_3654253_+\|Hpt-domain-containing-protein	unknown	unknown	unknown
NZ_CP013200.1\|WP_062291217.1\|3668651_3671336_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|184951
NZ_CP013200.1\|WP_129587313.1\|3663480_3664914_-\|NAD(P)H-quinone-dehydrogenase	unknown	unknown	gnl\|CDD\|236112

Protein	Function_ID	Function_description	E-value
NZ_CP013200.1\|WP_129587311.1\|3650056_3650245_+\|hypothetical-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	0.000294882
NZ_CP013200.1\|WP_062291178.1\|3647757_3649557_+\|biotin/lipoyl-binding-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP013200.1\|WP_062291213.1\|3661779_3663327_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	3.4529e-88
NZ_CP013200.1\|WP_062293906.1\|3667907_3668273_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|379380	pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain.	2.04946e-43
NZ_CP013200.1\|WP_082634380.1\|3664936_3665815_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	5.12992e-125
NZ_CP013200.1\|WP_062291202.1\|3654463_3656068_-\|sodium-dependent-transporter	gnl\|CDD\|271366	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.	0
NZ_CP013200.1\|WP_062291222.1\|3672150_3673317_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|235981	PRK07239, PRK07239, bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated.	1.03781e-137
NZ_CP013200.1\|WP_062291224.1\|3673395_3674103_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	1.43798e-115
NZ_CP013200.1\|WP_062291204.1\|3656301_3657711_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.84175e-165
NZ_CP013200.1\|WP_062291197.1\|3652981_3653524_-\|alternate-type-signal-peptide-domain-containing-protein	gnl\|CDD\|274972	TIGR04089, conserved_hypothetical_protein, alternate signal-mediated exported protein, RER_14450 family. Members of this Actinobacterial protein family contain the cognate signal peptide domain, modeled by TIGR04088, for the variant SipW form of the signal peptidase I family. The remainder of this protein, however, differs from families such as Peptidase_M73 (pfam12389) and YqxM (TIGR04087) that share the same signal peptide domain. Some additional homologs to this family lack full-length homology and are excluded by the trusted cutoff as set. The two known targets for export by the SipW signal peptidase in Bacillus subtilis act in producing biofilm matrix material.	4.47339e-22
NZ_CP013200.1\|WP_062293903.1\|3665895_3667713_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP013200.1\|WP_062291220.1\|3671347_3672142_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	8.85672e-93
NZ_CP013200.1\|WP_062291217.1\|3668651_3671336_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|184951	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.	0
NZ_CP013200.1\|WP_062291191.1\|3651691_3652303_-\|signal-peptidase-I	gnl\|CDD\|131283	TIGR02228, Signal_peptidase_I_W, signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.	7.74957e-15
NZ_CP013200.1\|WP_062291207.1\|3658085_3659498_+\|MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	1.0592e-106
NZ_CP013200.1\|WP_082634378.1\|3654323_3654467_-\|methionine/alanine-import-family-NSS-transporter-small-subunit	gnl\|CDD\|293556	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit. MaAIMP_sms is a family of hypothetical proteins from Proteobacteria that purported to be small subunits of a methionine and alanine importer.	0.000114042
NZ_CP013200.1\|WP_129587313.1\|3663480_3664914_-\|NAD(P)H-quinone-dehydrogenase	gnl\|CDD\|236112	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.	0

>NZ_CP013200.1|WP_062291207.1|3658085_3659498_+|MFS-transporter
MTAEQMSTSTSKTTATDTGVALSSSRGRWLHHWNAEDTGQWNSVGRAIAKRNLAWSIACEFLGFVVWQLWSIVVVFLPSAGFTFSSGELFWLISIPSLVGATLRIPYTFIVAKFGGRNWTIVSALLLLIPTLGMAWCLGNPETPFGTMLVVAALAGLGGGNFASSMANITYFYPAREKGWALGLNAAGGNLGAAVAQFMVPVAVTLLAAGTLGLPLAGLMWVPLILIAAWGAWKYMDNLSSAKSDIAGSLASLREPHLWILALLYIGTFGSFIGFSAVFPKLIMDSFGPGVGLKLGPAIISLAFLGALIGSLARPYGGKLADRWGGARVTVACFGVLALAAMIQVLTLPLGSFPLFLILFLVLFAAAGAGNGSTYRMIPMVFALRAKASTDASGAGHMSATRKGSAALGIISAIGAYGGFVVPQVLNASRQSTGGYEGAFIGFVAAYLVLMALTWAVYLRRSSAASLGNV
>NZ_CP013200.1|WP_062291204.1|3656301_3657711_-|MHS-family-MFS-transporter
MSSSKITAAAETAPVNSRGRVIVASLIGTTIEFYDFYVYATAAVLVFPALFFPNADAATALLSSFAIFGVAFVARPLGSIVFGHFGDKVGRKGTLVASLLTMGVATFLIGCLPTALVPGWTFWAPALLVVMRFMQGLALGGEWSGAALLATENAPEGKRAIWGTFPQLGAPIGFILANGIFLWLSLGMSTEQFQAWGWRIPFLLSAVMVIIGLYVRLKLVETPAFQKVIDQGEVSKLPVGRVFKTSWRPLILGTFVMLATYVLFYLMTTFTLSYGTTPATIEAAKAKAEAAGKPMSADAVANWVAGLGYTRNEFLVMLIIGVVFFGIFTLVSGPLAEKYGRRKSLLWITAGILVFGFTFVPLFGAGTAGVMTLLIVGFSLMGLTFGPMGALLPELFPTNVRYTGSAISYNMSSILGAAVAPFIAVALWQTADGSPVLVGIYLSSMAVLTLIALFIMKETRDLDYTSNVS
>NZ_CP013200.1|WP_062291202.1|3654463_3656068_-|sodium-dependent-transporter
MTTSPAGGGGKAAPAPRETFSSRKLFILSAIGSAVGLGNIWRFPYVAYENGGGAFLIPYLVALLCAGIPLLFLDYSIGHRFRGSAPLSYRRLHRAAEPIGWWQVLICFVIAIYYAAIIAWAAMYTWFSVTKAWGDDAEGFFFGDYLQSADQAGLSFEFVSNVFFPMLAVWVVAIVIMVAGVNKGISRANAVFLPLLVIMFVILVVQSLFLDGAMVGLNAFFTPEWSALQNPSVWAAAFGHIFFSLSVAFGIMVTYSSYLKRKTDLTGSGMVVAFANSGFEILAGIGVFAALGFMSVTSGKPVDEVASGGIGLAFVAFPTIVSEAPFGAVLGVMFFGSLVFAGLTSLISILEVIVAAFQDKLGWSRKSATLIVTIPIAVISLVLFPTTTGIHLLDTSDAFVNQFGILACALVAVIVISAGLSSLPRLQQHLNRTSTIKMGTGWRIVVGGIVPVALGYMLINEIQTKSSEQYSGYPAWFNGVFGWGMAGALIVGAVLLSLIPWSEKSKLKDPEYEAFNAAAELEGDVDNNIKELKS
>NZ_CP013200.1|WP_082634378.1|3654323_3654467_-|methionine/alanine-import-family-NSS-transporter-small-subunit
MTPVAITMMIIAMLTVWGGLALSMWNLARHPEDEDELPGPEEMPHEL
>NZ_CP013200.1|WP_062291200.1|3653878_3654253_+|Hpt-domain-containing-protein
MVNATAPLVCIETLLELEESLGGERHLTRSFVSQYIEMWPQRFDRIYTAIVSGNNADALDSALSLRSSALMVGAAQLGELTNDLIQLLDCRSHPEATRKMASLLSCGNQTVGHLRTLCLCLDKP
>NZ_CP013200.1|WP_062291197.1|3652981_3653524_-|alternate-type-signal-peptide-domain-containing-protein
MNKMAKGVITTGVGIVLLVGGGGTLATWNQAQSASMGKVVAGDLNLVPASAGVWTNASGTVVNVANYKVVPGDTLSYSQPLNLTLAGDLMVAHLAVTGASAADGFGTNATVSATTLTKSDSKVVAATADLHPADSGVVTASTTFTFNKSTTGRDAASASVDLSGIGYSLVQQAPVDTNNK
>NZ_CP013200.1|WP_129587312.1|3652314_3652899_-|hypothetical-protein
MYALKAAGLVLVAILLAMLTVQGSYALWNKAVSSSAGTVTAADFRISLTDTDTNRVTDMTLANGTAATLSLSNTSAGVLIPGQSTYAGVRVGNVTDAGGVFTVRASTGAPIVGNNTGSSLAPYMAIKTVAASSLSQCNQSVTYAGAPTSGTATADIAKNGTGVFCFQLTLAATMPASLSGQSAKISVPIVVNQL
>NZ_CP013200.1|WP_062291191.1|3651691_3652303_-|signal-peptidase-I
MSVINPAALSFGTSHDEAAVAQNIGGILRFIGRSVTYMLLLLVALVALVMVVVPIVTGAQTYTVLTSSMAPKYAPGTFMVVKPIAFAELRVGDIITYQIESGKPGVISHRIISIGAAQSGARVLTTKGDNNSLADSTPVQEVQVKGKLFYAVPYVGVIANAVGQDRDVILPVIAVGFIGFGAVSILRGALDKKRSGRNARHSL
>NZ_CP013200.1|WP_129587311.1|3650056_3650245_+|hypothetical-protein
MAMVDGVRISQVLDNLISKAIIASHGGVLSVKSKLGVGTTRSIVIPARVLNAELRVSEATKQ
>NZ_CP013200.1|WP_062291178.1|3647757_3649557_+|biotin/lipoyl-binding-protein
MSISPSVPAHKLSKVLIANRGEIAVRIIRAARDEGIASVAVYAEPDREALHVRMADEAFALGGSTAADSYLVMEKILDAAKASGADSIHPGYGFLSENADFAQKVIDAGLLWIGPSPASIAALGDKVQARHIAEKVGAPLVPGTKNPVESTQEVLDFADEFGLPLAIKAAYGGGGRGIKVVRTREEIPELYESAVREAVAAFGRGECFVERFLDAPRHVETQCLADAAGNVVVVSTRDCSLQRRNQKLVEEAPAPFLTDAQNAQLYAASKAILTEAKYQGAGTCEFLVGTDGTISFLEVNTRLQVEHPVSEEVTGLDMVREQFRIARGEDLGYSDPEVRGHSLEFRINGEDAGRGFMPAPGTVSTLTLPTGPGVRVDSGITAGEVIGGNFDSMLAKLIVTGATREQAIQRANRALAEMDIGGMPTVLPFHRAVVADPAFAPTDGKPFTIHTRWIETEFNNTIPAFDLASAAGVADDAGTRQSVTVEVGGKRLEVTLPSSFAVSNGSGAATKKVKKAGRNRNAGPAAANGNALTSPMQGTIVKVAVVDGDVVTEGDLIVVLEAMKMEQPLTAHRSGTVTGLNAAAGDTVSAGAVLATIED
>NZ_CP013200.1|WP_062291213.1|3661779_3663327_+|NAD(P)/FAD-dependent-oxidoreductase
MSLAPQHVVIIGYGPVAARLAEELLPSVRRGEMALTIIGEEPTAAYNRVLVADLGVGRTTEEAISVSDAAELRAAGMNVLMGVLVRRVDRARRGVLLSDGAWIGYDKLVFATGARPVIPTLHGLNPDPTARVPLPHGVSALRDLADAAVLRNAVVRHERVVVLGGGILGLEAALAARDEGAHVTVVHHGAHTLGRSIDAGAGHTVAAALRARGIAVVSQARAVGVELRAGADGVPTFSGLLQDAGAMVAGELLLLSCGVRPRIEVAAGAGLATDRGILVDHQLMAHHDPNIFAMGDCAEVRCLDASCAECADSSGPLGLIGPGWRQAEWLAAFLIGSAAAAAPRPGVPLPTERAAVIMLKARGVDVAAAGDVAAGPFDDIPGLAVSQWADPEHGKYVKMSTRGGVLSGFVSVGMPRAGAELTLLFERGAELPADRSALLRLDGSDGDSSAVAVPDPARTVCRCAGVTEESITAAVAGGCSTVPELSATTRAGTGCGGCHGELKSLIEAHFVPAAA
>NZ_CP013200.1|WP_129587313.1|3663480_3664914_-|NAD(P)H-quinone-dehydrogenase
MFVTSQQDVFAPFSLPSLAILGGGPGGYEAAMVAASMGAEVTIVERAGLGGSAVLTDVVPSKSLIAVAEAMNRSVDSTQLGVSFEAAEGNPKTIIKADLKQINERVLRLAKEQSADIRRGLEAVGVKIVIGTGRLLDNRTIEVDRGESREIIKADSILVSVGAHPRELATAQPDGERIFNWTQIYDLDELPEELIVVGSGVTGAEFASAFNGLGSKVTLISSRDQVLPGEDSDAAAVLEDVFARRGLRVLSQSRAEAVERTADGVVVTLGDGSKVTGTHCLVCVGSIPNTTGIGLEAAGIEVTSSGHIKVDGVSRTSAPNVYAAGDCTGVFALASVAAMQGRIAVAHMGGDGVRPLKLTQVSSNIFTSPEIASVGVSEADLASGKYQGDVIKLSLDTNARAKMRGVNDGFVKIIARKGSGTVIGGVVVGAGACELIFPIALAVTQKLHVDDVANTFTVYPSMSGSISEAARRLHVHM
>NZ_CP013200.1|WP_082634380.1|3664936_3665815_+|purine-nucleoside-phosphorylase
MHQVPPGLCLGTQGRYVGSVTIQNTAEQTDPSQLAREAAAYIAEHTGVQTHHIAVVLGSGWGEAAGLIGEVTAVLDAADVPGFSAPAVVGHVATLTSIRTPGGKNVLVLGARTHFYEGKGVRAVVHGVRTAAAAGATTMVLTNGCGGLNEAWTPGTPVLISDHINLTATSPLEGATFVDLTDLYSARLRAVAREVDSTLDEGVYAQFTGPHYETPAEVQYAKRIGADLVGMSTALEAIAARAAGMEVFGISLVTNLAAGISATPLSHGEVIEAGTAAGPRISALLAGIIAKL
>NZ_CP013200.1|WP_062293903.1|3665895_3667713_+|phospho-sugar-mutase
MAALQAAGVQWAAHDPDPATAAQLLELIAAAPADPTELADSFAGNLTFGTAGLRAAMGPGPNRMNKVVVRRAAAGVAAHLLALAKEAVEPEDAQPEGQKDTFDAGSSSASPLRYQPRAVVGFDARYNSEAFAQETAAIFAAAGIETFLMPAPLPTPVLAYAVRALECEAGIMVTASHNPRQDNGYKVYLGGRAVAPEARGVQIVAPHDSLIAGHIDTVANTAEMGDTSGIEMANKGWHVLGDALVQEYKTAVATLVDPTAFPARELRIVHTSLHGVGHETALAVLNSAGFTDVHAVAEQSAPDPDFPTVSFPNPEEPGAMDLAFALAEKVGADLVLANDPDADRVAVGALNPATGTWHQLHGDQVGALLGAHIAARGGRAGTAETGATGTPVFANSIVSSRLLNKIATAAGYGYVHTLTGFKWISRVPALTYGYEEALGYCVAPEVVRDKDGISAGLLVAEMAASLKAVGRTLFDVLDDLALAHGLHVSNQISIRVEEISDIHAMMSRLRAQPPAHFDGSAVAELADLSTGSINLPATEALAYWSDNGTRVIIRPSGTEPKLKCYLEVIIPVTGAEHLGAAHDEAQRALAAVVIDVKAALGLENL
>NZ_CP013200.1|WP_062293906.1|3667907_3668273_-|nitrite-reductase-small-subunit-NirD
MPRTAQAQGARTAHAAQWFPVCKLRDLEDSWGEAALINGQQVALFRVGENDVFAVSHADPATASHVMARGVVGSRGSTYTIASPLHKEVYSLATGECFGRPELSLDTFPVRVVAGGIEVEL
>NZ_CP013200.1|WP_062291217.1|3668651_3671336_+|FAD-dependent-oxidoreductase
MTQPSDQKTAARSATDFRKIVVVGGGPAAHRFVEAMHARGRNDWHITVLTEEVHIPYDRVALSQALTDVSTDLTLGDAALWDHPAVTLVTGAEVASINPEQSTVQTMDCGELTIYPYDELVLATGSDATRLSIPGAEHTHVYRTLDDVWMLNQQVAALSEKLGRTVQTAVIGGGLLGLEAAAGLIKLGADSVVINGGRWLMNAQLDEGAGQALGRLVAAKGMNATIGQYPKAIQTDRDGQVTGVLMADDSVVAADLVVVSVGVRPRDELARDSDGVAHHGFELGPRGGIVITDGCATSVPGVWAIGEVANYEGMCLGLVAPANTMAEIVADRLHGGSATFPGFDTATKLKLAGVDVASFGDAFATTENSLEVVYADPARGVYQKIVTSADAKTLLGGIFVGDASPYTSLRPLLGRELPGEPGAFLSAAGGGDAPVVELPDDAILCSCNNVSAGSVRDAVNGCGSCDGNVPVQDLPGLKACTRAGTQCGSCVPLLKKLMEGELKKSGITVSKALCEHFEMSRPELFEAVRALELTSFPDILARFGVDETAKAGRGCDICKPTIANILASQNSAYVLDEGRGTLQDTNDRALANMQKDGTYSVVPRIPGGEITPDKLAVIAKVAQDFGLYTKITGGQRIDLFGARLEQLPEIWKILVDAGMESGQAYGKSLRTVKSCVGSSWCRYGVQDSVAMAIKLELRYRGLRSPHKFKLGVSGCARECAEARGKDVGVIATADGWNVYVGGNGGATPAHAQLLAKDLDDETLISYIDRYLMYYIRTAERLQRTARWQEELDGGLAHVVDVVVNDSLGIAADLEAAMNTHVGNYEDEWAATLADPERLRRFRSFVNAPEVADDSIMFVPERGQIRPATASEKAEAGPVRFSSHIPVRSSIAENN
>NZ_CP013200.1|WP_062291220.1|3671347_3672142_+|uroporphyrinogen-III-C-methyltransferase
MATSTSPRRIGRTGHITLVGGGPGPADLLTLRGAKALAAADVVYFDRLGPTEDLAVLAPRATFVDVGKTPGHHKVPQEEITSRMIDGARSGLHVVRLKGGDPFVFGRGGEEIAGAVAAGIAVTVVPGISSSIAVPGAAGIPVTHRNVSYLFTVVSGHTPLTTNEFTHLAGLGGTIVVLMGIGTLPSLMAGLRGAGLASVTPVAIVENGFSHSQRTTVATLGTIVHASSACRNPAVIVIGDVVNLAGEHGLTVPNFVADAYLQTA
>NZ_CP013200.1|WP_062291222.1|3672150_3673317_+|uroporphyrinogen-III-synthase
MSETPQLSSPHLDQPLRGFRIGVTAHRRAGDLIDALERRGAQVQHAPALKIAPVEDDEALRAETAAVIAAAPDIVMVTTAYGMRRWAEAADVAGQGEELLATLASSSIYVRGPKARGAVRAAGLDDDGISSDETTATLTDLVISAGVAGKTVAVQVHGYTDVAALTRLREAGATVLTVTPYRWVNAEEGDKLPQLIDAVINKEIDVLTFTSAPAVDAVLSAADALGRGEQFRAALRGIDPSAAGTSTAGIGGVVCAVVGPVTAAPLIQAGVVPLMPERFRMGALIRLVCEYLEKTGVLRAESAGSVLEVRGQSLLVNGRPVPVAPAPLQLLKLLMGAGGGVLSPSELAAGSGSLEGDHALHMTISRLRAALPDASIVETVVKRGYRLR
>NZ_CP013200.1|WP_062291224.1|3673395_3674103_+|deoxyribose-phosphate-aldolase
MTANSPFAANQPGEELASYIDHTLLAPEASHADIVRLCKEAAEHHFKSVCVNPIWVEAAKKALLGTGVLTCTVVGFPLGTHNTDVKVFEARGATMDGADEIDMVINIASARALNKDALVSDISAVAEVVHEADSLLKVIIETSLLSDDEKILACQAALEAGADFVKTSTGFNGGGATAQDVALMRETVGPDLGVKASGGVRTREKALEMIAAGATRIGTSSGIAIVTGGTGTTSY
>NZ_CP013200.1|WP_062293910.1|3674169_3674412_+|hypothetical-protein
MGSGGTVSSTRYQGENSLVQSIVLFVVFLALFLGGIFAFSYWSLESFAHAFIPAGLGLGLCALAFWFPMTILGRTDSAGE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013200_4	4.1\|1970376\|35\|NZ_CP013200\|CRISPRCasFinder	1970376-1970410	35	NZ_CP015203	Rhodococcus sp. 008 plasmid pR8L1, complete sequence	583161-583195	10	0.714
NZ_CP013200_4	4.1\|1970376\|35\|NZ_CP013200\|CRISPRCasFinder	1970376-1970410	35	NZ_CP046100	Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence	121885-121919	11	0.686

1. spacer 4.1|1970376|35|NZ_CP013200|CRISPRCasFinder matches to NZ_CP015203 (Rhodococcus sp. 008 plasmid pR8L1, complete sequence) position: , mismatch: 10, identity: 0.714

ggtagccggggccgcatcagggttcgggagatcag	CRISPR spacer
gaaggccgggcccgcatccgggttcgggaactgga	Protospacer
*. .****** ******* **********. * ..

2. spacer 4.1|1970376|35|NZ_CP013200|CRISPRCasFinder matches to NZ_CP046100 (Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.686

ggtagccggggccgcatcagggttcgggagatcag	CRISPR spacer
caaggccgggcccgcatccgggttcgggaactgga	Protospacer
 . .****** ******* **********. * ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1266660 : 1275567

uncultured_virus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062286689.1\|1266660_1267641_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	1.7e-63	40.4
WP_062286690.1\|1267633_1268692_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_062286691.1\|1268688_1269444_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.1e-12	26.4
WP_062286692.1\|1269440_1270253_-	ABC transporter permease	NA	NA	NA	NA
WP_062286693.1\|1270249_1271119_-	ABC transporter ATP-binding protein	A0A2R8FFL6	Cedratvirus	2.7e-15	30.3
WP_038464523.1\|1271447_1271744_+	co-chaperone GroES	A0A221S4M3	uncultured_virus	6.2e-17	47.4
WP_062286694.1\|1271830_1273435_+	chaperonin GroEL	A0A219YK78	uncultured_virus	3.5e-154	53.8
WP_062293039.1\|1273674_1275567_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.8e-69	32.3

DBSCAN-SWA_2

2112780 : 2141855

Arthrobacter_phage(40.0%)

integrase,transposase

attL 2129659:2129673|attR 2145826:2145840

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_129587218.1\|2112780_2113924_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	1.0e-22	32.4
WP_062287887.1\|2113874_2114768_-	HipA domain-containing protein	NA	NA	NA	NA
WP_062287891.1\|2115512_2115779_+	hypothetical protein	NA	NA	NA	NA
WP_062287894.1\|2115782_2116400_+	hypothetical protein	NA	NA	NA	NA
WP_129587219.1\|2116443_2117691_+	hypothetical protein	NA	NA	NA	NA
WP_062287901.1\|2117779_2118613_+	hypothetical protein	NA	NA	NA	NA
WP_062287905.1\|2118702_2119140_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4B2E0	Arthrobacter_phage	1.5e-27	44.7
WP_062292909.1\|2121004_2121733_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	9.3e-22	29.8
WP_062286435.1\|2121780_2123307_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_160320809.1\|2124055_2124220_+	hypothetical protein	NA	NA	NA	NA
WP_129587220.1\|2124567_2125233_-	hypothetical protein	NA	NA	NA	NA
WP_062287911.1\|2125302_2125785_-	hypothetical protein	NA	NA	NA	NA
WP_062287915.1\|2126008_2126803_+	hypothetical protein	NA	NA	NA	NA
WP_160320810.1\|2127242_2130932_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
2129659:2129673	attL	NA	NA	NA	NA
WP_062287922.1\|2131554_2131746_+	hypothetical protein	NA	NA	NA	NA
WP_062287925.1\|2131735_2132314_+	hypothetical protein	NA	NA	NA	NA
WP_062287928.1\|2132542_2133649_-	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_160320811.1\|2135078_2135288_+	hypothetical protein	NA	NA	NA	NA
WP_062287936.1\|2135264_2135813_-	hypothetical protein	NA	NA	NA	NA
WP_160320812.1\|2136202_2137192_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4B2E0	Arthrobacter_phage	7.8e-72	46.2
WP_062287939.1\|2137364_2137586_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_129587221.1\|2137774_2138014_-	hypothetical protein	NA	NA	NA	NA
WP_160320813.1\|2138572_2139403_+\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF08	Clostridium_phage	9.6e-07	28.5
WP_129587223.1\|2139810_2140452_+	hypothetical protein	NA	NA	NA	NA
WP_062287951.1\|2140574_2141855_+\|integrase	site-specific integrase	NA	NA	NA	NA
2145826:2145840	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013200

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection