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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011965 Bifidobacterium longum subsp. longum strain CCUG30698 chromosome, complete genome 5 crisprs cas3,Cas14u_CAS-V,c2c9_V-U4,DEDDh,cas14j,WYL 0 2 4 0

Results visualization

1. NZ_CP011965
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011965_1 167095-167463 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011965_2 284965-285050 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011965_3 1565518-1565598 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011965_4 1833004-1833078 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011965_5 1966538-1966623 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011965_1 1.5|167356|24|NZ_CP011965|CRISPRCasFinder 167356-167379 24 NZ_CP047177 Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence 98015-98038 3 0.875
NZ_CP011965_1 1.5|167356|24|NZ_CP011965|CRISPRCasFinder 167356-167379 24 NZ_CP013110 Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence 1789555-1789578 4 0.833
NZ_CP011965_4 4.1|1833028|27|NZ_CP011965|CRISPRCasFinder 1833028-1833054 27 MH616696 Microviridae sp. isolate ctde198, complete genome 253-279 4 0.852
NZ_CP011965_4 4.1|1833028|27|NZ_CP011965|CRISPRCasFinder 1833028-1833054 27 MH572323 Microviridae sp. isolate SD_SC_101, complete genome 262-288 4 0.852

1. spacer 1.5|167356|24|NZ_CP011965|CRISPRCasFinder matches to NZ_CP047177 (Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

atcggttccgcagccggctgccgg	CRISPR spacer
atcggttccgcagcgggcagccgt	Protospacer
************** *** **** 

2. spacer 1.5|167356|24|NZ_CP011965|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 4, identity: 0.833

atcggttccgcagccggctgccgg	CRISPR spacer
gtcggttccgccgccggctgcctc	Protospacer
.********** **********  

3. spacer 4.1|1833028|27|NZ_CP011965|CRISPRCasFinder matches to MH616696 (Microviridae sp. isolate ctde198, complete genome) position: , mismatch: 4, identity: 0.852

cgtctcttttgggacaaccgggacaga	CRISPR spacer
cgtctcttgtgggacaactgggaaaaa	Protospacer
******** *********.**** *.*

4. spacer 4.1|1833028|27|NZ_CP011965|CRISPRCasFinder matches to MH572323 (Microviridae sp. isolate SD_SC_101, complete genome) position: , mismatch: 4, identity: 0.852

cgtctcttttgggacaaccgggacaga	CRISPR spacer
cgtctcctttgggacaactgggaaaaa	Protospacer
******.***********.**** *.*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 49140 : 122345 56 uncultured_Mediterranean_phage(15.38%) protease,transposase,tRNA,integrase attL 117634:117693|attR 123621:123719
DBSCAN-SWA_2 434253 : 473983 27 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_3 1330689 : 1375601 60 Bifidobacterium_phage(45.0%) tRNA,integrase,holin,portal,tail,coat,terminase attL 1325405:1325422|attR 1365250:1365267
DBSCAN-SWA_4 2421524 : 2431470 9 Mycobacterium_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage