CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014754	Marinobacter sp. LQ44 chromosome, complete genome	7 crisprs	DEDDh,WYL,cas3,RT,csa3,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	0	9	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014754_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014754_1

31490-31666

Orphan

Consensus_repeat	Method
AAAAGTGGGTCAGACCCCATGCGGGGTCAGACCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP014754_1

>merge|NZ_CP014754|1|31490-31666|CRISPRCasFinder
ACTAAGGGGTCTGTCCCCGAACGGGGACTGACCCCATTTTGGAACAGCGGACTCCGGAGAATGACCGAGGTAAAAGTGGGTCAGACCCCATGCGGGGTCAGACCCGATAGACGCAATGGGTTCTAGTCCCTGCATCAACGGGCAAAAGTGGGTCAGACCCCATTCGGGGTCAGACCC

>NZ_CP014754|1|1|31490-31666|CRISPRCasFinder
ACTAAGGGGTCTGTCCCCGAACGGGGACTGACCC	CATTTTGGAACAGCGGACTCCGGAGAATGACCGAGGT
AAAAGTGGGTCAGACCCCATGCGGGGTCAGACCC	GATAGACGCAATGGGTTCTAGTCCCTGCATCAACGGGC
AAAAGTGGGTCAGACCCCATTCGGGGTCAGACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014754.1\|WP_058089626.1\|32853_35478_+\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	unknown	unknown	gnl\|CDD\|236445
NZ_CP014754.1\|WP_058089632.1\|42650_43940_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|274391
NZ_CP014754.1\|WP_058089619.1\|23383_24220_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP014754.1\|WP_058089629.1\|38078_39491_+\|TIGR03013-family-PEP-CTERM/XrtA-system-glycosyltransferase	unknown	unknown	gnl\|CDD\|274390
NZ_CP014754.1\|WP_058089617.1\|21962_22829_-\|RibD-family-protein	unknown	unknown	gnl\|CDD\|224896
NZ_CP014754.1\|WP_058089877.1\|41998_42658_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|274392
NZ_CP014754.1\|WP_082888528.1\|21002_21962_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP014754.1\|WP_058089622.1\|27387_27651_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_058089878.1\|43970_44870_+\|DUF3473-domain-containing-protein	unknown	unknown	gnl\|CDD\|274385
NZ_CP014754.1\|WP_058089618.1\|22948_23365_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378971
NZ_CP014754.1\|WP_058089630.1\|39555_40200_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|132072
NZ_CP014754.1\|WP_058089620.1\|24537_25746_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP014754.1\|WP_058089627.1\|35585_36764_+\|2-methylaconitate-cis-trans-isomerase-PrpF	unknown	unknown	gnl\|CDD\|131387
NZ_CP014754.1\|WP_058089623.1\|29829_30510_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP014754.1\|WP_058089624.1\|30528_31416_+\|methylisocitrate-lyase	unknown	unknown	gnl\|CDD\|183086
NZ_CP014754.1\|WP_058089625.1\|31714_32848_+\|2-methylcitrate-synthase	unknown	unknown	gnl\|CDD\|183463
NZ_CP014754.1\|WP_058089633.1\|44866_46024_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133061
NZ_CP014754.1\|WP_058089621.1\|25835_27374_+\|glucan-biosynthesis-protein-G	unknown	unknown	gnl\|CDD\|237328
NZ_CP014754.1\|WP_058089616.1\|19071_21003_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP014754.1\|WP_058089631.1\|40241_41759_+\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|274386

Protein	Function_ID	Function_description	E-value
NZ_CP014754.1\|WP_058089626.1\|32853_35478_+\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NZ_CP014754.1\|WP_058089632.1\|42650_43940_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|274391	TIGR03016, hypothetical_protein, uncharacterized protein, PEP-CTERM system associated. Members of this protein family are found predominantly in exopolysaccharide biosynthesis operons marked by the presence of the EpsH-family putative exosortase and presence in the genome of the PEP-CTERM protein sorting signal. Members of this family may be distantly related to the EpsL family modeled in TIGR03014.	6.47204e-12
NZ_CP014754.1\|WP_058089619.1\|23383_24220_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	1.27593e-153
NZ_CP014754.1\|WP_058089629.1\|38078_39491_+\|TIGR03013-family-PEP-CTERM/XrtA-system-glycosyltransferase	gnl\|CDD\|274390	TIGR03013, EpsB_2, sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protein found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecaprenyl-phosphate galactose phosphotransferase", which comes from relatively distant characterized enterobacterial homologs, and is considerably more specific than warranted from the currently available evidence.	0
NZ_CP014754.1\|WP_058089617.1\|21962_22829_-\|RibD-family-protein	gnl\|CDD\|224896	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism].	3.43916e-48
NZ_CP014754.1\|WP_058089877.1\|41998_42658_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|274392	TIGR03018, pepcterm_TyrKin, exopolysaccharide/PEP-CTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.	3.82256e-72
NZ_CP014754.1\|WP_082888528.1\|21002_21962_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	7.84504e-21
NZ_CP014754.1\|WP_058089878.1\|43970_44870_+\|DUF3473-domain-containing-protein	gnl\|CDD\|274385	TIGR03006, pepcterm_polyde, polysaccharide deacetylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	2.24076e-152
NZ_CP014754.1\|WP_058089618.1\|22948_23365_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378971	pfam12844, HTH_19, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.	8.78576e-06
NZ_CP014754.1\|WP_058089630.1\|39555_40200_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|132072	TIGR03027, pepcterm_export, putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.61201e-66
NZ_CP014754.1\|WP_058089620.1\|24537_25746_+\|hypothetical-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	9.54092e-06
NZ_CP014754.1\|WP_058089627.1\|35585_36764_+\|2-methylaconitate-cis-trans-isomerase-PrpF	gnl\|CDD\|131387	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126. [Energy metabolism, Fermentation].	0
NZ_CP014754.1\|WP_058089623.1\|29829_30510_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	3.70361e-46
NZ_CP014754.1\|WP_058089624.1\|30528_31416_+\|methylisocitrate-lyase	gnl\|CDD\|183086	PRK11320, prpB, 2-methylisocitrate lyase; Provisional.	0
NZ_CP014754.1\|WP_058089625.1\|31714_32848_+\|2-methylcitrate-synthase	gnl\|CDD\|183463	PRK12351, PRK12351, methylcitrate synthase; Provisional.	0
NZ_CP014754.1\|WP_058089633.1\|44866_46024_+\|glycosyltransferase	gnl\|CDD\|133061	cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.	5.68775e-109
NZ_CP014754.1\|WP_058089621.1\|25835_27374_+\|glucan-biosynthesis-protein-G	gnl\|CDD\|237328	PRK13274, mdoG, glucan biosynthesis protein G; Provisional.	0
NZ_CP014754.1\|WP_058089616.1\|19071_21003_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.09023e-33
NZ_CP014754.1\|WP_058089631.1\|40241_41759_+\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|274386	TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	5.42324e-112

>NZ_CP014754.1|WP_058089624.1|30528_31416_+|methylisocitrate-lyase
MANQHSPGARFRKALKENQPLQIVGTINAYTAMMAERVGHQAIYLSGGGVANASYGLPDLGMTTMNDVVEDVRRITAATEVPLLVDIDTGWGGAFNIGRTIREMERAGAAAVHIEDQVAQKRCGHRPNKEIVSKEEMVDRIKAAADARQDKDFFIMARTDAFQKEGLEAAIDRAKACIEAGADGIFAEAVHELSDYKAFAEAIDAPILANITEFGATPLYNRSELADAGAAMVLYPLSAFRAMNKAALAVYQNILEKGDQKDVVDLMQTRMELYDFLNYHDFEQKLDQLFAQKKD
>NZ_CP014754.1|WP_058089623.1|29829_30510_+|GntR-family-transcriptional-regulator
MVQAPAQVHTRADEAFDCLQTAIVMGDLAPGEKIGEVELCSRFNLTRGPLREALGRLESRGLLVRRPHAGVKVVSVSAEELLELYRIREVMEGLAARQAAERMTDEEIRDLKATLDSHEKMIEEAQGQAYYQAEGDYDFHHRIATGSRNTKLAQMLLGDLYYMVRMYRYRLSTSAGRPHMALGEHRRIVEAIAQRDGELAEFLMKRHINAARQNIEQKIQQGVLTI
>NZ_CP014754.1|WP_058089622.1|27387_27651_+|hypothetical-protein
MDAMNQYQLLGRLLVYLEACGLELNTATFDTALKMLSDLQQSAAQPEDFDWLLERIPHYFRIAEDALPKVAPPFQRGSIGYYAHGSS
>NZ_CP014754.1|WP_058089621.1|25835_27374_+|glucan-biosynthesis-protein-G
MRSGTVWLVVLGLMSFTTVTAAEFRFEDVVEQARERAGSAYQAPDTIPDFMRNLSYQDYQSIRFDPEKNLWKEASSKFQVMLVPAGKFYTRPVNIYVVDAEGVSKLEFDKSLFNMPDSELSKRVPADLGYAGFKLTFPFDGPDIANQFLVFAGASYFRGVSKDTAFGLSARGVAVDTGLPSGEQFPDFTDFWLVRPARNSEEMRVYALLDGPSLTGAYQFTVYPKEETRLDVKARLFIRDDIELLGLAPLTSMFFYGENTPRPDGEWRPQVHDSDGLLIHDGESGEWLWRPLINPKRLATSFHQTSRIAGFGLIQRDTEFRHFEDLEARYERRPSAWVSMDDDWGAGDVVLVEIPTDDETNDNIVAFWSPDDKVTGGAERSLEYSMTFGGPDVARHPGGKAVNTFIGAGDRIGGGDQSGAYRVLVDFAGGKLADIEPDAPVVSKVSGGDGVEVLEHFVEWVQPENKWRLSILARPAKDSILQLRGYLELDDQVVTETWTYSLPPGAGPGSQR
>NZ_CP014754.1|WP_058089620.1|24537_25746_+|hypothetical-protein
MAHPLVAKRHGPQLSSIALFSCALAVFSVQGGASELSLSEQNALSTQEALFAQDRLKATREHWLRSKFEFSGRTNDDSDRLDGTLNLGLKNMFGESHRADLRYADSKTYRVSNERKVLGFGYGLPVGLNQLRMELTNTAYDEVSRVEGARYQKAGRIRDVAVTGSRPLFSVSGYSIRGRAGYNSVTRSWTRQSDENHRNHYEVSTLGFEALGRHDLVGGFSLSSGFRAVTGIEAEAERTAVGYQDSQDDQFGRMLFTASLDREMLDWQWDLEGQYQIASADIPGSHRLQVAGSALSTGFSGQSLSVAEGGWLRLGSRSPTFNVPFFPQMLSSVRLSVLRGWVPDVSFQQDQSGHVTSGELSLGLSARKFSADVSVGRVLGTTTEAIVVPDHPDVRLSMSLKI
>NZ_CP014754.1|WP_058089619.1|23383_24220_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MIKKCLFPVAGYGTRFLPATKAMPKEILPIVNKPLVQYGVEEAAEAGIHEFGFVTGRGKRAIEDHFDISYELEHQIAGTGKEGLLTSIRDLITNNTFAFTRQNEMKGLGHAILTGRNLVGDNPFAVVLADDFCVGPEGGDGVLAQMVKLYNQFRCSIVAIEEVPQDETHKYGVIAGESMKDGLYRITDMVEKPAPEDAPSNLAIIGRYILTPDIFDIIESTSPGKNGEVQITDALLEQAKNGCVLAYQFKGQRFDCGSIDGFVEATNYVYENIYKKGK
>NZ_CP014754.1|WP_058089618.1|22948_23365_+|helix-turn-helix-transcriptional-regulator
MRYLQSFHRRLRQLRQTGQLSLADVANMCGVDEARVGSWEATDPKQRSYPGVSELLDVCLKTETPLDQLLDMDDGGDSGQLELPGLAFSNSDDLSVALKELERELNRLQLSEEELELLRRFRKATAENRRMVLQLLGR
>NZ_CP014754.1|WP_058089617.1|21962_22829_-|RibD-family-protein
MATLDTDTAWKLILNASNRSNVTLPLPGTSQPALRINGKSWELVHQATEDARNLISLFLPLCQPIRRPAGNHVIGQLGQSLDGRIATVTGCSRFINGDDGITHLHRIRALCDAVVVGAGTAATDNPRLTVRRANGPNPVRVVIDRHNRVPRSHHLFTDNAAPTLHLVAGEYDPAQKPARIGQVTTIPCLGAADDPSPVPPEHILQVLQDYGLRKIFIEGGGVTVSSFLKAGLLDRLHVMVAPMIIGSGRPAFSLPEIDQLDDALRPRAQLVNLGSDMLFDLAFERRWN
>NZ_CP014754.1|WP_082888528.1|21002_21962_+|flippase-like-domain-containing-protein
MRQRPWPKLLLRWAATLIILVLVLRFVDLSGLIARLRSISPSLIALALAVSIFQVVLSAWRWRYTAGRLGVSVPMTFAVREYYLATFLNQVLPGGVMGDVNRAWRHSRAQGQRAPERSGQLSAVHAVVLERLSGQLVLFPVVLLAVVALWSAGAFSGQRVAAQLSLNPVYWLLPPLLVGVGIWLLWVSGRLASLRRYLGRLGADLRRAFAGWRNGSVQLFTSLAVLGTYLTVFVLLALGMGLATDASSLFLTAALCLLLLLAMVVPITVSGWGVREGAAALLWPAVGLPAEQGVAISIGYGALIFLASWPGALVLLKRA
>NZ_CP014754.1|WP_058089616.1|19071_21003_+|glycosyltransferase-family-4-protein
MPASDLWFVVPGDPDQNTGGYRYVQRLVAASRQAGVNARVQGLAGCFPRPDQTATNAMQEFLTSLPDNTLVVLDGLAMGAMPDVLERHGTRLRLVALVHHPLADETGLSQEQLAWFREAERQSLAQVGRVVTTSEYTAHRVQQEYGVPSWKITTAQPAVDALFFQMERDHLDKPMRLLCVGHLSPRKVQHQLVDALATLRELPWQCTLVGAEDRDPDYALALRSAIARHGLADRIQLLGELSEPALEEAYRRADLFVFPSLYEGYGMVIDEALAAGLPVLSSDGGALALTTSKPGARNFPAGNAKVLASELRNLLTNTADFSDLARRARAHRSDIRQWSDTTREFLGSLGISVEGDPARFSGQWLEAREPADHAARSRALTDTLANWLTVEYNTKAAGKPAGDPLHLVDIGSGRGSNPGYLIPRLPVPQRWTLIEPDQHLLGLACHRVEALDAPAVPLMRELTPHNLDELLPDDAALVTASALIDLVSEHWLRAFSSAVVRRRAGVLVVISYSGHFDLAPSHASDALVQELVNQHQHGDKGSGAALGPEATGVLEKLLREAGYTVTVEQSQWHLSPGQGGTSAELITMLMTGWADAACQQNPAAEAEIRTWLADRQDQLARHELRVVVDHLDLLGLPDSGLPA
>NZ_CP014754.1|WP_058089625.1|31714_32848_+|2-methylcitrate-synthase
MAEAKKLSGAGLRGQVAGETALCTVGKTGTGLTYRGYDVTDLAANAQFEEVAYLLLRGKLPNQAELNAYKAKLKSLRNLPDALKLVLEQIPKDAHPMDVMRTGCSMLGNLETENDFSEQDDKIDRMLATFPAIITYWYRFAHEGVRIDTANSECDSIGGLFLELLHGKKPSELHERVMNVSLILYAEHEFNASTFTARVCASTLSDIHSCVTGAIGSLRGPLHGGANEAAMELIQRFQTPEEAEAGLMGMLERKEKIMGFGHAIYKESDPRNAIIKQWSEKLAKEVGDTVLYPVSVRCEEVMWREKKLFCNADFFHASAYHFMGIPTELFTPIFVMSRVSGWTAHVKEQRANNRIIRPSADYTGPEHQDWLPIEERS
>NZ_CP014754.1|WP_058089626.1|32853_35478_+|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD
MNTEFRKPLPGTDLEYYDTRQAVEAIQPGAYAKLPYTSKILAEQLVRRCDKESLTDSLKQLIERRRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPAKVNPVVQTQLIVDHSLAVEAPGFDPDAFEKNRAIEDRRNEDRFHFINWTRTAFKNVDVIPAGNGIMHQINLEKMSPVIQNRPDEDGHPIAFPDTCVGTDSHTPHIDALGVIAVGVGGLEAETVMLGRPSMMRLPDIVGVKLTGKRQPGITATDIVLAITEFLRKERVVGAYLEFFGEGASSLTIGDRATISNMTPEYGATAAMFYIDEQTTDYLKLTGREPEQVDLVEKYARETGLWASEMTEAQYERVLEFDLSTVVRNVAGPSNPHRRVATSDLHDRGIAVNLDKALEEEKKGLMPDGAVIIAAITSCTNTSNPRNVVAAGLLAKKANELGLVRKPWVKSSFAPGSKVARLYLEEAGLLPELEKLGFGIVAYACTTCNGMSGALDPKIQQEIIDRDLYSTAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTVRFDIERDALGYSKDGKPVTLKDLWPSDEEIDRIVGEFVKPEQFKQVYIPMFNLDEAEQAKSPLYEWRPQSTYIRRPPYWEGTMAAERALKGMRPLAILPDNITTDHLSPSNAIMMDSAAGEYLHKMGLPEEDFNSYATHRGDHLTAQRATLANPKLFNEMVRDENGEVVQGSLARVEPEGKTMRMWEAIETYMERKQPLIIIAGADYGQGSSRDWAAKGVALAGVEAIVAEGFERIHRTNLIGMGVMPLQFEEGTTRHTLQLDGTETYDVEGKAAPGAKLELVIHRKTGEVDRVPVICRLDTAEEVTVYTAGGVLQRFAQDFLASEGAA
>NZ_CP014754.1|WP_058089627.1|35585_36764_+|2-methylaconitate-cis-trans-isomerase-PrpF
MSFPQQIKVPATYMRGGTSKGVFFRLQDLPEPCQVPGEARDKLLLRVIGSPDPYEKQIDGLGNATSSTSKTVILAAPTQPDHDVDYLFGQVSIDKPFVDWSGNCGNLTAAVGAFAINGGFVAKDRIPDNGVCTVRIWQANIQKTIVAHVPITNGEVQETGDFELDGVTFPAAEVKIEFMDPADGEGAMFPTGNLVDELEVPGVGTLKATMINAGIPTIFLNAEDIGYKGTELQNDINSDPKALAMFETIRAHGAVKMGLIKDVAEAANRQHTPKVAFVAKPVDYVSSSGKQIKAADIDVLVRALSMGKLHHAMMGTAAVAIATASAIPGTLVNLAAGGGDRTEVTFGHPSGTLGVGAEAKEVNGQWTATKAIMSRSARIIMEGWVRVPGDCF
>NZ_CP014754.1|WP_058089629.1|38078_39491_+|TIGR03013-family-PEP-CTERM/XrtA-system-glycosyltransferase
MAHVRLFRHYIHLPFVILGLIDLVVTGFAFGLAVFFRFFGEVGFFLEHLFFVFPSIVAFSLFNLLVMIALGVHQSRVEEGMSGMMLRTIMAMILAIPVHGFAYFVADDWLWYLGSFGLLTSATVLAIFSLGIVRVLFFALVGKEAFKRRVLVLGAGHRARQLLEDLTTPFNRKGFTLDGFVPLPDEPIEVGDQHLINLPTSLHDYVLRHPVREIVVAVDDRRRGLPMEDLLECKMEGVSIIDGANFYERESRKVALEMISHGWLVFSDGFSVSSVYGAGKRTLDILAAGTLLLATFPIMILTALAIKLEDGFKAPVIYSQERVGLNNKVFKVHKFRSMITDAEKDGAVWAKKNDTRVTRVGEFIRKVRIDELPQIFNVLNGTMAFVGPRPERPVFVAQLSEKIPFYSERHRVKPGLTGWAQLCFAYADNEEDTREKLRYDLYYIKNQSLLLDLLVIIQTVEVVLFKKGSR
>NZ_CP014754.1|WP_058089630.1|39555_40200_+|sugar-ABC-transporter-substrate-binding-protein
MSRKYLTQGLFVSFMAVALATGCAGPSASSPDKIQRALALDTRDSVDQYVLGATDVVRVSVWRNEDLSISVPVRPDGKISVPLVGDVQASGRTPEELASSIRASLAEYIREPQVSVVVTSMGSHEFTDRVRVTGAVRQPVSIPHRSGMTVLDMFLNAGGANEFAALNKSMLYRKMGSEVVAIPVKLDDILSKGQVETNYSMRPGDILTIPERSF
>NZ_CP014754.1|WP_058089631.1|40241_41759_+|lipopolysaccharide-biosynthesis-protein
MALPLSQLPQEIIREVRQRKGLAFLLFVVVSFAVLGAGFIWPYKYQADTIIFVDDRNIIAPLMEGRAVTTKINDRTSAARELLMSRTLIERVASDPEIYRNASMDPDALEGRIAKIRSGLSVRPRGDSYFSIGFSSTSQMEAFRVAQKLGQVFIEETKDRKRSESRNAYDFIDKQVKSYEQQLTQAENRLKQFLSENTDGTEQEANSRMAQLRNQLELAQLEKEELRTRIASLQGQLNNIRPTIRQGRTEDAFRERIRTLEERLDALRLQYHDTYPDIVITQEQLTELKRQRDIAAAQQGSATSLDGEEAVNPLYQELSAALSKTRADMATIDTRINSLQRLMEQQTQRMERIQANKAQYSELTRDMEVNREIYDDLLKRREKARVSMHLDIEGQGLNYRINEAAQFPRTPSGPQFSMFAMAGLFLGLAAPFGAVAGLLQVDPRIRARKQLEDGIGLPVLIEIPEVRTPFEKRRDRRVTMMVGIFVVLTAAVYITIVVLAQLGVI
>NZ_CP014754.1|WP_058089877.1|41998_42658_+|polysaccharide-biosynthesis-protein
MQEPRRLTPDDLDERRIIYPESRNRTLVNRFRDLRTKLLELSGGNNFTLVVSGASSGAGSSFVALNLAAAFAFDQAKTALIIDCNLRDPSLHTTLDVLPETGLTDFLDDPDYDIARILYPTGIPRLRLIPAGSRRETPSEFFTSFRMKQFLQAVRRRYPDRFIVLDTAPISESPDARILTELCDYAMLVVPHGKITATTAEHAATAFNPDKFVGAVING
>NZ_CP014754.1|WP_058089632.1|42650_43940_+|outer-membrane-beta-barrel-protein
MDSRQGAGMPHSRILAIGLLLACSGAATTAQGNSEITGGLDTRFTDNARKASSGETSDMETRAYIRAGYRTDPGRCNADFTGTLGYSLWHDNSFDDEAFGEMDFTGDCELANRFYWDVSNNLREVNQDATQSNTPDNRTRKNVFSTGPRYLLRVNDTNWLNLSARYENVEFSEPEESDSERYIGSVAWNHIVSQTLTAGVSTSYSRTEYDTDAEVDVKSARLTFSNVWATTRLSGAIGVSEIETRFGSTTQSSDGLIGELDLTRTITPSLDWYLRGARELTDRTSSFDIRFGEFEFNLRDSISVETTTLSTGINQRYSDRSSLTVDVYASQADYLESPEREDKSGLNARYSRPFTELASGYASIGYDYTKFQSDQADDRTLRLEAGTEYQATRDFNLVAKVGHERKVSDVPTREYDENWVLVGVEYRFR
>NZ_CP014754.1|WP_058089878.1|43970_44870_+|DUF3473-domain-containing-protein
MTEQIRNALTIDVEDYFQVAALAEAVKYDDWSSMEYRVEANTDRILGLFERAGVKATFFTLGWVAERSPNLVKRIADAGHEVASHGYSHQLIYNQTPDVFQEETIRSKAILEDILGEPVTGYRAASYSITNQSRWALDILAEQGFTWDSSIFPVHHDRYGMPGTPRWPHRLMTDKGYELAEFPLSTLKLPGYTLPIAGGGYFRLFPYWFSKFGLGSINRQGKPFVFYLHPWEVDPGQPRLDVKWFSRFRHYNNLDVCEQRLAKLLRHFRFTTMSNVLKDQGVLDTQTKPSEAFQTVGAA
>NZ_CP014754.1|WP_058089633.1|44866_46024_+|glycosyltransferase
MMEFVFWASFALLFYIYFGYPLAVKALAMLKPNSIAANDDYLPKVSILIAAYNEAKDIEATLRNKLALDYPQEKLEVLVISDESEDGTDRIVEEVAAAADIPIRLFRQVPRQGKTAGLNTLVPKANGDILLFSDANSQWDTQAVRKLCRNFADPEVGYVTGKMVYVHADGSMVGDGCSAYMKYENWLRDQETRIGSIVGVDGGIDAMRKELYQPLKADQLPDFVQPLTVVEQGYRVVYEPEALLKEEALSDGSSEFSMRVRVSLRALWALKDMKHLMNPAGDPIFAWQLISHKLLRYAAFAPMVTLALAAIYLAPINGFYALAATGYALFLYLAWSGHKKENEGQALSTLYALPYYFMLLNLASFQAFVAFSKGEKKVIWNPRKG

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Crispr_ID: NZ_CP014754_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014754_2

938766-938873

Orphan

Consensus_repeat	Method
GGGTGCCTGGTGGGTCAGACCTCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014754_2

>merge|NZ_CP014754|2|938766-938873|CRISPRCasFinder
GGGTGCCTGGTGGGTCAGACCTCGTGGGGTCAGACCCTGGCCGCGTGTTTGTTCGGCCGCGTTGCTTGTGCCTTTGTCTGATGGGGTGCCTGGTGGGTCAGACCCCGT

>NZ_CP014754|2|2|938766-938873|CRISPRCasFinder
GGGTGCCTGGTGGGTCAGACCTCGT	GGGGTCAGACCCTGGCCGCGTGTTTGTTCGGCCGCGTTGCTTGTGCCTTTGTCTGATG
GGGTGCCTGGTGGGTCAGACCCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014754.1\|WP_058089952.1\|935630_936821_-\|UDP-N-acetylglucosamine-4,6-dehydratase	unknown	unknown	gnl\|CDD\|187548
NZ_CP014754.1\|WP_058089950.1\|937802_938741_-\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226288
NZ_CP014754.1\|WP_058089953.1\|934483_935623_-\|LegC-family-aminotransferase	unknown	unknown	gnl\|CDD\|275034
NZ_CP014754.1\|WP_058089990.1\|947272_948310_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_058089947.1\|942161_943643_-\|capsule-assembly-Wzi-family-protein	unknown	unknown	gnl\|CDD\|379441
NZ_CP014754.1\|WP_058089943.1\|949434_949719_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_058089948.1\|941625_941991_-\|GxxExxY-protein	unknown	unknown	gnl\|CDD\|275083
NZ_CP014754.1\|WP_058089956.1\|930595_931651_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|133048
NZ_CP014754.1\|WP_058089958.1\|928657_929896_-\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|225153
NZ_CP014754.1\|WP_058089946.1\|944548_945769_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226459
NZ_CP014754.1\|WP_058089991.1\|944055_944520_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_058089949.1\|938909_941465_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|132073
NZ_CP014754.1\|WP_058089942.1\|949810_950209_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_058089951.1\|936895_937651_-\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|367147
NZ_CP014754.1\|WP_058089957.1\|929892_930603_-\|acylneuraminate-cytidylyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133006
NZ_CP014754.1\|WP_058089944.1\|948359_949367_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270388
NZ_CP014754.1\|WP_058089945.1\|946246_947134_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP014754.1\|WP_058089992.1\|933839_934475_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|100050
NZ_CP014754.1\|WP_058089954.1\|932838_933843_-\|N-acetylneuraminate-synthase	unknown	unknown	gnl\|CDD\|274655
NZ_CP014754.1\|WP_058089955.1\|931666_932842_-\|UDP-N-acetylglucosamine-2-epimerase-(hydrolyzing)	unknown	unknown	gnl\|CDD\|274654

Protein	Function_ID	Function_description	E-value
NZ_CP014754.1\|WP_058089952.1\|935630_936821_-\|UDP-N-acetylglucosamine-4,6-dehydratase	gnl\|CDD\|187548	cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs. UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.25591e-123
NZ_CP014754.1\|WP_058089950.1\|937802_938741_-\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|226288	COG3765, WzzB, Chain length determinant protein [Cell envelope biogenesis, outer membrane].	2.03464e-18
NZ_CP014754.1\|WP_058089953.1\|934483_935623_-\|LegC-family-aminotransferase	gnl\|CDD\|275034	TIGR04181, DegT/DnrJ/EryC1/StrS_aminotransferase, aminotransferase, LLPSF_NHT_00031 family. This clade of aminotransferases is a member of the pfam01041 (DegT/DnrJ/EryC1/StrS) superfamily. The family is named after the instance in Leptospira interrogans serovar Lai, str. 56601, where it is the 31st gene in the 91-gene lipopolysaccharide biosynthesis locus. Members of this family are generally found within a subcluster of seven or more genes including an epimerase/dehydratase, four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD) and a nucleotidyl transferase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analogous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar.	0
NZ_CP014754.1\|WP_058089947.1\|942161_943643_-\|capsule-assembly-Wzi-family-protein	gnl\|CDD\|379441	pfam14052, Caps_assemb_Wzi, Capsule assembly protein Wzi. Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organisation of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 1 capsule biosynthesis. It is likely to be involved in the later stages of capsule assembly. It is likely to consist of a beta-barrel structure.	2.53412e-83
NZ_CP014754.1\|WP_058089948.1\|941625_941991_-\|GxxExxY-protein	gnl\|CDD\|275083	TIGR04256, conserved_hypothetical_protein, GxxExxY protein. Members of this protein family average about 130 residues in length and include an almost perfectly conserved motif GxxExxY. Members occur in a wide range of prokaryotes, including Proteobacteria, Perrucomicrobia, Cyanobacteria, Bacteriodetes, Archaea, etc.	1.35382e-51
NZ_CP014754.1\|WP_058089956.1\|930595_931651_-\|CBS-domain-containing-protein	gnl\|CDD\|133048	cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	3.61254e-137
NZ_CP014754.1\|WP_058089958.1\|928657_929896_-\|oligosaccharide-flippase-family-protein	gnl\|CDD\|225153	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only].	1.76169e-10
NZ_CP014754.1\|WP_058089946.1\|944548_945769_-\|AAA-family-ATPase	gnl\|CDD\|226459	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only].	1.39262e-43
NZ_CP014754.1\|WP_058089949.1\|938909_941465_-\|sugar-transporter	gnl\|CDD\|132073	TIGR03028, EpsE, polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.	1.90123e-28
NZ_CP014754.1\|WP_058089951.1\|936895_937651_-\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|367147	pfam02706, Wzz, Chain length determinant protein. This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.	3.71031e-06
NZ_CP014754.1\|WP_058089957.1\|929892_930603_-\|acylneuraminate-cytidylyltransferase-family-protein	gnl\|CDD\|133006	cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.	3.89153e-89
NZ_CP014754.1\|WP_058089944.1\|948359_949367_+\|hypothetical-protein	gnl\|CDD\|270388	cd13670, PBP2_TRAP_Tp0957_like, Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold. This subfamily includes the putative periplasmic substrate-binding protein Tp0957 from Treponema pallidum, which is similar to TRAP transport systems such as SiaP (a sialic acid binding virulence factor) and TeaA (an ectoine binding protein). TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0.000339872
NZ_CP014754.1\|WP_058089945.1\|946246_947134_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	6.80583e-74
NZ_CP014754.1\|WP_058089992.1\|933839_934475_-\|hypothetical-protein	gnl\|CDD\|100050	cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.	6.77169e-49
NZ_CP014754.1\|WP_058089954.1\|932838_933843_-\|N-acetylneuraminate-synthase	gnl\|CDD\|274655	TIGR03569, ORF_8_similar_to_NeuB_family, N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.	0
NZ_CP014754.1\|WP_058089955.1\|931666_932842_-\|UDP-N-acetylglucosamine-2-epimerase-(hydrolyzing)	gnl\|CDD\|274654	TIGR03568, Polysialic_acid_biosynthesis_protein_P7, UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.	0

>NZ_CP014754.1|WP_058089950.1|937802_938741_-|lipopolysaccharide-biosynthesis-protein
MAEQTTTHYPDDEIDLRELFATLWRGKWLIIACTIISAAIGVAYALYKPNIYQASVLLAPAQDDSKASGLPGQLGGLASLAGINIGGGSSNKTVIAKETLQSRAFLTDFIHRHNLSVPLMASKSWSMSAREWVIDPSIYNQQTGEWQQDKAGKSLKPTNWDMVKRFRELLSVRDNKDTGLVTVTIASESPVAAKQWLELLIKDINEHMRQQDVREAEASIAYLEGKLRETNISGMQQVFYQLIENETRTVMLANAQREYVFKTVDPAVIPQEKSEPKRALIVILAVMLGGMLGVLGVFGGAFVQNSRKPNKA
>NZ_CP014754.1|WP_058089951.1|936895_937651_-|lipopolysaccharide-biosynthesis-protein
MSATQNQRYDDEISLIDLAATFVKRRRIFYAVFLACILAGIAYAFVTEDTYQYTSLIQIAEKGSEKFLEPPATTIATLESRWLPEQEVLYQSENGEKLPFSTSFANPENTGLIRLISESPYKYAEGVKTVHQYLIEQVQQRHNALLEREKRSLESRMRSIDQSIDVLKSGQDSGQVLAEAFDRKTRLESDLEALKAAETLVLARQGTEKTGPARKLIVVLAALLGLMGGVFVAFIAEFISAVRSAMNEESE
>NZ_CP014754.1|WP_058089952.1|935630_936821_-|UDP-N-acetylglucosamine-4,6-dehydratase
MASVLSLIGRDRELFIKDVEAQEAQLGEIIRSSRFLVLGGAGSIGQAVTKEIFKRNPAKLHVVDISENNLVELVRDIRSSFGYIPGDFRTFALDIGSIEYDAFFKADGGYDYILNLSALKHVRSEKDPYTLMRMVDVNVFNTDKTLQQAIDAGARKYFCVSTDKAANPVNMMGASKRIMEMFLMRRSLQMDISTARFANVAFSDGSLLHGFNQRLEKRQPIVAPNDVRRYFVTPKESGELCLMSCIFGDNRDIFFPKLSEELHLISFADIAVKYLAEKGLEPVLCSDEDEARELAKTLPEQGKWPCLFTSSDTTGEKDFEEFFTDNETLDMERFENLGIIKNEADFDEQMLAEFEGRIAEMKREMAWSKQDLVDLFHGMIPDFGHKETGKYLDSKM
>NZ_CP014754.1|WP_058089953.1|934483_935623_-|LegC-family-aminotransferase
MSDQLIRFVRDYFGTNEFIPLHAPVFPGREKEYVADTIESTFVSSVGAYVDRFEQDMASYTGSPKAVATVNGTAALHIALKLAGVEAGDLVITQPLTFVATCNAIAYCNAEPVFIDVDRDTLGLSATAMEAWLDEHAILDSEGVCRTRADHKVIRACVPMHTFGHPADLDGLMSVTRRWNIALVEDAAESLGSYYKGKHTGTFGALGTLSFNGNKIMTTGGGGMILAGEALATRAKHLTTTAKKPHPFEYIHDELGYNYRLPNLNAALGCAQLEQLETFIEAKRALAAAYEGFFAGTGLEFVTEPSDCRSNYWLNAVICEDKLHRDELLETTNQQGVMTRPIWALMNHLTMYKGCCRGHLPNAEWLEARVVNLPSSVVS
>NZ_CP014754.1|WP_058089992.1|933839_934475_-|hypothetical-protein
MNRIGIFGTSGMAREAGDIAWAMGLEPIYVARDEAELRAWCSSAKVILEQDVDQYAGMPFVIGIGENNIRRAVAERFKDSLTFTNLIHPSATFGCSQREVLEHCKGTIVAAGARFTSGIIVGDFCIFNQNTTIAHDCRVESYVHVAPGANLSGNVHLKQGCWVGAGAVINQGSNTEKRVVGENTTVGSGAVVINDCEAHAVYAGVPAKRIK
>NZ_CP014754.1|WP_058089954.1|932838_933843_-|N-acetylneuraminate-synthase
MNTLIIAEAGVNHNGDMALAKELIAAAAAAGADLVKFQTFIAANIISRNAPKAEYQKGTTDPQESQQEMVRKLELTRENHLELIAECEKQGIGFFSTAFDKDSIDLLEELGGADVVKVPSGELTNLPYLRYLTRHGKHVLLSTGMANLGEIEAAINVVEQVGTPRDKITVLHCTTEYPTPMEDVNLRAMINIGKAFGVSVGYSDHTPGIEVPIAAVALGATVIEKHFTLDRSLPGPDHRASLEPDELKAMVQGIRNIEKALGDGIKRPSPSELKNKPIARKSLVAARPIKAGEAFTEDNLIAKRPGTGISPMQWDDVIGRTAPRDFSEDELIEL
>NZ_CP014754.1|WP_058089955.1|931666_932842_-|UDP-N-acetylglucosamine-2-epimerase-(hydrolyzing)
MTRKICVVTGTRAEFGLLRWLMGEIQSHPQLELQVIATGMHLSPEFGSTYREIEEAGFAIDARVEMLLSSDTNTAVTKSMGLGVIGFADAYERLAPDIVVVLGDRFEIFAATSAAMISGLPVAHLHGGETTEGAFDEAIRHSITKMSHLHFVGAEEYRQRVIQLGEHPDRVFNFGGMGIDAIIRIKLLSRDELERSLELSLGEKSLLVTFHPVTLEGGASSAAQMGELLAALDGLDDTTLIFTMPNADTGGRELSAMVREFAQGHPNAKVYTSLGQLRYFSCLAQIDGVVGNSSSGLAEAPSFKIGTVNIGDRQKGRLKATSVIDCEPNREAIQAALKTLYSAEFQASLAAVSNPYGNGGASEAIVKVLAEYPLENIRKKQFYNLSANDFS
>NZ_CP014754.1|WP_058089956.1|930595_931651_-|CBS-domain-containing-protein
MKPWRKALVNSDATLEQAIEVLDKAALRIALVVDASDTLLGTLTDGDVRRALLKHLPLETPVNQVMNAQPKTADQSWTESRILAVMEQHELLQLPLVDAEKRVVGLANLHDILNKHRHDNPVFLMAGGFGTRLRPLTNNCPKPMLKVGDKPILEQILLNFVEAGFHRFYISTHYMPEVIRDYFGNGEKWGISIQYVHEEEPLGTGGALGLLPHDEIDQPLFMMNGDLLTSLNLHSFLEFHQTHNGVATMCVREYEHQVPYGVITSEGTQIKSMVEKPVHRFFVNAGIYLLDPALVKSVEPGTRIDMPTLLEQQIDGGNAVNMFPIHEYWLDIGRMDDFHKAQAEVKGLLND
>NZ_CP014754.1|WP_058089957.1|929892_930603_-|acylneuraminate-cytidylyltransferase-family-protein
MTEPSERLIVIPARGGSKRLPRKNVLPLAGKPLICWTIEAALETGLTARIMVTSDDEEILSIARRYADRGLIAHKRPAELATDHATTADVLKEALDADQQAGYSAKTLILLQPTSPLRSAEDIRAAVETYEHSGSGDTVVSVCEVDHPTAWIGTISDSGHLKGVDLTGKRSQDYRKEYRLNGAVYVTAEKTLRETGRLFTDSVRAWVMPKARSIDIDEAVDFRICEHLIKTMAIKA
>NZ_CP014754.1|WP_058089958.1|928657_929896_-|oligosaccharide-flippase-family-protein
MRLRLINVSLRGLTLAIKFFLIICLAVYLPPEEVGLYGLIAVTVSYSIYFVGFEFYAYSTRDLVGKPKSDWPRLISSQVLFFGIMYLLVLPILSLLFLFGHLPLELLAGFLVLIVLEHLSSELMRLLVASENPMLATIVIFIKQALWAVFYILAMWMFPAARNIETLLIFWVFGAALGIVFGVAPLLKLDWKNSVLSPDWKWIRRGILIAIPLLVSSISARAIFTFDRYAFEALNGLALLGAYSVYMSIAAAMLSFMESGVFVFYYPRMMKAYKRGDFSEFKSVYKNMEKQAFLWMFVMIVSISLSVPIVFSMITERIYYDNIILFYGMLFSVSVFLAGYIYQYALYATLQDRIIIVANVVGLAVASVTVFVLARYNPYWAVTSAMIVGCAVSGSIKYSKWKKSRLDVGLNF
>NZ_CP014754.1|WP_058089949.1|938909_941465_-|sugar-transporter
MNLKTLFLPLALLFPLATQAQSISQAQLDQFKQLPRAQQEALASQYGIDLNNITGSQRTTQRPEQVNVVEPVTTITDEERDRAREQSEQEDKQTTKNGGLKPYGYELFAGSPTTFAPVTEIPVPSDYTLGPGDVLRIQMWGNQNQNLELPISRDGTISFPDSGPVTVAGLSFDEARQQIRKRVSEQYIGVEASITLGELRSMRVFVLGEARNPGSYTVSSLSTITNALYVSGGVKQNGSLRNVQHKRNGKLVGTLDLYDLLLKGDSSADNRLQPGDVIFIPPVGKRAGIEGEVYRPALYELKGDNTLADLVRMAGGLTPQAYPQRINIERTNQDFLRIIAEADYTAQQGQNARVQAGDRVRIPSISDITGQYVEVKGAATRAGKFAWMPGMRVSSIIRNLDADLLPVADKQYAAVVRTNPKDDTISVLNLRLREAVRSPGGEHDLVLEERDRLFLFSDAGKVDLQQKPENERENGALATAEKGVSEQGPETFTRERLFAPVIQRLKAQARPGSPEQTVRISGPVRYPGEYPMPATRSLADAVFVAGGLKDSASLYQAEVARYTTDDDGIGQTNILNVNLADAMAGNADLSLQSRDTILIKSIPDFAKTRTITLAGEVRYPGEYTFRDGETLKDVLQRAGGVTSNAFPRGAVFTREKLRQLEAQRLREAEERLQGDLLGVQLQGDSFGGQNAERVQQVQDLLEEVQNSRPIGRMVIDLAAVLENENYQAIRLQDGDQLTIPTIPQSVSVFGEVQFPTSHLHQTGLTVDDYLERSGGPTRQADESRVYVVKADGSVTLPQRSRWFGGRSQQLEPGDTIIMPIDVDRLNQLELWTNVSQIVYQMALGAAAVGNL
>NZ_CP014754.1|WP_058089948.1|941625_941991_-|GxxExxY-protein
MLLEEELTYRIQGCVFEVNKHLGHGFLESVYHNAMLHELRSAGLAVETEKPVSVLYKGESVGEHRLDLVVESKVILELKAQSRLNLGAEAQLLNYMKASRIPLGMLINFTAPRATIKRLVL
>NZ_CP014754.1|WP_058089947.1|942161_943643_-|capsule-assembly-Wzi-family-protein
MTSKHWALVGGAVACLSSFSIAAAPWLEPGDPRARFAVQKLADRGHLDRSVTTWPISWAALENGTQTSTSADLSSVGMASAYLRFEQEQQAQPGFRAEFNVNAQSDIPAFTGFQNNALAKAGTSFNLQWQGNAWAAGLKPAYAHDPDDDEEFRLDGSYLAATASNWVFGAGAIDRWWGPGWQSSLILSNNARPVPSVWVTRNDPAAFETPWLSWLGPWNATLLTGQFEKDRAVPEAKLIGMRFSFRPVNGLDIGLSRAIIFGGEGRPEGASTIWNALIGRDNGQLEEDDPGDQLGSIDIRYGFSIGQQSMGLYMEMMGEDEAGAFPGKKSWLMGADWTSQLFNADQQWFLEYVNTLADDFMGSAVPNVAFEHSRYRTGYRHYGRNMATSFEGDAVAVTLGAYHFLPSGSNITAKASYAELNKDGSTRVVAPNDKVFYTAPANSQDIAIIQLGYGTQVLNGWLDLNLQATDKKVEYISGKKDQFAASASWTYRF
>NZ_CP014754.1|WP_058089991.1|944055_944520_-|hypothetical-protein
MRMGNQFAVCKSELSLEEKGKKVTLTPRRGEEAKAIVLDGCVLTDNNMKCDALYLFSGSGKKVAALVELKGAGDIRHAFEQLAYTRKRRPEYQLLKAALEKSAPGRLLEKAFIVTNGMLPKPEIEKLENAHGIRVSAVLQSEPSNKIPDLRDWF
>NZ_CP014754.1|WP_058089946.1|944548_945769_-|AAA-family-ATPase
MKLKHLTLENFRACDHLDLEIGSRLTVLLGNNGSGKTSVLDGIAIGLGAVLTHLPSVSGITFKENGDIRQFNNVAAPYVRVALTTAEGLTWDRIKRRDKSKATAKATPSPLGLKSLEAYLDEAVIDKMNAGEQYQLPMMAYYGVSRAVLQVPLRRKGFPKSHTRLEALKQALEAQSSFKSAFIWFYNKENEENRLQREKRSFDVTLKELDAVRTAIGSVFPDISHPHIQVNPLRLAVTINGETLDLMQLSDGYKTLLGLVIDLSMRMGLANPHLDNPLTAEAIVMIDEVDLHLHPSWQQRVLADLLRTFPNTQFIMTTHSPFVVETLNNHLKRHKLGPDSTGDKDIDGLLPLSLSDVRAYRMENSEKYPLIDDETGLVDNTLLPHFNQINRLYDRMRDLEWNQKDD
>NZ_CP014754.1|WP_058089945.1|946246_947134_+|EAL-domain-containing-protein
MPECAVSELGKIDSATRIRDVIRSVGFDLVFQPKVAFSHGKLGGIEVLVRWPEVVSGRQAPDQFVPLAEQHGLAPMLDLHVLERTLRTWRSWSALTRLCWSPFPISVNVSAMSVQDEDFLRSVTWLLAESPRPKLMFELTETAPFHNPLAAAQTLEALSGHGIQVSLDDFCTGFNNHERLDTLPVAELKIDREDTAKLDTVAGIRHVGQMIEQAKAAGLTVTAEGIECRDQWKTLRTLGCDYGQGYWLCPPLSASDAVEFVQGYTPSRLLTATNEEHSAFEAVDLAPGLVHNLPK
>NZ_CP014754.1|WP_058089990.1|947272_948310_+|hypothetical-protein
MGAFSAGKTVLLAGAALTLAGCSANPVYTTTGIVLSNYAEGEATPYVLEMKDPEMACALGLSLDPLVYSFSRVTSPPDTTGSLLMLLAANCSEYNAMEAEITYLRANHEGNVNEARDARERVKRLNAEIAHRRLLAFERAMAAYKFDPGAEPLECPFLFDDQDELTFLMGLVTGLQAIVNDANSGAMAGIPRNIAPQAERAVRCVENDKWGGVPNAVRALVWLLLPDTRPPMSPDPWQVLEHSRELGFDRGFRVASALEVVAAETFGRPDVLEEAIRAAADAESDMEVSSAYQLLDSVAHRVLLHSSDKHWAANYGYRTPSNSFGSLSPVSSNRSTQTMDLDDLL
>NZ_CP014754.1|WP_058089944.1|948359_949367_+|hypothetical-protein
MRKFIGALALTCAAPLASANTMSVCVFDVIGANGDVFNVMKDYALEMRSLGVNLQLKPYTDEGVAVGDFNAGQCDAVAATDLRTRPFNKFTGSISAVGALPTYDNLETLLATLAQPRAADLMKSDGYEVLGIFPVGAGYLFVNDRSINTAGALAGKRMATLDYQKDAIHMVNYVKATVVPSDITNFAGKFNNGSVDTAYAPAFAYEALELYKGIEPDGGVVDYPLAQLTVQLIAREGVVDGDTAQKAREAAWDMYPQVMNLIKSQEAAIPDEKWIKIPDQDIVGYQEMFRENRLEMRDGVNRAPSVYDPRMLKLMANIRCSSNPGAAECTADNRE
>NZ_CP014754.1|WP_058089943.1|949434_949719_-|hypothetical-protein
MRQEYQNAYLNAVRAMAESGMTVQLLSGRELRARSGEAEAQTSERYMTQEFSRQVAAVCHGSLALSDISAEQLIKRDQGETKTATTSQRAKTTS
>NZ_CP014754.1|WP_058089942.1|949810_950209_-|hypothetical-protein
MAIVLDGTVAIQRDQSGDVANVIWFLYGLPASGGAPNNAVFLNESFGKASPQMVSFELDGEEYVVYADWQSSSDVHQGHEIKAFYKTYGYILISCLRDDVASDQGLIRREWITPVKYYEDYVTMVSELAKVG

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Crispr_ID: NZ_CP014754_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014754_3

988152-988303

Orphan

Consensus_repeat	Method
TGGGTCAGTCCCCGTTCGGGGAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP014754_3

>merge|NZ_CP014754|3|988152-988303|CRISPRCasFinder
GGGGTCTGTCCCCGAACGGGGACTGACCCACTTTTGCCCGTCTGTTGCACTAAGCCAGAGCCAATGGGTTCCAAAATGGGTCAGTCCCCGTTCGGGGACTGCCCCCTGGGAGACGGGCCGCGGTAAAAGTGGGTCAGTCCCGGTTCGGGGAC

>NZ_CP014754|3|3|988152-988303|CRISPRCasFinder
GGGGTCTGTCCCCGAACGGGGAC	TGACCCACTTTTGCCCGTCTGTTGCACTAAGCCAGAGCCAATGGGTTCCAAAA
TGGGTCAGTCCCCGTTCGGGGAC	TGCCCCCTGGGAGACGGGCCGCGGTAAAAG
TGGGTCAGTCCCGGTTCGGGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014754.1\|WP_058089913.1\|991478_992249_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349982
NZ_CP014754.1\|WP_058089916.1\|986719_988081_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP014754.1\|WP_058089987.1\|989844_991482_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225307
NZ_CP014754.1\|WP_058089924.1\|970564_973537_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163518
NZ_CP014754.1\|WP_058089919.1\|984523_985003_-\|transcription/translation-regulatory-transformer-protein-RfaH	unknown	unknown	gnl\|CDD\|193581
NZ_CP014754.1\|WP_156509975.1\|993989_995732_-\|type-VI-secretion-system-PAAR-protein	unknown	unknown	gnl\|CDD\|380263
NZ_CP014754.1\|WP_058089918.1\|985075_985843_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|238816
NZ_CP014754.1\|WP_058089921.1\|979709_982835_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274612
NZ_CP014754.1\|WP_058089915.1\|988310_988949_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418
NZ_CP014754.1\|WP_058089910.1\|993409_994000_-\|DUF2931-family-protein	unknown	unknown	gnl\|CDD\|371398
NZ_CP014754.1\|WP_058089908.1\|997037_997424_+\|glutaredoxin	unknown	unknown	gnl\|CDD\|239339
NZ_CP014754.1\|WP_058089923.1\|976311_977676_-\|DUF1329-domain-containing-protein	unknown	unknown	gnl\|CDD\|377764
NZ_CP014754.1\|WP_058089988.1\|973621_976096_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238626
NZ_CP014754.1\|WP_058089920.1\|983068_984340_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP014754.1\|WP_058089912.1\|992245_992596_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_058089909.1\|996127_996958_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_058089922.1\|977702_979610_-\|DUF1302-domain-containing-protein	unknown	unknown	gnl\|CDD\|377751
NZ_CP014754.1\|WP_058089917.1\|986041_986659_+\|transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP014754.1\|WP_058089911.1\|992762_993377_-\|DUF2931-family-protein	unknown	unknown	gnl\|CDD\|371398
NZ_CP014754.1\|WP_058089914.1\|989047_989674_-\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	unknown	unknown	gnl\|CDD\|183025

Protein	Function_ID	Function_description	E-value
NZ_CP014754.1\|WP_058089913.1\|991478_992249_+\|RNA-methyltransferase	gnl\|CDD\|349982	cd18109, SpoU-like_RNA-MTase, SAM-dependent RNA methylase related to SpoU-TrmH. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.23773e-50
NZ_CP014754.1\|WP_058089916.1\|986719_988081_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	4.11839e-113
NZ_CP014754.1\|WP_058089987.1\|989844_991482_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|225307	COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases [General function prediction only].	0
NZ_CP014754.1\|WP_058089924.1\|970564_973537_-\|hypothetical-protein	gnl\|CDD\|163518	TIGR03806, chp_HNE_0200, conserved hypothetical protein, HNE_0200 family. The model TIGR03805 describes an uncharacterized protein family that contains repeats associated with the formation of a right-handed helical stack of parallel beta strands, homologous to those found in a number of carbohydrate-binding proteins and sugar hydrolases. This model describes another uncharacterized protein family, found in the same species as TIGR03805 member proteins, usually as the adjacent gene or in a fusion protein. An example is HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes two members of this family are with a single member of TIGR03805. The function is unknown. [Hypothetical proteins, Conserved].	2.56884e-89
NZ_CP014754.1\|WP_058089919.1\|984523_985003_-\|transcription/translation-regulatory-transformer-protein-RfaH	gnl\|CDD\|193581	cd09892, NGN_SP_RfaH, N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP), RfaH. RfaH is an operon-specific virulence regulator, thought to have arisen from an early duplication of N-Utilization Substance G (NusG). Paralogs of eubacterial NusG, NusG SP (Specialized Paralog of NusG), are more diverse and often found as the first ORF in operons encoding secreted proteins and LPS biosynthesis genes. NusG SP family members are operon-specific transcriptional antitermination factors. NusG is essential in Escherichia coli and is associated with RNA polymerase elongation and Rho-termination in bacteria. In contrast, RfaH is a non-essential protein that controls expression of operons containing an ops (operon polarity suppressor) element in their transcribed DNA. RfaH and NusG are different in their response to Rho-dependent terminators and regulatory targets. The NusG N-terminal (NGN) domain is quite similar in all NusG orthologs, but its C-terminal domains and the linker that separate these two domains are different. The domain organization of NusG and its homologs suggest that the common properties of NusG and RfaH are due to their similar NGN domains.	4.19485e-47
NZ_CP014754.1\|WP_156509975.1\|993989_995732_-\|type-VI-secretion-system-PAAR-protein	gnl\|CDD\|380263	NF033420, T6SS_PAAR_dom, type VI secretion system PAAR protein. The PAAR domain is widespread, but this model represents a narrow clade that may occur in type VI secretion systems (T6SS), either free-standing or fused to a long extension. Effector domains of T6SS may be separate proteins, or may be fused to on of the tube or spike proteins: VgrG (spike), Hcp (tube), or this PAAR family (spike tip). Members of this family that have long extensions are likely to be T6SS effectors.	1.96498e-47
NZ_CP014754.1\|WP_058089918.1\|985075_985843_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|238816	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).	3.27576e-111
NZ_CP014754.1\|WP_058089921.1\|979709_982835_-\|hypothetical-protein	gnl\|CDD\|274612	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae.	6.79352e-17
NZ_CP014754.1\|WP_058089915.1\|988310_988949_-\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	7.82301e-15
NZ_CP014754.1\|WP_058089910.1\|993409_994000_-\|DUF2931-family-protein	gnl\|CDD\|371398	pfam11153, DUF2931, Protein of unknown function (DUF2931). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.	1.1315e-07
NZ_CP014754.1\|WP_058089908.1\|997037_997424_+\|glutaredoxin	gnl\|CDD\|239339	cd03041, GST_N_2GST_N, GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.	9.51486e-10
NZ_CP014754.1\|WP_058089923.1\|976311_977676_-\|DUF1329-domain-containing-protein	gnl\|CDD\|377764	pfam07044, DUF1329, Protein of unknown function (DUF1329). This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica.	0
NZ_CP014754.1\|WP_058089988.1\|973621_976096_-\|hypothetical-protein	gnl\|CDD\|238626	cd01301, rDP_like, renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.	4.07533e-06
NZ_CP014754.1\|WP_058089920.1\|983068_984340_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.43586e-63
NZ_CP014754.1\|WP_058089922.1\|977702_979610_-\|DUF1302-domain-containing-protein	gnl\|CDD\|377751	pfam06980, DUF1302, Protein of unknown function (DUF1302). This family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas.	0
NZ_CP014754.1\|WP_058089917.1\|986041_986659_+\|transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	3.24063e-16
NZ_CP014754.1\|WP_058089911.1\|992762_993377_-\|DUF2931-family-protein	gnl\|CDD\|371398	pfam11153, DUF2931, Protein of unknown function (DUF2931). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.	8.55497e-06
NZ_CP014754.1\|WP_058089914.1\|989047_989674_-\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	gnl\|CDD\|183025	PRK11188, rrmJ, 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE.	6.24703e-107

>NZ_CP014754.1|WP_058089916.1|986719_988081_-|MBL-fold-metallo-hydrolase
MKLRFLGGTGTVTGSRYLLSDENHRLLVDCGMYQGVKTLRRRNWATFPVDPSTIDAVVLTHAHIDHSGYLPALVKNGFKGRIYCTKATHELCKVLLPDAGFLQEEDAKYAFRKKFSKHEKPEPLFTEKDAREALKHFESLHYHEKFEPVKGFEVSFTPAGHILGSSCVHVHHKGAARTVVFSGDVGRQNDLIMRPPEPLQHADVLVCESTYGDRTHGESDPEGDLAEIITKTSGRGGIVLMPAFAVGRAQMLLYVIHKLMGQGKIPKLPVYLNSPMAIKATEIFCQHHKEHKLNRAQCELMDEKTEFVRTVEESIELDAVRYPCVIVSASGMASGGRVLHHLKTLLPNPRNSVVFAGFQAPGTRGDALVSGAESVKIHGEYWPVKAEIHNLDSMSAHGDYNEILAWLEQGTLKPEKVYVTHGEPVASDTMRKRITEKFGWPAEVPELFEEVEI
>NZ_CP014754.1|WP_058089917.1|986041_986659_+|transposase
MPQHVIQRGNNRQECFQDLADHATYATYLSRYQREFQVDIHAWVLMSNHTHLLVTPNAEGALSSLMKAVGQRYAQYYNHKYDRTGTLWEGRFKSCLVDTDQYFLQCQRYIELNPVKAGMVEYAGDYQWSSYNCHAYGMRSGMHTPHDCYLNFQPDAERRFVSYRAFIASPAPEGMDEQIHYAAISGKPLGSEEFRERIKAKFGEF
>NZ_CP014754.1|WP_058089918.1|985075_985843_-|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MYYSSILPEVIRIADEASEKALHIYQSDFKVNYKEDQSPITAADTASHDIIMKGLRNLTRDIPILSEEGAEIPWEERKHWRRFWLIDPIDGTKDFTQRTGEFTVNIAMIEDGEPVMGVVTAPALKEAFWGIKGEGASMRDRTGRIHRIRVVEPRETLRVVASKNHLNDETRAFIDTLGPHETVQAGSSLKFCRIAEGHADIYPRMGPTSEWDTAAAHAILLAAGGNVQTPQGEPLKYGKEDVLNPHFIAAGSWYF
>NZ_CP014754.1|WP_058089919.1|984523_985003_-|transcription/translation-regulatory-transformer-protein-RfaH
MTWYALQHKPAQGDRALQHLQNQEVSCFYPKIEVEKIRAGKRTRKLEPLFPGYLFVNLEQTDPMWSKLRSTRGVARIVGFANKPAAIADEVIEHIKISLDKVAEQGGIKPGQPVELDEGPFKGISAIFQAYDGEERAIVLITFMQKQQQVKVPVSVIRR
>NZ_CP014754.1|WP_058089920.1|983068_984340_-|GGDEF-domain-containing-protein
MAEYLDQPFAMLIGLSVLVLAAALLASVVRLKADIRSLRTTSTQQLKRLNARVAQLSNEHSEVASSLDDLRSSASIACDPDSSLAVTPAEQENRIIKSILNEGDLSKGLEKAFELLHPSPESTLWMAFGISVLDQNTKTLKLAWHQGIKEAVARQFSEARLVHGSAPHATSALLGEQVVVRRESTAQKHRDQPPAARLPEAVQTWHSFPIKKIDGSVLGTFDILSFNDGFPLPDSNRIANYLFVTSIILERHSYLNGILSQARTDKLTGLTNRGFAEESLVKEIERSQRYRNPLSVVLFDIDHFKSFNDTYGHDVGDVVLQEVARLSAGAIRATDVLGRWGGEEFLVILSETTLDNAMVVAENVRKAVETAHFEVCRSVTISLGVAEFTPRDTAQSLVKRADEALYKAKQAGRNRVLAQSKVA
>NZ_CP014754.1|WP_058089921.1|979709_982835_-|hypothetical-protein
MARFKHRALITALAASTALTGCLESGGKTNTNANPTYNISNPNSIADGTRPIFRPLETAFPLPSDPLFFLNPELDGTMLNGSDPANPVTTGLGFVDGNSILAPFDIKISDSLDPNQILDARNFVEIDGEVVPNPNQNIYVLEIEFPSGDSVFQQSREVGGIVAADRYRLAKRLEAEGNTEAADEIYQSLLEERFRVEIITVDANGPAGAAGGSQNNAIRLLPIKPLKPKTKYAVVLGNKIVDKDGDPLVRESRFETASNPEFVLSNPALQPFRDSMLPARAWGSDFFNFKRELGGGGAEASTFSDVTFAISFTTTAVEDVLLANAAPAAWLRQNLMTERKKSVLSQVFAGGFNFSGQELAGADEQHQQINQRMFSLLTDTSFRLYDEELAEILTIANENGIQLRYTDLVADEAADRQLAFTLQAAATQAVEEVVDFSQRAAELAEQIAAITPIPRAPGAEEPSPVRFFSQKDGGEVNPALEQTAADLFLTEINVNLQVYEGEITLPYYQQLPDGADGSPLQTGSWLPADFTDNPELPQAKSNRVSYRFPFAQKQADTKIPIIVGTPDPAFGAGPAAGYPVIIYQHAATQDRSAILPMATAAGLLCLADSGGAPSNSGDCFVTVGIDMPLNGVFGEAATSARDEDNPEQTPGMVEIGMQPNASPDATERHFGFTANEAMQAVPADQVTDPESGSLFLNFTNYANTRDNMRQGALDLLHINALLPAIESAIDACATAGDCSNGVNINTDRVYFISHSLSGMGGVPYPVINNLAARDNPDLNPILASVFFNTGGQFTRIAENSRNTIAPVLLPGLDAASDGLLAQGRTELNIYFNVFQALLDSTDPTAFAPLFESSGNSATLVTSIVGIDGDADRPSDGTIPNAADAELYDLGPLELVTDAGFQINSLPAPLAGTDPMARFMGAVSIDSASDDGTRPIITRYLEGSHGNPISAGQKGADPFSSSAVFDEMAAQLVALFRSKTTAEASFTVNVTNDCVVQDVGNAPGDPECDGQTDGGAEPDESEDVGEEGGGLLDGGLGGLFGG
>NZ_CP014754.1|WP_058089922.1|977702_979610_-|DUF1302-domain-containing-protein
MTTRKQCSRFKKRNSGLAAAIAAMLASPASAFDFNLYGIDATFSTTLTAGIGIRLEDQDPDLISQGNLGPEFAFSNTGASSNNFDDGNLNFKKGDPYSQILRGRSELFLDYRPNSDYLTRVGALVRGSYYYDYELKDNKRAVDPVGQRRELNPEAKDNAAGVDLLDAYIFTDWYAGNVPVSARVGRQVVSWGESTFILGGINATNPIDVPAFRSPGAELKDVLLPVNMIYTSVGITPDINIEAYLQLEWEPFKIDDCGTFFSSADVAADGCGPVLLAGQVPDAQALEEGFVSPREGDVEPGDRDQFGVAVRWFVPALDSELGFYYIRYHSRLPYISGIVNNPESPEAGQINDPDLPFSRFPSYYIDYPKGIDLFGVSINTTLPTGTSLGAEYSFRPNMPIQWNTFELIYGGVQQRGPDGQVISKLEQRVQASDPGFNYAGKPVDGFDRYDVSQAQATFIHFVDRVLGAGRFITVAEIGATYVHDLPDKSEARYGRSGIFGVGPVPLDGESFTGDFCSQGPGDETTRLNINPTNCGGDGFTTSFSWGYRALFALDYSNAFAGINLLPKLVLSHDVKGYAPDPGGNFKEGNKSVSIGVDANYQNRYSGSISYTNFFGGKYNEISDRDFIAASISYSF
>NZ_CP014754.1|WP_058089923.1|976311_977676_-|DUF1329-domain-containing-protein
MKTQKRHLIAGAIALSLFGASSAMAAVSESEAAKLGNELTPIGAEKAGNGGAIPAWDGGLTDPGVNQPQEGIYPDPFPNDEVKFVIDQSNVDQYADNLSPGQVAMIKTYSTFSIPVYETRRTSTYPAELMDLAKENATTVSLTPDGNGLQNYERGVPFPIPQKGQEVIFNHITRYRGGSIIRNVAQVTPQANGDFSPVKFTEHLTDRVELADYKPGMDDNVLFYFKQVITAPTRLAGNVLLVHETLDQVKEGRRAWLYNSGQRRVRRAPQVAYDGPGTAADGQRTSDNLDLFNGAPDRYNWELVGKKEMYIPYNSYRLASRDLSYNDIIQPGHINPSVTRYELHRVWHVRATLKEGERHIYAKRDFYVDEDSWQIAVVDHYDGRGDLWRVAESHHVQGYDINVPAYAAETLYDLMSGRYLVMGLTNEESDPYTYGVTARSNDYTPAALRRAGVR
>NZ_CP014754.1|WP_058089988.1|973621_976096_-|hypothetical-protein
MSARQRLLVSAVCASSILLLSACGGGEESSSDIAQNSEQRPSPGNPVPPSPPGKTSKPYAYENTRFAFANGCYSLQADGRFISESSGETYGVTNNASQAARFYLRPTELGAYLLMSDYQRETGQAGQFELLGISDPGGEFLDTTGMFIGELSYLVAGLGDTTNLLLDPIAPLGGLQRELGESLEFAGDQLANTDVRPALATVDSPNDLAVWKVNKLQDSEYTLTSAITGLMLGASEDGLTLASPSLRDTSNAFTFEPAQGCADYPEADLSLEVADDRGPAVYLKEVDRFKNIKGIDNDDIFGYVDTHSHISAYEFIGGRVNYGAPFHKFGVTHALENCEVAHGPWGTTGFVELVTSGSGPHDTQGWPTFNDWPRYNSLQHHQSYYRWLERAHYSGMKILVNHLVHNEVLCGINPQKQNDCDPMEAILLQIQRMYEMQNYIDAQHGGPGEGWFQIVTSPAQAREVIGEGKMAVVLGIEMSKVMRCGEFMGVPECSAQDIVERLDQLHQLGVRNMFPVHKFDNAFGGHLPDLSSGIGIGAVLYGGNLLETGHPIEFEECPEGTEYVGDETDQNADMQAFGILDQLLFQIDYLGDRFPETPEELKALDPRQGTGHLCNRRGLTDLGDFLIQELVRRKMMIETDHISRKAAARILDITQKLGYPVINSHGGWGGTEALRDRIAAQGGITASFGGVRENWVDKLVRDGNRPRPDDQKVGPFGGAGFASDVNGIAQLANNPGSAEDEARLYPFTSVDGRVIFHKQKTGDREFGLYDGRGVAHYGLYPDQIADMMLHSDRPQELIDDAVNQLFTSAEAYLRMWERIENAPL
>NZ_CP014754.1|WP_058089924.1|970564_973537_-|hypothetical-protein
MIQRLRTSGFAVLGISAVLLLSGCFGGSSGTDRADANRPGQEGEQPPRFSEGRVFRVEPGEQATEEMVAAMIQLRPGDSLEFGCGYFDLYHGLLIQATEDVEIRGCGKDDTVLNFRNSDNVTGLEALNVRGITVKDLTILDSPGDAFKLKGVKWGTLLNVRAIWSGGGEPITRDNVASRLHVECTSPPFNEGDPTPDYVPSASSGRYGIYPVESENILVDNSESIGASDAGIYVGQTNNAIIRNSRAAYNVMGFEIENVQGGEYDSNLAECNTGGFLIYDLENITQYGDTSVMLNNISRNNNTYNFAPSGIVSAVPRGTGFITLGYDNIEIYNNVFEDNSTAAIIYTSYELIDGKGKTSDKKLDPYTEGLHIHNNVMKNSGYDLPPPNLEKVLVDGEVETVLPTLIGIKNLNRPGKGAHIVWDGLLDDLNADCPYPVDANGQPVPKKANGKPIHTNEHPNPECLYNAYKFDNQGNRKLPEWGACIHSNEMSSDSLAYMNFHGTRGLELLFAAMDPNPSLLSWQSLSDILTGPTEFFADSDMSEHDCQARFGRTLASLPRVTIPPFERSGGIDPAPSEEFINQLCEAPVASGQINRDALAVDCPTLDQYNLFAGAQDPRSMPHEGGVPFVLNSKLFSDYATKYRVAFIPPGTKALYVDGQNGGNLNGTIHFPTGTVIAKTFAFTDESKGAEELVETRLLIKRTSQSGKAVWSGPTYSWSTDVNGQKVAKLVPGGETRSVSWHYQDQHTGKLLAGSTDSYAIPNQNQCITCHSNDDLEAGAAPIGPKPRNLNRAYRPESEFMGTAGQGGFPRVNQLQYWKDQGLLANAPALQIDGRGVATNIERLPHWNIPGDSGAASGSDEDVEARLRAYLEVNCQHCHNDKGAASNTGYYLDHYRKIDAGYGICKKPTATGGGSCGRQHVVVPGDPGRSIVSCRVEDASDPQRKMPPIAKSVSHTEAVELLNYWIGQVVDSGYDNAEACGGSGIFQSITP
>NZ_CP014754.1|WP_058089915.1|988310_988949_-|c-type-cytochrome
MQNRSIQFLLFIALLALTPLAGASSVYSALAQLEDIVADDERRQASYDAGEERIRFCGYCHGRDGNSKRDYIPNLAGQHPLYLFEQFEKFGSGAREDYVMSQLAKTLTVEERINIAVFYSEQKAQPRQGADPRLAEKGGQFYDQRCAACHGKTAEGFRDMPRLASQPAEYVTLALKRFQGMDPTKHTSPMIGISAVLSETDIQALAAYLQGL
>NZ_CP014754.1|WP_058089914.1|989047_989674_-|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE
MARSKSSNRWLEEHVNDPFVKQAQQDGYRSRASYKLLEINEKDRLIQPTNLVVDLGSAPGGWSQVAAKLVGHKGRVVASDILHMDPIAGVEFIQGDFTEQEVFDQIMAILDGARADVVISDMAPNISGVNAADQAASMYLVELALDMACQILKPKGSFVAKVFHGEGYDDYVKAMRDVFTKVVVRKPDSSRARSREVYLVGKGFKGAV
>NZ_CP014754.1|WP_058089987.1|989844_991482_+|NAD(P)/FAD-dependent-oxidoreductase
MIRVTELALPLDHPEAALKAALLHRLKLKNDELLEFTVFKRSYDARKKNTEIKFVYIIDLEVKDEAAVLARFADDTHVRPAPDTAYYPVAQAPAGLEQRPVVVGLGPCGLFAALLLAQMGFKPIVLERGKDVRRRTKDTWALWRKKQLSPESNVQFGEGGAGLFSDGKLYSQIKDPKFYGRKVMAEFVKAGAPEEILYVSKPHIGTFRLTGVVSKMREEIIRLGGEIRFEQKVTDLLVDNGQVKGVELASGEQLMSRHVVMALGHSARETFRMLHQRGVFLEAKPFAIGFRIEHPQGLIDQARLGKYAGHPALGAADYKLVYHASNGRAVYSFCMCPGGTVVAATSEPGRVVTNGMSQYSRNERNANSGIVVNIDPNKDFPGGPLAGVELQEQLEANAYKLGGSDYCAPGQLVGDFIAGKPSEKLGEVVPSYKPGIRLGDLAPSLPAYAIDAIREALPAFGRQIRGFDRADAVLTGIETRTSSPVRITRDRDTLQSLNTRGLYPAGEGAGYAGGILSAGVDGIKVAEAVAKAMMAELDTAGSNPS
>NZ_CP014754.1|WP_058089913.1|991478_992249_+|RNA-methyltransferase
MKLDDIKKLHQKKYRQAFGHFLVEGEHLVLELEKACGQAPSTWGQAQLYVTSAYEHWRSPWPKHLISDRQMALLADTKTPQGILAVVPMPPASTESTAPGEKAVYLHEVQDPGNLGTILRTLAWFGGMRCLLSPGSVDPFNPKVVRASMGAIFHVPIETEVSLDSLARRYPRIACLDIGGEAIATPAFADHDCYLFGNEARGVPQEALNELAAQRFTIPGAAKIESLNLASAVNMAVYELNRGTIANVASPFKANQ
>NZ_CP014754.1|WP_058089912.1|992245_992596_+|hypothetical-protein
MIRKYVIGTLSLGVFLAFILAMVLMVQLHRYGIAVDVARLENLQTWAGDDEQRQAQMQRYFEHCIDNHRDPEDKRSPEHIRSLYQCAEDHGSAEIAQVVRQAPNTVKAPAPLRWFW
>NZ_CP014754.1|WP_058089911.1|992762_993377_-|DUF2931-family-protein
MCKGPAVGAIFIILLPIFASACSSEPREYDFAVSVAGGPQGWPVWVEDISFDEIWSARGGSLRGGYDHIPPGGGVVGISPKPAPRTVQARWFSFRTQTFYEVTFSLPDDLDGNLRQWYRDYPLEDYSHTLIVGFSGKGEALAWWEAFCNTCNYDRSHDFHIPLAENVVAEVVEGNPAWYEDITYQHVREGSIPLPPGMADSSAK
>NZ_CP014754.1|WP_058089910.1|993409_994000_-|DUF2931-family-protein
MRNNITARVAFSFLLLVLVTACSSEPREYDFAVSVAGGPEGWPVWVDEVIVDQSWRVPAGGIEHGFDQLPPMGGVAILGPKPAPSTVHARWFSYRTQTFYEVTLSLPEDLDDQLRKWFRDYPRDEYIHTLIIGFSGKGEALAWWEAFCNACNYDRSHDFNTPLIEDVQAEVVEGDPSGYRLQTQELIDEGSMPSPW
>NZ_CP014754.1|WP_156509975.1|993989_995732_-|type-VI-secretion-system-PAAR-protein
MSGKKVVLLGDLGTDHEGFPPTPVINSSPDVFIDGKPVARVGDQLAPHSKPKHSPHPRTIASGSSTVFINGLPVATNGGAISCGGVTIGSSSVVVGDTHAPLPFSGVSGANSHSAPLSSESSTAETRSNGTQASSGAQLRNSTSSHDGGGAGSAATPSQASKDIDESGKTLRLGLFFDGTGNHRGHDQILANRDVTNVAKLYDLYRETTNIRRVYVRGPGTIDGKHTPDGFESQDDLMGLGLGIGPEGGHDRIGYALERMRRDIFSGDYDEVVFDVFGFSRGAALARHFVNLINEQPETVLLPQFKGASLFAPMLGVKSVSAFPPGVKARVNFVGLFDTVGSFYLPGDNANIDFNLNLSPSSAERVVHLTAHHEIRKNFPLSSILDADGNGPSHFKEIAVPGAHSDVGGGYENPDKGFENIEKIVLGIHSGLADGGHTQRTAIPQLEAKYARPGRAVVAVPQPNGDIHVQERRHTRKELAIYNLHRMYEFALQSDVPLRQMNTNNKDFQIPQDLQAALSSWHTSGGLLDASRDYLGGYIHTSDSIYRLGLEPDPSGNRTVFFNRPTKAITPLSKGVAHAQ
>NZ_CP014754.1|WP_058089909.1|996127_996958_+|hypothetical-protein
MVRLFLLALSMAASAGLSTPAAADETRDWTLTVETGPVWLSRNDVQIPNDSSGDRFDLLKLTGQGADPYFRVHLAYQLSDKHSVSLLYAPLRTYGHGTLPSDVRFAGETFEAGGSVKGVYKFNTYRLGWRYHWPEHGDWKLSAGATLLVRDANVRLSQGTTSADDPDLGVVPLLSFQARRAFAQRWALEFDVEGLGAPQGRAIDAAVAVTYQLSPQLEGRLGYRTLEGGADNDTVYTFAWAHYGLLGLGTASRRAAGHHDLGSDPRTFDGVKCLGV
>NZ_CP014754.1|WP_058089908.1|997037_997424_+|glutaredoxin
MRMIIRAFFRLLRLVLTPFMLLSEKLSTPKAISRSPEQQAEIDKATENLALYQFRACPFCIKVRKEMARLGLNIELRNAQHDPAHREDLLNGGGTVKVPCLLITDDQGEKQWMYESGDINAWLNRQFG

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Crispr_ID: NZ_CP014754_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014754_4

2566962-2567061

Orphan

Consensus_repeat	Method
GGACGTATTCACAGCGTGTTTTGGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014754_4

>merge|NZ_CP014754|4|2566962-2567061|CRISPRCasFinder
GGACGTATTCACAGCGTGTTTTGGAACGCTCAACCCCACGGTGTGCGGGCGGCAAACGAGAGCGGAGCGTACAAGGATGTATTCACAGCGTGTTTTGGAA

>NZ_CP014754|4|4|2566962-2567061|CRISPRCasFinder
GGACGTATTCACAGCGTGTTTTGGAA	CGCTCAACCCCACGGTGTGCGGGCGGCAAACGAGAGCGGAGCGTACAA
GGATGTATTCACAGCGTGTTTTGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014754.1\|WP_156510005.1\|2581338_2582496_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_058090740.1\|2563408_2564230_+\|DotU-family-type-IV/VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|225986
NZ_CP014754.1\|WP_058090738.1\|2567130_2568696_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226350
NZ_CP014754.1\|WP_058090741.1\|2562070_2563405_+\|type-VI-secretion-system-baseplate-subunit-TssK	unknown	unknown	gnl\|CDD\|226053
NZ_CP014754.1\|WP_058090729.1\|2583230_2583473_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_058090735.1\|2570811_2574405_+\|type-VI-secretion-system-membrane-subunit-TssM	unknown	unknown	gnl\|CDD\|274531
NZ_CP014754.1\|WP_058090733.1\|2576627_2577188_+\|DUF4123-domain-containing-protein	unknown	unknown	gnl\|CDD\|379225
NZ_CP014754.1\|WP_058090743.1\|2560206_2561541_+\|type-VI-secretion-system-associated-FHA-domain-protein-TagH	unknown	unknown	gnl\|CDD\|225987
NZ_CP014754.1\|WP_058090748.1\|2554621_2555119_+\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|377529
NZ_CP014754.1\|WP_058090737.1\|2568692_2569334_+\|type-VI-secretion-system-associated-protein-TagO	unknown	unknown	gnl\|CDD\|378637
NZ_CP014754.1\|WP_058090745.1\|2557436_2559209_+\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|274541
NZ_CP014754.1\|WP_068351499.1\|2574507_2576631_+\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|274542
NZ_CP014754.1\|WP_058090730.1\|2582562_2583108_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_058090732.1\|2577227_2581346_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP014754.1\|WP_058090744.1\|2559172_2560189_+\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|377755
NZ_CP014754.1\|WP_058090736.1\|2569344_2570787_+\|type-VI-secretion-system-protein-TssA	unknown	unknown	gnl\|CDD\|379913
NZ_CP014754.1\|WP_058090742.1\|2561537_2562071_+\|type-VI-secretion-system-lipoprotein-TssJ	unknown	unknown	gnl\|CDD\|378947
NZ_CP014754.1\|WP_082888481.1\|2564195_2566874_+\|type-VI-secretion-system-ATPase-TssH	unknown	unknown	gnl\|CDD\|274528
NZ_CP014754.1\|WP_058090746.1\|2556665_2557103_+\|type-VI-secretion-system-baseplate-subunit-TssE	unknown	unknown	gnl\|CDD\|274540
NZ_CP014754.1\|WP_058090747.1\|2555180_2556662_+\|type-VI-secretion-system-contractile-sheath-large-subunit	unknown	unknown	gnl\|CDD\|274538

Protein	Function_ID	Function_description	E-value
NZ_CP014754.1\|WP_058090740.1\|2563408_2564230_+\|DotU-family-type-IV/VI-secretion-system-protein	gnl\|CDD\|225986	COG3455, COG3455, Type VI protein secretion system component VasF [Intracellular trafficking, secretion, and vesicular transport].	2.93361e-77
NZ_CP014754.1\|WP_058090738.1\|2567130_2568696_+\|AAA-domain-containing-protein	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	7.39654e-126
NZ_CP014754.1\|WP_058090741.1\|2562070_2563405_+\|type-VI-secretion-system-baseplate-subunit-TssK	gnl\|CDD\|226053	COG3522, COG3522, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NZ_CP014754.1\|WP_058090735.1\|2570811_2574405_+\|type-VI-secretion-system-membrane-subunit-TssM	gnl\|CDD\|274531	TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. [Cellular processes, Pathogenesis].	0
NZ_CP014754.1\|WP_058090733.1\|2576627_2577188_+\|DUF4123-domain-containing-protein	gnl\|CDD\|379225	pfam13503, DUF4123, Domain of unknown function (DUF4123). This presumed domain is functionally uncharacterized. It is about 120 amino acids in length and contains several conserved motifs that may be functionally important. This domain is sometimes associated with the FHA domain.	9.90324e-19
NZ_CP014754.1\|WP_058090743.1\|2560206_2561541_+\|type-VI-secretion-system-associated-FHA-domain-protein-TagH	gnl\|CDD\|225987	COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms].	2.40569e-78
NZ_CP014754.1\|WP_058090748.1\|2554621_2555119_+\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|377529	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2. VipA is a family of Gram-negative bacterial proteins that form part of the type VI pathogenic secretion system. Members have been variously defined as VC_A0107 family, Hcp2 and VipA, for ClpV-interacting proteins. VipB and VipA proteins interact very closely to form the shaft of the pathogenic penetrating needle system.	3.89479e-70
NZ_CP014754.1\|WP_058090737.1\|2568692_2569334_+\|type-VI-secretion-system-associated-protein-TagO	gnl\|CDD\|378637	pfam11319, VasI, Type VI secretion system VasI, EvfG, VC_A0118. VasI is a family of Gram-negative proteins that form part of the pathogenicity apparatus for bacteria-to-bacteria attack. The exact function of this component is not known.	9.94124e-62
NZ_CP014754.1\|WP_058090745.1\|2557436_2559209_+\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|274541	TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family. This protein family is associated with type VI secretion in a number of pathogenic bacteria. Mutation is associated with impaired virulence, such as impaired infection of plants by Rhizobium leguminosarum.	0
NZ_CP014754.1\|WP_068351499.1\|2574507_2576631_+\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	0
NZ_CP014754.1\|WP_058090732.1\|2577227_2581346_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	4.19443e-07
NZ_CP014754.1\|WP_058090744.1\|2559172_2560189_+\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|377755	pfam06996, T6SS_TssG, Type VI secretion, TssG. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssG. TssG is homologs to phage tail proteins and is required for proper assembly of the Hcp tube in bacteria.One other member in this family, SciB (Q93IT4) from Salmonella enterica, is thought to be involved in virulence.	5.97165e-117
NZ_CP014754.1\|WP_058090736.1\|2569344_2570787_+\|type-VI-secretion-system-protein-TssA	gnl\|CDD\|379913	pfam16989, T6SS_VasJ, Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ. T6SS_VasJ is a family from Gram-negative bacteria that forms a component of the type VI pathogenic secretion system. In the case of the Escherichia coli RS218 strain UniProtKB:G8IRL4, EvfF,it represents expression of the full-length gene; whereas it is just the C-terminal part of EvfE, UniProtKB:G8IRL3. The N-terminal part of these sequences is in family ImpA_N, pfam06812.	3.82961e-92
NZ_CP014754.1\|WP_058090742.1\|2561537_2562071_+\|type-VI-secretion-system-lipoprotein-TssJ	gnl\|CDD\|378947	pfam12790, T6SS-SciN, Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113. One of the virulence mechanisms of E coli is the production of toxins which it produces from dedicated machineries called secretion systems. Seven secretion systems have been described, which assemble from 3 to up to more than 20 subunits. These secretion systems derive from or have co-evolved with bacterial organelles such as ABC transporters (type I), type IV pili (type 2), flagella (type 3), or conjugative machines (type IV). The type VI secretion system (T6SS) is present in most pathogens that have contact with animals, plants, or humans. SciN is a lipoprotein tethered to the outer membrane and expressed in the periplasm of E coli and is essential for T6S-dependent secretion of the Hcp-like SciD protein and for biofilm formation.	2.14618e-37
NZ_CP014754.1\|WP_082888481.1\|2564195_2566874_+\|type-VI-secretion-system-ATPase-TssH	gnl\|CDD\|274528	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP014754.1\|WP_058090746.1\|2556665_2557103_+\|type-VI-secretion-system-baseplate-subunit-TssE	gnl\|CDD\|274540	TIGR03357, hypothetical_protein_Atu4338, type VI secretion system lysozyme-like protein. The description for Pfam family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.	1.74868e-49
NZ_CP014754.1\|WP_058090747.1\|2555180_2556662_+\|type-VI-secretion-system-contractile-sheath-large-subunit	gnl\|CDD\|274538	TIGR03355, VI_chp_2, type VI secretion protein, EvpB/VC_A0108 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0

>NZ_CP014754.1|WP_082888481.1|2564195_2566874_+|type-VI-secretion-system-ATPase-TssH
MCSAYWTNYRNKDITVIRVELPALIGRLNDISRQALEASAALCISRQGAEITPAHLLFKLLETPFSDVRQILEHTGINHQQLQPLVGDSLNGEPQTAEPYPSFSPLLVELMQDAWLLASTELGHTELRSGAVFLALLMNADRYLMPRVAQTLVDINREQLRKQFDRLTDGSVERPQLTENGSAKPVADTDMDPLKRYATDFTKLAREEKLDPVVCRDAEIDQMIDILCRRRKNNPIVVGDAGVGKSALVEGLALRIVNGDVPDRLKTVELWTLDMGALQAGASVKGEFEKRLKGVIEAVKGSVTPIILFIDEAHTLIGAGNSEGGSDAANLLKPALARGELRTIAATTWREYKKYFEKDPALSRRFQPVALDEPTPGEAVHILRGLRTVYEKAHQVLVADSALKAASEMSARYLAGRQLPDKAIDVLDTACARVSLNLSTPPRRLSHVRSELHQLAMEQDLLSREHTLGQSVDAEREQELEQRIADLTAEAEALEQSWNDQRDLVARLVDIREQLLLGDVEAEIAAVELAESDHEERPDLKSEAAAIEQELAELQADEPLVHARVDARQVAEVIADWTGIPVNRMTTDELEKITHLPAYLQAHIKGQDTAIDCLHQHLLTARADLRRPGRPMGAFLLVGPSGVGKTETVVQLAELLYGGRQFLTTINMSEYQEKHTVSRLIGSPPGYVGFGEGGILTEAIRQKPYSVVLLDEVEKAHPEVLNLFYQAFDKGELADGEGRLIDCKNVVFFLTSNLGYQTIANHAEAPEKIEEALYPELANFFKPALLARMEVVPYLPLGEDTLNRIVGDKLQRLADQIKARYHTDVELEDGLVEAIRSRATRSENGARMLESIIEGELLPPVSLALLEKLAAREPVTKVTLGVEENKFTGTVA
>NZ_CP014754.1|WP_058090740.1|2563408_2564230_+|DotU-family-type-IV/VI-secretion-system-protein
MADAPVMDRPDNTRDSGDSAFSDLLFADAGNSGSRTEFDNAGFQLRGLEENRLIDAATPLLGLVIRVRRLADFRDVENLYQQVVDEVAAIDRELIEQGYERPTVVAYRYVLCAFIDEAVLGTDWGAHSVWSQHSLLSRFHNETWGGEKVFAILARMEKEPARYRDMLGFIYLCLCLGFEGRYKVMENGRDEYDRIVRGLYEQLRELRADRDPQPLADATENVAPARNRLRSGLPLWGIGGLFIAAMAGIYHLYNVALNERIRDVLSVLDQLPK
>NZ_CP014754.1|WP_058090741.1|2562070_2563405_+|type-VI-secretion-system-baseplate-subunit-TssK
MAATNRVVWSDGLFIKPQHFQQQQRYLEHQINERALAVSDYLYGFSDLELNAEYLSFGRVGLVRASGLFPDGTRFNLPQDDVMPEPLEITDASVANQVVYLALPLGSDTLAEVEWPDAPVAGRFRAQTVEIRDLHSIDGDAHSIDVGRVAPRLMLERDDRSAYASVAIGRILEKRPDGSLVMDPNFLPTMLSVRSAPRLQRFVGEMAGLMQERARNIAERVGAPGQGGVADVSDFMLLQMLNRAHPKFMHLARLRQLHPERLYEALLELCGELVTFTDESRLPKEFTPYDHDLPEACFSPLMQVLRQALSTVLEPRALSITLQQRQYGLTVAPVQDGQIIKDAEFILAVKADMPLDDLRKQFTQQCKVASVEKIRDLISLQLPGIPLSALPVAPRQLPYHAGFVYFRLDEQSQAWQMLDNASGFAFHVAGSFPGLEMQFWAIRS
>NZ_CP014754.1|WP_058090742.1|2561537_2562071_+|type-VI-secretion-system-lipoprotein-TssJ
MKYCKWSLLAIVMLMVGCSTPYNAVTKTAKVLWDPDIPVGYPEELPSKVALTMLAEPDVNPNESLAPTPIAYQIIELRDSSLLMAGDFDQLLNDLEKSLGRNYVDHSDYTLVPGQFKYVAPFEISKDTRFIGVIAFYAYPNLSQWKKVIRVDPVGDTYHLLVNLREREVQLRRSEDT
>NZ_CP014754.1|WP_058090743.1|2560206_2561541_+|type-VI-secretion-system-associated-FHA-domain-protein-TagH
MSNRTAALTLVIINPTETGGGASIEHSFGTGGGSIGTAANDTWRLSPHRTGAVAGHAEVRFLDGGFCLIDRSGRTYINSSSQPVGRGRRARLNHGDTLTIGRYRMRAELNGDAVDRSELEEGSGQDRQLVDVEEDSLLRAETGQRLPDGREPLVGLHTPAGEPVSDDPLAPWQETAGQPAEEAPELLASDQSWFARSAEVSDEYRENRDVAMGLPMNRNARKHGHDTQERQGMSEFREHSREAKDTSRQHISGAPLMRGMEADIDFADSDEMRLFLEEAGQTLKATVEGLLALHQGEDSRHRALRTRLQPIEDNPLRLGDDYTGTMQTLFAAERSPVHLSAPAAVRESLESLNHHQQATREAIREALEAILYAFSPEALLRRFHGYRRGLQDNEDEGRWAWNMYQHYYRELRSSRQQGFERLFQEVFDQAYDQHLRQLQRESLS
>NZ_CP014754.1|WP_058090744.1|2559172_2560189_+|type-VI-secretion-system-baseplate-subunit-TssG
MDVTARSAAADVAGLEPVLGNARRYSFFQLVDLIHRHHGDDLENSGSGEPRQERIRFSASAGLGFPGSDVVSALSPEHEHAPYQMEVSFLGLHGSQSPLPGYYLEDLAWEAGQNLGVRRHFLDFFNHRLVTLFHRAWRKYRYYVRFQPGASDGFSELVFSLVGLGDSRLREATPVNWSKMLAYAGQMAGRSRSPEVVSGIVAHCFDLEDVSIEQWVLRKVAIGQDQQTRLGRANASLGQDTLVGSSIRDRSGKFILRLRNLSRQRFADFLPNGRDHERLVKLVEFTTREQLAYDLELQMRPKDIRPMQLGEDVRLGWNSFVTPDRARERPAVRIQIRR
>NZ_CP014754.1|WP_058090745.1|2557436_2559209_+|type-VI-secretion-system-baseplate-subunit-TssF
MKLNRFYRDELSFLRLQGREFAEAHPQLTRFLSEQSTDPDVERLLEGFAFLTGKLREKVEDEFPELTHSLLNMLWPNYLRPVPSCTIMRFDPQLHAISERQTVERHTEIKSRPLGEASRQTQCRFRTCRAVDIFPVSVADAHAEHSREVSSVTVDLGLHTDQPLNALGLDNLRFYLGGDNHTAETLYLWLNHYLTRMELVVGDNVYNLPSSLLQPVGFAADEAILPYPKNAYAGYRIIQEYLSFPEAFRFIDIAGLKSRLPAVQADEISLRFHFSRILPPDVRVTRDSLQLYCTPAVNLFSHEGEPVDLNGRQTEYRISPSSRCPEHFEVFSIEQVEGWLEGRSGRGEPRLYTAFESFQHEVERDRGRTALYYRVRTRESVRGDGFDHYISFVRGDESECMNRQEAVSLTLTCTNRQLPQQLAVGEICMATETTPAFASFSNITRPTATLRPTLDGSLLWTLISNLSLNYLSMLDVDALRTVLRVYDFRALVDRQAERVSQKRLAGISEITTQPVDRMVRGLPVRGIRSVLKLDQQNFGSEGDLYLFGTVLSQFFALYASINAFHQLEVVNTDNQERYTWTLQQGQQPLM
>NZ_CP014754.1|WP_058090746.1|2556665_2557103_+|type-VI-secretion-system-baseplate-subunit-TssE
MFGATGTDGVRNTGSLFERLEQAAAPAGQSMGEVTHVVESIKRHLVRLLNAHPGNSASVPDLGLLDFNDATLGTQDLSIQIRGAIRQCIEKFEPRVKRVDVVALPPGPDPLQLKFQVTVYLQVAGADDRTTIDLVLDDKRYYRVL
>NZ_CP014754.1|WP_058090747.1|2555180_2556662_+|type-VI-secretion-system-contractile-sheath-large-subunit
MSDTAVQQSAASESVAEGSLLDQVMANSRMAPADEGYDVARKGVATFIANLLKSDEKGQPVNKALVDQMVVELDRKISAQMDEILHAPKLQELESSWRGLKLMVDRTEFRENIKVDILHATKQELLEDFEFAPDVTQTGFYKHIYAAEYGQFGGEPVGAIVGNYAFSPSTPDMKLLQYVSSVGAMSHAPFLSSVAPSFFGVDSYQELPAIKELSAVFEGPKYAKWRSLRESEDARYLGLTAPRFLLRVPYDPTENPVRSFNYKEEVSGDHEHYLWGNTAYLLATRLTESFAKYRWCPNIIGPQSGGAVEDLPVHTFESFGQLEAKIPTEVLITDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKPKQFPNTKEGKEAETNYKLGTQLPYMMIVNRLAHYIKVLQREQIGSWKERQDLERELNTWIRQYVADQENPPAEVRSRRPLRAAKVEVSEVEGDPGWYQVSLAVRPHFKYMGANFELSLVGRLDKD
>NZ_CP014754.1|WP_058090748.1|2554621_2555119_+|type-VI-secretion-system-contractile-sheath-small-subunit
MSAKDGSVAPKERINIKYVPATGDQQAETELPLKMFVVGDFKGHAEETPIEDRKAISVDKNNFRSVMKEAGLTLSTSVSNKLEENADDLPVNLEFQGLDDFSPDSIARQVPELKKLIELREALVALKGPLGNVPSFRSKLQELLDNDSAREKLLAELELATEGGE
>NZ_CP014754.1|WP_058090738.1|2567130_2568696_+|AAA-domain-containing-protein
MQKELHTGIDLAVALIKQDTLPALLNTATSQLQKAFGLTKCWALELDLSGRTLHCGQLGDTSEFDCSDFSHPFAHVLQTGQPRELTRAASYRLDHPGFQTLFDASDRPRSLWLEPLAGEDGRTLGILVLCSDHPDWQGIVGQPLYAGIKQLLVHQWISQLQTRDQVWQRRMLKRSLDHLHDAETLRQRCEKLAHTLVGNSEAMVNLRAQVVRAAGSQLSVLIQGETGCGKDVVARGIHDMSDRANGPLVVVNCAAIPDTLLESELFGHTKGAFSGADQSKEGLLAQANGGTLFLDEIGDMPMALQSKLLRVLESRQFRPLGARDEQHSDFRLVAATHQPLQEGIEDGRFRRDLFYRLSQFPLRVIPLRERTEDLEALSRHFIRLYTEREGSGPLGISSHALHTLAGYNFPGNVRELRNIVELACLQTPAGDDIQPEVLRLDDLFADPGPAMDASVEPKAMVGVPVADDIRDLKAAAQAFEAAIIRERLRQYGGNRAQAAESLGLPKRTLAHKCLKYQVTDV
>NZ_CP014754.1|WP_058090737.1|2568692_2569334_+|type-VI-secretion-system-associated-protein-TagO
MTLKDRIQPGLFGLAMLLASTVTLADTRLAEAEACTAEANRLDRLACFDEVFATPLARYEQGRRVPEVNQSERWRRAFAQASGEDASGVTYRDTGAAAGHLVTVSALGVQPPRPVLALQCHNNITELTVMLPEPINRERVEVALGPERAYWRVRDEGLVVSAGRGLPAIRIVQQIVGQPDARIHAEAQELDGLLFDLSGYAEAIRPLRQACGW
>NZ_CP014754.1|WP_058090736.1|2569344_2570787_+|type-VI-secretion-system-protein-TssA
MQVIEQHPYVEQVLGAIPGESGTGDSLAEDPVLEFLEDEVMKVGSLAHNDIDWNKVESEALKLLADRSKDIKVLGFLMLSLQRSGDGERFALSLYLLHRVLDGWWENAWPYPGAKGQRARKMLFTQMLQRALKGVESLSFDASVGDGRQYCLDLIDKLDDQAKAKDLPGDALFDLKRAAEKLPKPDQPGSQASAGEPQTAPSQPAAAAVNKPAATTAASASLGSLTLDPSNERATRQSLLKVAELLTGTEPENPLGYQMRRHAIWQSITSLPPTRDGKRTDLAAVSADRVAEYKESLDKTPDNELWQRIEQSLSVSPFWLDGHWLSARAAMALGHSDCAEAIREALKAFVQRLPELAELTFNDGTAFLSDDAADWMHTAPASAKGNGGGANPWEQALDSAVELARQSKLPAALELLEQGLADAREPRERLYWRLASAKLLKETGLKAMAAQQIQDLQGQVRGLVLEDWEPGLIKQLERLA
>NZ_CP014754.1|WP_058090735.1|2570811_2574405_+|type-VI-secretion-system-membrane-subunit-TssM
METMWRKALLIGRWLLPHLRNAAPVTLALAVIALLVATWWLGPRLEIGGEYPLMAWQMRALVTLGVILLVVVFWGMALARRLGKVNKAKAEEQQEQEDPILPMERRQQRLLDRQLQALKSNLPGHKGLYRLPWYLVMGLEDAGKTSLIQRAGQTYTLTNVTRNNRGDRNPFGFDWWIGDNGVLIDPDGELLSQNQGEGATGEIQNRLWNHFIGWLERSRPQRPLNGVILAVDLARLSTASDKQREAHAILLRTRLRELMEQLGSRLPVYVTFTKMDLMYGFAPFVRTLSKAEKDKALGFTFRLDGQQDHDQWLEQFADRYNDMVDELSQRLPDVLADTRDNEERAAAYSFTRQLAGLKTTMEQFLTDLLSADAFSTPALVRGTYFTSVLQEGVPEDAFVSAAAHNYQMTSPIQPAQRGGQSVSLFTKGLFPEVIYPEAGLAGDNRKVVGKRRRKVAVAAAVAVCAGAGMTAGWQHYFIKNADAAAQVENRVNAFINNWQPVGYEPDSTGRNLLQPLDELREATMAFGDYRNEWSLVADMGLYQGHKVGPEVDAAYLDMLAYQYLPALMFGVMEEMGRAPDNSTERLEHLRVLRMLYDASGRRSDLVAAYMRSYWQNRFPGQREVQNRLYGHLQYAMAHTNLAGMAAEGDQTATMALAPFRSSVQWAQHELGRISTPDRVYRDLQVEANREFQAPLELARSSGPAFSTVFTRMDAYGEPLGDELPSADDPLSIPALLTREGLEKWFLRKSGSVTELALVDAWVLGRRNDVDFSKADEAELLASLQTLYAENYAEAWRTAVSRLDVHRFEDLNHGVRILESLTSGHEPLARFLGQVQSNTRLIPVGDGEAEAARKLLEQSPHFRMLQDIERQFADLNRLTRKQGDQPSGLDEIMQVVGELHEYLRNIQESPDAGKAALSAARARMGLQGADPIFTLQRMANHQPEPLNRVLNRLATESWRVVLDRAVAQLEREWYREVYQPFQQNLARHYPFTAGAGRDAALQDFERFFAPDGILETFYNDNLKLFLEDHPEHVGDARRASLVRRDVVASLDRARQIRQAFFTRSGTLDVEFALEPLNLTNNKRRAVVNIDGQLVEFSHGPRQSIPLVWPNTLRDSVESRITLVPIQVNRSPRSISESGPWALFRLLDKAEIAGVSSNAVDVKFTVDDGEMRYRLHAASNTNPFTQQLLSGYRIPRSLY
>NZ_CP014754.1|WP_068351499.1|2574507_2576631_+|type-VI-secretion-system-tip-protein-VgrG
MPQASGLQFTARVGEFPSDHFSVVGFKLAEQLSSLFHGRLELASTDPDVAAADVLEQPVDLVVWQDGQPLRRFTGVVNEFVRGNTGHRRTAYEVVIQPPAWRLGLMHNSRIFQTQSTDTIVRTLLEERGIIDTVFDFKRPPEEREYCVQHRESDLQFIERLAAEEGWHYRYQHGSVDGEEQPALIIADHHGDAPKLDPVPCNTQAGGSSKQACVFSFAYEERIKAASVAMKDYTFKNPAYALMHEHSAGGVNHREDYQHYDYPGRYKADASGQPFTQARLDALRNDASLAQGESNRPDFTPGAKVELQDHDSQSLNREWLLTAITHTGKQPQAMEEEGGSEPTSYHNDFTAIPADKTWRPVCEHKPMMDGPQMAIVTGPEGEEIHCDQYGRVKVRFPWDRYSKNDEHSSAWLRVAQGWAGGQYGFMALPRIGNEVIVSFLDGDPDQPIITGRTYHATNTPPYALPEHKTRTTLKTKTHKGEGSNELRFEDEADQEQIYVHAQKDLDLLTENNRTEVIKNDSHLTVENNRFSHTKGNSHHTVDREKREQTGKDHSFNVTGTLHLKAGTAWLSDSGTELHIKAGQKAVIEAGAEITLKAGGSFVKIDPSGVALGGASIKMNAGGAGGKGSGQKVQVPERPGLVTAAGGVVAPVALAEVDQRLDAEPKAIVAHRLKQARMQGTAIVEQCQQQPDGSCPLGNCPCGKNQSA
>NZ_CP014754.1|WP_058090733.1|2576627_2577188_+|DUF4123-domain-containing-protein
MIGGERSVALPKPSSDKVRYLVLEARQNPPVVRSLYAQADNPNWVHLFAETDWQQYLTESPVVLEANQSSPEYQWALKGLKEGRLTGLILESSEGLESVTQWLRARLKVRFDGQRQGLLRFYDPDVWHRLSPVVQDQADVVERVIYWHGDSGEARWLTTEKPSPFNMFPVPTLNESQWQALNIVIA
>NZ_CP014754.1|WP_058090732.1|2577227_2581346_+|hypothetical-protein
MSENNSNQVAGSCGPACEGELLFVEVMGRDHPKGHAFRIFDEQNVERQEKLESRVAVEDLGDSLLHIWPWQGEPNRSLWLEIAADEGDPIHVPFLKSATAVQRESERQHHVILPIIPTTLISGVTLKGNNPAHRVVSRPGFIYLFHEGKLWRELEVRMNEQGVTSYHDVALENYRQTGGEFEPGYRAVTGAALSEIWVPARIDGNWISIDAAYSESQWPGARVNYLQGKPLVRVDRCSTIKMELADPKHQDGETYTINPGLTNAFLASHLAPQRSRNPLIEWHFDRPENYLFDLKGSYAASAAEAAVGIHQRQEDPDPEDVIHEDERPEMSVLAKCLYRTLKEVEVADEPTSDEEGLGILDWPENIQTVGDCIKDARDRLIGAIQLDDPVGKLRYLQQRRQVAAWFSNAAVRRAKARPYFESALLMNAAVVPSNIGGRLNPLHKYMSELNDEGRKELERSIAVSERRLAVEYGANLQTDLLDLLQRSWVQHSLVDLFTHDGYDYAGAFHFLVSLIQEVIKESAECDVLAARTDGPMTGKGKEWLLDICRAGRGQLLYTLLFPSVTIEDLKQPYVTPAEPDENTGDGQFRASELASLEDEDLPEIDLVKTRDGLELAAAAETGIFSTVFASSMRIGTQTLLSIHGNLWSAIQSASQPLISNNQKLKDLDAQLKAIETEMDRLRQERADAERASTEARDNAVDERNEGHRQAEQARQKARANLARIAAQESEIDLRSKNLAGQRQLLYAGLIQARMKLYSGSIEQLRASLPSLMGSIRLERFSKAKQKRFLVLGITGLEELPEGMRAIQMFGDITELTEGKVHHRASTNKSRARAQGLPSGKASEVLLLVVPENERMAKILKHLDAAQRQYSGALKELGIWERYAAQSSNLSAAATAVVARRVAEAELKLDKALSQFEKVDGNLRAANDAVGDLEANRNTLGAKVRELEETVTKTEKRRLYRVLNSPLLPASIMLMELHNVSGVVAAYERNFRTKGEWNAISGAGSAYYDIGYASVMLTERFLQNVAIVERVSKQFLSREWNGRFATKLAGYLGGPLTWGRALGGVGGVLMSLVYALDANYFFRMGNTGASVGAGIVAAGGVALTFASVAGSAGLLFLGPAGWLALGVALAISGTAVMAWFNEKPIEIWMRHGPFGSMAEKPFLKEPQEAYYRLASLLMGVSVVIEPNPLRGRALRRELAEEDEDRLAVLREANTRLRIESAFPGLFKGAEMVAVKPHLQLVETKSERGYLLGVSDMSRTMVRPFAKTELKEHVLLEEEFDGGTYVYLKTPLTRSKGSERWFGAVDLKETWTYHWDVRIQVQIHAEEGKAPMVFPAPDPEDPLTYNKDDPKHAQPDFSKKGRPFWYEEQVRYYG
>NZ_CP014754.1|WP_156510005.1|2581338_2582496_+|hypothetical-protein
MVDPTNTGTDFGGYYGTDAYCPESVPEQPVQSQDFNHSKLGRSAGFRLPWGRAQDVMPSNLFARWPPKALREIELIGNLLEEAGHQGQQDHQSIRYAPLAFRSKLINALEVFGKALFWVSLPLGVVIYVMHAYLTDSKLLIALQDVYSFILMITGIPALMWLSSTLVFTLFPRWSVKAGRGPEWELDRRNGMVRVWSYRRAVPFIGPRKVTVFEAPFYEFDGFVAGGATRYGPRFDFILCHRYSKLTVHIGDILLGWHHNPRPCYALWDFLQNYMDVSRPLPEFPVLEPHRHKDPVTAEHDRKSGRPERYWRDMDDKTFKQKEDEMLSRVLSIDTEQRPNLMAKKVRYAHMTPEDMLAYGRGSRRGRNGARAPRPSVGYVQRDWK
>NZ_CP014754.1|WP_058090730.1|2582562_2583108_+|hypothetical-protein
MDSTYSKISTVKHQVYLKNRALMYTTGILLFGTVLGFGYLFYLEATAAFALGFILFLSVAVLGLLRIDFGKINHMIEITPQFLRVDDCILKEIAWQDIAHLKLESHFSKGIKRSALLIVYLKNNHTYDLPEPGRILSRHRSDGGIVATNLYNYAGDYKDIFNSLCEARESGQFVLWNRSQH
>NZ_CP014754.1|WP_058090729.1|2583230_2583473_+|hypothetical-protein
MSGSRDHLEMSFMSIQCFADDGKLDAEELGSIVRIAERDGVIDENEIRVLRNIISRIKPEEVDDAMRRRLQEIERKISAA

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Crispr_ID: NZ_CP014754_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014754_5

3531232-3534047

TypeI

I-C

Consensus_repeat	Method
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	PILER-CR
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CRT

42 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL

The CRISPR arrays of NZ_CP014754_5

>merge|NZ_CP014754|5|3531232-3534047|PILER-CR,CRISPRCasFinder,CRT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAACCGCCTGCATGTGTCGGGTTTCGTATTCGCCTTTCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACCGTTACCGCCTGGACATGGCCGGCGCGGCCAATAGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACCGGTAGGTGCGCAGGGTTCGCGCCAACGCCCGTATGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACCCCTGTTTCAGTGCGTGGAAGGGTGAGAAAAAGGCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACCTCACTCAGGGTGACACGAACTACCTGATCTGGGGTGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACTCCAATCTCCGGCATTCAGCGTTAAACGCTTTGCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACCTTGTTTGCCTCGCGGATCTCGCATGTGAAGCCCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACGTTTCCGGTGACGATTTGAGGGAAAGGCGCCCCGGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACAGGCCAGCGCGGACATTGCCGGCCGTGCCCTGGAGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACAATATTGGCGACCTTATTGATCGGCCTAAATACCGGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACAATCAGGTTTGTCTCGAAATCTTTCATTGGACGCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACCGCGAACAGATCACGCAGCGGGACATCAAGTCAAGGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACCGTCTAGCGACATGCACGTAATGGATGTCCTGCCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACAAATTTTCGAGCGGCAATTATTTCCGATCTGTAGGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACCTCAAGCTGCAGCCGGAGTTGTTCGCCGTACTCGCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACTCCGTAAGAATTCGATGAATAGGCTTATAGCCAACGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACACGAAATATCTGGGAGTCTTCCAGCAGCGTTTCCCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACTTTGCGAGGACGCTTCCGGCCTCTCATGGCTTTGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACACGAATGCCACGCGAGGCGTTGCCCTGTCCAAGCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACCACCATGCGACCGTCTCTTTATCGACCGTCCGAGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACGTGTCACCCTGAGTGAGGAAAGCCGTGAGTTTGTGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACAAAGATGGAGTGATAAGTACAAACGACGCGATAGGGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACTGGTGGAGACGCTGGCGGAAGAAGCTGACGACGAGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACTGGCGCTAATGATCAAGGTCACAACCAAAAAGCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACACCTATCTAAAGTTTGAGCCCATGCCTTTACATCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACAAGCAAAACGCCTAATATTATATGGAGCTACTGAGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACAAGCTGGTAACCTTTGCTCCGACCGGGGCGCGCCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACCCGCCTAGATTTTGGGTTGCCTGATATCCCGGGTGGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACATCAGCGATATGGCCAATGGTGGCCGGATGAGTCAAGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACAGGAGAGCCAGGGCCATGACTGAAACGCCAGAAAGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACCACCACTTTACCATACACCACAACCGGCGCAGGGCGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACACAATGCGCGTGCCTGCGGAGTGTGACCGGGATGGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACGATTGGTGTGTGCCTTGTGGGCGGAAAGCCGGGTGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACAGCTACCAGGTTGCGCACCGTTTCTTCAATGGAGGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACTCTGGAGTCTGCTATGGAGGTTTGGAAGTAATGGGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACACGGGGCCATGGACGAAAAGCTGGAATACAACAAGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACTCCAGCAACCAAGTGCCGGTTTGAGGTACGCTGTGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACTGAGCAGGCAGACCGTTACGCCCAACGCCTCCGTGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACTTCTATGCCTATGTCCATCTCAAAGGTGCCGGGGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACGCCCTTGGCCAGAGCGTGATGGGATGCTTGGCGCTGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACTCCATGTGGTCTGCGCTGACCTGATACCAGCTGATGTCGCGCCCCTCGCGGGCGCGTGGATTGAAACAACTCAAACTCGGCAGTCCAGAGCCTACGCAAAGGTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC

>NZ_CP014754|5|1|3531232-3534047|PILER-CR
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGCCTGCATGTGTCGGGTTTCGTATTCGCCTTTC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGTTACCGCCTGGACATGGCCGGCGCGGCCAATA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGGTAGGTGCGCAGGGTTCGCGCCAACGCCCGTAT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CCCTGTTTCAGTGCGTGGAAGGGTGAGAAAAAGGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CTCACTCAGGGTGACACGAACTACCTGATCTGGGGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCCAATCTCCGGCATTCAGCGTTAAACGCTTTGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CTTGTTTGCCTCGCGGATCTCGCATGTGAAGCCC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	GTTTCCGGTGACGATTTGAGGGAAAGGCGCCCCG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AGGCCAGCGCGGACATTGCCGGCCGTGCCCTGGA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AATATTGGCGACCTTATTGATCGGCCTAAATACCG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AATCAGGTTTGTCTCGAAATCTTTCATTGGACGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGCGAACAGATCACGCAGCGGGACATCAAGTCAAG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGTCTAGCGACATGCACGTAATGGATGTCCTGCC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AAATTTTCGAGCGGCAATTATTTCCGATCTGTAG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CTCAAGCTGCAGCCGGAGTTGTTCGCCGTACTCGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCCGTAAGAATTCGATGAATAGGCTTATAGCCAAC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACGAAATATCTGGGAGTCTTCCAGCAGCGTTTCCC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TTTGCGAGGACGCTTCCGGCCTCTCATGGCTTT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACGAATGCCACGCGAGGCGTTGCCCTGTCCAAGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CACCATGCGACCGTCTCTTTATCGACCGTCCGA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	GTGTCACCCTGAGTGAGGAAAGCCGTGAGTTTGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AAAGATGGAGTGATAAGTACAAACGACGCGATAGG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TGGTGGAGACGCTGGCGGAAGAAGCTGACGACGA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TGGCGCTAATGATCAAGGTCACAACCAAAAAGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACCTATCTAAAGTTTGAGCCCATGCCTTTACATC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AAGCAAAACGCCTAATATTATATGGAGCTACTGA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AAGCTGGTAACCTTTGCTCCGACCGGGGCGCGCC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CCGCCTAGATTTTGGGTTGCCTGATATCCCGGGTG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ATCAGCGATATGGCCAATGGTGGCCGGATGAGTCAA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AGGAGAGCCAGGGCCATGACTGAAACGCCAGAAA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CACCACTTTACCATACACCACAACCGGCGCAGGGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACAATGCGCGTGCCTGCGGAGTGTGACCGGGATG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	GATTGGTGTGTGCCTTGTGGGCGGAAAGCCGGGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AGCTACCAGGTTGCGCACCGTTTCTTCAATGGAG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCTGGAGTCTGCTATGGAGGTTTGGAAGTAATGG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACGGGGCCATGGACGAAAAGCTGGAATACAACAA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCCAGCAACCAAGTGCCGGTTTGAGGTACGCTGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TGAGCAGGCAGACCGTTACGCCCAACGCCTCCGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TTCTATGCCTATGTCCATCTCAAAGGTGCCGGG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	GCCCTTGGCCAGAGCGTGATGGGATGCTTGGCGCT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCCATGTGGTCTGCGCTGACCTGATACCAGCTGAT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AACTCAAACTCGGCAGTCCAGAGCCTACGCAAAG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC

>NZ_CP014754|5|5|3531232-3534047|CRISPRCasFinder
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGCCTGCATGTGTCGGGTTTCGTATTCGCCTTTC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGTTACCGCCTGGACATGGCCGGCGCGGCCAATA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGGTAGGTGCGCAGGGTTCGCGCCAACGCCCGTAT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CCCTGTTTCAGTGCGTGGAAGGGTGAGAAAAAGGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CTCACTCAGGGTGACACGAACTACCTGATCTGGGGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCCAATCTCCGGCATTCAGCGTTAAACGCTTTGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CTTGTTTGCCTCGCGGATCTCGCATGTGAAGCCC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	GTTTCCGGTGACGATTTGAGGGAAAGGCGCCCCG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AGGCCAGCGCGGACATTGCCGGCCGTGCCCTGGA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AATATTGGCGACCTTATTGATCGGCCTAAATACCG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AATCAGGTTTGTCTCGAAATCTTTCATTGGACGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGCGAACAGATCACGCAGCGGGACATCAAGTCAAG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGTCTAGCGACATGCACGTAATGGATGTCCTGCC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AAATTTTCGAGCGGCAATTATTTCCGATCTGTAG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CTCAAGCTGCAGCCGGAGTTGTTCGCCGTACTCGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCCGTAAGAATTCGATGAATAGGCTTATAGCCAAC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACGAAATATCTGGGAGTCTTCCAGCAGCGTTTCCC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TTTGCGAGGACGCTTCCGGCCTCTCATGGCTTT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACGAATGCCACGCGAGGCGTTGCCCTGTCCAAGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CACCATGCGACCGTCTCTTTATCGACCGTCCGA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	GTGTCACCCTGAGTGAGGAAAGCCGTGAGTTTGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AAAGATGGAGTGATAAGTACAAACGACGCGATAGG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TGGTGGAGACGCTGGCGGAAGAAGCTGACGACGA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TGGCGCTAATGATCAAGGTCACAACCAAAAAGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACCTATCTAAAGTTTGAGCCCATGCCTTTACATC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AAGCAAAACGCCTAATATTATATGGAGCTACTGA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AAGCTGGTAACCTTTGCTCCGACCGGGGCGCGCC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CCGCCTAGATTTTGGGTTGCCTGATATCCCGGGTG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ATCAGCGATATGGCCAATGGTGGCCGGATGAGTCAA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AGGAGAGCCAGGGCCATGACTGAAACGCCAGAAA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CACCACTTTACCATACACCACAACCGGCGCAGGGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACAATGCGCGTGCCTGCGGAGTGTGACCGGGATG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	GATTGGTGTGTGCCTTGTGGGCGGAAAGCCGGGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AGCTACCAGGTTGCGCACCGTTTCTTCAATGGAG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCTGGAGTCTGCTATGGAGGTTTGGAAGTAATGG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACGGGGCCATGGACGAAAAGCTGGAATACAACAA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCCAGCAACCAAGTGCCGGTTTGAGGTACGCTGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TGAGCAGGCAGACCGTTACGCCCAACGCCTCCGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TTCTATGCCTATGTCCATCTCAAAGGTGCCGGG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	GCCCTTGGCCAGAGCGTGATGGGATGCTTGGCGCT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCCATGTGGTCTGCGCTGACCTGATACCAGCTGAT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AACTCAAACTCGGCAGTCCAGAGCCTACGCAAAG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC

>NZ_CP014754|5|1|3531232-3534047|CRT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGCCTGCATGTGTCGGGTTTCGTATTCGCCTTTC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGTTACCGCCTGGACATGGCCGGCGCGGCCAATA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGGTAGGTGCGCAGGGTTCGCGCCAACGCCCGTAT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CCCTGTTTCAGTGCGTGGAAGGGTGAGAAAAAGGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CTCACTCAGGGTGACACGAACTACCTGATCTGGGGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCCAATCTCCGGCATTCAGCGTTAAACGCTTTGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CTTGTTTGCCTCGCGGATCTCGCATGTGAAGCCC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	GTTTCCGGTGACGATTTGAGGGAAAGGCGCCCCG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AGGCCAGCGCGGACATTGCCGGCCGTGCCCTGGA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AATATTGGCGACCTTATTGATCGGCCTAAATACCG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AATCAGGTTTGTCTCGAAATCTTTCATTGGACGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGCGAACAGATCACGCAGCGGGACATCAAGTCAAG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CGTCTAGCGACATGCACGTAATGGATGTCCTGCC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AAATTTTCGAGCGGCAATTATTTCCGATCTGTAG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CTCAAGCTGCAGCCGGAGTTGTTCGCCGTACTCGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCCGTAAGAATTCGATGAATAGGCTTATAGCCAAC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACGAAATATCTGGGAGTCTTCCAGCAGCGTTTCCC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TTTGCGAGGACGCTTCCGGCCTCTCATGGCTTT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACGAATGCCACGCGAGGCGTTGCCCTGTCCAAGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CACCATGCGACCGTCTCTTTATCGACCGTCCGA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	GTGTCACCCTGAGTGAGGAAAGCCGTGAGTTTGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AAAGATGGAGTGATAAGTACAAACGACGCGATAGG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TGGTGGAGACGCTGGCGGAAGAAGCTGACGACGA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TGGCGCTAATGATCAAGGTCACAACCAAAAAGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACCTATCTAAAGTTTGAGCCCATGCCTTTACATC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AAGCAAAACGCCTAATATTATATGGAGCTACTGA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AAGCTGGTAACCTTTGCTCCGACCGGGGCGCGCC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CCGCCTAGATTTTGGGTTGCCTGATATCCCGGGTG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ATCAGCGATATGGCCAATGGTGGCCGGATGAGTCAA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AGGAGAGCCAGGGCCATGACTGAAACGCCAGAAA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	CACCACTTTACCATACACCACAACCGGCGCAGGGC
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACAATGCGCGTGCCTGCGGAGTGTGACCGGGATG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	GATTGGTGTGTGCCTTGTGGGCGGAAAGCCGGGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AGCTACCAGGTTGCGCACCGTTTCTTCAATGGAG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCTGGAGTCTGCTATGGAGGTTTGGAAGTAATGG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	ACGGGGCCATGGACGAAAAGCTGGAATACAACAA
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCCAGCAACCAAGTGCCGGTTTGAGGTACGCTGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TGAGCAGGCAGACCGTTACGCCCAACGCCTCCGT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TTCTATGCCTATGTCCATCTCAAAGGTGCCGGG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	GCCCTTGGCCAGAGCGTGATGGGATGCTTGGCGCT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	TCCATGTGGTCTGCGCTGACCTGATACCAGCTGAT
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC	AACTCAAACTCGGCAGTCCAGAGCCTACGCAAAG
GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014754.1\|WP_022987784.1\|3530759_3531053_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_CP014754.1\|WP_058091866.1\|3529727_3530747_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP014754.1\|WP_058091745.1\|3544934_3545261_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_156510075.1\|3543688_3544279_+\|DUF2931-family-protein	unknown	unknown	gnl\|CDD\|371398
NZ_CP014754.1\|WP_076657239.1\|3540755_3542090_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370774
NZ_CP014754.1\|WP_058091869.1\|3525972_3527988_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP014754.1\|WP_058092803.1\|3538892_3539909_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271183
NZ_CP014754.1\|WP_058091746.1\|3546667_3547645_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270288
NZ_CP014754.1\|WP_058091870.1\|3525274_3525976_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP014754.1\|WP_058091867.1\|3528861_3529086_+\|type-II-toxin-antitoxin-system-MqsA-family-antitoxin	unknown	unknown	gnl\|CDD\|240606
NZ_CP014754.1\|WP_058091871.1\|3522775_3525259_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP014754.1\|WP_058092926.1\|3534830_3535586_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP014754.1\|WP_068351350.1\|3536647_3537910_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271188
NZ_CP014754.1\|WP_058091868.1\|3527984_3528827_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP014754.1\|WP_058091894.1\|3529104_3529731_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP014754.1\|WP_058091744.1\|3544324_3544954_+\|DUF2931-family-protein	unknown	unknown	gnl\|CDD\|371398
NZ_CP014754.1\|WP_058091872.1\|3521729_3522689_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP014754.1\|WP_058092802.1\|3537906_3538896_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271178
NZ_CP014754.1\|WP_068351333.1\|3542165_3543467_-\|IS1380-family-transposase	unknown	unknown	gnl\|CDD\|379340
NZ_CP014754.1\|WP_058091873.1\|3521224_3521650_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509

Protein	Function_ID	Function_description	E-value
NZ_CP014754.1\|WP_022987784.1\|3530759_3531053_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.4336e-33
NZ_CP014754.1\|WP_058091866.1\|3529727_3530747_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP014754.1\|WP_058091746.1\|3546667_3547645_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270288	cd13570, PBP2_TAXI_TRAP_like_2, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This subgroup includes uncharacterized periplasmic binding proteins that are related to Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family. TRAP transporters are comprised of an SBP (substrate-binding protein) and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function.	3.27233e-149
NZ_CP014754.1\|WP_156510075.1\|3543688_3544279_+\|DUF2931-family-protein	gnl\|CDD\|371398	pfam11153, DUF2931, Protein of unknown function (DUF2931). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.	6.02557e-05
NZ_CP014754.1\|WP_076657239.1\|3540755_3542090_+\|hypothetical-protein	gnl\|CDD\|370774	pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain (DUF2235). This domain, found in various hypothetical bacterial proteins, has no known function.	2.35325e-22
NZ_CP014754.1\|WP_058091869.1\|3525972_3527988_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	1.68722e-173
NZ_CP014754.1\|WP_058092803.1\|3538892_3539909_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271183	cd01182, INT_RitC_C_like, C-terminal catalytic domain of recombinase RitC, a component of the recombinase trio. Recombinases belonging to the RitA (also known as pAE1 due to its presence in the deletion prone region of plasmid pAE1 of Alcaligenes eutrophus H1), RitB, and RitC families are associated in a complex referred to as a Recombinase in Trio (RIT) element. These RIT elements consist of three adjacent and unidirectional overlapping genes, one from each family (ritABC in order of transcription). All three integrases contain a catalytic motif, suggesting that they are all active enzymes. However, their specific roles are not yet fully understood. All three families belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism.	5.75748e-62
NZ_CP014754.1\|WP_058091870.1\|3525274_3525976_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.56924e-101
NZ_CP014754.1\|WP_058091867.1\|3528861_3529086_+\|type-II-toxin-antitoxin-system-MqsA-family-antitoxin	gnl\|CDD\|240606	cd12870, MqsA, antitoxin MqsA for MqsR toxin. This family includes domains similar to the antitoxin MqsA that binds motility quorum-sensing regulator MqsR, a toxin that is highly upregulated in persisters (dormant cells found in biofilms that are a source of antibiotic resistance), thus forming a unique toxin:antitoxin (TA) pair. MqsA neutralizes MsqR toxicity. It binds its own promoter as well as those of genes important for E. coli physiology, such as mcbR and spy. It also binds zinc and has been shown to coordinate DNA via its C-terminal domain. This family also includes the B. subtilis YokU protein, which is functionally uncharacterized.	2.1722e-19
NZ_CP014754.1\|WP_058091871.1\|3522775_3525259_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.71647e-54
NZ_CP014754.1\|WP_058092926.1\|3534830_3535586_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.28875e-73
NZ_CP014754.1\|WP_068351350.1\|3536647_3537910_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271188	cd01188, INT_RitA_C_like, C-terminal catalytic domain of recombinase RitA, a component of the recombinase trio. Recombinases RitA (also known as pAE1), RitB, and RitC are encoded by three adjacent and overlapping genes. Collectively they are known as the Recombinase in Trio (RIT). This RitA family includes various bacterial integrases and integrases from the deletion-prone region of plasmid pAE1 of Alcaligenes eutrophus H1. All three integrases contain a catalytic motif, suggesting that they are all active enzymes. However, their specific roles are not fully understood. All three families belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.06988e-57
NZ_CP014754.1\|WP_058091868.1\|3527984_3528827_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	7.97088e-115
NZ_CP014754.1\|WP_058091894.1\|3529104_3529731_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	6.16073e-37
NZ_CP014754.1\|WP_058091744.1\|3544324_3544954_+\|DUF2931-family-protein	gnl\|CDD\|371398	pfam11153, DUF2931, Protein of unknown function (DUF2931). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.	9.32552e-10
NZ_CP014754.1\|WP_058091872.1\|3521729_3522689_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.78198e-43
NZ_CP014754.1\|WP_058092802.1\|3537906_3538896_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271178	cd00797, INT_RitB_C_like, C-terminal catalytic domain of recombinase RitB, a component of the recombinase trio. Recombinases belonging to the RitA (also known as pAE1 due to its presence in the deletion prone region of plasmid pAE1 of Alcaligenes eutrophus H1), RitB, and RitC families are associated in a complex referred to as a Recombinase in Trio (RIT) element. These RIT elements consist of three adjacent and unidirectional overlapping genes, one from each family (ritABC in order of transcription). All three integrases contain a catalytic motif, suggesting that they are all active enzymes. However, their specific roles are not yet fully understood. All three families belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism.	1.5938e-45
NZ_CP014754.1\|WP_068351333.1\|3542165_3543467_-\|IS1380-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	0
NZ_CP014754.1\|WP_058091873.1\|3521224_3521650_+\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	4.67912e-54

>NZ_CP014754.1|WP_022987784.1|3530759_3531053_+|CRISPR-associated-endonuclease-Cas2
MMVLVTYDISMEDPQGPARLRRVAKACLDYGVRVQYSVFECEVDPAQWTFFRDELLGLYDEEKDSLRFYKLGKNWKNRIEHHGAKPAPDIFRDAMIL
>NZ_CP014754.1|WP_058091866.1|3529727_3530747_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLQNSLYVTRQGAYVHKERETVVIEHERTKLMQVPIHSVSGLFCFGNVLVSPALMGFCGEKGVNLAFFTEYGRFYGRLQGKKSGNVLLRRAQYNADESTSLEIARSVVAAKLVGCRNVLLRQQRNHGETESLGRAVKHLAASIRLARHVDNLDSLRGIEGDAAAQYFAVFGGLINKGAREEFTFAGRNRRPPRDPVNALLSFVYSILGQDISAALNGVGLDPQVGYLHADRPGRDSLAQDLLEEFRPWLADRLVLSLINRKQLRAKDFVTESSGAVRMSDGARKTLLVSYQERKQQEVMHPFLKEKVPIGIIPHIQAMLLARHLRNDLERYPPCVFR
>NZ_CP014754.1|WP_058091894.1|3529104_3529731_+|CRISPR-associated-protein-Cas4
MLDEKLVPLSALQHYAFCPRQCALIHNEQVWAENWLTAQGQVLHQRVDRGEPETRKGIRYERGVLVSAESLGITGKLDLVEIELSTGTMKPVEYKRGKPKRDSWDRIQLCAQGLCLEEMQGRTVPSGALWYWQARHRDEVAFTDELREETRAVITEVRNLLRSGQTPKAAYEKKCDSCSLYDLCNPKLLGNDGSTRYVNELFDEVDRQ
>NZ_CP014754.1|WP_058091867.1|3528861_3529086_+|type-II-toxin-antitoxin-system-MqsA-family-antitoxin
MKCAICKNGETNLGTTTVTMTRGDATIVVKNVPAEICDNCGEYYLDDAISAKILSMAEEAIKQNQEVEVIQFAA
>NZ_CP014754.1|WP_058091868.1|3527984_3528827_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSVLSRKIDFAVVFSVKNANPNGDPLNGNRPRTNYEGYGEVSDVCLKRKIRDRLQDAGEVIFVQSDEKKTDGMTSLKNRAESEEYGLGKDAFNAKKSSPVKTAEQACQKWFDVRAFGQLFAFKADAKEGVSVPIRGPVSIHPAFSVEPVSITSSQITKSVSGEGDGSKRGSDTMGMKHRVDEAVYVAYGAISPQLAERTGFSDEDAEKFKQVLPRMFEGDASSARPEGSMTVEKVVWWEHGSKSGQYSSAKVHRSLNVGEDGGITLDELDGLTPEVIDGF
>NZ_CP014754.1|WP_058091869.1|3525972_3527988_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWMAKLYETYEKGMEFAESEGSALMPISHTLQNAHINIVLDGNGHFKRAGVLEKTQIVLPATERSAGRASGEAPHPLADKVHYVAADYPKYGGKKKAYFEGYLRQLQDWCDSEWSHPKVRAVLNYVKGRRVVEDLVESGICQLDDQGAYLLTKWALQDDSPPLLFKVLPKEQGTTEQGNALVCWSVETEGDPVPQTWLDTSVQESWIHYNAQSAGSPALCYVTGGYEPRASNHPAKLRHTGDKAKLISANDHSGFTFRGRFLNSSQAAGVSLEVTQKAHSALRWLISRQGHRNGDQVMVAWAVSGRELPDLFAATHEFDLNDYSTVDNSEDQNATLLRDLTKDLGQRFAHSLHLYMAGYRARLEPMESVVIMALDSATPGRMAITYYRDFIAEEYLEKVELWHQELAWPQRVSKEMKAGSGRKRTEVIWPVSAPSPWAILNAAYGDVIKSNEALKKNLYERLLPSIIEGRPIPRDLVDLTVRRASNPNGSEKWEWERNLGVACALYRGFHARHPSNSIRREYAMALDTEYDSRDYLYGRLLAVGERIEEMAMFLASESARSTQASRLMQRFADRPASTWLTIEKALTPYQQRLRTKSPALEGAYKTLLDSIFSSFRSPDDFSSDKRLSGEFLLGFHCQRKWLRDHKLSGGHWISKAEAETENTINEGIEQ
>NZ_CP014754.1|WP_058091870.1|3525274_3525976_+|type-I-C-CRISPR-associated-protein-Cas5
MQNSISFKVWGRYALFTDPVTKIGGEKCSYHVPTYEAIKGILKSVYWKPTITWVVDRVRVINPIRTQTKGTKPLVWGGGNSLAIYTFLRDVEYQVEAHFEWNEHRPELANDRIDGKHFAIAKRMLERGGRQDIFLGVRDCPGYVEPCEFGEGEGVYDELDEIGFGLMFHGFDYPDETGVDELHSRFWRATMKDGVLEYPRPEQCDVRQFVREMKPKQFEAGMNFLPVEQEEIL
>NZ_CP014754.1|WP_058091871.1|3522775_3525259_+|CRISPR-associated-helicase/endonuclease-Cas3
MKASEYIAHKRQADGANQSVLAHLEEVGELAEEFASKVGLGNAGRVIGLLHDFGKYSTDFQRYIKSATGDYDRDDADYVNAGSLKGKIDHSSAGAQWIWHKLRIVGQAGQGELCGQILSLCIASHHSGLIDCIDKEDEPAFQRRMNKAEEKTHLSECQANADQELLELLEGIGGADLVKELFEELQKLADFQKSVRDGLTVIESFRIGFLTRFLFSCLIDADRLNSAEFELPERRTERIARSSDKSWLVAIGRLEEWLESRPAENYVDELRREISENCQSRSGDRQGIYTLTVPTGGGKTYASLRYAMNHAQAHNLDRIIYVIPYTSIIEQNADAIRNVIERDGDEFPWVLEQHSNLEPERQTWQSKLVSENWDAPIVLTTTVQLLEAMFAGGTRGVRRLHQLANAVLVFDEIQTLPVSCVHLFCNAINFLVDYCGTTAVLCTATQPLLNQLGSPDKGQLDIPQGNELAGPVAKHFIALRRVEIRDMCKAGGWSVSEVSDLFLEQYRSVGSCLLIVNTKAWAKSVYEECKEQICTEGLFHLSTSQCAAHRKELLSTIRFRLDSGLPVMCVSTQLIEAGVDVDFACVIRFVAGLDSIAQAAGRCNRNGRLRDADGNLVKGLVYVVNPDHEATGMLKDIQVGKEVAERVLSEAHDDFLAPSAMERYFQYYFFSRADDMSYPLKPSQVGRTTSILNMLSTNQASNYEYSGRGQKVPLMKHSFKEAAKQFKAIDAPTEGVVVPYGRGVELINELCASPKEFDPGTYYQKLREAQQYSVNLFPNVVDKLKEVGALQEVQDGYGVYYLREEHYSATLGVSISEVAGQSFLGVW
>NZ_CP014754.1|WP_058091872.1|3521729_3522689_+|YafY-family-transcriptional-regulator
MSRFYRIYRIHELLRSAKKPVPMRRFMEELEASRNTITRDFEYLRDSLGAPIEYCREENGHHYAPEAPVFELPGFWMNPAELYALLACEYLLENVQPGLITNRLAPLRTRIRDLLGESGHDAETISERIRIQPIQTRSAEHQIFDPVAEATLAGKCLTFHYLSRSTGTDKLRTVHPQRLVHYRSNWYLLAICNEAKALRLFSLDRMSAPSVSADPSQKALKDDLDAFAGSGFGIFGGAATQIAHLKFTEHAARWVAEEIWHEEQKSEWQDGSYHLHVPYSDERELVMEVLRYGPDVEVVAPESLKREVVTRVRRMAEIY
>NZ_CP014754.1|WP_058091873.1|3521224_3521650_+|YjbQ-family-protein
MIWHQNTIELAPLPRGFHLVTNEILAQAPELTNCEVGLLHLFIQHTSASLAVNENADPDVRGDLERHFNVMVPQNAPHYEHTMEGPDDMPAHIKSVMIGPSLTLPISHGHLALGTWQGIYVCEHRDNAGSRKIVATLQGRW
>NZ_CP014754.1|WP_058092926.1|3534830_3535586_-|ATP-binding-protein
MLKHPTLDKLHALKLTGMAAALADQSATPDITDLSFEERLGLLVDREMTERDNRRMTSRLRRARLRHNAILEDIDYRNSRGLDKGLVQSLAGCQWVKEHLNVLITGPTGVGKTWLACALAHRACREGYTAQYVRLTRLLRELTIAKGDGQYAKLLTNLAKVDVLILDDWGLMKLSAENRRDLLEVLEDRHGRRSTIATSQLPIEEWHGVIGDATLADAILDRLVHNAYKINLRGESMRKRQAKLTDTEISE
>NZ_CP014754.1|WP_068351350.1|3536647_3537910_+|tyrosine-type-recombinase/integrase
MLEHYFVKPDTIDAIRASWIAEPIEQYVAWLAGHGYRPRVILRRVPLLRQFGEFARDHGATQWSELPTHVEPYVKHWVKVHAKNAYQAKRWVANDARTPIEQLLSLMLPDFRGTGRRRTSQDPFLVQAPGFFVYLREERGLRELSLRHYGHYLHNLEAYLARINLLHLSELTPAILSAFVVESGRRLSPHSMTGLCSSLRVFLRYLYREQLINRDLGATVESPRRYQLADLPRSISWDDVRRMLDVVDRRSALGKRDYAILLLLVTYGLRGHEVAGLTLENIDWKRERLLVPQRKAGHTTAYPLSSVVGEAILDYLKNARPHVEERRLFFRVLAPVRPVTAVTVSSRATHYLRKAGINVRRPGSHTLRHTCVQRLVDAEFNFKVIGDYVGHASPSSTRIYTKVDVETLRMVALGHEEVLP
>NZ_CP014754.1|WP_058092802.1|3537906_3538896_+|tyrosine-type-recombinase/integrase
MTASFHSVLGKDFSAYLSYKRALGRKFDTEELALQLFDRFLVEERVSDAALVQPALIEAFLASRPRTRPRSYNHLLGVLRCFFAWQVAQERLAHSPVRAHPQPVTSQLKPFLFEPAQVEDILTLASQLPDNSRAPCRGMVYRTIFSLMYGLGLRVGEIVHLRYRDVDCQRSLLVIDKSKFGKTRLVPFGPRMAQQIAVYLQFGVDRYGPWQPDDPVFSFSFFPERKPMRIETVSQTFHHLILKMDPYVPPGVRQPHLHCLRHSFAVATLLRWYRTGVDPNQRLFHLSTFMGHADPASTAWYLTITEALLREASQRFERFADPRREEELS
>NZ_CP014754.1|WP_058092803.1|3538892_3539909_+|tyrosine-type-recombinase/integrase
MTDQLGRLVFAFVEDHLKCQRGLRPASIRSYKESLRLFLQFAAKDKHCRITRLELADLTGERVRHFLQHLEQERGNGVRTRNQRLAALHTFFEYLAGREPCVLGEAQQIASIPVKRWQPGETLYLERDEINALFAALPTDHPQALRDQALLRFLYNTGARVQEVADLRATHLELGSEPRVRLHGKGDKWRTCPLWTRTAGLMQDLLEQNRQRRHSNDAVFLARNSAPLTRFGIYKIVRRHTVKVVKKSADGTVRHISPHVLRHTTAVHLLEAGVEVNVIRAWLGHVSLETTNRYAEITLRMKVDALRTCEPIWDSPAESHRKPVWRSNSELLQWLESL
>NZ_CP014754.1|WP_076657239.1|3540755_3542090_+|hypothetical-protein
MPWNQWQLSRGMGGRLRLESVATLVWNTQSGKTLRLGVFFDGTGNHRGNDQILANRDVTNVAKLYDLYRDDGLGSNYRRIYVNGPGTIDGQHTPNGFEASEDLMGLGLGIGPEGGHDRIEFAIRRMRRDIFAGDYEEVVFDVFGFSRGAALARHFVNLINEQPETVLLPQFKGASLFAPMLGVKSVSAFPPGVKARVNFVGLFDTVGSFYLPGDNANLDFNLNLSPSSAERVVHLTAHHEIRKNFPLSSIMDGNGSGPSHFTEIAVPGAHSDVGGGYENPDKGFENIEKIVLGIHSGLADGGHTQRTAIPQLEAQYARPGRTVVAVPQPNGDIHVQERRRTRKELAIYNLHRMHGLAVQAEVPLGGLDLTDIDHALPSALQSAIASWQSAGGSLETSRDYLHGFIHTSHSIYKFGLARISHRSPASLADCAGYRHYRSFAAEID
>NZ_CP014754.1|WP_068351333.1|3542165_3543467_-|IS1380-family-transposase
MVPEKLTFSPLSRRQIEADFSGGHITSDAGLLLLREVDKQHQLTQRLATVLDDARNPVLVRHKLQTMVRQRVFGVAAGYEDLNDHEALRADQALQTATGEDAILAGKSTLCRMEQRVDRQAVINAHELLWHHFIEQHETPPKEIVLDFDGTDIPVHGDQPGKFFNAYYDHHCYFPLYVFCGRHLLVSYLRTSNRSDSRHSWAILALLVKFIRQYWPDTRIVFRGDSGFYRPRLLSWCDRNNVDYLVGISKNSRLLKEVDVPSMLVRRAHGELGEKVSATYRFQYQAHTWKYPRWVVARLEEGEFGSNPRFVISSRYDDGLKLYYEQYCARGDMENRIKDQQLCLFADRTSSTRWWTNQWRLLLSGFAYTLFERLRAHLKKTPFERMSASNLRLKLIKVGAVIIRNTRRIRVLMSDAYPYKDELSDLVRQLVPG
>NZ_CP014754.1|WP_156510075.1|3543688_3544279_+|DUF2931-family-protein
MFSFLAVACSSEPREYDFAVSVAGGPQGWPVWVEDISFDETWSARGGALRGGYDRVPPGGAIVGISPKPAPSTVHARWFSFRTQTFYEVTFSLPEDLDGKLRKWYRDYPLDDYNHTLIVGFSGKGEALAWWEAFCNTCNYDRSHDFHTPLAEDVVAEIVEGDPGRYNVRTRDYVEEGIIPPPPAWLSRRADGDAVN
>NZ_CP014754.1|WP_058091744.1|3544324_3544954_+|DUF2931-family-protein
MRNNTVLRIGVIILLSLLVTACSSEPRKYDFAVSVAGGPEGWPVWVEEVIVDQSWRVPAGGIEHGFDQHPPMGGVAVLGPKPAPSKIYARWFSHRTEKFYEVTLSLPEDLDDKLRKWYRDYPRNDYIHTLIVGFSGKGEALGWWEAFCNTCNYDRSNDFSTPLVENVKGEVVDGDPGRYNVRTGEHVERGTIPPPPMWLIRQSDGDAGN
>NZ_CP014754.1|WP_058091745.1|3544934_3545261_+|hypothetical-protein
MATQEIEKQPLYEVTLSLPEDLDDKLRKWYRDYPLEDSNHTLIVGFSGKGEALAWWKAFCSTCNYDRSHDFHTPLIENVQAEVVEGDPSGYRLQTQELIDEGSMPSPW
>NZ_CP014754.1|WP_058091746.1|3546667_3547645_+|TAXI-family-TRAP-transporter-solute-binding-subunit
MKLQTILAAAIASSVVAGPVIAQDRAGWPESFTVGTASQGGTYFAYGSGWANFVAENLGVSGGAEITGGPVQNMALVHTGDLKFGLTTMGPARESMEGESPLAPGMKMDNVCAMFPMYETPFSIATLSSSGITSVSEIPDGATIGFGPAGSTSDTYFPRMMETLGVKFERRNGSWSDLGGQLQDGLIDVVAFAAGIPIPAVSQLEVQTDVNVIGMNDDEAKKIVDNFPVSEFVIPASTYQSLDAPSRVVSMWNFAMVNCDMPESFVYEITKLTMENNDKMVSIHKAARNSVPENYTKNKVLPWHPGAARWFNENGYPIEDAAIKQ

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Crispr_ID: NZ_CP014754_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014754_6

3918850-3918976

Orphan

Consensus_repeat	Method
ATGGGGACTGACCCCCTTTTACCTCGGCCCATCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014754_6

>merge|NZ_CP014754|6|3918850-3918976|CRISPRCasFinder
ATGGGGACTGACCCCCTTTTACCTCGGCCCATCTCCAAACCCCGATACCTGGTGCGTTTGGGGTCAGTCCCCGTTCGGGGACAGACCCCGTATGGGGACTGACCCACTTTTACCTCGGCCCATCTCC

>NZ_CP014754|6|6|3918850-3918976|CRISPRCasFinder
ATGGGGACTGACCCCCTTTTACCTCGGCCCATCTCC	AAACCCCGATACCTGGTGCGTTTGGGGTCAGTCCCCGTTCGGGGACAGACCCCGT
ATGGGGACTGACCCACTTTTACCTCGGCCCATCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014754.1\|WP_058093144.1\|3928877_3929759_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_058093143.1\|3926549_3926936_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014754.1\|WP_058093137.1\|3914526_3914979_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP014754.1\|WP_156510077.1\|3927523_3928873_+\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|376878
NZ_CP014754.1\|WP_022989370.1\|3910027_3910330_+\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|178961
NZ_CP014754.1\|WP_058093132.1\|3907651_3910024_+\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP014754.1\|WP_058093142.1\|3925602_3926403_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226553
NZ_CP014754.1\|WP_058093139.1\|3921477_3923070_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP014754.1\|WP_058093134.1\|3910788_3911928_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NZ_CP014754.1\|WP_058093141.1\|3924088_3925606_-\|inactive-transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|379600
NZ_CP014754.1\|WP_058093131.1\|3906580_3907579_+\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP014754.1\|WP_058093135.1\|3911929_3913273_-\|GntP-family-permease	unknown	unknown	gnl\|CDD\|225330
NZ_CP014754.1\|WP_058093138.1\|3915182_3918812_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	unknown	unknown	gnl\|CDD\|237018
NZ_CP014754.1\|WP_058093136.1\|3913425_3914517_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226355
NZ_CP014754.1\|WP_058093133.1\|3910310_3910676_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133393
NZ_CP014754.1\|WP_058093155.1\|3919207_3920299_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP014754.1\|WP_022989373.1\|3906088_3906442_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_CP014754.1\|WP_058093140.1\|3923139_3924087_-\|alpha-L-glutamate-ligase-like-protein	unknown	unknown	gnl\|CDD\|274070
NZ_CP014754.1\|WP_156510036.1\|3920367_3920823_+\|sn-glycerol-3-phosphate-transporter	unknown	unknown	unknown
NZ_CP014754.1\|WP_058093145.1\|3929786_3930806_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890

Protein	Function_ID	Function_description	E-value
NZ_CP014754.1\|WP_058093137.1\|3914526_3914979_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	6.83103e-55
NZ_CP014754.1\|WP_156510077.1\|3927523_3928873_+\|DNA-recombination-protein-RmuC	gnl\|CDD\|376878	pfam02646, RmuC, RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures.	2.21285e-131
NZ_CP014754.1\|WP_022989370.1\|3910027_3910330_+\|integration-host-factor-subunit-alpha	gnl\|CDD\|178961	PRK00285, ihfA, integration host factor subunit alpha; Reviewed.	5.37015e-63
NZ_CP014754.1\|WP_058093132.1\|3907651_3910024_+\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP014754.1\|WP_058093142.1\|3925602_3926403_-\|hypothetical-protein	gnl\|CDD\|226553	COG4067, COG4067, Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones].	1.24937e-37
NZ_CP014754.1\|WP_058093139.1\|3921477_3923070_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP014754.1\|WP_058093134.1\|3910788_3911928_-\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
NZ_CP014754.1\|WP_058093131.1\|3906580_3907579_+\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP014754.1\|WP_058093135.1\|3911929_3913273_-\|GntP-family-permease	gnl\|CDD\|225330	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism].	2.9181e-103
NZ_CP014754.1\|WP_058093138.1\|3915182_3918812_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	gnl\|CDD\|237018	PRK11905, PRK11905, bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP014754.1\|WP_058093136.1\|3913425_3914517_-\|hypothetical-protein	gnl\|CDD\|226355	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms].	6.71298e-89
NZ_CP014754.1\|WP_058093133.1\|3910310_3910676_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133393	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.89772e-35
NZ_CP014754.1\|WP_058093155.1\|3919207_3920299_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.98257e-31
NZ_CP014754.1\|WP_022989373.1\|3906088_3906442_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	4.53598e-64
NZ_CP014754.1\|WP_058093140.1\|3923139_3924087_-\|alpha-L-glutamate-ligase-like-protein	gnl\|CDD\|274070	TIGR02291, conserved_protein_of_unknown_function, alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.	6.30959e-134
NZ_CP014754.1\|WP_058093141.1\|3924088_3925606_-\|inactive-transglutaminase-family-protein	gnl\|CDD\|379600	pfam14402, 7TM_transglut, 7 transmembrane helices usually fused to an inactive transglutaminase. A family of seven transmembrane helices fused to an inactive transglutaminase domain. The transglutaminase domain is predicted to be extracellularly located. Members of this family are associated in gene neighborhoods with a pepsin-like peptidase and an ATP-grasp of the RimK-family. The ATP-grasp is predicted to modify the 7TM protein or a cofactor that interacts with it.	2.74942e-142
NZ_CP014754.1\|WP_058093145.1\|3929786_3930806_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	6.30294e-42

>NZ_CP014754.1|WP_058093138.1|3915182_3918812_+|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA
MSPQQSMTPELHNIRKAIRANYLADEYEVIHRLIADAQLSDDARVAISARAADLVRSVRSSARPTIMEKFLSEYGLTTKEGVALMCLAEALLRVPDNLTIHDLIEDKITSGNWGAHVGKAKSGLINSATLALLMTSNLLKDSERQSVGDTLRKLVKRLGEPVVRTVAGQAMKEMGRQFVLGRDIEEAQERGKAQEARGYTYSYDMLGEAARTDADAQRYYQAYSDAIDSISKRCEGDVRTNPGISVKLSALLARYEYGNKERVMNELMPRALKLAQKAAAANMGFNIDAEEQDRLDLSLDVIEAILSEPSLKGWDGFGVVVQAFAKRASQTLDWLYALSEKLDRRIMVRLVKGAYWDAEIKRAQVMGLSDFPVFTRKACSDVSYLACTKQLLDMTDRIYPQFATHNAHSVSAVLELAEGLGRDKFEFQRLHGMGESLHDQVLEDSGVPCRIYAPVGAHKDLLAYLVRRLLENGANSSFVNQIVDTSITPEEIAKDPIDVVKALGHNLSSKVIVHPSKLFGEQRRNSKGWDITDPVTVEEIDEGRNRYKSHQWQGGPVLAVEPSSDEVVEVRNPANPDDLVGHITYASEADVSAALDAARDGFKQWSALSAEDRAEMVRKVGDLYEENAHELFALTTREAGKSLLDAVAEIREAVDFAMFYANEGVRYKDAGEALGVVCCISPWNFPLAIFTGQILANLAAGNAVVAKPAEQTSLLAVRAVELMHQAGIPKAAIQLLPGTGATVGAGLTSDARVNGVCFTGSTLTAQRINKAMAEHMEPDAPLVAETGGLNAMIVDSTALPEQVVRDVLASSFQSAGQRCSALRMLYVQKDIADNLLEMLYGAMEELGIGDPWLLSTDVGPVIDENARKKINDHCQKFEQQGKLLKKIKVPEKGLFVSPAVLQVSGIEELEEEIFGPVLHVATFEAKDIDKVVDAVNAKGYGLTFGIHSRVDSRIEHIASRIKVGNTYVNRNQIGAIVGSQPFGGEGLSGTGPKAGGPQYVRRFLRAEVAHKRSESSNKVLGADKVQKLIDKLEKVEVPAADRRKEALRPWFKTVPAPLDLGYEEMPGPTGEQNHLSCHARGTILCLGPDAESAVEQAGTALSQGNKVVVIAPGAEKALADAIKAGLPVVAADGMIAPDALTQLEGYAAITSVAEKPLLKQYRQALARRDGALLPIITEHKLDQRYVIERHLCIDTTAAGGNASLIASAE
>NZ_CP014754.1|WP_058093137.1|3914526_3914979_-|winged-helix-turn-helix-transcriptional-regulator
MADLDRIDLSIIRELQKNGRITVTDLASRVGLSKTPCQIRMRRLEEQGYITGYSAMVNQTKLGLSHVAFAQVTLSDTSSKALAAFNTAVRQISAVEQCHMMAANFDYLLKVRTKNMAEYRQVLGEQISSLPHVLQTSTFVVMESVKDRGL
>NZ_CP014754.1|WP_058093136.1|3913425_3914517_-|hypothetical-protein
MNTLDQATAQRIVDRAMPVIGHSVNVMTPEGIIIASGDSRRVGEMHEGARTVARTGTPLVVDEAQAGEYPGVRPGVNLPVVMSGSVVAVVGISGTPDKVTPYADLLRITAELILEQAALIEVTRHRRNQIQNTLQALLDGELVPEDWPQQIGLDLHKPRIAVVLAANKPTLPWPPDMATLSRDLERTEPEALVLLTRQRYLAFFFTERPAAEALNAALGRIPATSRNSVSAATGTVFHSNLKACYESAEATLKAGNQRQPSGGHFSFQDFPLAALWQSLSPGWQQLQLNQAIRPLLAHPRREQYLKTLRTFIEADGDIQRCASQLHLHRNSVRYRLKGIETLTGWSPFRLEDLLFLYMAMENR
>NZ_CP014754.1|WP_058093135.1|3911929_3913273_-|GntP-family-permease
MHLVLILVAVIIFIVFATSRLKLNPFITLLLASFLAAFAFGLPLSEIETTIRAGFGNILGYIGLVIVLGTIIGVILERTGAAIVMAETIIKLLGQKFPTLTMSLVGFIVSIPVFCDSGYVILNSLKRSMARTLSVSPVAMTVALSTGLFATHTLVPPTPGPIAAAGNLGLENNLGLVIGIGLIFAIIAALAGLFWASRCKNMTSTELEQAEEAFEEARQHYGELPSAGKAFAPIFVPILLICVGSVASYPTAPLGDGLLYESLNFLGKPLNALLIGLGFALTLLQGKGKLDEFGRHTSKGLEVAAPIILITGAGGAFGAVLAATPLGDYLGDTLSTLGLGVLMPFIVAAALKSAQGSSTVALVTASALVAPLLPQLGLDSDMGRVLTVMAVGAGAMTVSHANDSYFWVVSQFSKMTVATAYKSHTTATLIMGLVTIAAVWLTSLAVL
>NZ_CP014754.1|WP_058093134.1|3910788_3911928_-|glycerate-kinase
MRIVIAPDSFKECLAAEQVAQAIARGWRQAAPDDQLVTVPLADGGEGTTRALTEARRGQLHTVKVTGPMGELVSAHYGLVNDGEIAIVEVAEASGLHCVPARSRNAATASSIGTGELILAALEHKPKTLIMGLGGSATTDGGAGILQALGARLLDDGGHPIPRGGAGLAELASLDLAPALERLAGVKLVVACDVNNPLLGPNGAAAVFGPQKGADSRQVVELDRNLGHFARLVEQQGMDIASFPGSGAAGGIGGMVAGILGAELRPGIELVMETVELESHLAQADLVITAEGAIDSQSAYGKTPAGVASLAKKYGVPVIGLAGKLGDELAELHRLGLSAAFSITPAPIPLQEAYSGAEKNLAQAAEQLARLVHSLPGRD
>NZ_CP014754.1|WP_058093133.1|3910310_3910676_+|MerR-family-transcriptional-regulator
MLEPSHNNELPAIPGKRYFTIGEVADLCAVKAHVLRYWEQEFPQLSPVKRRGNRRYYQRADVITIRQIRSLLYDQGYTIGGAKQKLSSSEVKDDTSQYKQLIRQMITELEEVLDVLNSPAR
>NZ_CP014754.1|WP_022989370.1|3910027_3910330_+|integration-host-factor-subunit-alpha
MAALTKADMAERLYEELGLNKREAKEMVEAFFDEIRGALSHNEQVKLSGFGNFDLRDKKQRPGRNPKTGEEIPISARRVVTFRPGQKLKQKVETYAGTES
>NZ_CP014754.1|WP_058093132.1|3907651_3910024_+|phenylalanine--tRNA-ligase-subunit-beta
MKFSEQWLREWVNPNLGSQELMDQITMAGLEVDGFEPVAGEFSGVVVGEVISAEPHPDADKLRVCQVSDGTNTVQVVCGAPNVRAGLKVPFAVVGAVLPGNFKIKKAKLRGQPSEGMLCSESELALSDNHDGLMELPADAPVGQDVADYLRLNDIAIDVDLTPNRSDCLSIKGLAREVGVLNSLLVEAPEIAPVEAAHSEVPDIRVEAPEGCPRYLGRVLRNVNLQAETPLWMQEKLRRSGIRSIDAAVDVTNYVMLELGQPMHAFDRDEISGGIIVRMAKAGEKLVLLDGQEVDLTPETLLIADHQKPIAIAGVMGGEHSGVSPKTRDLVLESAYFDPITLAGKAREYGLHTDASHRFERGVDYQLARDAMERATRLLMDIVGGEPGEIVEVASQEHLPKARVIDLREKRLADVLGLAIDRTTVEEILSRLGLHIDKLLKDGWRISVPSFRPDISIEEDLIEEVGRIFGYNNLPVTEPTGSLGLRAREEAVRPLSAIRNFFVAQGYHEAVTYSFVDPKIQQLIDPEREGIALANPISADLSVMRTTLWSGLLKTVVHNQNRQQPRIRLFETGLRFEKNDGEIDQQPMLAGVVVGNQAPENWVNGRRTADFFDVKGELESLFRLLGIEIQFIASQHPALHPGQTAELLRDGEHVGWLGTLHPQAQKNLELNGTILMFELFLNSIVTGYVPNFKDISKFPEVRRDLAIVIGSDVAFAQVEHVARRHAGEHLTALRVFDVYEGESLGEGNRSLALSLFWQHPERTLNEDEVHSLFNGVIDALKEELGATLRS
>NZ_CP014754.1|WP_058093131.1|3906580_3907579_+|phenylalanine--tRNA-ligase-subunit-alpha
MENLEQLVQDGLNAVENANDLQALDQIRVEYLGKKGVITQQAKTLGKLSAEERPAAGQKINEAKGQVEQAINARRADLETAAIEAKLASESIDVTLPGRGQDLGGLHPVTRTLQRIEEIFARAGYSVEQGPEIEDDYHNFEALNIPGHHPARAMHDTFYFNPGTLLRTHTSPVQIRTMEAGKPPFRMICPGRVYRCDSDMTHTPMFHQVEGLLVEKNVSFADLKSTVEEFLRVFFERDLKVRFRPSYFPFTEPSAEVDIEWGREADGSIKWLEVMGCGMVHPKVFEHCGIDAEEYRGFAFGLGVERLAMLRYGVKDLRMFFENDLRFLRQFR
>NZ_CP014754.1|WP_022989373.1|3906088_3906442_+|50S-ribosomal-protein-L20
MARVKRGVVARRRHKKILKQAKGYYGARSRVFRVAKQAVIKAGQYAYRDRRNRKRAFRALWIARINAGARANGLSYSRLIAGLKKANVEIDRKVLADLAMNEQQAFAAVVEKAKASL
>NZ_CP014754.1|WP_058093155.1|3919207_3920299_+|MFS-transporter
MLIVVVPVYGLQLGASPLVLGAVLSAQYLLPLALAIPLGGVVSRFGGRATLITGASLMVAGLLAMHFWPGFGGLVLGQLLVGLAHLQMVLAAQTIIANLGTGPRLEKYFGWYSTWLSGGQVIGPLLAGLLLNASGTAYVFLVMAAFALVAGLVGLWLTGQATERIQVTRKQAGFRAQWALMQSNRGVQLSVLVTVLGMFALGVYGSYLPVYLESLAISPVIIGVLVSLRAVVSMVIRPFMASIIQLAGGRVNTVFLSLVTVSAGIAFLGATEQVVVMGLLAVLVGIGSGLTQPLSMVILAESVDRAKRSGALGMRLMANRAIHFLAPLMFGLLLELGGFALAFGASGVAIAAALPIGRKLFKP
>NZ_CP014754.1|WP_156510036.1|3920367_3920823_+|sn-glycerol-3-phosphate-transporter
MTRLLIFLISVFAASAAYANETRWLLQTSVFTSHHNPKPEHNNDQKLVGLEYTRENDWVVGGASFLNSFSQRSAYVFTGRYFDFGPGPVFAKVTGGLMHGYRGEYRDKIPLNHLGVAPAIIPAVGVRGQYVSSELSFLGAAAVMITTGLQF
>NZ_CP014754.1|WP_058093139.1|3921477_3923070_+|BCCT-family-transporter
MGEVVKDEYQTDYVAGQDNIRPFGLDLHNWVFPVTSVIVVLFVIATLMFPTAAKETLDGMKWDIIGSFDWFFLISANIFVVVCLVLIFMPVGKIRLGGQDAKPEFSTLSWFAMLFAAGMGIGLMFWAVAEPVAYYTGWYETPFNVEANSAEARDMAMGATLYHWGLHPWAIYAVVALSLAFFAFNKNMPLTIRSAFFPLLKDKVWGWPGHIIDVLAVVATIFGLATSLGFGAQQAASGLDYLFGMGSGINVQMAIIVGVTALALISVLRGLDGGVKVLSNINMVTAGVLLFFVIFAGPTLAIVETIWITSSTYVANVVPLSNPFGRDDQAWLQGWTVFYWAWWISWSPFVGMFIARVSKGRTVREFVTAVLIIPTLITTVWMSGFGGAALEQIQQGMGALAEDGLTEVSLATFQMFANLPLTGIISFVGIVLVLVFFVTSSDSGSLVIDSITAGGKTDAPTAQRVFWVVMEGAIAAALIFGGGDDALGAIQAVAISAGLPFTVVLLIMTWGLLKGLTHERKLLLQRGELL
>NZ_CP014754.1|WP_058093140.1|3923139_3924087_-|alpha-L-glutamate-ligase-like-protein
MDWISPRKLRKLGILNMNRRNVDYIARYNERASYPLVDNKLKTKLAVSEYGVKTPELLQVVRRQHEISHFREMAEGLAGFAIKPAKGSGGKGITVITGRDGDHYIKASGARISVAMLERHLTNILAGLYSLAGTPDVAIVEDLVQSTPSLARYSFQGVPDIRIIIFQGYPVMAMLRLATKDSDGKANLHQGAVGVGLDVGTGRSLNAVQFNRPIKLHPDTGLALENIQIDSWEDMLEMASRCYEATGLGYMGVDLVVDAYKGPLLLELNARPGLAIQMANGEGLLPRLRNIEALKRPHFSPRERVQYAMGAFGKF
>NZ_CP014754.1|WP_058093141.1|3924088_3925606_-|inactive-transglutaminase-family-protein
MTVRSRAPFYAFVLLLIAAGISIATWRHIELGVPWMTGEQRPVWMIEARVDFVGQDEAAQISLHIPEQPPGFSILTEQAASPGYGFSIIETSGSRRAEWTKRDVSGPQTLYFKAQFVPDDSAGESARSRKPRPTPTFWEEPQATAVREVLRQANERSSSPESLTRELIRLLQPDSRTQNTTLLVADDNYLQLLVRMLNHAGIPARTADALKLEDARRRQQLMQFLQIHNGDRWLTFDPRTAEQGVPENLLLWRQGSESLLDVVGGDNSQVSFSMLRQTVPALQLATLEANKNGLGVLGFYQLPIEEQSMFRMLLLLPIGALIVAFMRIVIGVRTSGTFMPVLIAVAFVQTTLVPGLIAFLSVVAIGLLLRGYLSSLNLLLVSRISALIILVIFITAGLSIIGYQMGFNTGMTVTFFPMVIIAWTIERMSILWEEEGAREVMVQGSGSLFVAICAYLAMNTSLAGHLTFNFPELHLVVLGLILLMGQYTGYKLSELRRFTPMKAYD
>NZ_CP014754.1|WP_058093142.1|3925602_3926403_-|hypothetical-protein
MGYRFFQPRRFLMFVIPTMALVITGCSADRYFMVPKHNMEDLRTSVQTQRATQVTMENNATVRHEQLLHKSDAATQTILDAIATQVERPVCPPAAAPVCPAVAENQGRADRLKGKVIVGEIEKFYLAGPGLIYTARIDSGAETSSIHARNVKRFERDGSNWVRFEVPVPGADGEWVTMEREISRRVRVIQASAEEAERRVVVELQFAIGDHQQVAEFTLADRTNLTYEVLIGRNVLRDVMLIDVGKEYATELPDSYRRQAVNGDDS
>NZ_CP014754.1|WP_058093143.1|3926549_3926936_-|hypothetical-protein
MLKAFWRKLGVDTMPAKGAGCIDDEFCTSDEHSGRESVRVLPHITHTGEFHLERLTQLLNSRYGQSVPTNEHSAVSDQTLKDIVGFATRIQDQDIQRELLLFYLNCSPVIQEFLRSETALGREQLISP
>NZ_CP014754.1|WP_156510077.1|3927523_3928873_+|DNA-recombination-protein-RmuC
MENRLASADSELASRRDRLSQLEQENRDLRLRAESLSDEFNQLKVELREQQVTLDKERRSAAEKMELLEKNRDALKQEFENLANRIFDQKSERFSQQSKTSLDSLLNPFRDQLQDFRKRVEDVYTTETRDRQALRSEIKSLQDLNRQITEEAANLTRALKGDKKVQGNWGELILERVLERSGLRKGVEYETQGSYRDEDNQLLRPDVIVHLPDQRNLVVDSKVSLLAYQQWVVAEEDSARDEALKQHVEAVRSHIRSLSEKDYSQLNGLHSPDFVLLFMPIEPAFVAAFQQDENLFAEAFERKIIVVTPTTLLATLRTIENIWRYERQSQNARRIADRAGAVYDKLRVFVEAMERLGTQLHTAQGTYDNAMNTLTRGRGNLISQANRFVELGVRVKKELPKAIVEQAEVDADDEDADSGEPKHTELGAPTDAGSDAPEVAEEGTNGNQE
>NZ_CP014754.1|WP_058093144.1|3928877_3929759_+|hypothetical-protein
MLSPRILSLAGGRSFMAGLAMVASLAAVSAHGQSLAPEHEIRRLMLATEEAVAAERWGEASEYLNRLQKMETEKPADYFYYRGRAMLQAGHLNEARAALEAYVSRAGVDGQHYQQSLKLITDIEKENRANVRALANGNGEAKEPVAIIEPAGGQELKSLRQLYLADSDREALTIHLNALLETAGWRRDKTVVRLDRPADIRYRVSVANGNLNIQEITRNTDDTTVRKSVSLPVFGVNPQPRWDCEPAVGACWIYDPRDGSRLFQLAQNRNQVNEIALTLGRLIRNLQQGSSGS
>NZ_CP014754.1|WP_058093145.1|3929786_3930806_-|AraC-family-transcriptional-regulator
MSTLTVSKHFVEASLSGAERLGLDSRALLQEAGISPDLLRIDMARVSSDQFSGLMQAIWNRTGDEFMGMGPRKARTGTFATMCALVINCQTLEEVYEQAFRFSRLFEPMVSMELEINEDNARLVARIEGEIHDPSYFLRESILVIWHRLGSWLIGQPVELEKAEFSYPRPEHGDEYRHIFHCPLTFDSDCTALTFSKRFLSAPVIRDKPEMRQFLKTSPADLLSRPDESNTWTGRIRGLIGRDFSKPMPDFDWIAQELHTSPQTLRRRLKQENTSFQEIKDLLRRDMAIYYLSHQELPINDIAERVGFTEPSTFHRAFKKWTGVTPGAWREGERGDLAE

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Crispr_ID: NZ_CP014754_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014754_7

4293407-4293527

Orphan

Consensus_repeat	Method
GGGCAAGGACGGGCAAAGGTGGGTCAGTCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014754_7

>merge|NZ_CP014754|7|4293407-4293527|CRISPRCasFinder
GGGCAAGGACGGGCAAAGGTGGGTCAGTCCCCTTTGGGGACAGACCCTTGGGGGACTGACCCATTTTGGGCCCATGGGCTCTAGCTGCGGGGCAAGGACGGGCAAAAGTGGGTCAGTCCCC

>NZ_CP014754|7|7|4293407-4293527|CRISPRCasFinder
GGGCAAGGACGGGCAAAGGTGGGTCAGTCCCC	TTTGGGGACAGACCCTTGGGGGACTGACCCATTTTGGGCCCATGGGCTCTAGCTGCG
GGGCAAGGACGGGCAAAAGTGGGTCAGTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014754.1\|WP_058089490.1\|4304150_4306004_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182731
NZ_CP014754.1\|WP_058090431.1\|4289516_4290902_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP014754.1\|WP_068351614.1\|4306565_4309724_-\|pullulanase-type-alpha-1,6-glucosidase	unknown	unknown	gnl\|CDD\|273974
NZ_CP014754.1\|WP_058090428.1\|4286448_4287180_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP014754.1\|WP_058090434.1\|4295353_4296658_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP014754.1\|WP_068351537.1\|4299606_4300884_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP014754.1\|WP_058090426.1\|4280250_4282056_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176521
NZ_CP014754.1\|WP_058090429.1\|4287176_4287677_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|182734
NZ_CP014754.1\|WP_058089489.1\|4301076_4303494_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP014754.1\|WP_058090425.1\|4279413_4280184_+\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792
NZ_CP014754.1\|WP_058090432.1\|4291053_4293234_+\|malate-synthase-G	unknown	unknown	gnl\|CDD\|235097
NZ_CP014754.1\|WP_058090423.1\|4277435_4278314_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182768
NZ_CP014754.1\|WP_058090436.1\|4297534_4298818_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP014754.1\|WP_058089863.1\|4306075_4306504_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|199891
NZ_CP014754.1\|WP_058090430.1\|4287837_4289517_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NZ_CP014754.1\|WP_058090435.1\|4296822_4297458_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP014754.1\|WP_008174603.1\|4303731_4304004_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP014754.1\|WP_058090424.1\|4278404_4279193_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NZ_CP014754.1\|WP_058089492.1\|4309948_4311274_-\|maltoporin-LamB	unknown	unknown	gnl\|CDD\|236481
NZ_CP014754.1\|WP_058090427.1\|4282057_4283917_-\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|293739

Protein	Function_ID	Function_description	E-value
NZ_CP014754.1\|WP_058089490.1\|4304150_4306004_+\|peptidylprolyl-isomerase	gnl\|CDD\|182731	PRK10788, PRK10788, periplasmic folding chaperone; Provisional.	5.87665e-77
NZ_CP014754.1\|WP_058090431.1\|4289516_4290902_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP014754.1\|WP_068351614.1\|4306565_4309724_-\|pullulanase-type-alpha-1,6-glucosidase	gnl\|CDD\|273974	TIGR02103, pullulanase-like_protein_starch, alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP014754.1\|WP_058090428.1\|4286448_4287180_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.54455e-138
NZ_CP014754.1\|WP_058090434.1\|4295353_4296658_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	1.81606e-174
NZ_CP014754.1\|WP_068351537.1\|4299606_4300884_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	4.06864e-165
NZ_CP014754.1\|WP_058090426.1\|4280250_4282056_-\|hypothetical-protein	gnl\|CDD\|176521	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.	1.4486e-61
NZ_CP014754.1\|WP_058090429.1\|4287176_4287677_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	1.07033e-76
NZ_CP014754.1\|WP_058089489.1\|4301076_4303494_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP014754.1\|WP_058090425.1\|4279413_4280184_+\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	3.81912e-119
NZ_CP014754.1\|WP_058090432.1\|4291053_4293234_+\|malate-synthase-G	gnl\|CDD\|235097	PRK02999, PRK02999, malate synthase G; Provisional.	0
NZ_CP014754.1\|WP_058090423.1\|4277435_4278314_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182768	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional.	1.70694e-93
NZ_CP014754.1\|WP_058090436.1\|4297534_4298818_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_CP014754.1\|WP_058089863.1\|4306075_4306504_-\|hypothetical-protein	gnl\|CDD\|199891	cd02861, E_set_pullulanase_like, Early set domain associated with the catalytic domain of pullulanase-like proteins. E or "early" set domains are associated with the catalytic domain of pullulanase at either the N-terminal or C-terminal end, and in a few instances at both ends. Pullulanase (also called dextrinase or alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The E set domain of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase.	1.35043e-05
NZ_CP014754.1\|WP_058090430.1\|4287837_4289517_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NZ_CP014754.1\|WP_058090435.1\|4296822_4297458_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.51396e-156
NZ_CP014754.1\|WP_008174603.1\|4303731_4304004_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.26774e-46
NZ_CP014754.1\|WP_058090424.1\|4278404_4279193_-\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	2.15404e-13
NZ_CP014754.1\|WP_058089492.1\|4309948_4311274_-\|maltoporin-LamB	gnl\|CDD\|236481	PRK09360, lamB, maltoporin LamB.	5.16714e-136
NZ_CP014754.1\|WP_058090427.1\|4282057_4283917_-\|LTA-synthase-family-protein	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	2.3013e-37

>NZ_CP014754.1|WP_058090432.1|4291053_4293234_+|malate-synthase-G
MTERVQVGGIQIAKNLYDFVNNEAIPGTGVDADKFWAEFDKIVNELAPRNRELLAKRDALQEKMDAWNRDHKGQKLDMAEYKAFLKEIGYLVDEPADFKISTANVDPEIATMAGPQLVVPVMNARFALNAANARWGSLYDALYGTDAISEENGADKGRGYNPVRGAKVIEWARNLLDGSAPLASGSHKDAAKYYIDGGKLAVKLQNGEVTGLKDEAGFVGYTGAADAPTGVLLVKNGMHFEIQIDASHPIGKDDGANVKDVLMESALTTIMDCEDSVAAVDADDKVVAYKNWLGLMKGDLEESFEKGGQMMTRRMNGDRTYTGADGSELTLKGRSLLFVRNVGHLMTNPAILLKDGNEIPEGLMDGLVTSLIAIHDLKADGKFQNSTKGSVYIVKPKQHGPEEVAFTNEFFGRVEDALGLPRFTLKVGIMDEERRTTVNLKACIHAAKDRTVFINTGFLDRTGDEIHTSMELGPFIRKGPMKLATWINAYEQWNVDIGLEAGLSGVAQIGKGMWAMPDLMAGMLEAKIGHPKSGANTAWVPSPTAATLHATHYHQVNVFDVQKELANRQRASLDDILTVPVMDDPSSLSAEDIQQELDNNAQGILGYVVRWIDQGVGCSKVPDINDVGLMEDRATLRISSQLLCNWLYHGICSEEQIMETMKRMAAVVDKQNAGDPAYRNMAPNFDDSIAFQAAVDLVLKGREQPAGYTEPLLHAYRQKAKAKYGQ
>NZ_CP014754.1|WP_058090431.1|4289516_4290902_+|cysteine--tRNA-ligase
MRIYNTLTQQKEAFKTIEPGKVRMYVCGMTVYDYCHLGHARVLVAFDVVTRYLRHRGYDVTYVRNITDIDDKILRRADENGEVYTDLTDRMIHAMHEDEARLGVLAPSDEPRATAYIDDIIAMIQTLIAGNHAYAADNGDVYFAVDSFPDYGKLSKKKLEDLVAGARVDVQEAKRSPADFALWKAAKPGEVSWQSPWGDGRPGWHIECSAMSTKCLGDTFDIHGGGPDLLFPHHENEIAQSECATGHKFVHTWMHAGAIRVNKEKMSKSLGNFFTIREILEKYPAEVVRYFLVSSHYRSQVDYSEESLAEAGRTLTKLYHALRGITPAKDSDVPETDHDRRFAEVMDDDFNTAGAIAVLHAVANDINHHRREGDDEQAKRSAAILVRLGGVLGLLQQDPEAFFQADTGSELTAEDIEAMIQARADARKAKDFAGADRIRDELLEKGIILDDSREGTTWRRA
>NZ_CP014754.1|WP_058090430.1|4287837_4289517_+|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MSAESKKAHNFIQSLIEDAIAKGEHTGKVVTRFPPEPNGYLHVGHAKSICLNFGIAQTFGGECNLRFDDTNPEKESQEYIDAIKQDVEWLGYEWADEIRYASDYFDQLYAFAEELIEKGKAYVCALNAEQMAEYRGSLKEPGKNSPYRDRPVEESLQLFRDMRDGKFQNGELVLRAKIDMASPNINLRDPILYRIRYADHHQTGSKWCIYPMYDFTHPISDALEGITHSLCTLEFEDHRPLYDWVLDNITVPCHPRQIEFARLNLNYTITSKRKLKRLVDEHVVDGWNDPRMPTISGMRRRGYTPESIRSFCDMIGVNKAGGTVDVGMLEYAIREDLNDRAPRAMCVMRPLKVTLTNYPADQTETLTLPVHPQKPEMGERDVTWSQTLYIDREDFEVEPPRKWKRLAPEQAVRLRGGYVMTCKEVVRDDSGEIVELKCEYDPNTLGVNPEGYKPNGVIHWVSANDSVDTDINLYDRLFNHESPDSDKEGDFLDHLNPESLVVLKGARVEKSLAEPRTDLPYQFEREGYFFCDQELTAKAGKPVFNRTVTLRDSWGKGGK
>NZ_CP014754.1|WP_058090429.1|4287176_4287677_-|peptidyl-prolyl-cis-trans-isomerase
MILLQTNHGDIKLELDYEKAPETAKNFEQYVRDGFYDGLIFHRVISNFMVQGGGFEPGMTPRKTREPIKNEADNGLSNMVGTIAMARTMDPHSATAQFFINVENNGFLDHTAKNAEGWGYCVFGKVVEGMETVNNIRAVRTTMRAGHQDVPFEDVIIEKAEVLEDA
>NZ_CP014754.1|WP_058090428.1|4286448_4287180_-|UDP-2,3-diacylglucosamine-diphosphatase
MTTLFISDLHLEESRPDITDAFLTFLRERAAGVEQLYILGDFFEAWIGDDERTPLQEQIAAALKQLSDSGTRIFLMHGNRDFLIGEDFCHRAGATLLDDPTVIDLYGTPTLLLHGDSLCTADVEYQKFRANMRNPQMQKMMLARPLEDRQQMAKQLRALSMAKNQGKAEDIMDVTPEEVVKELEAHGVQLMIHGHTHRPAVHHLEANNKPARRIVLGDWHSHLWWLEVQPGKEAELKKQPLQT
>NZ_CP014754.1|WP_058090427.1|4282057_4283917_-|LTA-synthase-family-protein
MKGNQASLAACFIRTLFLAWIWLAVIRGLLIIQSGVIPSLPGTLGGDIAGAFLLAVFLHLSAGIVRALLITALGVALYVAGMHLTAHGTLFQLASAGKGMDSTFITGSLLNIYLITLPGYLTLAWLLHWLHRKWVPATERAPILLATSSVLVTGLYVLSFPSLTTPANNVVASTVAQVPGALLNPIGTAIGDETTELSEQLHRRTNFFHQQTSNFHNPEPPNVLLIMMEGLSGGYLPKVSHYHNLQPVVSLDTLEATFDSFGFRVYNNVLSMERQTDRGTFALVCGRYPDLRRPSEKMLAVAEDKANPDCLPKKLKDQGYTTAYWQAAPIEYMKKDQFMPRAGYENVTGAEAFGHAQEQDGWGPPDPKFFPDIAGRLAELSNQPGPWFVTTLNVGTHHPFNIGPEAEQELAAEQTKQSADEETTGLPAAQVARQNAMVVMANSLERFLTQLEQEGLLDNTLVIVTSDESGGFVRDDHETLPLNSNLGVLAIRSPGRPDLSDFAPENRIVAQFDIPMTILDATGNGHLAGNMLGRSLLSEPTEPARDLMLADTYTGMKYFLRESGTLLACTELTTRCSSWAFDPDRLFGSLQQTEDEPYLSLDERLALLEKATLLTPKGE
>NZ_CP014754.1|WP_058090426.1|4280250_4282056_-|hypothetical-protein
MLPLLKQGLILFRQHHRSLLALYLTFTGLSIAVFTPLITAAVSLLRPITGDAAITTGGLLDFLASPGGVLWLLVTLLLAAVLIVLQLAGVTLIAAQPGKHSTRAAIRALAGIGRRLPQLVLMATIQTLAHLLTALPFLAAMGFATHLLLNNFDPYLLNLERPPILWWFLGFCLLMLGAIVVANGSLFLRWILSIPALMLDQKTPMTALQQSARDTRGTHRETAGLLSLGIIAVLAMPAMVTLAFDLLAGSVFRLLPANTSLLLPVVILLVGSYLLVSLALTFLASSALGALIVARYRTIPGRRLQWQQPPSTRQDAKTGRRLWLLEVLVIALVLTQSVQVVSSLNQQDQVTITAHRGSAFKAPENTLSAIHQAIEDGADYVEIDVQLTADGVPVLWHDQDMERIFGKPERIGDVRYDDIRHLDAGSWFDDHFAHERIATLEHAVKATRGRVRLFVDLKPNRNERALVTAVVQTLQDNNAVQGTILAAADWPSLELAKQLEPGLKTALLAQFVVGPLWQDRYDILALRLNRATPAAVARAHKAGNELHVWTVNQPSDMARFLDMGVDNIITDRPDVLAELMAERAGLNDGERLAMQIRNWLR
>NZ_CP014754.1|WP_058090425.1|4279413_4280184_+|ferredoxin--NADP-reductase
MSNLMKETVTSVHHWNDTLFSFKTSRDPGFRFKNGHFVMIGLETDGKPLMRAYSIASANYEEELEFFSIKVPDGPLTSRLQKIKVGDEILVSRKPTGTLVLDNLLPGRNLWLISTGTGLAPFMSIIKDPEVYEAYDKVILTHGVRYVSELAYQQDIQDLPENEFFGEMVHGKLLYYPTVTREPFRNQGRLTDAMESGKITRDLGLPDFDVEQDRFMICGSPSMLKDTCSILNNMGFREARGGDMGHYVIERAFVEQ
>NZ_CP014754.1|WP_058090424.1|4278404_4279193_-|universal-stress-protein
MLDHLILTVDYTKEWEQAMEQLPALLKLLGTRKITLTYVLQTHKRLRPDDTEGSATERLRRIGEHLESSLGIATATHVARGFVAQEVQALAKKLNADGVVACNRSHRAAKELFFGNTALNLARTTKVPLLIIPVQDQPSAAEEEILLATDGSKASFNAQAAFEELMANRHTGRVVWAHSEEPEQSDEATEQRINELAERHPNVHRNILTGRPVDQILQTINETRPLLTIMGKRGSTPIQEIMIGSTTEHVAAGSPYPVLMIP
>NZ_CP014754.1|WP_058090423.1|4277435_4278314_-|LysR-family-transcriptional-regulator
MKYSFRQLEVFLAAAHFQNITRAAESLAMSQSAASSALKELESQFDIQLFDRVGKRLQLNELGRLYRPKAEALLAQARELEQAFSKHSEVGALKVGATLTIGNYLAVGVMAEYMSSPNHPKVSLEVANTSTIARRVRDFELDIGLIEGELQASELEVIPWREDRLVAFCYPAHPLAGKGKLTDDDLRAATWILREQGSGTRQSFERGMHGLLPDLNVLLELEHTEAIKRAVEANLGIGCLSEVVLADAFKRGSLVPLNVPHRPFDRHFYFILHKQKYRSAGIARWMTLCEEL
>NZ_CP014754.1|WP_058090434.1|4295353_4296658_+|trigger-factor
MQVSVETTSNIERRMTIGVPAQEIDQAVQKRLQETARSVRLNGFRPGKVPMSVVKRRFGDSVRQEVVGEAMRDHYIKALQEQDINPAGWPKFEPKTMEEGKDLEFVAIFEVLPDIELGDLSKVEVEKPVAEVTDKDIDTMIDNLRRQQATMKEVKRKSKNKDVLTIDFKGFIDGEEFEGGAAEGHRLTLGSGQMIPGFEKAIVGGKAGEDLEIEVEFPEDYHNEDLAGKPAKFEIKIHKVEEPQLPELDQEFFKKFGIEAEDEANFREEVKKNMERELKQAVSNKVKNDVVDGLLETTELEIPAALVDQEIDRLRQDAVQRFGGQVDFQQLPKEIFEEQAKRRVKTGLLFQEVVKKNDLKAEPAQVDEKIQEIASTYEQPEEVVAHFTNNPDQKAQIESSVLEDAVVDYVLGQAKVKEKKMKYEEAVQAGQPQR
>NZ_CP014754.1|WP_058090435.1|4296822_4297458_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MTQKPFDGPTMITNAGLVPIVIEQTARGERSFDIYSRLLKERVIFLVGPVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFVKPDVATLCIGQAASMGAFLLSGGTKGKRACLPNSRVMIHQPLGGYQGQATDIEIHTREILKIRHTLNTLLAEHTGQDLETIARDTDRDNFMDPQQAKEYGLIDTILDKRVPNK
>NZ_CP014754.1|WP_058090436.1|4297534_4298818_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MADERNGRGDDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEIQENAQEEASDRLPTPAEIRETLNEYVIGQDRAKVVLSVAVYNHYKRLRYGEGKSDVELGKSNILLIGPTGSGKTLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTTNMLFICGGAFAGLEKVIQERSERSSIGFSATVKSQDDSKNTGDIIRDVETEDLVKFGLIPEFVGRLPVVATLTELDEQALVQILTEPKNALTKQYQKLFDMEGVELDFREDALRAVARKAMERKTGARGLRSIMEATLLDTMYQIPSEHDVSKVVIDASVISGDSEPFKIYASSDHAKAVPED
>NZ_CP014754.1|WP_068351537.1|4299606_4300884_+|group-II-intron-reverse-transcriptase/maturase
MRKYYSLYGQLLSKQRLYEAFRHIKRNKGAAGIDGQSLSGFEANLEVELSCLLLELKEKRYRAQPVRRVAIAKDDGGERLLGIPTVRDRVVQQALRRIIEPIFEPDFHPSSYGYRPGRSGHHAIGKAELFIRRYRRDWVVDMDLSKCFDTLNHDLIIRQFRQRITDGSVLSLLRQFLESGVMVGYHLEETELGSPQGGVISPLIANAYLDAFDQFMKARGHRIVRYADDILILCGSRAGAENALRVAQRYLEEELKLTVNVTKTHIAHSDEGVKFLGVVIYTNYTRIQDKKVVKLKQKLKALTKRNRGIGLAAIIRELNPVLRGFANYFRVANCARVLKQVMSWLRRRLRCIQLKQWKKPSRLHRRLKQLGYQPPFRHIKMQSWRNAASPLASLALPNTYLHNDLKLIDLAKVKTGITVPEFGVS
>NZ_CP014754.1|WP_058089489.1|4301076_4303494_+|endopeptidase-La
MTRISEETVQDYPLLPLRDVVVFPHMVVPLFVGREKSIQALEAAMEGSKEILLVAQKDASTDEPGAVDVFSMGTLATVLQMLRLPDGTVKVLVEGNARASITDISEGDFLSGQAILMEEESLPEREEDVLTKTLMDEFEKYVKLSKKVPSEVSNALTGIQELERLVDTMAAHLEMRIPEKQELLEALDVRKRVDLLLGKLDGEIDLIEVEKRIRGRVKKQMERSQREYYLNEQMKAIQKEMGNLGEGNNDFEELEQKLEEAGLPEEARKKTETELNKLKMMSPMSAEATVVRGYIDWMLAVPWKKRSRVRHDLEKAREILDKDHYGLDEVKKRILEYLAVQSRVKKVKGPVLCLVGPPGVGKTSLGQSIAKATNRKYTRMALGGVRDEAEIRGHRKTYIGALPGKLLQKLSKVGVKNPLFLFDEIDKMGMDHRGDPASALLEVLDPEQNHTFNDHYLEVDYDLSDVMFVCTSNSMDIPPALLDRMEIIRIPGYTEEEKVNIALRYLLPKQIKANGLRKDELKIPEATLRDLIRYYTREAGVRGLEREIAKICRKVVREHVEANDKASVTLSPEMLEDYSGVKKFKYGLAEEKNEIGQVTGLAWTQVGGELLTIECALTPGKGRVVKTGSLGDVMQESIQTALTVVRSRASGLGIADDFHEKHDLHVHVPEGATPKDGPSAGIGMCTALVSALTKIPVRAEVAMTGEITLRGKVLAIGGLKEKLLAAHRGGIKTVIIPDENVRDLKEIPENIKESLEIRPVKWIDEVLDIALAYQPEPRTADSAKEGASSKAGDDAGDAAERINTH
>NZ_CP014754.1|WP_008174603.1|4303731_4304004_+|HU-family-DNA-binding-protein
MNKSELIDAIAESADISKAAAGRALDAMTNSITGALKKGDQVTLIGFGTFSVKERAARTGRNPQTGAEIKIPASKVPGFKAGKALKDAVK
>NZ_CP014754.1|WP_058089490.1|4304150_4306004_+|peptidylprolyl-isomerase
MLQDIRDNAQGTIAKVIIGLLIISLSIWGMDAIVGGFSGEPEVATVNGDSITEREFLRTVQLETQQRLMQMDSPDPSMLDEDQIRRDVLESLIQERVLTLDAQAQGLELSDADIDALITQMPQFQVDGQFNRDRFVATVRNVGMGVGEFRENLRKNYVVNQIRASIAQTGIVASENVAQLLRIQNQTRDFRVLTVSADSLSEQIKVTEEEIQSFYDDNADQFREPEQVHVAYITLSLGALADAIEISEEDLRGFYDERAEEYAREERRAAHILIEDGSDAEATIASIQERLEAGESFAELAEEFSADTVSARDGGDLGYAGRGVYDEAFENALFALEEGEVSGPVETSFGIHLIRLEGVRRSDVPSFESLRGELRDELARSRASERFAEVRAQLADAAYAADDLAGPAAELGLEVREVDGVTREGGAAPFDHAGLVRQLFSDDVLQGGFNTELIDVGDNASVVARVREYLEPRQRELADVRDDIAAMLEARKTRQALEARVDELMAALEAGEDPESLNAGDWQRFENQGRDGANLSRFVVQRAFAMPRPEEGNPSMAKAVGQREAAIILVDAVNEGAVDTDGAEYQQLRQFLAQLEGQREYMAYQQYLRNTAEVDRD
>NZ_CP014754.1|WP_058089863.1|4306075_4306504_-|hypothetical-protein
MKKVLGNLALISVLAMTGCATTGGERDYSQSLYLRGQFAWWDALPEYKVKKVDTGVYRTEIELKADGQPYEFKFGDANWSNGANCGYLSEKDDKEVALNTPVRANCSAVFENFRFTPPESAVYGFYFDVTGETPTVYIKKAN
>NZ_CP014754.1|WP_068351614.1|4306565_4309724_-|pullulanase-type-alpha-1,6-glucosidase
MPDHKRLTGGIVLTLALALTGCNSGSSSDSPANGGNTGADGLLEPGANEALLYYKRPDASYDGWGLHLWNDAGAGCDGLADGVPTDWDTPRRADGISDTYGAYYRIPMREAGDCLYFILHKGDEKDLGGQDHRWHFGALGNRIFTVSGSQLLSSTPIETDGIAIAGASAHWVDRNTLVFRDTGNLPRVELRYDHNAGIAVSDSDTLSGGNVLELTPTTLPEASANKFPHLADWPAYEIIADSETIQSALKGQLVAAAYNSNDELVAATGVQIPGVLDDLFAYTGELGAVVEGSNVNFAVWAPTAQTLKLHVFDDNGTPLPGYPVQMTETNGVWSHSGSRTDLLEMYYQYEVSVYHPRTGEIETTLVSDPYALSLSANGQYAQVVDLGTDYKPSGWDSLTLPARSAPEDVVVYEVHVRDFSATDETVERTHRGKYKAFTAPSDGSVDSVAHLRALAEAGVTHLHLLPSFDIATVNESPNQVVDIQDDFSRLCELSEAAASEFSEYCTSGQTVRQVLEGFDPLTGDAQALYNTFRDLDSFNWGYDPVHFTVPEGSYATDAQGPQRIIEFRELVMAASELGLNVVLDVVYNHTNSSGLADNSVLDKLVPGYYHRQNPETGAVEQSTCCENTASEHAMMEKLMVDSLVTWAQHYKISGFRFDLMGHHMLSNMEKALAAVQAVDPDTYFYGEAWNFGEVANNARGVNAIQTNMAGTGIGSFNDRLRDAVRGGGPFDEGDAIRANQGFANGLFTYPNDRNTGSEDERNRLLQVSDWIRVGIAGSLADYPFETATDELKTAAEIDYNGQAAGYTADPQEIINYVSKHDNQTLWDNNQYKADYYASTQERAQMQVVGLAVPILSQGIPFLHMGSELLRSKSMERDSYDSGDWYNDVDFSFQASAWNRGLPRQDKDGSNWDLITEVITLAGSHADPTPATISYTRDQVLELLRVRKESPLFRLQTAEDIKNRLSFLNTGSQQIPGLIAFSLLDDGTAGLRELDDANNEIVVVINASNTTQTLNHTLDGDFSVRADTSPAQSAAADAGEFLVPGLSVAVFAR
>NZ_CP014754.1|WP_058089492.1|4309948_4311274_-|maltoporin-LamB
MHNKKPLFASKLPLAAAITAAVMATPAIAVDFHGYARAGASTNIGSGGEQTCFGNGASGHYVGRLADECDTYAELSLGDELFSQDGKTFRIDSMLAYSAEPQGNDYQALNGGNNISGIDFANEEVTRNNADPFGGGEIALRQLYVSAKNVVESLPGATLWAGKRFYQRKDIHQMDLFYVNNSGYGAGIENIKAGAGHLSVAYTNADTSDGDGLVQNNKLDVRYAFPVAGGHTLELIGIYAMADLTDQQKDAGIEDENGYFLTAELSSGVMGGFNKFAVQYGADSMGFANAEGSSGGRVDNGNVAGYFESSWRVLNHGVIKLGSNWDLGHSVVYEKAKPHDAGARDGERLSIIARPIYNWSTVMSTAIEIGYSDTDRPWFTESQDLGKVAIAQQWQAGPGYWARPVIRAYAATFFGDEAEAARGGEGIDGDIQIGAQIEAWW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014754_5	5.20\|3532526\|33\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3532526-3532558	33	NZ_CP045368	Marinobacter sp. THAF39 plasmid phiTHAF39, complete sequence	14290-14322	0	1.0
NZ_CP014754_5	5.5\|3531530\|36\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3531530-3531565	36	NZ_CP045368	Marinobacter sp. THAF39 plasmid phiTHAF39, complete sequence	14166-14201	1	0.972
NZ_CP014754_5	5.21\|3532591\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3532591-3532624	34	NZ_CP045368	Marinobacter sp. THAF39 plasmid phiTHAF39, complete sequence	14185-14218	1	0.971
NZ_CP014754_5	5.2\|3531330\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3531330-3531363	34	EU982300	Pseudomonas phage DVM-2008, genomic sequence	9090-9123	8	0.765
NZ_CP014754_5	5.9\|3531796\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3531796-3531829	34	NC_008244	Chelativorans sp. BNC1 plasmid 3, complete sequence	25848-25881	8	0.765
NZ_CP014754_5	5.23\|3532724\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3532724-3532757	34	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1374625-1374658	8	0.765
NZ_CP014754_5	5.23\|3532724\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3532724-3532757	34	MF189178	Arthrobacter phage Shade, complete genome	43306-43339	9	0.735
NZ_CP014754_5	5.23\|3532724\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3532724-3532757	34	NC_041933	Arthrobacter phage Sonny, complete genome	43229-43262	9	0.735
NZ_CP014754_5	5.42\|3533982\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3533982-3534015	34	NC_004982	Vibrio cholerae strain O395P plasmid pTLC, complete sequence	4288-4321	9	0.735
NZ_CP014754_5	5.42\|3533982\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3533982-3534015	34	HM134800	Vibrio phage TLC-Kn1 hypothetical protein gene, complete cds; and hypothetical protein genes, partial cds	945-978	9	0.735
NZ_CP014754_5	5.2\|3531330\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3531330-3531363	34	NZ_CP020371	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence	259494-259527	10	0.706
NZ_CP014754_5	5.9\|3531796\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3531796-3531829	34	NZ_CP022192	Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence	124776-124809	10	0.706
NZ_CP014754_5	5.11\|3531929\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3531929-3531962	34	NZ_CP023400	Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence	19830-19863	10	0.706
NZ_CP014754_5	5.36\|3533585\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3533585-3533618	34	NZ_LR027520	Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence	48854-48887	10	0.706
NZ_CP014754_5	5.9\|3531796\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3531796-3531829	34	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	1621664-1621697	11	0.676
NZ_CP014754_5	5.2\|3531330\|34\|NZ_CP014754\|PILER-CR,CRISPRCasFinder,CRT	3531330-3531363	34	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2771233-2771266	12	0.647

1. spacer 5.20|3532526|33|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045368 (Marinobacter sp. THAF39 plasmid phiTHAF39, complete sequence) position: , mismatch: 0, identity: 1.0

caccatgcgaccgtctctttatcgaccgtccga	CRISPR spacer
caccatgcgaccgtctctttatcgaccgtccga	Protospacer
*********************************

2. spacer 5.5|3531530|36|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045368 (Marinobacter sp. THAF39 plasmid phiTHAF39, complete sequence) position: , mismatch: 1, identity: 0.972

ctcactcagggtgacacgaactacctgatctggggt	CRISPR spacer
ctcactcagggagacacgaactacctgatctggggt	Protospacer
*********** ************************

3. spacer 5.21|3532591|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045368 (Marinobacter sp. THAF39 plasmid phiTHAF39, complete sequence) position: , mismatch: 1, identity: 0.971

gtgtcaccctgagtgaggaaagccgtgagtttgt	CRISPR spacer
gtgtctccctgagtgaggaaagccgtgagtttgt	Protospacer
***** ****************************

4. spacer 5.2|3531330|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to EU982300 (Pseudomonas phage DVM-2008, genomic sequence) position: , mismatch: 8, identity: 0.765

--cgttaccgcctggacatggccggcgcggccaata	CRISPR spacer
gaggtga--gcctggacatggacgtcgcggccaaat	Protospacer
   ** *  ************ ** *********

5. spacer 5.9|3531796|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NC_008244 (Chelativorans sp. BNC1 plasmid 3, complete sequence) position: , mismatch: 8, identity: 0.765

aggccagcgcggacattgccggccgtgccctgga	CRISPR spacer
aggccatcgcggatattgccggccgagacggtgt	Protospacer
****** ******.*********** * *   *

6. spacer 5.23|3532724|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.765

tggtggagacgctggcggaagaag----ctgacgacga	CRISPR spacer
tggtggagacgctgacgggagaagcgacctggcc----	Protospacer
**************.***.*****    ***.*

7. spacer 5.23|3532724|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to MF189178 (Arthrobacter phage Shade, complete genome) position: , mismatch: 9, identity: 0.735

tggtggagacgctggcggaagaagctgacgacga	CRISPR spacer
gagcagggacgctggcggaagacgctcacgacac	Protospacer
 .*..*.*************** *** *****.

8. spacer 5.23|3532724|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NC_041933 (Arthrobacter phage Sonny, complete genome) position: , mismatch: 9, identity: 0.735

tggtggagacgctggcggaagaagctgacgacga	CRISPR spacer
gagcagggccgctggcggaagacgctcacgacgc	Protospacer
 .*..*.* ************* *** ******

9. spacer 5.42|3533982|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NC_004982 (Vibrio cholerae strain O395P plasmid pTLC, complete sequence) position: , mismatch: 9, identity: 0.735

aactcaaactcggcagtccagagcctacgcaaag-------	CRISPR spacer
aacgcaaactcggcattccagagc-------aagaaactgt	Protospacer
*** *********** ********       ***

10. spacer 5.42|3533982|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to HM134800 (Vibrio phage TLC-Kn1 hypothetical protein gene, complete cds; and hypothetical protein genes, partial cds) position: , mismatch: 9, identity: 0.735

aactcaaactcggcagtccagagcctacgcaaag-------	CRISPR spacer
aacgcaaactcggcattccagagc-------aagaaactgt	Protospacer
*** *********** ********       ***

11. spacer 5.2|3531330|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020371 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence) position: , mismatch: 10, identity: 0.706

cgttaccgcctggacatggccggcgcggccaata	CRISPR spacer
gggctgggcctggtcatggcctgcgcggccagtg	Protospacer
 * .   ****** ******* *********.*.

12. spacer 5.9|3531796|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022192 (Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

aggccagcgcggacattgccggccgtgccctgga	CRISPR spacer
gcggcgcttcggaccttgccggccgtgcgctggc	Protospacer
. * *. . ***** ************* ****

13. spacer 5.11|3531929|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023400 (Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence) position: , mismatch: 10, identity: 0.706

aatcaggtttgtctcgaaatctttcattggacgc	CRISPR spacer
cttcaggtttgtttctaaatctttcaatattctt	Protospacer
  **********.** ********** *.  * .

14. spacer 5.36|3533585|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR027520 (Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence) position: , mismatch: 10, identity: 0.706

acggggccatggacgaaaagctggaatacaacaa	CRISPR spacer
acggggccatgcacgacaagctggtggcccagtt	Protospacer
*********** **** ******* .  * *

15. spacer 5.9|3531796|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 11, identity: 0.676

aggccagcgcggacattgccggccgtgccctgga	CRISPR spacer
ctctgagcgcggacgctgccggccgtgccaacgc	Protospacer
   . *********..*************   *

16. spacer 5.2|3531330|34|NZ_CP014754|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

cgttaccgcctggacatggccggcgcggccaata	CRISPR spacer
gacctgggcctggacaaggccggcgtggccaccg	Protospacer
 ...   ********* ********.***** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

654202 : 668682

Acidithiobacillus_phage(25.0%)

transposase,integrase

attL 664994:665009|attR 669033:669048

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068351341.1\|654202_655228_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_058092927.1\|655564_655828_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_058092928.1\|655824_656067_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_058092929.1\|656218_656653_-	hypothetical protein	NA	NA	NA	NA
WP_058092930.1\|656822_657110_-	hypothetical protein	NA	NA	NA	NA
WP_068351341.1\|657230_658256_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_058092921.1\|658647_658881_-	hypothetical protein	NA	NA	NA	NA
WP_058092924.1\|659824_660076_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_058092925.1\|660072_660327_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_058092926.1\|661006_661762_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.3e-68	54.5
WP_058092803.1\|662769_663786_-\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	2.9e-05	39.5
WP_058092802.1\|663782_664772_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.7e-08	23.6
WP_068351350.1\|664768_666031_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
664994:665009	attL	NA	NA	NA	NA
WP_068351353.1\|666905_667310_-	hypothetical protein	NA	NA	NA	NA
WP_058090291.1\|667695_668682_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.3e-58	43.0
669033:669048	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1266697 : 1308045

Brevibacillus_phage(14.29%)

protease,transposase,integrase

attL 1274851:1274910|attR 1315333:1317422

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068351393.1\|1266697_1268023_+\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	4.2e-12	23.7
WP_156509979.1\|1268185_1268323_+	hypothetical protein	NA	NA	NA	NA
WP_058092638.1\|1268326_1268965_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_058092639.1\|1269157_1269826_+	glutathione S-transferase	NA	NA	NA	NA
WP_058092640.1\|1269877_1270333_-	GatB/YqeY domain-containing protein	A0A0K2FLI9	Brevibacillus_phage	1.7e-05	29.5
WP_058092641.1\|1270434_1271103_+	thiaminase II	NA	NA	NA	NA
WP_058092642.1\|1271114_1271549_-	DUF4399 domain-containing protein	NA	NA	NA	NA
WP_156510052.1\|1271655_1272186_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_058092644.1\|1272539_1273082_+	DUF2845 domain-containing protein	NA	NA	NA	NA
WP_058092926.1\|1273179_1273935_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.3e-68	54.5
1274851:1274910	attL	NA	NA	NA	NA
WP_058092803.1\|1274942_1275959_-\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	2.9e-05	39.5
WP_058092802.1\|1275955_1276945_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.7e-08	23.6
WP_068351350.1\|1276941_1278204_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_058092934.1\|1279264_1279876_-	hypothetical protein	NA	NA	NA	NA
WP_058092933.1\|1280223_1280430_+	cold shock domain-containing protein	A0A1X9IGI9	Lactococcus_phage	2.6e-14	58.3
WP_068351396.1\|1280527_1281805_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.8e-32	31.2
WP_058092318.1\|1282865_1283792_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2P1EL10	Moumouvirus	5.0e-20	52.9
WP_058092317.1\|1283895_1284600_-	class I SAM-dependent methyltransferase	A0A1X9I669	Streptococcus_phage	4.5e-05	27.3
WP_058092316.1\|1284690_1285140_-	hypothetical protein	NA	NA	NA	NA
WP_058092315.1\|1285220_1285961_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_082888440.1\|1286001_1287831_-	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	3.5e-94	40.8
WP_156509980.1\|1287972_1288374_+	hypothetical protein	NA	NA	NA	NA
WP_058092314.1\|1288445_1289870_+	TolC family protein	NA	NA	NA	NA
WP_058092313.1\|1289879_1291169_+	copper oxidase	NA	NA	NA	NA
WP_058092312.1\|1291192_1291618_+	copper resistance protein CopC	NA	NA	NA	NA
WP_058092311.1\|1291623_1292505_+	hypothetical protein	NA	NA	NA	NA
WP_058092310.1\|1292737_1294750_+	S8/S53 family peptidase	NA	NA	NA	NA
WP_058092309.1\|1294852_1295338_-	hypothetical protein	NA	NA	NA	NA
WP_058092308.1\|1295346_1295727_-	hypothetical protein	NA	NA	NA	NA
WP_058092307.1\|1295960_1296722_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_058092306.1\|1296749_1297391_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_058092305.1\|1297450_1297894_+	YHS domain-containing protein	NA	NA	NA	NA
WP_058092304.1\|1297907_1298534_+	DUF938 domain-containing protein	NA	NA	NA	NA
WP_058092303.1\|1298581_1298962_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_058092302.1\|1299032_1299602_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_058092301.1\|1299700_1300240_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_058092300.1\|1300412_1300832_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_058092299.1\|1300813_1301227_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_058092298.1\|1301316_1301955_-	hypothetical protein	NA	NA	NA	NA
WP_058092297.1\|1302091_1302700_+	hypothetical protein	NA	NA	NA	NA
WP_058092295.1\|1303116_1304607_-	type VI secretion system PAAR protein	A0A2H4J6N0	uncultured_Caudovirales_phage	3.5e-47	36.8
WP_058092319.1\|1304830_1305376_+	nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA
WP_058092292.1\|1306466_1306907_-	thioredoxin TrxC	A0A146JH34	Tokyovirus	1.5e-11	40.6
WP_058092291.1\|1306932_1307148_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	5.5e-07	50.0
WP_058092290.1\|1307144_1307435_+	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	2.2e-11	38.7
WP_058092289.1\|1307517_1308045_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
1315333:1317422	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1871061 : 1940995

Klosneuvirus(15.38%)

transposase,integrase,holin

attL 1931300:1931315|attR 1948921:1948936

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058092798.1\|1871061_1872684_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.7e-45	31.4
WP_156509991.1\|1872709_1873003_-	hypothetical protein	NA	NA	NA	NA
WP_058091265.1\|1873431_1874661_-	DGQHR domain-containing protein	NA	NA	NA	NA
WP_058091264.1\|1874660_1875161_-	nucleotide excision repair endonuclease	NA	NA	NA	NA
WP_082888462.1\|1875242_1880360_-	DNA phosphorothioation-dependent restriction protein DptH	NA	NA	NA	NA
WP_058091262.1\|1880331_1881666_-	DNA phosphorothioation-dependent restriction protein DptG	NA	NA	NA	NA
WP_058091261.1\|1881662_1883258_-	DNA phosphorothioation-dependent restriction protein DptF	NA	NA	NA	NA
WP_022993304.1\|1883529_1883766_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_058091260.1\|1883918_1884158_+	hypothetical protein	NA	NA	NA	NA
WP_058091259.1\|1884150_1885359_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	3.9e-41	32.6
WP_035232409.1\|1885348_1885642_+	hypothetical protein	NA	NA	NA	NA
WP_156509992.1\|1885945_1889218_-	hypothetical protein	NA	NA	NA	NA
WP_058091257.1\|1889300_1891664_-	hypothetical protein	NA	NA	NA	NA
WP_035232415.1\|1891663_1892911_-	hypothetical protein	NA	NA	NA	NA
WP_058091256.1\|1893455_1894061_+	exonuclease domain-containing protein	A0A2K9L598	Tupanvirus	8.0e-11	27.0
WP_058091255.1\|1894057_1894690_+	metallophosphoesterase	A0A1V0SDK2	Indivirus	6.8e-29	35.3
WP_058091254.1\|1894718_1894958_+	hypothetical protein	NA	NA	NA	NA
WP_082780611.1\|1894962_1895433_+	DNA polymerase	NA	NA	NA	NA
WP_058091253.1\|1895472_1896174_-	hypothetical protein	NA	NA	NA	NA
WP_058091252.1\|1896201_1896999_-	hypothetical protein	NA	NA	NA	NA
WP_058091251.1\|1897092_1897470_-	hypothetical protein	NA	NA	NA	NA
WP_022990735.1\|1897469_1897709_-	hypothetical protein	NA	NA	NA	NA
WP_058091249.1\|1898287_1899235_+	calcium/sodium antiporter	NA	NA	NA	NA
WP_058091248.1\|1900337_1902860_+	protein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	3.8e-38	38.4
WP_081496573.1\|1903028_1903295_-	EAL domain-containing protein	NA	NA	NA	NA
WP_041654924.1\|1903428_1904589_-	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA
WP_058091247.1\|1904621_1907240_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_014422298.1\|1907468_1908686_+	alkane 1-monooxygenase	A0A1V0SBK9	Catovirus	3.6e-42	33.4
WP_011783984.1\|1908823_1909342_+	rubredoxin	NA	NA	NA	NA
WP_058091245.1\|1909393_1910848_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_058091244.1\|1910875_1912474_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	4.8e-55	30.9
WP_023008030.1\|1912562_1914197_+	long-chain-fatty-acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.8e-25	27.8
WP_058091243.1\|1914281_1914953_+	OmpW family protein	NA	NA	NA	NA
WP_008170306.1\|1915851_1916877_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_041654915.1\|1917163_1918414_-	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA
WP_058091242.1\|1918502_1920140_-	FAD-dependent oxidoreductase	A0A1V0SI18	Klosneuvirus	4.3e-59	29.8
WP_058091241.1\|1920145_1921570_-	cytochrome P450	NA	NA	NA	NA
WP_008170311.1\|1921584_1921905_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_014422290.1\|1922034_1923102_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_014422289.1\|1923147_1923762_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014422288.1\|1924020_1924506_+	PaaI family thioesterase	NA	NA	NA	NA
WP_014422287.1\|1924502_1924994_+	PaaI family thioesterase	NA	NA	NA	NA
WP_014422286.1\|1924983_1925886_+	alpha/beta hydrolase	A0A223FN69	NY_014_poxvirus	6.1e-07	32.1
WP_058091240.1\|1925923_1926976_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_058091239.1\|1926972_1930011_+	efflux RND transporter permease subunit	S5VL66	Leptospira_phage	8.1e-11	18.9
WP_058091238.1\|1930292_1931378_-	aldo/keto reductase	NA	NA	NA	NA
1931300:1931315	attL	NA	NA	NA	NA
WP_008170335.1\|1931462_1932269_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_008170337.1\|1932347_1932914_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_008170339.1\|1932957_1933626_-	cupin	NA	NA	NA	NA
WP_041654905.1\|1933689_1934310_-	glutathione S-transferase	NA	NA	NA	NA
WP_058091237.1\|1934626_1935625_-	lipid A deacylase LpxR family protein	NA	NA	NA	NA
WP_156509993.1\|1936468_1936900_-	hypothetical protein	NA	NA	NA	NA
WP_058092926.1\|1936929_1937685_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.3e-68	54.5
WP_068351350.1\|1938746_1940009_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_058092802.1\|1940005_1940995_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.7e-08	23.6
1948921:1948936	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2553635 : 2584904

Catovirus(33.33%)

plate,transposase,integrase

attL 2546175:2546189|attR 2557717:2557731

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2546175:2546189	attL	NA	NA	NA	NA
WP_058090751.1\|2553635_2553947_-\|integrase	integrase	NA	NA	NA	NA
WP_058090750.1\|2554089_2554350_-	acyl-CoA-binding protein	A0A1V0S9E7	Catovirus	1.9e-09	37.8
WP_058090748.1\|2554621_2555119_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_058090747.1\|2555180_2556662_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_058090746.1\|2556665_2557103_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_058090745.1\|2557436_2559209_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
2557717:2557731	attR	NA	NA	NA	NA
WP_058090744.1\|2559172_2560189_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_058090743.1\|2560206_2561541_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_058090742.1\|2561537_2562071_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_058090741.1\|2562070_2563405_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_058090740.1\|2563408_2564230_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_082888481.1\|2564195_2566874_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	4.7e-95	33.5
WP_058090738.1\|2567130_2568696_+	AAA domain-containing protein	NA	NA	NA	NA
WP_058090737.1\|2568692_2569334_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_058090736.1\|2569344_2570787_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_058090735.1\|2570811_2574405_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_068351499.1\|2574507_2576631_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.0e-32	27.1
WP_058090733.1\|2576627_2577188_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_058090732.1\|2577227_2581346_+	hypothetical protein	NA	NA	NA	NA
WP_156510005.1\|2581338_2582496_+	hypothetical protein	NA	NA	NA	NA
WP_058090730.1\|2582562_2583108_+	hypothetical protein	NA	NA	NA	NA
WP_058090729.1\|2583230_2583473_+	hypothetical protein	NA	NA	NA	NA
WP_058092932.1\|2583602_2584904_+\|transposase	IS1380 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2836374 : 2945995

Leptospira_phage(14.29%)

transposase,integrase

attL 2851545:2851561|attR 2953837:2953853

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068351502.1\|2836374_2837700_-\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	3.8e-13	24.1
WP_058092604.1\|2837827_2838787_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_058092603.1\|2838845_2841941_-	MMPL family transporter	S5VTK5	Leptospira_phage	2.2e-59	21.4
WP_058092602.1\|2841940_2843038_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_058092601.1\|2843370_2843871_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_058092600.1\|2843871_2844657_-	secretin	NA	NA	NA	NA
WP_058092599.1\|2845020_2846073_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	3.0e-82	50.0
WP_058092598.1\|2846017_2846689_-	LysE family transporter	NA	NA	NA	NA
WP_058092597.1\|2846852_2848292_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
WP_058092596.1\|2848343_2848619_-	DUF2061 domain-containing protein	NA	NA	NA	NA
WP_058092595.1\|2848849_2849323_+	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	8.7e-21	34.3
WP_068351672.1\|2849432_2850647_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.8e-49	48.9
WP_068351505.1\|2850699_2851662_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.7e-43	34.4
2851545:2851561	attL	NA	NA	NA	NA
WP_058092647.1\|2851728_2852526_-	hypothetical protein	NA	NA	NA	NA
WP_058092646.1\|2852884_2854063_-	hypothetical protein	NA	NA	NA	NA
WP_058092645.1\|2854161_2854464_-	TonB-dependent receptor	NA	NA	NA	NA
WP_068351508.1\|2854567_2855653_-	ATPase	NA	NA	NA	NA
WP_058092797.1\|2855981_2857202_+	TolC family protein	NA	NA	NA	NA
WP_068351511.1\|2857223_2858489_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_068351513.1\|2858503_2861701_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	5.1e-64	22.1
WP_058092623.1\|2861754_2863077_-	sensor histidine kinase	NA	NA	NA	NA
WP_058092622.1\|2863102_2863774_-	response regulator transcription factor	NA	NA	NA	NA
WP_058092932.1\|2866076_2867378_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_068351516.1\|2867457_2868660_+	TolC family protein	NA	NA	NA	NA
WP_058092796.1\|2868738_2869479_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.6e-56	48.9
WP_058092803.1\|2870481_2871498_-\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	2.9e-05	39.5
WP_058092802.1\|2871494_2872484_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.7e-08	23.6
WP_068351350.1\|2872480_2873743_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_058091440.1\|2875429_2877313_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_082888489.1\|2877522_2878446_+	transporter	NA	NA	NA	NA
WP_082040488.1\|2878485_2880597_+	PQQ-dependent dehydrogenase, methanol/ethanol family	NA	NA	NA	NA
WP_058091439.1\|2880611_2882126_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_052479352.1\|2882380_2883157_+	response regulator transcription factor	NA	NA	NA	NA
WP_058091438.1\|2883640_2885821_-	AAA family ATPase	A0A2I2L5Q3	Orpheovirus	2.1e-21	26.3
WP_058091437.1\|2885817_2886252_-	hypothetical protein	NA	NA	NA	NA
WP_058091436.1\|2886254_2886878_-	hypothetical protein	NA	NA	NA	NA
WP_156510009.1\|2886877_2887045_-	hypothetical protein	NA	NA	NA	NA
WP_058091435.1\|2887041_2888868_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_058091434.1\|2888864_2890286_-	hypothetical protein	NA	NA	NA	NA
WP_156510010.1\|2891041_2892229_-\|integrase	tyrosine-type recombinase/integrase	S5M9V8	Brevibacillus_phage	4.3e-08	25.7
WP_156510011.1\|2893233_2893560_+	hypothetical protein	NA	NA	NA	NA
WP_053114414.1\|2895627_2896773_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_058091432.1\|2896811_2897600_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_053114417.1\|2897639_2898416_+	SDR family NAD(P)-dependent oxidoreductase	A0A0M4JSW6	Mollivirus	1.5e-06	23.8
WP_082888490.1\|2898505_2899570_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_058091430.1\|2899650_2901213_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	3.2e-27	26.4
WP_058091429.1\|2901295_2902534_+	thiolase family protein	NA	NA	NA	NA
WP_156510012.1\|2902749_2903817_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_082888491.1\|2903859_2906658_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_058091427.1\|2906797_2907931_+	CoA transferase	NA	NA	NA	NA
WP_082888548.1\|2908340_2908427_-	hypothetical protein	NA	NA	NA	NA
WP_058091441.1\|2909283_2910090_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.1e-12	25.4
WP_058091425.1\|2910086_2910809_+	ABC transporter ATP-binding protein	A0A2H4UU96	Bodo_saltans_virus	3.5e-05	21.7
WP_058091424.1\|2910909_2912127_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_058091423.1\|2912231_2913119_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_058091422.1\|2913121_2914117_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_058091421.1\|2914531_2915680_+	hypothetical protein	NA	NA	NA	NA
WP_058091420.1\|2916217_2917402_+	lipid-transfer protein	NA	NA	NA	NA
WP_082888492.1\|2917485_2918211_+	hypothetical protein	NA	NA	NA	NA
WP_156510013.1\|2918619_2918766_-	hypothetical protein	NA	NA	NA	NA
WP_058091419.1\|2918957_2919290_+	YnfA family protein	A0A218MNG8	uncultured_virus	1.0e-28	57.5
WP_058091418.1\|2919587_2920145_-	manganese efflux pump	NA	NA	NA	NA
WP_082888493.1\|2921250_2921811_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_058091415.1\|2923685_2924015_-	hypothetical protein	NA	NA	NA	NA
WP_068351519.1\|2924034_2924889_-	hypothetical protein	NA	NA	NA	NA
WP_068351522.1\|2924885_2925128_-	hypothetical protein	NA	NA	NA	NA
WP_068351525.1\|2925392_2925998_+	exonuclease domain-containing protein	NA	NA	NA	NA
WP_068351528.1\|2925994_2926627_+	metallophosphoesterase	A0A1V0SDK2	Indivirus	8.9e-29	34.4
WP_156510014.1\|2926656_2926965_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_058092363.1\|2926976_2927216_+	hypothetical protein	NA	NA	NA	NA
WP_082888494.1\|2927220_2927688_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_058092364.1\|2928039_2928882_+	hypothetical protein	NA	NA	NA	NA
WP_058092366.1\|2929815_2932179_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_058092367.1\|2932159_2935426_+	hypothetical protein	NA	NA	NA	NA
WP_058092368.1\|2935678_2935981_-	hypothetical protein	NA	NA	NA	NA
WP_058092369.1\|2935973_2937188_-\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	3.6e-42	32.4
WP_035232406.1\|2937180_2937417_-	hypothetical protein	NA	NA	NA	NA
WP_058092370.1\|2937568_2937775_+	helix-turn-helix transcriptional regulator	S5MTW4	Brevibacillus_phage	1.6e-08	45.9
WP_058092371.1\|2937804_2938719_+	restriction endonuclease	NA	NA	NA	NA
WP_058092373.1\|2939103_2944623_+	DUF4011 domain-containing protein	NA	NA	NA	NA
WP_058092935.1\|2944741_2945995_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.1e-97	47.4
2953837:2953853	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3472203 : 3539909

Pandoravirus(13.33%)

tRNA,protease,transposase,integrase

attL 3492426:3492441|attR 3549915:3549930

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082888505.1\|3472203_3472740_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.7e-25	40.8
WP_058092249.1\|3472655_3472964_-\|transposase	IS3 family transposase	A9YX41	Burkholderia_phage	4.2e-08	34.8
WP_058092248.1\|3473049_3473463_-	hypothetical protein	NA	NA	NA	NA
WP_058092246.1\|3474584_3476159_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_058092245.1\|3476158_3478516_+	DUF2309 domain-containing protein	NA	NA	NA	NA
WP_076657314.1\|3478538_3479450_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_058092244.1\|3479536_3479755_-	hypothetical protein	NA	NA	NA	NA
WP_058092242.1\|3480277_3481267_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	1.6e-40	36.6
WP_058092241.1\|3481263_3481461_-	hypothetical protein	NA	NA	NA	NA
WP_058092240.1\|3482076_3484536_+	ribonuclease R	Q0GXV6	Lactococcus_phage	8.7e-72	32.9
WP_058092239.1\|3484561_3485299_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_058092238.1\|3485542_3485956_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_008937282.1\|3485980_3486211_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_058092237.1\|3486236_3487103_+	hypothetical protein	NA	NA	NA	NA
WP_058092236.1\|3487123_3487570_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_058092235.1\|3487717_3489124_+	replicative DNA helicase	O80281	Escherichia_phage	1.6e-150	60.9
WP_058092234.1\|3489123_3490197_+	alanine racemase	NA	NA	NA	NA
WP_058092233.1\|3490227_3490584_-	hypothetical protein	NA	NA	NA	NA
WP_058092232.1\|3490740_3491622_+	sugar nucleotide-binding protein	NA	NA	NA	NA
WP_058092256.1\|3491649_3492402_-	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA
3492426:3492441	attL	NA	NA	NA	NA
WP_058092231.1\|3492677_3493601_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_058092255.1\|3493840_3494284_+	hypothetical protein	NA	NA	NA	NA
WP_068351396.1\|3495063_3496341_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.8e-32	31.2
WP_058091893.1\|3496419_3498897_-	RND family transporter	NA	NA	NA	NA
WP_058091892.1\|3498945_3500166_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.7e-21	29.3
WP_058091891.1\|3500173_3501220_-	lipoyl synthase	NA	NA	NA	NA
WP_058091890.1\|3501350_3502628_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0B5JD48	Pandoravirus	3.3e-14	27.2
WP_058091889.1\|3502729_3503941_-	serine hydrolase	NA	NA	NA	NA
WP_058091888.1\|3504210_3505302_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_058091887.1\|3505386_3505977_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_058091895.1\|3505998_3506637_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_011785828.1\|3506802_3507753_-	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	4.6e-45	39.9
WP_058091886.1\|3507902_3508766_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_152437429.1\|3508770_3509400_-	outer membrane lipoprotein LolB	NA	NA	NA	NA
WP_058091884.1\|3509396_3511148_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_058091883.1\|3511382_3512672_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_058091882.1\|3512668_3513757_+	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	2.2e-06	41.8
WP_058091881.1\|3513746_3514601_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_058091880.1\|3514612_3515359_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_058091879.1\|3515502_3516894_-	deoxyribodipyrimidine photo-lyase	A0A1V0SGL1	Hokovirus	6.1e-54	31.2
WP_058091878.1\|3517033_3517846_+	hypothetical protein	NA	NA	NA	NA
WP_058091877.1\|3517868_3518756_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_058091876.1\|3518736_3519228_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_058091875.1\|3519230_3520136_+	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.3e-38	35.3
WP_058091874.1\|3520142_3521210_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA
WP_058091873.1\|3521224_3521650_+	YjbQ family protein	NA	NA	NA	NA
WP_058091872.1\|3521729_3522689_+	YafY family transcriptional regulator	NA	NA	NA	NA
WP_058091871.1\|3522775_3525259_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_058091870.1\|3525274_3525976_+	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_058091869.1\|3525972_3527988_+	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA
WP_058091868.1\|3527984_3528827_+	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA
WP_058091867.1\|3528861_3529086_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
WP_058091894.1\|3529104_3529731_+	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_058091866.1\|3529727_3530747_+	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_022987784.1\|3530759_3531053_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_058092926.1\|3534830_3535586_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.3e-68	54.5
WP_068351350.1\|3536647_3537910_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_058092802.1\|3537906_3538896_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.7e-08	23.6
WP_058092803.1\|3538892_3539909_+\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	2.9e-05	39.5
3549915:3549930	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4019977 : 4083363

uncultured_virus(14.29%)

protease,transposase,integrase

attL 4032829:4032846|attR 4074259:4074276

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058092339.1\|4019977_4021192_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.8e-49	48.9
WP_156471739.1\|4021330_4022493_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.7e-89	54.3
WP_061331783.1\|4022461_4022965_-	hypothetical protein	NA	NA	NA	NA
WP_156471740.1\|4023295_4024258_-	hypothetical protein	NA	NA	NA	NA
WP_082780533.1\|4024263_4024641_-	hypothetical protein	NA	NA	NA	NA
WP_068351594.1\|4024700_4025555_-	hypothetical protein	NA	NA	NA	NA
WP_068351522.1\|4025551_4025794_-	hypothetical protein	NA	NA	NA	NA
WP_068351525.1\|4026058_4026664_+	exonuclease domain-containing protein	NA	NA	NA	NA
WP_068351597.1\|4026660_4027293_+	metallophosphoesterase	A0A1V0SDK2	Indivirus	9.8e-28	33.5
WP_058091375.1\|4027323_4027563_+	hypothetical protein	NA	NA	NA	NA
WP_082888517.1\|4027567_4028035_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_058091376.1\|4028194_4028446_-	hypothetical protein	NA	NA	NA	NA
WP_058091377.1\|4028710_4029571_+	hypothetical protein	NA	NA	NA	NA
WP_058091378.1\|4029548_4035074_-\|integrase	site-specific integrase	NA	NA	NA	NA
4032829:4032846	attL	NA	NA	NA	NA
WP_058091379.1\|4035405_4035663_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_008170356.1\|4035791_4036025_+	hypothetical protein	NA	NA	NA	NA
WP_058091380.1\|4036017_4037241_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	2.4e-38	32.2
WP_058091381.1\|4037227_4038181_+	HD domain-containing protein	NA	NA	NA	NA
WP_058091382.1\|4038173_4038881_+	hypothetical protein	NA	NA	NA	NA
WP_058091383.1\|4039059_4040205_-	hypothetical protein	NA	NA	NA	NA
WP_058091384.1\|4040188_4043512_-	AAA family ATPase	NA	NA	NA	NA
WP_082888518.1\|4043508_4044249_-	DUF4194 domain-containing protein	NA	NA	NA	NA
WP_058091385.1\|4044254_4045751_-	DUF3375 domain-containing protein	NA	NA	NA	NA
WP_082888519.1\|4045874_4046156_-	diguanylate cyclase	NA	NA	NA	NA
WP_058091387.1\|4046110_4047052_-	diguanylate cyclase	NA	NA	NA	NA
WP_058091388.1\|4047170_4047839_+	DUF159 family protein	A0A2D1GMM4	Marinobacter_phage	5.4e-93	69.2
WP_058091389.1\|4047920_4048922_+	WYL domain-containing transcriptional regulator	NA	NA	NA	NA
WP_082888520.1\|4049067_4049652_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_076657271.1\|4049663_4050854_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_156510037.1\|4050884_4051394_+	hypothetical protein	NA	NA	NA	NA
WP_058091392.1\|4051509_4052121_+	DUF1819 family protein	NA	NA	NA	NA
WP_058091393.1\|4052161_4052743_+	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_058091394.1\|4052780_4056446_+	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_058091395.1\|4056550_4058053_+	Fic family protein	NA	NA	NA	NA
WP_058091396.1\|4058072_4059773_+	AAA family ATPase	NA	NA	NA	NA
WP_058091397.1\|4059781_4063453_+	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
WP_058091398.1\|4063573_4064392_+	abortive infection family protein	NA	NA	NA	NA
WP_058091399.1\|4064452_4065004_+	hypothetical protein	NA	NA	NA	NA
WP_058091400.1\|4065050_4065767_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_058091401.1\|4065826_4066942_+	AAA family ATPase	NA	NA	NA	NA
WP_058091402.1\|4066935_4067511_+	DUF4276 family protein	NA	NA	NA	NA
WP_156510038.1\|4067822_4068131_+	hypothetical protein	NA	NA	NA	NA
WP_058091403.1\|4068155_4069115_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_058091404.1\|4069174_4070779_+	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	9.4e-75	64.8
WP_058091405.1\|4070906_4071107_+	addiction module protein	NA	NA	NA	NA
WP_058091406.1\|4071106_4071403_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_058091407.1\|4071477_4074099_+	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA
WP_058091408.1\|4074109_4076143_+\|protease	protease Lon-related BREX system protein BrxL	NA	NA	NA	NA
4074259:4074276	attR	NA	NA	NA	NA
WP_058091409.1\|4076120_4078151_-	hypothetical protein	NA	NA	NA	NA
WP_058091410.1\|4078147_4081702_-	hypothetical protein	NA	NA	NA	NA
WP_058092935.1\|4082109_4083363_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.1e-97	47.4

DBSCAN-SWA_8

4415065 : 4427191

Klosneuvirus(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058089579.1\|4415065_4416445_-	exodeoxyribonuclease VII large subunit	A0A2P1EMK6	Moumouvirus	2.9e-32	38.3
WP_058089580.1\|4416635_4418099_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.0e-91	40.6
WP_058089581.1\|4418164_4419742_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.6e-18	34.3
WP_058089582.1\|4419809_4420841_-	zinc-dependent alcohol dehydrogenase family protein	E3SJ82	Synechococcus_phage	2.6e-17	26.1
WP_058089583.1\|4421113_4421617_+\|tRNA	tRNA adenosine(34) deaminase TadA	A0A0B5J096	Pandoravirus	1.7e-06	42.3
WP_058089584.1\|4421623_4422613_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.6e-53	37.5
WP_058089585.1\|4422646_4423993_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.9e-77	36.7
WP_058089586.1\|4424008_4424419_+	HIT family protein	NA	NA	NA	NA
WP_058089587.1\|4424431_4425058_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA
WP_058089588.1\|4425391_4427191_+\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	5.7e-12	25.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014754

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection