CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013067	Aeromonas schubertii strain WL1483 chromosome, complete genome	5 crisprs	cas3,csa3,DinG,RT,DEDDh,WYL	0	0	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013067_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013067_1

95824-96038

Orphan

Consensus_repeat	Method
GCTACGCCCTTGTCAAAAAGGTGGGTGTCCCAGAATCT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP013067_1

>merge|NZ_CP013067|1|95824-96038|CRISPRCasFinder
GCTACGCCCTTGTCAAAAAGGTGGGTGTCCCAGAATCTGTTGGGCGATGGTCATGGCAAGTTCCTCGGCAGTTAGGCCTCAAGTCCAGCAGAGCGCTACGCCCCTGTCAAAAAGGTGGGTGTCCCAGAATCTTTGTTCTACAAGTGCCTTGGGTGGCGCACTAGCCATCAGTCACCCACTATTCGATGCTCAAAATGGTGGGTGTCCCAGAGTTT

>NZ_CP013067|1|1|95824-96038|CRISPRCasFinder
GCTACGCCCTTGTCAAAAAGGTGGGTGTCCCAGAATCT	GTTGGGCGATGGTCATGGCAAGTTCCTCGGCAGTTAGGCCTCAAGTCCAGCAGAGC
GCTACGCCCCTGTCAAAAAGGTGGGTGTCCCAGAATCT	TTGTTCTACAAGTGCCTTGGGTGGCGCACTAGCCATCAGTCACCC
ACTATTCGATGCTCAAAATGGTGGGTGTCCCAGAGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013067.1\|WP_060583326.1\|94630_95578_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_158453510.1\|87030_87933_-\|DUF5610-domain-containg-protein	unknown	unknown	gnl\|CDD\|375859
NZ_CP013067.1\|WP_060583342.1\|110173_111337_+\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|131135
NZ_CP013067.1\|WP_050666320.1\|104416_105388_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270286
NZ_CP013067.1\|WP_060583329.1\|98791_100861_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP013067.1\|WP_060583314.1\|86438_86966_-\|cobalamin-adenosyltransferase	unknown	unknown	gnl\|CDD\|213544
NZ_CP013067.1\|WP_050666323.1\|109690_110014_-\|met-regulon-transcriptional-regulator-MetJ	unknown	unknown	gnl\|CDD\|179982
NZ_CP013067.1\|WP_060583320.1\|90388_91597_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|223425
NZ_CP013067.1\|WP_060583260.1\|97578_98619_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP013067.1\|WP_060583332.1\|105470_108029_+\|TRAP-transporter-permease	unknown	unknown	gnl\|CDD\|273983
NZ_CP013067.1\|WP_060588187.1\|101887_102496_+\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NZ_CP013067.1\|WP_050666318.1\|100870_101794_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP013067.1\|WP_082634733.1\|91603_92293_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185157
NZ_CP013067.1\|WP_060583316.1\|88645_88909_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_162491591.1\|89064_90159_+\|tRNA-(uridine(54)-C5)-methyltransferase-TrmA	unknown	unknown	gnl\|CDD\|235332
NZ_CP013067.1\|WP_060583334.1\|108375_109632_+\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NZ_CP013067.1\|WP_060583321.1\|92381_92759_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_144431307.1\|97212_97497_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060583324.1\|92934_94149_+\|transposase	unknown	unknown	gnl\|CDD\|273293
NZ_CP013067.1\|WP_060583312.1\|85377_86382_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|236739

Protein	Function_ID	Function_description	E-value
NZ_CP013067.1\|WP_158453510.1\|87030_87933_-\|DUF5610-domain-containg-protein	gnl\|CDD\|375859	pfam18433, DUF5610, Domain of unknown function (DUF5610). This is a domain of unknown function found in bacterial proteins.	1.51618e-26
NZ_CP013067.1\|WP_060583342.1\|110173_111337_+\|cystathionine-gamma-synthase	gnl\|CDD\|131135	TIGR02080, Cystathionine_gamma-synthase, O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP013067.1\|WP_050666320.1\|104416_105388_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270286	cd13568, PBP2_TAXI_TRAP_like_3, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This subgroup includes uncharacterized periplasmic binding proteins that are related to Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family. TRAP transporters are comprised of an SBP (substrate-binding protein) and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function.	7.01554e-144
NZ_CP013067.1\|WP_060583329.1\|98791_100861_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP013067.1\|WP_060583314.1\|86438_86966_-\|cobalamin-adenosyltransferase	gnl\|CDD\|213544	TIGR00636, PduO_Nterm, ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	1.44923e-16
NZ_CP013067.1\|WP_060583320.1\|90388_91597_+\|4Fe-4S-binding-protein	gnl\|CDD\|223425	COG0348, NapH, Polyferredoxin [Energy production and conversion].	3.45464e-22
NZ_CP013067.1\|WP_060583260.1\|97578_98619_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.1127e-19
NZ_CP013067.1\|WP_060583332.1\|105470_108029_+\|TRAP-transporter-permease	gnl\|CDD\|273983	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate].	4.12238e-111
NZ_CP013067.1\|WP_060583334.1\|108375_109632_+\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	1.43784e-135
NZ_CP013067.1\|WP_050666318.1\|100870_101794_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP013067.1\|WP_082634733.1\|91603_92293_-\|hypothetical-protein	gnl\|CDD\|185157	PRK15245, PRK15245, type III secretion system effector phosphothreonine lyase.	5.73617e-83
NZ_CP013067.1\|WP_050666323.1\|109690_110014_-\|met-regulon-transcriptional-regulator-MetJ	gnl\|CDD\|179982	PRK05264, PRK05264, met regulon transcriptional regulator MetJ.	8.81241e-73
NZ_CP013067.1\|WP_162491591.1\|89064_90159_+\|tRNA-(uridine(54)-C5)-methyltransferase-TrmA	gnl\|CDD\|235332	PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated.	0
NZ_CP013067.1\|WP_060588187.1\|101887_102496_+\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	7.94295e-121
NZ_CP013067.1\|WP_060583324.1\|92934_94149_+\|transposase	gnl\|CDD\|273293	TIGR00837, Tyrosine-specific_transport_protein, aromatic amino acid transport protein. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- tyrosine/tryptophan subfamily (TC 2.A.42.1) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli. [Transport and binding proteins, Amino acids, peptides and amines].	1.94769e-137
NZ_CP013067.1\|WP_060583312.1\|85377_86382_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	4.32408e-155

>NZ_CP013067.1|WP_060583326.1|94630_95578_-|hypothetical-protein
MTIARSRQISLQDTPYYHVVSRCVRRAFLCGEDAHSGQSYEHRRQWVVDRLGQLSRLFAIGICAYAVMSNHYHLVLKVDAEQAQGWSEREVAERWAGLFQWPLLVRRWYQGDALIEPELSVVQGLIEEWRGRLYSISWFVRLLNEGLARQANQEDSCKGHFWEGRFKSQALLTESALLACMAYVELNPIRAKLADRPEESDYTSISQRLGRAQTTELPPLLLPFAKQGEPESLPYTFSDYLALVDWTGRAIRDDRRGHIPEALSPILQRLQLDTEDWLKQVKLFKRSGIRAIGHGVARERYAHHCGQRRCHQPVL
>NZ_CP013067.1|WP_060583324.1|92934_94149_+|transposase
MEQKPSVVGGACIIASVCVGAGMLGLPSAGAGAWTLWSTLAIVLTMVVMTVSGWMLLESYRGYPLRVSFDTVTRDLLGEKVNALNNLSVYFVGGILLYAYITSSGLIIQEMTGLGSHVASVLFTLAFSALVWHSTRAVDRISVLLVILMGLSFAFGISGLSMKISPDLLFDRMSEHASYAPYALVMLPVALTSFGYHHSVSSMRAYYGEERRASRAILGGTAIALTFYTIWLLSVFGNLPRSEFGPVIEQGGNVDALLKALGSVIESKAVASALNAFSMAAILSSFIGVGLGVFDYLADLFKFDNSRIGRSKSWAVTFLPPLVLSLLFPFGFLVAIGYAGAVATLWTCIIPPLLVWKVRASRWDETGFRAPGGMAMIVLVILFGVLTAAFHLLNMVGWLPAYTG
>NZ_CP013067.1|WP_060583321.1|92381_92759_-|hypothetical-protein
MDRKFVVCALSYALLGMLLGIHMAASQNHGQFVTHAHIMLVGFVVSFIYALCHRLWLGNPTGRLVQIQFYLHQGGALLMAVGLFQLYGKRMPPEQIEPVLSLASLLVLAAMAIMLYLFLRTRSLP
>NZ_CP013067.1|WP_082634733.1|91603_92293_-|hypothetical-protein
MKAKFNLVTPPEPQSVAQTEQLQARLPELAQQIRSQPTPTLRPDGFPPSYQTMQQTGFAARHGDYRLHTGGDVFIHATREQGRAEGEFQGDKVHLSVHPDHLDRAFAELGPLLFSGDSPIDKWKVTDLAKVDRDSRVAKGAQFTLYIKPEQADSQYQARDLGRVRHFIEQLESSLNRAGIPLGEAPASDVAPHHWHYTSYRNEHRSDRDGSADQATRLREEPVYRLLTE
>NZ_CP013067.1|WP_060583320.1|90388_91597_+|4Fe-4S-binding-protein
MTAIESLTVAAGASALAWGLLQRRGWAVWPALLLVIAAWVVAADLWLWGALALVTGFLGWRGLRHPHAGPATTERLREGMRHLLLLSWALVAGQYLIYVWQLGRGETPLLARPDVVDAFLLIAGGLGLRAWGQLGMTDPHHPAATVTVLVLTLSALLIGRSFCGWACPLGVLGEWLHRLRCRLLPGEWTPPRWLDGVLRAQKWLVLGFLLFIIVLAVPTAALPGYLASPYHQAADMKMGAFFFNLTLLSGLCLGWVVLLTATFRQGFCRYLCPYGAWLGLLGVLSPLRVRRDEVRCLRSLGHDCDRCSRACPSRIAVHQVIAVRNLECSDCRRCIEACPKRADALHLGTKRCRVSTPLQLALLSLFLFLLPLLADGLLGLWVSQTPLEVRRNLLHILPYLSH
>NZ_CP013067.1|WP_162491591.1|89064_90159_+|tRNA-(uridine(54)-C5)-methyltransferase-TrmA
MSHTPAAYQQQLDAKAERLRALFAAFQPPVLEVFASPAEHYRMRAEFRVWHDGDDLYHIMFDQETRQRIRVDQFPVASRLINDLMPRLVEGIKPHPVLRRKLFQIDYLSTRSGQVIVSLLYHRKLDEQWQAAAEALRTSLREQGFELQLIGRAHKQKICLEQEFVDEVLEVEGRSYTYRQVENSFTQPNAEINQKMLTWARDVTRESEGDLLELYCGNGNFSIALAENFERVLATEIAKPSVESAQYNIAANGIDNLIILRMSAEEFTMAMRGEREFNRLKGIDLSDYRCNTIFVDPPRAGLDPATVRLVQEYDHILYISCNPETLQENMAVLGETHEIARFALFDQFPWTHHMEAGVYLRRKG
>NZ_CP013067.1|WP_060583316.1|88645_88909_-|hypothetical-protein
MQIDGVGKGVAAGTDLANKSREKGAARAESPRDQGDQVSLHGRPRWAQALVQQALQFSLEINGGHYQAPKQTEEVTPDTLLVMTPIS
>NZ_CP013067.1|WP_158453510.1|87030_87933_-|DUF5610-domain-containg-protein
MISAQPIGGITTLFDFEEVAKNVLSFVTGRLGAARADGKGDDELGTMMEQARKGVDMGFEQARKMLGDLATDNEDIKTGIDQSYKLIQEGLDQFEKEFFGQVSATDMAAAQLASRQQGSLEIETRDGDKVVLRFNDSWQFQASSSDQGSKVSFQYSQSFSFSLQGNLSEAETGAIGQLIKGLDTLAHSFFSGNLDAIPDQLGDLQLDDSQLASFSLKVKQQSRVNLAYQGDHSLQDLLKPLANYLPKLQQWQSQADEALPPPSQQSLTQSVLTAQGRDQEQLQRFNGFNQRMLDALHLMG
>NZ_CP013067.1|WP_060583314.1|86438_86966_-|cobalamin-adenosyltransferase
MNPKRPRDKRELCYPFIFETRLQCDYEIATDELCSQVGAVMAMLPAGVEEVAADLDQLQRLIYNLNGSVRGRLGIFESDLDWLKGRYDHYNEANRGRVTGFVLPRGPMPIPTLHLCRCGAKKVMRLLVRLEEDGVAFDPILYRFANLLANFFFVLCVHVKGEMGIPEVEYVSINY
>NZ_CP013067.1|WP_060583312.1|85377_86382_+|substrate-binding-domain-containing-protein
MATIKDVAARAGVSISTVSHVLNHTRRVSEDATQKVLEAVAELNYAPNSVARSLKVNSTKTIGMLVTTSANPFFAEVVQGVEAYCFEQGYSLILCNTENQPPRQRHYLRMLMEKRVDGLLVLGTDIDSTLRDMLRSYKNVPQVVLDWGTECDFANVINDNARSGASMATRYLLEQGHTDIACITGQLGKQTTQQRLDGVRDALGERGLTLSEARIFEGDYESQSGFDQMQRILALTPRPTAVFAFDDPMAIGAICAAWEAGVKVPDDISVVGYDDVEMARFSSPPLTTIRHPKAELGQMAVQQLVGRIRNKELSVESFTVEPELIIRHSVKTMK
>NZ_CP013067.1|WP_144431307.1|97212_97497_+|hypothetical-protein
MKVVYENRFKWFSDVNSVVSEEIKKAHPRAWNEDHVTYNIISALRERHSNVYIVQDPPQYKSYGVSWDAFKNTKKDNIEPQYGDISILVRIELG
>NZ_CP013067.1|WP_060583260.1|97578_98619_-|IS481-family-transposase
MTTNEKVARRKLSLLELAKELNNVSKACKLIGYSRQQFYEIRRNYQTYGAEGLLDKLPGCKGAHPNRVAPEIEQAILDYSLTRPTQGPLRVAQELALQGINVSAGGVRGVWQRHDLLSKHDRLLRLEKTHREQTIELNDEQIRLLERFSPEFRERQIEVHYTGELVAVDTFFVGALKGVGKVYLQTVLDCYSRHAWGRLYTSKLPVTSVHVLNETVLPFFEAHEARVYTILSDNGREFCGRPDQHPYELFLQLEGIEHRTTKVRRPQSNGFIERLHRTLLDEHFRIKGRTTWYESVEQMQTDLDSYLEHYNTQRPHQGRMMEGQTPYSMFKKGLKLIPKEVRTKVA
>NZ_CP013067.1|WP_060583329.1|98791_100861_-|glycine--tRNA-ligase-subunit-beta
MAQHTFLVEIGTAELPPKALRSLAEAFEANFKAELTKADLAFAGVEWFASPRRLALKVFGLAAEQPSKSVEKRGPAVAQAFDADGKPTKAAEGWARGNGITVEQAERLVTDKGEWLVHTAKVEGRPAKDLLGELVASSLAKLPIPKMMRWGDKTIQFVRPVFTVTLLLDGDLVPAHILGIDSARTLRGHRFMGEPELTIESADQYPQILQERGMVIADFMARKAKIKADVEAAAAAFGGVADLDDALLEEVTALVEWPVVLTANFEEKFLAVPAEALVHTMKGDQKYFPVYDQSGKLLPKFIFVTNIESKDPSQIIAGNEKVVRPRLSDAEFFFKTDLKQTLASRLPRLETVLFQQQLGTVRAKAARIEAMAGFIAAKIGADVGQAQRAGLLSKCDLMTNMVSEFTDTQGVMGMHYARHDGEAEAVALALNEQYMPRFAGDALPAGLVSCAVALADKFDTLAGIFGIGMLPKGDKDPFALRRAAIGALRIMTEKQLDLDLVELVEEAVSVYGDKLTNKTVVTDVVDFMLGRFRAAYQDEGIAADVVLAVLARRPTRPLDFDRRVKAVSHFRTLDAALALAAANKRVSNILAKVEGELPTTVKPELLVDAAEKALATQVAELQAELAPLFAAGDYQAALTRLAALREPVDTFFNEVMVMADDEALKANRLALLNNLRNLFLQVADISLLQ
>NZ_CP013067.1|WP_050666318.1|100870_101794_-|glycine--tRNA-ligase-subunit-alpha
MQKFDVKTFQGLILQLQDYWSRQGCTIIQPLDMEVGAGTSHPMTCLRALGPEPIACAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLKELGMDPQVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEHADVEFLFHCFEQYEKEAQSLLALEKPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRIRTLTKAVAEAYYASREALGFPMCQRAENKQG
>NZ_CP013067.1|WP_060588187.1|101887_102496_+|DNA-3-methyladenine-glycosylase-I
MTLRCAWVTRDPEYIEYHDAQWGRPVRDGRELFAKLCLDGLQAGLSWITILKRTPGYYRAFAGFDPVVIAAFGEADVERLMQDTGIIRNRLKVQSIIKNARAYLAMQEEGVDFAGFLWDFVGGRPIVNRRQGDGDIPATSKESDAMSRALKKRGFTFVGSTICYAFMQAVGMVNDHLVSCPCHAECQQAWGIGVTHRGEGAV
>NZ_CP013067.1|WP_050666320.1|104416_105388_+|TAXI-family-TRAP-transporter-solute-binding-subunit
MKGLTLACAVSAALFGLLPGTQAQAAERFVTIGTGGQTGVYYVAGQSICRFLNQGTKTHEIKCNAPASGGGVANVNGIRSGEFNFGIMQSDHQYKAMKGLEPFKAEGAMEDIRAVFSLQSEVFTILARKDAKIAGFDDLKGKRVNIGNPGSGQRDTFEEIMAVKGWDKGVFSLVSELKPAEQASALGDNNIDAMSYFVGHPNGAIQEASTTTDAVLVPVTGPEIDKLLAERSYYSKAEIPGGLYKGSPNPTPSIGGKAVLSVSAKTDPEVVYQLTKSVFDNLARFKRLHPAFADLKETDMIKVGLSAPLHEGAVRYYKERGWM
>NZ_CP013067.1|WP_060583332.1|105470_108029_+|TRAP-transporter-permease
MQQAQQHDALSAEELIAQDVGARLPVGSMSWVIAGLALVWSLFQLWIASPLPFMLGVGVLNDTESRSIHLAFAILLAYLVFPFGRRSPRDRVPLPDLGLGLIGALVAGYLFLAYDQLALRPGNLTDLDFMVACIGIPLLLEAARRALGPALAVIAIVFLGYSLAGPWMPSLLAHRGVSLHALANHQWITTEGVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSLLGHLRGGPAKAAVVASALTGVISGSSIANVVTTGTFTIPMMKRVGFSKEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYVGIPYVDIIKHAFLPAAISYIALLYIVHLEALKLGMQPIGSRHPRTWLQRLTGFAFGAALISGLSMAVYYGLGWLKPALGEYALPVVGALLVLVYLGLLKIAASNAPLPPEDPEQPLDDLPDTRAVLLSGLHFLLPVVVLVWCLMVERLSPGLSAFWGTIMLVVILLTQRPLLNWLRTDGQHDYGSLMDGVVDLREGLIAGARNMIGIGIATATAGIIVGAVSQTGVGLVLADLVEFLSMGNLLLMLMLTALLSLILGMGLPTTANYIVVSSLLAPVVVALGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSKGDPIKTGITAFYYSLRTAALPFLFIFNTDLLLINVDFAHGVLIFIVATFAMLIFAAGTQGYFLVKSRWYESLLLLLVAFTLFRPGFWMDMVHDPYVETPPAQLVQTLGQVEADSTLRLRLEGPDAVGKIRRFTVLLPVPDGASGEARLEKLGLMLYEQEGKTLIDSVTFGSTAADLGLEFDQQILSVKAPTDRIRKEFMWIPGFMLFALVVWLQRRRPV
>NZ_CP013067.1|WP_060583334.1|108375_109632_+|HAAAP-family-serine/threonine-permease
MDISVSSPVTPRAESLSRWQRHDTQWVISLFGTAVGAGILFLPINLGLGGIWPLLLVAVLAGPMTYLAHLGLTRFVLSSSRPGADFTEVAEEHFGAVSGRLISVLYFLSIFPILLIYGVGLTNTVESFMVNQLGMAMPPRVMLSGLLVFLMVAVMLAGEKAMLRAFAFMVYPLAAILAALSFYLMPEWRWPAGSELQGFDFAKTVWLALPVTVFAFSHAAALSGFANVQQRHYGDGAGEKSRQILLRTSLMLVSFVLFFVFSCVLALSPEQLAAAKAQNVSVLSYLANVTDNPVIVTLGPVIAFIAITSSFLGHFLGARASLQNLLARQGLSSERADKVGIAFMFFAIWGAAVVNPSILGLMEVLSGPVIAMILFIMPVIAIYKVPAMAHLKENRIANGFILLTGTLSVSALLFSLLR
>NZ_CP013067.1|WP_050666323.1|109690_110014_-|met-regulon-transcriptional-regulator-MetJ
MGTEWNGDYVSPYAEHGKKSELVKKITVSIPLKVLKVLTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPSDDDLRKDKPDHIPAEALAIMQALGKEIEEFDND
>NZ_CP013067.1|WP_060583342.1|110173_111337_+|cystathionine-gamma-synthase
MSDKGTRAVRIGIESDTQHGAVVPPIYLSSNYTFADFGEPRQYDYARSGNPTRSHLAEALAALEGGSGAIVTSTGMGAVHLVSTTLLAAGDLLIAPHDCYGGTWRLFEHLAAKGCYRVKFVDQGDPEALATALAEGPKLVWVETPSNPLLRVVDVAAICDAAHEAGALVAVDNTFLTPFWQQPLSLGADLVVHSTTKYINGHSDVVGGAVVAADGELAERLTWWANCLGVTGGAFDSYLTLRGLRTLGARLRAHEENARQILDFLQSQSVVKRIYHPSLPSHPGHEIARRQQAGFGAMVSFELSLDEAGIRAFLGALRCFSVAESLGGVESLIAHPASMTHRAMTPEAQLRAGISGQLLRLSVGIEHGPDLVADLAQALAIATRVEA

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013067_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013067_2

817073-817180

Orphan

Consensus_repeat	Method
GCTCGGTCGAGCTCCTTGCCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013067_2

>merge|NZ_CP013067|2|817073-817180|CRISPRCasFinder
GCTCGGTCGAGCTCCTTGCCTACGACGGGCCCCTGCATGCGAGGGCGCTGCCCTCGAAAGGGTTTCGCCCGCCCATCAGGAGGCGCTCAGTCGAGCTCCTTGCCTACG

>NZ_CP013067|2|2|817073-817180|CRISPRCasFinder
GCTCGGTCGAGCTCCTTGCCTACG	ACGGGCCCCTGCATGCGAGGGCGCTGCCCTCGAAAGGGTTTCGCCCGCCCATCAGGAGGC
GCTCAGTCGAGCTCCTTGCCTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013067.1\|WP_060584286.1\|821230_821548_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060584280.1\|814808_815606_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP013067.1\|WP_060584282.1\|815625_817056_+\|gamma-aminobutyraldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237391
NZ_CP013067.1\|WP_060584273.1\|811697_812825_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270306
NZ_CP013067.1\|WP_005346554.1\|821627_821840_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060584288.1\|821886_822267_-\|SnoaL-like-domain-containing-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_144431330.1\|819963_820191_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060584285.1\|820196_821027_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP013067.1\|WP_060584269.1\|806976_807399_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_050666178.1\|810104_810485_+\|PilZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|377796
NZ_CP013067.1\|WP_050666177.1\|810576_811500_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176104
NZ_CP013067.1\|WP_060584299.1\|825107_825626_-\|redoxin-family-protein	unknown	unknown	gnl\|CDD\|239309
NZ_CP013067.1\|WP_060584290.1\|822390_823113_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NZ_CP013067.1\|WP_050666181.1\|807438_808506_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP013067.1\|WP_060584278.1\|813865_814819_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP013067.1\|WP_060584275.1\|812870_813869_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP013067.1\|WP_060584295.1\|824107_824608_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP013067.1\|WP_060584293.1\|823235_824063_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP013067.1\|WP_060584297.1\|824651_824906_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184244
NZ_CP013067.1\|WP_060584271.1\|809532_810015_+\|Rsd/AlgQ-family-anti-sigma-factor	unknown	unknown	gnl\|CDD\|377324

Protein	Function_ID	Function_description	E-value
NZ_CP013067.1\|WP_060584293.1\|823235_824063_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.88652e-28
NZ_CP013067.1\|WP_060584280.1\|814808_815606_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.18664e-71
NZ_CP013067.1\|WP_060584282.1\|815625_817056_+\|gamma-aminobutyraldehyde-dehydrogenase	gnl\|CDD\|237391	PRK13473, PRK13473, aminobutyraldehyde dehydrogenase.	0
NZ_CP013067.1\|WP_060584273.1\|811697_812825_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270306	cd13588, PBP2_polyamine_1, The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold. This group represents the periplasmic binding domain that functions as the primary high-affinity receptor of an uncharactertized ABC-type polyamine transport system. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.9184e-130
NZ_CP013067.1\|WP_050666178.1\|810104_810485_+\|PilZ-domain-containing-protein	gnl\|CDD\|377796	pfam07238, PilZ, PilZ domain. PilZ is a c-di-GMP binding domain which is found C terminal to pfam07317. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This domain forms a beta barrel structure.	3.00402e-12
NZ_CP013067.1\|WP_060584297.1\|824651_824906_-\|hypothetical-protein	gnl\|CDD\|184244	PRK13687, PRK13687, hypothetical protein; Provisional.	2.25823e-42
NZ_CP013067.1\|WP_060584285.1\|820196_821027_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.04628e-12
NZ_CP013067.1\|WP_050666177.1\|810576_811500_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176104	cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily. This family includes the C-terminal substrate domain of a putative LysR-type transcriptional regulator from the plant pathogen Pseudomonas aeruginosa PAO1and its closely related homologs. The LysR-type transcriptional regulators (LTTRs) are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of N2 fixing bacteria, and synthesis of virulence factors, to a name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	5.48944e-72
NZ_CP013067.1\|WP_060584299.1\|825107_825626_-\|redoxin-family-protein	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	5.85312e-40
NZ_CP013067.1\|WP_060584290.1\|822390_823113_-\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	4.45057e-104
NZ_CP013067.1\|WP_050666181.1\|807438_808506_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP013067.1\|WP_060584278.1\|813865_814819_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	3.30408e-69
NZ_CP013067.1\|WP_060584275.1\|812870_813869_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.68462e-154
NZ_CP013067.1\|WP_060584295.1\|824107_824608_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.9528e-45
NZ_CP013067.1\|WP_060584271.1\|809532_810015_+\|Rsd/AlgQ-family-anti-sigma-factor	gnl\|CDD\|377324	pfam04353, Rsd_AlgQ, Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ. This family includes bacterial transcriptional regulators that are thought to act through an interaction with the conserved region 4 of the sigma(70) subunit of RNA polymerase. The Pseudomonas aeruginosa homolog, AlgQ, positively regulates virulence gene expression and is associated with the mucoid phenotype observed in Pseudomonas aeruginosa isolates from cystic fibrosis patients.	2.31853e-59

>NZ_CP013067.1|WP_060584282.1|815625_817056_+|gamma-aminobutyraldehyde-dehydrogenase
MKISTQQLIDGQFVTGEGQSEPVLNPATGELIVALPEASFEQVSRAVNAAQRAFGSWRHTTPATRSNLLLRLAAAIEEHAEELAALESLNCGKPYAAVLGDELPAVVDCFRFFAGAARCLHGPLAGEYLDGHTSMIRRDPIGVVGSIAPWNYPLMMAAWKMAPVLAAGNTVVLKPSEQTPLTALRLAELASEIFPRGVVNVICGRGESVGAPLVEHPLVRMVSLTGDIATGQKILQSAARTMKRTHLELGGKAPVIVFDDADLEAVVAGIRTFGFYNAGQDCTAACRIYAQGKIYDKFVAAMTDAVASIRVGSQHEEGIEMGPLISDRQRHRVASFVERAVSSGHMEVTTGGRMRAGNGFFYEPTLIVGARQEDEIVRREVFGPVVSVTRFSDAEQVVQWANDSDYGLASSVWTRDLGLAHRVAAGLQYGCTWINTHFMLATEMPHGGMKMSGYGKDLSLYALEDYTVPRHIMVKL
>NZ_CP013067.1|WP_060584280.1|814808_815606_+|ABC-transporter-permease
MRFDRAGSGLRLAAYGGLVFLHLPMLFIFLYAFTTESKSYQFPPPGLTLKWIGVTLERPDVWRAIRLSLEVASLATLVALLLGTLAAAAIARSRFFGQEVVSLLLILPIALPGIVTGLALRSAYGVLEIPFSFWTIVIGHATFCVVVVYNNALARFRRTHRSLIEASMDLGADGFQTVRYVILPNIATALLAGGMLAFALSFDEVIVTTFTAGQQTTLPIWMYQELIRPRDRPVTNVVALIIVAVTTVPILLAYYLTRDGNDAAR
>NZ_CP013067.1|WP_060584278.1|813865_814819_+|ABC-transporter-permease
MNSASLTMPSHAPRAPLRRRLSTLLYGRSGLLLGILLGPPLIWLGLIYAGSLLMLLSNAFFGLDEFSGQIRYAFTWQNFIDLARPENRDVILRTLTMSLLVTLACALLAFPIAYYMARYTRGRQRAFFYIAIMLPLWSSYLVRVYAWKLILAKEGAINWLAGQLGLDGVLQALLSLPAIGGPSLSFSRLGTFIVFVYVWLPFMILPIQAAVERIPVSLIEASADLGATPGQTFRTLLLPLALPGVVAGSIFTFSLTLGDYIIPGIIGNSTLYIGQVVYMQQGTAGNLPFAAAFSLVPILIIAIYLTVAKRLGAFDAL
>NZ_CP013067.1|WP_060584275.1|812870_813869_+|ABC-transporter-ATP-binding-protein
MHAVQFERVSRHYGAVKAVDQVSLAIAPGEFFSLLGPSGSGKTTCLRMLAGFEYPTGGTIRLFGEACSTLPPYERPLNTVFQDYALFPNMNVRDNIAYGLMIKGVDRAGRYRRADEMLELVRLPGVGDRHPGQLSGGQRQRIAIARALINQPRVLLLDEPLGALDLKLREQMQLELKALQRQLGITFIFVTHDQQEALSMSDRLCIFNQGRIEQVAAPETIYDTPATPFVARFVGSVNLFEGEAARRLTGHSGQVMVRPERIRLATAGTPGWSGEVREVEYLGPYVRYRVRIDSDIELIVNHPNEGQARLPLGERVSLSWAAPAVHALGATP
>NZ_CP013067.1|WP_060584273.1|811697_812825_+|ABC-transporter-substrate-binding-protein
MRARALCLGLLASSLPLHAAPQGEGQVDIVAWAGYVERGETDKNYDWVTGFEKATGCKVTVKTAATSDEMVALMNEGGFDLVTASGDASLRLIAGGKVQPIDLSRIPSWNKIDPRLQNATWHKVGGKHYGVPYQWGSNVLMYNTKVFPKAPDSWSVVFEPQTLPDGKPNKGRIQAFDGPIYIADAALYLMTHKPELGIKDPYELNEDQYKATLDLLRQQRQLVGRYWHDAFVQIDDFKNEGVVASSSWPFQANTLAAEKQPVATVVPREGVTGWADTTMLHSEAKHPVCAYQWLEHSLNPKLQGDLAAWFGSVPVVPAACQGNALLGDKGCQTNGADNFDKVHFWRTPTTQCQTQGACVPYYRWVSDYIAVLGGR
>NZ_CP013067.1|WP_050666177.1|810576_811500_+|LysR-family-transcriptional-regulator
MNFTFRQVRYFVAVADCLSVSRAAQELHISQSAVTGAIRELEEGVGATLFERGPRGVTLTPQGHQFLLHARRILGAMSDAAHSLKGAAKEEEGRLTIGVTSLVAGYYLSDALGRFRRLFPGVNIEVKEDEQAFLEHQIVNGEIDVGLLMTNRTIRHEAFETELLTRSPLRLWLPANHPLCAQPSLSLTELAEEPLIALTADQMEQVIQAGLRRYGLRPRIVLRTGSVEAVRSLVTSHLGLALLPDFAYRPWSLEQERVEAREIKEPIPAIDIGLVWRRGSHLPWEAREFIEIAKEQGRLRARLGPTR
>NZ_CP013067.1|WP_050666178.1|810104_810485_+|PilZ-domain-containing-protein
MSERRRFSRILYSTPARLSQGERHWQTELIDISLQGALIRRPSDWSHGESLDYHLTFHLAGSEIEIKMEVELSHLDDEKLGLYCHHLDIDSATHLRRMIELNVGDEDLLHRELEELLEEHLEHPHP
>NZ_CP013067.1|WP_060584271.1|809532_810015_+|Rsd/AlgQ-family-anti-sigma-factor
MLSKLEQTRQKYAGQHSAIDAFLDARQTLLVEYMKLAGLSAQRSKARSLPCCDAITGFCDLLVDYVSAGHFEIYDHVMHAYENAKGEQLELAQSIYPKLRACTDFALRFNDKYADAQEDELLSLDEDLNRLGPVLEERFRQEDQLVKALQLLEQLTAPTQ
>NZ_CP013067.1|WP_050666181.1|807438_808506_-|uroporphyrinogen-decarboxylase
MSELKNDRYLRALLRQEVDMTPVWMMRQAGRYLPEYKATRAQAGDFMSLCRNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEQGEGPRFERPVRSLADVQALPVPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTRIKQMMYADPRALHLLLDKLADSVILYLNAQIRAGAQSVMVFDTWGGVLTPRDYRDFSLHYMHKIVDGLIREHDGRRVPVTLFTKNGGQWLEQIAATGCDALGLDWTTDIADARRRVGDKVALQGNMDPSMLYASPARIREEVGSILAGFGKGTGHVFNLGHGIHQDVDPAHAGVFVDAVHELSRPYHGG
>NZ_CP013067.1|WP_060584269.1|806976_807399_+|hypothetical-protein
MKRWFWLLALLLGACSSGPGADEVTRLVQAHLQAELGSALVEPVDLTIVEQSETQEGLYKVAVRYQLHFLKDFAELDTQSNDDLVYDGNGKFHQDLPLMTLESRYGEFKAGERRAQESTLWVVRTEQGWRLAEPVAAPHS
>NZ_CP013067.1|WP_144431330.1|819963_820191_-|hypothetical-protein
MAKPARASPPTPYLFITTMSGPPLAIGGWTLSQPINTRKETRKWIPTALKQGQSAIASKNKKSNKIDKNKLILPD
>NZ_CP013067.1|WP_060584285.1|820196_821027_-|CPBP-family-intramembrane-metalloprotease
MMTIALFTSWAPLWLAILLALFGRQREAWLLLALFLGWATIKGAITPQALSFAFSGLVLAWCLPTLSPRWRMGGHLLLLLWMVALLHHKVPGFHNPLVLERVLAGGQSVPFNLYFNYDKPLIFFALLLAWPGLRGSGGPINRRALLLLPLPMLGLLLLAWQLGALRPEVGLPDWWLLFAINNLLLTCVVEEALFRGYLQQGLVRRFSLPIGLPLAALLFGADHLAGGPLMMIFAALAGLCYGLAFHWSQRLWVAVLFHFALNITHLALFTYPLARH
>NZ_CP013067.1|WP_060584286.1|821230_821548_+|hypothetical-protein
MRVIPLLLCAVWPLQAETIKPVQEGTLANQQLIRDALVGVAGQVAALGCDAPERFVPVVLQLPKGEPGSRYWKERWEVEGCGKRYPVVMDFRETGMESAMWSIVP
>NZ_CP013067.1|WP_005346554.1|821627_821840_+|hypothetical-protein
METEKAIGLIEAHGAFHGDHYSFNSDEFVQWCEEDAHQRLTLDQANHDLSPFCIRVGYSEPVRMWRYYLT
>NZ_CP013067.1|WP_060584288.1|821886_822267_-|SnoaL-like-domain-containing-protein
MIQSRQWAQELLAWNRHHLRAEATLDEAAIGERFAEHFTVRANGREYQTDRPGYLAFLQGFRASNATIDYRVQEWVCEPGSAVLAMQASVTRLSGKAERFEAILLLRFDERGLITLWQELYLPSPQ
>NZ_CP013067.1|WP_060584290.1|822390_823113_-|SDR-family-oxidoreductase
MTQPLIVITGASSGFGAACARLFAERGYPLLLLARRIERLEALALPNTLCRQVDVTDRAALTAALAEAEARFGPADLIVNNAGQMLLGRLAEQDPSEWDRMLDVNVKGVLNGIHAVLPGMLARRHGTIINISSIAGRKTFRNHAAYCGTKFAVHAISENLREEVAMQDVRVITIAPGAAETELLSHTSSDEIKAGYDQWKEHMGGVISAQDIAEAVRFAYEQPQHLCIREIVLAATRQEP
>NZ_CP013067.1|WP_060584293.1|823235_824063_+|LysR-family-transcriptional-regulator
MDVRPLRAFVAVFEERNITAAAARLFITQPTLSATLKGLEEELGTALFTRQARGVEATEAARRLYPGAKRLIGDAEALARSLRAAEPHLELTVGIEGELGAELVGALSAHLAAIEGLRFTLAEGCCGDLRLGCESLRCEDELFLPLLEEPFLLALPPGHPLAGEEALAPERLAGECWVMCPHHYAQQRLLAILGNQAPVWPQHAGTLALALAARMVAAGVGIAWLPASLIAPGCARVALAAPPLKRRLGLCYSPDALRLPAVVALMARLRADVAP
>NZ_CP013067.1|WP_060584295.1|824107_824608_-|N-acetyltransferase
MLTRNECPGDIATIDALTRAAFATHPHSRQTEHCIVAALRASGRLTHSLVAEEGGELLGHVALSPLTLSSGQTGWFGLGPISVWPSRQGGGVGSALMSAAIQALQAEGAAGIVLVGEPDYYGRFGFVAAPTLQLPGLPPEYLLALPLAGGTPNGAVQFDPAFDASC
>NZ_CP013067.1|WP_060584297.1|824651_824906_-|hypothetical-protein
MNLSKPEQRTLHVLAKGGRLLVLRDGPRILHVECYTREGYLLSDCTVVTFTRLRNKRLITSRDGQPYRINRHGLQAVRAQLDNR
>NZ_CP013067.1|WP_060584299.1|825107_825626_-|redoxin-family-protein
MSRRVRAWFKEGALALLLLVLVTGVADWLRAPDATSLSLQPLTTLAGERVDLAALSRDRPLLIYVWASWCGVCRFTGDAVQSLHEDGVPVLGIALRSGDDPTLSRYLARQGYDVANINDQDGAIGASLGVSVTPTFLMVKGGKVVGSTTGWSSGPGLRLRLRLARWIDTEGA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013067_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013067_3

3090042-3090122

Orphan

Consensus_repeat	Method
GACGCCCAATAACCCCAAACAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013067_3

>merge|NZ_CP013067|3|3090042-3090122|CRISPRCasFinder
GACGCCCAATAACCCCAAACAACAATGGGTGTCCATGTTAATTGCCACTGTAGAGCCTGACGCCCAATAGCCCCAAACAAC

>NZ_CP013067|3|3|3090042-3090122|CRISPRCasFinder
GACGCCCAATAACCCCAAACAAC	AATGGGTGTCCATGTTAATTGCCACTGTAGAGCCT
GACGCCCAATAGCCCCAAACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013067.1\|WP_060586976.1\|3087634_3088336_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|237368
NZ_CP013067.1\|WP_060586970.1\|3082242_3083214_-\|transcriptional-regulator-GcvA	unknown	unknown	gnl\|CDD\|182990
NZ_CP013067.1\|WP_050667979.1\|3097310_3099038_+\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	unknown	unknown	gnl\|CDD\|368840
NZ_CP013067.1\|WP_060586972.1\|3083451_3084225_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP013067.1\|WP_060586982.1\|3093814_3096274_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	unknown	unknown	gnl\|CDD\|181856
NZ_CP013067.1\|WP_144431437.1\|3086050_3087255_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|181829
NZ_CP013067.1\|WP_060588312.1\|3092837_3093812_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP013067.1\|WP_060586984.1\|3099106_3101974_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP013067.1\|WP_050667981.1\|3102016_3102418_-\|META-domain-containing-protein	unknown	unknown	gnl\|CDD\|377111
NZ_CP013067.1\|WP_060586964.1\|3078612_3079518_-\|LysR-family-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
NZ_CP013067.1\|WP_050666878.1\|3080876_3082055_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP013067.1\|WP_060586974.1\|3084735_3085413_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP013067.1\|WP_060586979.1\|3091566_3092841_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP013067.1\|WP_060586987.1\|3103156_3103612_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NZ_CP013067.1\|WP_060586968.1\|3080256_3080754_+\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239824
NZ_CP013067.1\|WP_050667978.1\|3096501_3097191_-\|tRNA/rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|236693
NZ_CP013067.1\|WP_060586978.1\|3088901_3089879_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060586966.1\|3079615_3080260_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_CP013067.1\|WP_060586985.1\|3102669_3103119_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443
NZ_CP013067.1\|WP_060584132.1\|3090230_3091148_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290455

Protein	Function_ID	Function_description	E-value
NZ_CP013067.1\|WP_060586976.1\|3087634_3088336_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|237368	PRK13374, PRK13374, DeoD-type purine-nucleoside phosphorylase.	6.33578e-165
NZ_CP013067.1\|WP_060586970.1\|3082242_3083214_-\|transcriptional-regulator-GcvA	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.75932e-105
NZ_CP013067.1\|WP_050667979.1\|3097310_3099038_+\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	gnl\|CDD\|368840	pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase (AceK). This family consists of several bacterial isocitrate dehydrogenase kinase/phosphatase (AceK) proteins (EC:2.7.1.116).	0
NZ_CP013067.1\|WP_060586972.1\|3083451_3084225_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.43488e-63
NZ_CP013067.1\|WP_060586982.1\|3093814_3096274_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	gnl\|CDD\|181856	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional.	0
NZ_CP013067.1\|WP_144431437.1\|3086050_3087255_+\|IS3-family-transposase	gnl\|CDD\|181829	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed.	3.81436e-143
NZ_CP013067.1\|WP_060588312.1\|3092837_3093812_-\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	9.71029e-134
NZ_CP013067.1\|WP_060586984.1\|3099106_3101974_+\|HAMP-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	5.29377e-29
NZ_CP013067.1\|WP_050667981.1\|3102016_3102418_-\|META-domain-containing-protein	gnl\|CDD\|377111	pfam03724, META, META domain. Small domain family found in proteins of of unknown function. Some are secreted and implicated in motility in bacteria. Also occurs in Leishmania spp. as an essential gene. Over-expression in L.amazonensis increases virulence. A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond.	9.8687e-22
NZ_CP013067.1\|WP_060586964.1\|3078612_3079518_-\|LysR-family-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	1.34946e-146
NZ_CP013067.1\|WP_050666878.1\|3080876_3082055_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	2.41698e-75
NZ_CP013067.1\|WP_060586974.1\|3084735_3085413_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	4.3845e-12
NZ_CP013067.1\|WP_060586979.1\|3091566_3092841_-\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP013067.1\|WP_060586987.1\|3103156_3103612_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	1.27728e-79
NZ_CP013067.1\|WP_060586968.1\|3080256_3080754_+\|YbaK/EbsC-family-protein	gnl\|CDD\|239824	cd04332, YbaK_like, YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).	1.12283e-26
NZ_CP013067.1\|WP_050667978.1\|3096501_3097191_-\|tRNA/rRNA-methyltransferase	gnl\|CDD\|236693	PRK10433, PRK10433, putative RNA methyltransferase; Provisional.	1.64406e-118
NZ_CP013067.1\|WP_060586966.1\|3079615_3080260_+\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	5.70406e-65
NZ_CP013067.1\|WP_060586985.1\|3102669_3103119_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	6.55579e-99
NZ_CP013067.1\|WP_060584132.1\|3090230_3091148_-\|IS5-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	5.50293e-51

>NZ_CP013067.1|WP_060586978.1|3088901_3089879_-|hypothetical-protein
MPLPRRSQVSLADTPYYHCVARCVRRAYLCGLDAQSGQSYAHRREWVESRILLLGQLFAIHICAYAVMSNHLHLVLHVDKESALGWSDAEVVERWHRLCSGTFLTRRFAKGESLDEAQWLAVQATIGIYRQRLMDISWLMRLLCEPIARQANREDGCTGHFWEGRFKSQALLNESALLACMAYVELNPVRAAMAETPESSDFTSIQRRIRAALEGKQPDELLPFVGDEHQALTHGLTFSLADYLELVDESGRWLRGDKRGAMSPGCARILARLGLPAAHWEKLTRDFRRLFKGPAGTPDELGHFCEHLQRKRRQGLANGRRWLCA
>NZ_CP013067.1|WP_060586976.1|3087634_3088336_-|purine-nucleoside-phosphorylase
MTAHINAQPGDFAQTVIMPGDPLRARYIAETFLEDVREVTNVRNMLGYTGYFKGQRISVMGHGMGIPSMVLYAHELVNDFGVRRIIRVGSLGATQHHVQMRDVILAQAAGTDSPTNAKRSSGYQMATSADFELLHKAFSQARQQGIPVKVGNVFSGDLYYDPDENLIPALEKFGVLGIDMEVAGLYGLAHQQGIEALAILTVSDHCLTGEETTAQERQLSFNQMIELALHTAC
>NZ_CP013067.1|WP_144431437.1|3086050_3087255_+|IS3-family-transposase
MVEVLTGAERRRRRTPQEKIAIVQQTFEPGMTVSHVARLHDVNANQLFKWRKQFQEGSLTAITAGEDVVPASELAAAIKQIRELQRLLGKKTMENEILKEAVEYGPSKKMDCACALVAGGRRLSAVSQALNVSRAQLSVRVHRKPGWQDGRHHRQHDDAALLGRIMEAMAELPSYGYRRVWALLRRQSEATRQPVVNAKRVYRVMRDHGLLLERKPAAPLAQQAHKGRVAVKESNRRWCSDGFEFRCDNGEKLRVTFAMDCCDREALDWAASTGGYDSDTVQDVMLRSVERRFGDALPASPVEWLTDNGSAYRAHETRAFAREIGLEPRTTAVRSPQSNGIAESFVKTMKRDYIEMMPKPDSRTAVGNLAIAFEHYNEHHPHSALGYRSPREFLRSRVSQP
>NZ_CP013067.1|WP_060586974.1|3084735_3085413_+|Crp/Fnr-family-transcriptional-regulator
MQLKPLFKGRFRRHWQDNHDLVIRVVESCIRERRMVAEGEHLLTQGESDPPMMPVPEGRIAMGYTAMNGRRFQLGTMECDNQIFGEMEFFTGYRCQLDILALEPLTIARIDSALLEQELLAHPEVALFFATAMAIDYQDTVDIFACRMLFPISYNIAWDLYHSYHHDNPVSGFRKSYLEAERFGTTDRVYRRAVKELVELGLVRRGEEGLEIADLAALRTFLEQP
>NZ_CP013067.1|WP_060586972.1|3083451_3084225_+|SDR-family-oxidoreductase
MNNQFSGKKLLVVGGTSGMGMETARIVLAQGGSVVIVGHRPEKSEEARKTLATLGPVWALTADLTSEAGINRLLGTIETEHPDADLLVNAAGVFFPKPFLEHKDADYDQYMALNKAFFFITQKVAANLVARERAGAIVNIGSMWAKQAIAATPSSAYSMAKAGLHSLTQHLAMELAQHKIRVNAVSPAVVQTPIYEGFIPKDEVHNALQGFNSFHPIGRVGTPQDVAEVVAFLLSDKADWVTGAIWDVDGGVMAGRN
>NZ_CP013067.1|WP_060586970.1|3082242_3083214_-|transcriptional-regulator-GcvA
MKTPIHLNALRAFEASARHLSFSAAAQELHVTPAAVGQLVRHLEEWVGTPLFIRQRSGKARLVLTDSAERALPDISAGFERLGLGVTKIREGALAGVLTVAVSPAFAAKWLLPRIDRFQEVCPDTDVRLDTNLKPVDFAAQGIDIGVRYGLGHWPGLTATRLMDEEIYPVCSPQLLLDPHRLQQPADLLGETLIHDLSMDSHSGFPTWDSWLTQAGVKVESTIRGMKINNSAAVLQTAIEGHGIALARSVMASGDLASGRLVRLFKDIRFETPLAYYIVCRDGGGHAPRQAVFRDWLIQEARDHSPQGADSGADHRSVRAGKG
>NZ_CP013067.1|WP_050666878.1|3080876_3082055_+|dicarboxylate/amino-acid:cation-symporter
MKLIAKLLAGILLGLLIGLYAPEWMARLVFTAKALIGQLITFTIPLIILFFITSGIASLPKNSGRLLGQTVALSYGSTLMAGTLAFLVASHFIPLLASTSVMTSQEGVKLASYIKLEIPPLFGVMTALATAFVFGIGISATESHDLRKVADQGRDIIDRLLARVIIPLLPLYIAGVFVEMTVEGTVFTTLKTFGVVLVMAILMHWLWLSVLFVGTGLAQGRSPAALIKNMLPAYFTAIGTMSSAATIPVALRASKNNGVSDGIANFTVPLCATIHLCGSTITLVTCATAVMFLSEHLAIPSLSEMLPFIMMLGVVMIAAPGAPGGGVMSALGLLTSMLGFGDASIALMIALYLAQDSFGTACNVTGDGAIALWVDRFAKGQQGAPALEQDAA
>NZ_CP013067.1|WP_060586968.1|3080256_3080754_+|YbaK/EbsC-family-protein
MTLQALFDTCRQLFERSAVPHQAWQHEPILDYETDARLARELGWSAEPTKSLFLRCKDGSHALLLTHRDSRLDAKRLKAVLGQRPSVCSDEEMSAVTGCLPGAVCPFALPSSIPLVVDSGLLACEELMFTPGLPEWTFAFKGLHLPDLLAQLPNPVFWMGDETSH
>NZ_CP013067.1|WP_060586966.1|3079615_3080260_+|amino-acid-transporter
MKELIPLWQGLTLGLAMIVPIGAQNAFVLNQGIRRHHHLMVAAICIVCDVFLITLGVFGAGAVMSSQPLLLGLITAAGILFLATYGSLALRSALRPTGTSGEGDGVRLVGRMAVLLATLAVTLLNPHVYLDTLVILGSLGSQLAGDERPWFALGCLLASLLWFSALSLGAARFAPVLSRPRVKQGIDLLVGFIMLTLAGQLSLQLLESLGAEAL
>NZ_CP013067.1|WP_060586964.1|3078612_3079518_-|LysR-family-transcriptional-regulator-ArgP
MRGLDYHWLAALDAVVAHGGFDKGAQALFVTQSAISQRIKQLERWLAQPVLVRATPPRPTELGQRLLGHYRRVQLLEQELHPALSPEGSGPLSLAIAANADSLATWLLPALTPLMRSGQLLLNLMVDDESRTLNRLRSGEAVAAISSEPTPMAGCVSDSLGRLDYLCVASPAFASHYFADGIDAAALARAPAVVFDPHDDMYGVFLAERFALSSVAWPHHVVRSSEAFVKLALQGCAYCLIPRLMIEPELASGELVDLLPGQGVSRTLYWHRWALESGLLARLSEICIGRARTVLAQSEQV
>NZ_CP013067.1|WP_060584132.1|3090230_3091148_-|IS5-family-transposase
MGKSKHKISNWQQYNQALVQRGSLTIWMDAQAIKQWHCLVHHGRRGRGFHYSDTAIETALMLKGLFKLPLRALEGFINSLFQLMAVPLQSPDYSCISKRAKTVDIKYRLPSQGPVAHLVIDATGLKVYGEGEWKIRKHGKEKRRVWRKLHLAVDATTHVVIAAEVSLETVADNEVLPTLLNPLRRKIKQVSADGAYDTKACHALLQKKGAKATIPPRKNAAPWEEGHPRNEAVTALKSGELKQWKKDVGYHQRSIAETAMYRFKQLIGPKLSLRSYNAQVGEILAGVKVMNTLIGLGMPVRQPVN
>NZ_CP013067.1|WP_060586979.1|3091566_3092841_-|threonine-synthase
MNLYNIKDNSEQVSFAQAVRQGLGRGQGLFFPEVISPLEDVDALLDLPLRERSIRLLGHLLGDEVSEATLRQMVESAFTFPAPLAKVSDRIHALELFHGPTLAFKDFGGRFMAQCLAAFRTDEKITILTATSGDTGAAVAHAFYGLAGIEVVILYPKGKISPLQEKLFCTLGGNIRTIAIEGDFDACQALVKQSFDDEALKKAIGLNSANSINISRLLAQVCYYFEAIAQLPKAERANAVVSVPSGNFGNLTAGLIAKALGLPVKRFIAATNANDTVPRYLKTGVWEPHQTVATLSNAMDVSRPNNWPRVEELCRRMGWALETLSSAMRSDEQTVDALKRLHAEGYLCEPHGAIAWDALQSELKEDEVGVFLCTAHPAKFKESVDEILGLDVPLPGPLAKHAELPLLSVNLPAEFARLRAFLVD
>NZ_CP013067.1|WP_060588312.1|3092837_3093812_-|homoserine-kinase
MSADMRDSVVAYAPASSANLSVGFDVLGAALAPIDGSLLGDRVLVEAGDAPFSLAAVGRFAHKLPDDPKKNILYDCWVGYGEALQKQGLALKPLHMVLEKNLPVGSGLGSSACSVVAALEGLNAFHGHPLGEEALLLLMGEMEGRISGSVHYDNVAPCYLGGMQLIVEEAGIISQGIPAFDEWYWVVCYPGTVVSTAAARAILPAQYRRQDCLTFGRRLAAFVHASYTGQEPLAASVLKDVIAEPYRAALIEGFNEVRDHAAQNGALATGISGSGPTLFSVMKDAAQAERLKRWLELNFVKNEDGFARVCKLDLQGARITGSEL
>NZ_CP013067.1|WP_060586982.1|3093814_3096274_-|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I
MRVLKFGGSSLADPERFLRAAEIAINTHSQSQVALVLSAPAKVTNHLVALVEQTSRGMDASQTLSDIRAIFERVLAGIKSACPALDDASLKARLDEELGSVERMMRGIALLGQCPDNVQARILSRGENLSISFMTGLLQARGIETGFICPEQLLVTDGNFLEAHVNIEASRQRFAAAGLDNQRFYLMPGFTGGNDKGETVLLGRNGSDYSAAVLAACVDAECCEIWTDVEGCYSCDPRLVPDAYLLKTLSYKEAMELSYFGAKVLHPKTVAPVAQFQIPCLIKNSFNPQGPGTLIGPDSGDDGLKVKAISDLSGMSMFNVSGPGMKGMVGMAGRIFAAVSRAGVSIVLITQSSSEYSVSFCIHSYDEEKTRKVLEREFALEFKNQLLEPLEAVSNLAIISLIGDGMRTSKGMAARFFTSLAQASINIVAIAQGSSERSISAVVRAGKVAEAIKACHQNFFGSQQFIDLFMVGVGGVGEALVEQIRRQQPVLAEQGIGLRVVALANSRQMVSCPDGLKLDNWKAQLAEGRGSFTLEEVKRLVEESHIINPVIVDCTSSEAVAAQYADFLAAGFHVVTPNKKANTGSMDYYKALRRTAQQTRRKFLYETNVGAGLPVIENLQNLIKAGDRLRAFDGILSGSLSFIFGKLDEGMAFSEATKIARGNGFTEPDPRDDLNGMDVARKLLILAREAGMPLELADVQVEQALPPGFDVSGDVDSFMARLPEADGWFRDQFAAAQAEGKVLRYVGSIEGGKCKVAIKAVGPDEPLFKVKDGENALAFFSSYYQPIPLVLRGYGAGADVTAAGVFADILRTQNWQQEI
>NZ_CP013067.1|WP_050667978.1|3096501_3097191_-|tRNA/rRNA-methyltransferase
MKLYFVLVSPARPENVGAAARAIKTMGFDAMRIVASQAHEAEQASWVAHGAQEVLASAESFDTLEAALSDVDLAIATTARQRGRYQHYLTPAQIREQIAAKKLEKVAIVFGCEESGLSNEQLGHCDLISYLPLRVSYPSLNLGQAIMLYAWELSPLLDAPEAPADEAVSEAQVRVLKGTTSGLLGELGVSQDEKLHQWAMDRIPMLPQRDLNMLHLLCKDLARRLGLKD
>NZ_CP013067.1|WP_050667979.1|3097310_3099038_+|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase
MKPTLEQEVARTILQRFEAFYSRFLEITRGAKSRFEHCDWLGVQLAGRERIRLYDYHVGATAASIRQMMGEHHVNQELLKRVKGAFSDLLPGCENFEVAESFFNSVYRRIFRHRNIKDENLYIHRFLSRGDNPDLSRLLRRYQSDATALPATLDQILSDFRFTLPYEDSRRDIMDICRHLAESGPALLQERPFTLELLREPFFRNKAAYLVGLVRCDGQVLPFLLPLLNSGEAISVDTVIFEPDIASIVFGFARAYFMVYAPAPALYVAFLRQILPNKADYEIYNAIGCQKHGKTELYRHYLQHLAQSREQFIIAPGIKGMVMSVFTLPSYDVVFKVIKDEFTPPKEVSHEQVKEKYRLVKQHDRVGRMADTQEFTNFEFPLERIHPDLLAELQKVAPSALTLTRDKLVIRHLYTERKMIPLNLYLDQADEQQTRLALEEYGNAIKQLAAANIFPGDMLFKNFGVTRHGRVVFYDYDEICYMTECNFRQIPPPRYPEDELCAEPWYSVGPSDIFPEEFATFLLQKPQVREIMLALHKEMFEASFWQEQQRRIRDGHIEDVFPYRRKKRFKYQRGG
>NZ_CP013067.1|WP_060586984.1|3099106_3101974_+|HAMP-domain-containing-protein
MGITREGRQHAPVSFSLFITLTFALLLGILITLLAFQAYQEAIRMALSQQKQGLRHVRDRVQGAMDEERANSAALLRMIGNDPLQDKQSWAQRRSFLPLWRKILILRPSIEGLFMQWQDGDLFTLSRIDRPAQPPHWLLTEVESDGATQTRILFDDDLNELSREQGPITTPRLGARLFARLQQSQQPLSLPLNKQNDKIDATLATLMATRNGEAVMGLGSGLTVMRRALEQAYGDLDGNLLVIDTRQLRLIYGNHLPAGTLKEGEAPPLASIPSPLLQQLARELARPGALGHPLNRVTLPDGQEWRLHDINTEDNEVSVLLAYPMDRLEQKANRVALTFTLPLLLYFLLALPCIWWCARRISRPLQGLTAELGALGQFRLDAAPLARYPITELDALSVTITRLKDALRHFINIGEAMASRPSFEALLQQLLDESCQVLQARGGAIALQEESGFRILTGRWEAQIITAPDETFTLTQEEILSSTEGRLLPPSEAQWQRLRFLVPDPGPCLLAMEPLKDHLGNWAGVMIFVLPDTDTERLHAGLNLLRALAGNTGSALLTQRLIHEQKALLDALVQLVAGAVDAKSPHTGGHCRRVPELAMALARAASESRQGELATFRPGPREWEAIELASWLHDCGKITTPEYVMDKSTKLETLHNRIHEVRTRFEVLKRDALITALEGGLDASRTAAARREVAQQWRQLDEEFAFVARCNLGQERMDETAIARLGEIAGRSWLRTLDDRLGLSDEELSRHPPPHPLPVREPLLADRPEQRIPYEVPAVRDPRFALQPPPWLYDRGELHNLTIGAGTLTREERYKINEHIIQTIRMLEALPFPQHLKGVPAMAGGHHERMDGRGYPCAVPAGELDLCTRIIALADVFEALTASDRPYKQPKSLSQALTIMQGMVKGGHLDPTLFALFVRSGLWREYGRRYLSAAQQDEVDTQTLLEEESATASVA
>NZ_CP013067.1|WP_050667981.1|3102016_3102418_-|META-domain-containing-protein
MTNRLVLMAALVLGGCSVNSGNSMEQFKSQQWQLAGAKGDTFTLQVAGDRLAGRGGCNRYFGAIEQIDASTLTLGPVGATRMMCVEGDLSAREGEFFGKLGQVKGYAVAGDRLELKSADGAVLLTFESRGAAR
>NZ_CP013067.1|WP_060586985.1|3102669_3103119_+|type-II-3-dehydroquinate-dehydratase
MTQKHRILVLNGPNLNLLGKREPGIYGSQTLADIVADLQQQADTLGVELEHLQSNAESELIGAIHQAMGRVDFIVINPAAFTHTSVALRDALLGVAIPFIEVHLSNVHAREPFRHHSYLSDVAKGVICGLGAAGYEFALTAAVRHLRAA
>NZ_CP013067.1|WP_060586987.1|3103156_3103612_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDIRKIKKLIELVEESGIAELEISEGEESVRISRNFGGQVTAAPQMMMPQMAAPVAQVAAAPVASAPAADATPSGHLVRSPMVGTFYRSSSPEAKAFVEVGQQVNAGDTLCIVEAMKMMNQIESDKSGVIKATLIENGQPVEFDEPLFIIE

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Crispr_ID: NZ_CP013067_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013067_4

3142995-3143105

Orphan

Consensus_repeat	Method
GCTCGGCCAAGCTCCTTGCCTATGGCCAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013067_4

>merge|NZ_CP013067|4|3142995-3143105|CRISPRCasFinder
GCTCGGCCAAGCTCCTTGCCTATGGCCAGCCCTTTGATGCGGCTGCGCCGCATAGGGGTTTCGCCCGCCCACTTGGAGGCGCTCGGCCAAGCTCCTTGCCTATGGCAAGCC

>NZ_CP013067|4|4|3142995-3143105|CRISPRCasFinder
GCTCGGCCAAGCTCCTTGCCTATGGCCAGCC	CTTTGATGCGGCTGCGCCGCATAGGGGTTTCGCCCGCCCACTTGGAGGC
GCTCGGCCAAGCTCCTTGCCTATGGCAAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013067.1\|WP_060587063.1\|3144042_3144480_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_144431400.1\|3149926_3150430_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_082634938.1\|3149082_3149838_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274783
NZ_CP013067.1\|WP_144431399.1\|3146269_3146929_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284995
NZ_CP013067.1\|WP_060587056.1\|3139629_3140484_+\|TIGR03899-family-protein	unknown	unknown	gnl\|CDD\|274842
NZ_CP013067.1\|WP_060587066.1\|3146954_3147995_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP013067.1\|WP_060587043.1\|3134554_3135430_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060587048.1\|3136515_3137109_+\|DUF2796-domain-containing-protein	unknown	unknown	gnl\|CDD\|378529
NZ_CP013067.1\|WP_060587068.1\|3152348_3154073_-\|SLC13-family-permease	unknown	unknown	gnl\|CDD\|223547
NZ_CP013067.1\|WP_158453502.1\|3140760_3141051_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060587050.1\|3137112_3137802_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP013067.1\|WP_050667930.1\|3134053_3134392_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_144431398.1\|3144638_3145349_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060587069.1\|3154076_3155492_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP013067.1\|WP_060587046.1\|3136185_3136458_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060587053.1\|3137795_3139043_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NZ_CP013067.1\|WP_060587067.1\|3151709_3152303_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP013067.1\|WP_082178059.1\|3139062_3139536_+\|DUF3299-domain-containing-protein	unknown	unknown	gnl\|CDD\|378700
NZ_CP013067.1\|WP_060587058.1\|3141800_3142799_+\|lipid-A-biosynthesis-(KDO)2-(lauroyl)-lipid-IVA-acyltransferase	unknown	unknown	gnl\|CDD\|236355
NZ_CP013067.1\|WP_060587070.1\|3155501_3156410_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375

Protein	Function_ID	Function_description	E-value
NZ_CP013067.1\|WP_082634938.1\|3149082_3149838_+\|hypothetical-protein	gnl\|CDD\|274783	TIGR03789, pdsO, proteobacterial sortase system peptidoglycan-associated protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking].	0.00166772
NZ_CP013067.1\|WP_144431399.1\|3146269_3146929_+\|hypothetical-protein	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	1.80968e-10
NZ_CP013067.1\|WP_060587056.1\|3139629_3140484_+\|TIGR03899-family-protein	gnl\|CDD\|274842	TIGR03899, hypothetical_protein, TIGR03899 family protein. Members of this protein family are conserved hypothetical proteins with a limited species distribution within the Gammaproteobacteria. It is common in the genera Vibrio and Shewanella, and in this resembles the C-terminal domain and putative protein sorting motif TIGR03501. This model, but design, does not extend to all homologs,but rather represents a particular clade.	1.27385e-107
NZ_CP013067.1\|WP_060587070.1\|3155501_3156410_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP013067.1\|WP_082178059.1\|3139062_3139536_+\|DUF3299-domain-containing-protein	gnl\|CDD\|378700	pfam11736, DUF3299, Protein of unknown function (DUF3299). This is a family of bacterial proteins of unknown function.	8.38029e-56
NZ_CP013067.1\|WP_060587066.1\|3146954_3147995_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.06242e-19
NZ_CP013067.1\|WP_060587050.1\|3137112_3137802_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.48732e-76
NZ_CP013067.1\|WP_060587069.1\|3154076_3155492_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP013067.1\|WP_060587048.1\|3136515_3137109_+\|DUF2796-domain-containing-protein	gnl\|CDD\|378529	pfam10986, DUF2796, Protein of unknown function (DUF2796). This bacterial family of proteins has no known function.	6.63677e-54
NZ_CP013067.1\|WP_060587068.1\|3152348_3154073_-\|SLC13-family-permease	gnl\|CDD\|223547	COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism].	1.24875e-31
NZ_CP013067.1\|WP_060587053.1\|3137795_3139043_+\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	1.70352e-16
NZ_CP013067.1\|WP_060587067.1\|3151709_3152303_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	5.23136e-134
NZ_CP013067.1\|WP_060587058.1\|3141800_3142799_+\|lipid-A-biosynthesis-(KDO)2-(lauroyl)-lipid-IVA-acyltransferase	gnl\|CDD\|236355	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated.	7.04892e-122

>NZ_CP013067.1|WP_060587058.1|3141800_3142799_+|lipid-A-biosynthesis-(KDO)2-(lauroyl)-lipid-IVA-acyltransferase
MSTPDPVFTPSFEARFLHPRYWLSWLALAVLMLLAFVPVRLRDRLAAALAPLVFRISKKQLYIARTNLAICFPHKSPAERDAIALTSIRVGLKSLLGFGEFTMRSPRYLMSRIQMSGWEHLEAEQAAGRAVILVVPHTWPVDAAGYGLTRRGVPMCTMMKRARNPVFDWHLNRARAKNGCRVYERSAGIKAVIRTIKSGRSFFYLPDQDHGREKSLFAPFFGHSKVTLPALPRLVETSGAKAVPLLACYDEANHCYRLEIEAPFDNYPSGDVMADTCRMNDMVQQQLTRHSGQYMWFLKIFDTRENQEGPDGLYEAGIQRIRKGLSPHPDGV
>NZ_CP013067.1|WP_158453502.1|3140760_3141051_+|hypothetical-protein
MRLRRMGREAFLLDGVSPALRAVASDFLLAQEVTKKAFPRQSDRYAVSLGLVARSDGPPHTARSCAACGCAIIPDGAPDLAPTPRRIEGGANTLPL
>NZ_CP013067.1|WP_060587056.1|3139629_3140484_+|TIGR03899-family-protein
MSELPPPKRDSNNILSSQEQTLRLARSRHIDGMLTKNSDSTFEQRATFRLAAEQATRQRNLETIMVMAQRHCGEIVAGGEPDPDWVTRFLQLAEEIGSVPMQQLWGRIFALEIAAPGSFSIRALTTLKEMTQRDAMLFQRLCALSCNYVGSEERRLLTGLYQGARLLTRAKSSHMGLGKYRLPYNALLQLFELGLLHKGELESGELPAEGLELAFSHQRWRLQGKQSHTKLIYYRLTPVGNELARLLEEPSLEEYLKDLQTLLAQGLVIEVTVTAPPPQEEKGG
>NZ_CP013067.1|WP_082178059.1|3139062_3139536_+|DUF3299-domain-containing-protein
MKRIALGLLALLWMGSAGATQYKTIDWDALIPPAERNAPPPVVNHEGNPMSAPQPVGGVVKELDQKPVRLPGFVVPLEGDAKTITAFLLVPYFGACIHVPSPPTNQVIYVRFPKGAPVDDLWDAIWVKGTMKVVSSSHEMANASYAMEAVEVAPYEE
>NZ_CP013067.1|WP_060587053.1|3137795_3139043_+|ABC-transporter-permease
MLRLALQSLWARRLTAGLTLLAVAISVTLLLGVERVRTQARDSFASTVSGTDLIVGARSGQVNLLLYSVFRIGNPTNNVGWDAYQRISALRGIAWTTPLSLGDSHKGFRVLGTNGDYFKYLRYGRQQPLTLASGRPFERPFEAVLGAEVARKLGYRLDQSIVIAHGEGNTSFTQHDNLPFRVVGILAPTGTPIDRTVHVPLAGIEAIHLGWETGRHSKAVSAEQALAQDLPPKTITAFMVGLNQRILAFQLQRTINTWPSEPLMAILPGAALQELWGLMSVAETALSVIAGFVVVAGLIGMLTTLLAGLNERRRELAILRSLGASPRHLFALLTLESLAITSLGILAGLGLLYGAQALAAPLLSSHYGLQFPLALPTLREWQLLGLVWLAGLVMGLLPAWRAYRYSLSDGMSIRF
>NZ_CP013067.1|WP_060587050.1|3137112_3137802_+|ABC-transporter-ATP-binding-protein
MSRTVVTIRDLGFAWPGHDPVLEIPELTLLEGERLFIKGPSGSGKSTLLGLLAGIQTVNHGTLEVLGQSLARLSSRARDGFRAAELGYIFQQFNLLPYLGVVENVTSALTFSPRKRARLSAPPEAEARRLLRELQLPDELHSRPVHALSIGQQQRVAAARALIGAPPLVIADEPTSALDSDNRAAFIELLFEECDKQGSTLIFVSHDPGLEPLFPRVEDLRQLNRRSQC
>NZ_CP013067.1|WP_060587048.1|3136515_3137109_+|DUF2796-domain-containing-protein
MKRLALMMAAVAFSAAAHHDDHANAGHGAHEHGHGQLNLVLDGDQLMLELTAPAADLIGFEHAPRNDTEKARMDQALARLKSAEGLFVLTPAAGCTLTGQQVQAGHEEHDHDADDHDHDHDHDHDHDHDHDAADHHEGHADMGATYTFTCQQPAALKGIEASLFTLYPSLEKLTVQGLIPGGQVAGELTPGNRILGW
>NZ_CP013067.1|WP_060587046.1|3136185_3136458_+|hypothetical-protein
MFKLRALLWIWLSGWLWMQPALAVHQLDSLAPDHPHLCQLCAVHLDGKWLPGAAVAAPLPQLPTSYALPDRIASPTLAAPGAYSIRAPPR
>NZ_CP013067.1|WP_060587043.1|3134554_3135430_+|hypothetical-protein
MKWFPVLLTMTLAPLAPAEPLTLQWQWHSQDGNRHHITFSADEGALDASRREMVTLDRALNFPLETLFAQMGEKLQGTLAEINRLSPEGAVKFDNLEQAFALRDQSPQSVMFWQAYHQYQEDAFYALRITPCIHPTDRRLPCVRPNYSQLFYQLKHALQPLARQFAQSDTAKTVALLQEWLDSIPSPNEQVDHFAPPLQALQQNRADSDEKALLMAALLAERLPDYALSIIYPDISVGSVSPAWLAITADSGLQGETVQINSQPHVLLTGSPVLVQQMMLSKIPLVSEPLY
>NZ_CP013067.1|WP_050667930.1|3134053_3134392_-|hypothetical-protein
MGTWGYGVLLLAVVAPAMAGSVTVTKGSEKVDAFALRDQLAREHEWQEWLRHQEALKWLEVLPVNCELVSKADGSYRCGGEWYREYKQEGKELYIRGEPGSSSPRPAAPPAH
>NZ_CP013067.1|WP_060587063.1|3144042_3144480_+|hypothetical-protein
MKMRLYLFLLLTLGPSTLWADDAVRIRQFEEDIRILKRTVIDQSERIDALERQLSTSAPASTPGKRSPAPAGTVTGGWHSPANWGRVKDGMSQSQVVSLLGQPTSIENIGPYRTLFYRGEVNGSFVSGNAQLTDDRVWQVNEPVF
>NZ_CP013067.1|WP_144431398.1|3144638_3145349_+|hypothetical-protein
MNIDIMAGTFLLYIAIIYMTKSLAFLAVVGKNSNQRLSTGKQYSIFSLFTVDYLLSSIFKERVDFYDVKDKNKSKSCLIVAFNYVNVAFSFVFLFLAYFSVSMNWFTETVAWLCAIRFISRCIEITVAFARDVITKPAVERVKGKLTKYDRMQLALKSYIEVFVLGASVYVLTLPSDGISLITAVNMSFGVGTFTNTSSAISSMGLQTLILLVYMQVFTTLTLVVMAFAIYIGRNK
>NZ_CP013067.1|WP_144431399.1|3146269_3146929_+|hypothetical-protein
MAGNVIKGALSMGVKLDINLDGASETTLNTKLEKLNISEFFSDKISKEIVLIFDDLERSEISTVEVLGFINELVENAKVKVILIANEKVLIEGSNGSVYRDFKEKVIGKTFEIKHDFSSILCDFLKGYSVSEYKEVIQSVYDQSKFKNLRKFKQSIDDFEYLIRNIDEIYKKNDQFYKDLVRCFFALSIEIKKGSLSEEELRKNIPFKKSTDCTDLVIA
>NZ_CP013067.1|WP_060587066.1|3146954_3147995_-|IS481-family-transposase
MTTNEKVARRKLSLLELAKELNNVSKACKLIGYSRQQFYEIRRNYQTYGAEGLLDKLPGCKGAHPNRVAPEIEQAILDYSLARPTQGPLRVAQELALQGINVSAGGVRGVWQRHDLLSKHDRLLRLEKTHREQTIELNDEQIRLLERFSPEFRERQIEVHYTGELVAVDTFFVGALKGVGKVYLQTVLDCYSRHAWGRLYTSKLPVTSVHVLNETVLPFFEAHEARVYTILSDNGREFCGRPDQHPYELFLQLEGIEHRTTKVRRPQSNGFIERLHRTLLDEHFRIKGRTTWYESVEQMQTDLDSYLEHYNTQRPHQGRMMEGQTPYSMFKKGLKLIPKEVRTKVA
>NZ_CP013067.1|WP_082634938.1|3149082_3149838_+|hypothetical-protein
MPSKDLVPAFIQKGSEITGGATGAALGFLAAGPLGAALGGAAGTIVTQTGGVVADFVERTLSHRETVRAAGSVSLSLGKIKERLDEGCEPRDDDFFRIRTGYRPKAEDLFEAMMIKSKNQYEEHKVYFYANLFANACFDENLSADIVSWFMLVLDKLTFSHIETLNEFVVLGSNSKWEWGHLDIIAEHSHVVAAQLEELKGMRLLSLDHWGDTPIEATPISVQFINAIGFSNPFDSQYDHVIRTKNGAAKI
>NZ_CP013067.1|WP_144431400.1|3149926_3150430_+|hypothetical-protein
MKDTLRYLSIVLSTISVISLLQHVGNVGVSSIFHDFISYYRYVAYEVFGLIGRLFSIDIPPTLMDVWTLSFIGAGAYVRTPNIEGSRLLRKYDTSKFPSYWKFIYFLLMGFTLVGLSIVFSALQPQIYVDDELGESYALSRRALKNVLVIVAGVVVFFVLNAYAPSA
>NZ_CP013067.1|WP_060587067.1|3151709_3152303_-|adenylyl-sulfate-kinase
MNNIVWHPHAVTKQRRSDAKGQRPLVIWFTGLSGAGKSTLAGALEEALAGLGKHTYLLDGDNVRHGLCGDLGFDEGARRENIRRVGEVAKLMVDAGLIVLTAFISPYREERDLVRGLLGEGEFVEVFVDAPLSVCEERDPKGLYKKARAGEITNFTGIDAAYEAPLNPEVHLHNDGAPVPALVEALLGALRQRGLID
>NZ_CP013067.1|WP_060587068.1|3152348_3154073_-|SLC13-family-permease
MTWQQSLVLGLLVALIVLLIQGRLRPALLFSGAVLVTYLVGLADIQGVVAGYTNGSLLTLVLLLLVSLAVEKSRLMSWFAGAVGRGSFTQVLTKVWFSTAFLSAFVNNTAVVASMLGAVKRNPEHSASRLLLPMCFAATFGGVLTLIGTSTNLIVNSFLEKMGARPLGMFDFFMVGAGTLLTGWIAVMLFARRLPEQEGEFDRSQGYFLEAKVSAGSPLAGRSVKENGLRSLKSLYLAEIIRGDQVICPVQPEQALHEGDMLLFCGDVESVGVLQEMRGLELYGEHRLNGQHLVEVIVSHSSRLVGQTIRDAEFRTHFDAVVLAVRRGESQLTGGLGQIELHAGDTLLLAPGPRFAGNKSLSREFVVVSGIEASTRLDTRRSAAVVGGFAAVLAASVFELLPLFKGLLIMLVLLLATRILTLDEIRRRFPLEIWLVVGGALALSDQLEKTGLANVIARWLMGEFNGASPLIAFIGIYLFTLVLTELMSNNAAAALAFPMGYQLALSMDVSTMPFILAVLFGASSSFILPYGYQTNLMVYSAGNYRMQDYLKLALPVSLAYSIGVIIMVPLLFPF
>NZ_CP013067.1|WP_060587069.1|3154076_3155492_-|sulfate-adenylyltransferase-subunit-CysN
MNSYVKSALESEGIEAYLKAQEHKSLLRFLTCGSVDDGKSTLIGRLLHDSQQIYEDQLKALESDSQKLGTTGEKLDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILIDARRGVLDQTRRHSFIASLLGIKQFLVAVNKMDLVDFSQQRFDEISRDYRAFASQLDVESIQLVPVSALDGDNVVNSSANMPWYQGEPLLALLESAEVEQDLARHPVRLPVQYVNRPNLDFRGFAGTLASGILRVGDRLAVLPSGKECRVTRIVTFDGDLDHALPGQAITLTLADEIDISRGDLLVAAEQQSAVSRRLLAHIVWMGESELKSGRSYDIKLATRKTRGEVATIRHRIDINNLEEHAADELKLNEIGLCEVSLTEPVGFDPYREIRDTGSFILIDRLTNVTVGAGMIVQGLDEVAAKGSASEFELELNALIRKHFPHWQALDISKE
>NZ_CP013067.1|WP_060587070.1|3155501_3156410_-|sulfate-adenylyltransferase-subunit-CysD
MDRERLTHLKQLEAESIHIIREVAAEFDNPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTDWKFKEMIRFRDQTAEKFGLDLIVHKNPEGLAMGINPFDHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERVYSFRDKHHRWDPKNQRPELWRTYNGQVNKGESIRVFPLSNWTELDIWQYIYLENIDIVPLYFAAYRPVVERGGIKIMVDDERMPLSADDVVREELVRFRTLGCYPLTGAIESSAASLTEIIEEMLLTTSSERQGRLIDHDQSGSMEQKKRQGYF

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Crispr_ID: NZ_CP013067_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013067_5

3588005-3588109

Orphan

Consensus_repeat	Method
CTACGCCCCTGTCAAAATGGTGGGTGTCCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013067_5

>merge|NZ_CP013067|5|3588005-3588109|CRISPRCasFinder
CTACGCCCCTGTCAAAATGGTGGGTGTCCCAGTGTCATCTCCTCGGCAGTGATACCTCAAGTCCAGCAGACTGCTACGCCCCTGTCAAAATGGTGGGTGTCCCAG

>NZ_CP013067|5|5|3588005-3588109|CRISPRCasFinder
CTACGCCCCTGTCAAAATGGTGGGTGTCCCAG	TGTCATCTCCTCGGCAGTGATACCTCAAGTCCAGCAGACTG
CTACGCCCCTGTCAAAATGGTGGGTGTCCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013067.1\|WP_060587318.1\|3578351_3580487_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957
NZ_CP013067.1\|WP_060587323.1\|3584299_3585532_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP013067.1\|WP_082634881.1\|3599634_3600576_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|197670
NZ_CP013067.1\|WP_050666497.1\|3577900_3578191_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060587319.1\|3580616_3581258_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013067.1\|WP_144431413.1\|3589903_3590224_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|365804
NZ_CP013067.1\|WP_060587329.1\|3598485_3599526_+\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NZ_CP013067.1\|WP_060587317.1\|3576700_3576919_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_144431412.1\|3585551_3586508_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060587327.1\|3596799_3597723_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP013067.1\|WP_060587321.1\|3582195_3583125_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP013067.1\|WP_060587324.1\|3586819_3587767_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060587328.1\|3597730_3598294_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013067.1\|WP_060587322.1\|3583114_3584233_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP013067.1\|WP_060587320.1\|3581254_3582199_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP013067.1\|WP_144431414.1\|3600667_3602257_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP013067.1\|WP_060588326.1\|3595504_3596602_-\|agmatine-deiminase	unknown	unknown	gnl\|CDD\|184135
NZ_CP013067.1\|WP_060583260.1\|3592285_3593326_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP013067.1\|WP_060587326.1\|3588726_3589674_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013067.1\|WP_060588325.1\|3593520_3595224_-\|amidase	unknown	unknown	gnl\|CDD\|180626

Protein	Function_ID	Function_description	E-value
NZ_CP013067.1\|WP_060587322.1\|3583114_3584233_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.90879e-37
NZ_CP013067.1\|WP_082634881.1\|3599634_3600576_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.50428e-19
NZ_CP013067.1\|WP_060587319.1\|3580616_3581258_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.15962e-16
NZ_CP013067.1\|WP_060587329.1\|3598485_3599526_+\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	4.57892e-172
NZ_CP013067.1\|WP_144431413.1\|3589903_3590224_+\|hypothetical-protein	gnl\|CDD\|365804	pfam00005, ABC_tran, ABC transporter. ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in CFTR, or belong in different polypeptide chains.	0.00486389
NZ_CP013067.1\|WP_060587321.1\|3582195_3583125_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.364e-92
NZ_CP013067.1\|WP_060587327.1\|3596799_3597723_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.74148e-52
NZ_CP013067.1\|WP_060587320.1\|3581254_3582199_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	4.99266e-40
NZ_CP013067.1\|WP_060587318.1\|3578351_3580487_+\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	2.67043e-59
NZ_CP013067.1\|WP_060587328.1\|3597730_3598294_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.31083e-11
NZ_CP013067.1\|WP_060587323.1\|3584299_3585532_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.53472e-154
NZ_CP013067.1\|WP_144431414.1\|3600667_3602257_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP013067.1\|WP_060588326.1\|3595504_3596602_-\|agmatine-deiminase	gnl\|CDD\|184135	PRK13551, PRK13551, agmatine deiminase; Provisional.	0
NZ_CP013067.1\|WP_060583260.1\|3592285_3593326_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.1127e-19
NZ_CP013067.1\|WP_060588325.1\|3593520_3595224_-\|amidase	gnl\|CDD\|180626	PRK06565, PRK06565, amidase; Validated.	0

>NZ_CP013067.1|WP_060587324.1|3586819_3587767_-|hypothetical-protein
MTIARSRQISLQDTPYYHVVSRCVRRAFLCGEDAHSGQSYEHRRQWVVDRLGQLSRLFAIGICAYAVMSNHYHLVLRVDAEQAQGWSEREVAERWAGLFQWPLLVRRWYQGDALIEPELSVVQGLIEEWRGRLYSISWFARLLNEGLARQANQEDSCKGHFWEGRFKSQALLTESALLACMAYVELNPIRAKLADRPEESDYTSISQRLGRAQTTELPPLLLPFAKQNEHESLPYTFSDYLALVDWTGRAIRDDKRGHIPAALSPILDRLQLDGEDWLKQVKLFKRSGIRAIGHCVARERYAHHCGQRRCHQPAY
>NZ_CP013067.1|WP_144431412.1|3585551_3586508_+|hypothetical-protein
MMWSRQLALIAALCVTPLLQAAEPRHFIYTSSGELAAAQPLLARSDIDGAQIVYSWRALEPTKGHYDFSAIERDLKTLQASGKQLFIQIQDRFFEPGARYVPDYLMQDPAYHGGLAPQFDNPGEGKPVGSGWVARQWDPAMRARYQALLAALARQFDGRVYGVNLPETAIDPDEKRPPEGFTCDRYFEGEMDNLAAARRLFTRSHLVQYVNFWPCEWDNDHDYMGRLFAFAHANRIGLGGPDIVPHRKAQMKNAYPLFHRYKGKLPLVAMAVQEPTLTYTNPASGKPFTKKEFVAFADDYLGADIIFWSTSSPWLSSH
>NZ_CP013067.1|WP_060587323.1|3584299_3585532_+|DEAD/DEAH-box-helicase
MSTPFAELGLSSRLQQTLCELGYRVPTPIQERAIPLILAGRDLLAGAQTGTGKTAAFVLPLIERLLKAPAGEARPVRTLVLVPTRELAVQVQESVVRYAKGTTLTSTLVYGGVSIAAQVEALKTGVDILIATPGRLLDHLRHGAVSLSAVTHLVFDEADRMLDMGFMDEITELLKHLPAARQTLLFSATCDDNLFSLSKVLLQDPELIEVATRNTTAAEVEQRVYAVDSERKVALVQHLIKVKEWAPTLIFCRTRQGADKLAQRLTQGGINALAFHGDLTQGAREKVLIEFRAGTLQALVATDVAARGLDISDLNYVINMEFPFIAEDYVHRIGRTGRAGNKGLAITLFSPEDTPLMEKVEAVLDTRLPQQWFPGFEPDLTREAPSKGRSSKGALKQKARRQALGKGSKR
>NZ_CP013067.1|WP_060587322.1|3583114_3584233_+|ABC-transporter-permease
MGLRMLAIIIKEFQQLARDRMTFAMIVMIPLVQLMLFGYAINTDVRQLPAGLVDLSGSSQGRALVQAIEASQVVHFTRTYASAAEAEAAITRGEVKGVLYLPPDFASRLMRRPESGGHAMPSPLGQWLVDGSDTVVASTIRTLRKMPIDEVLGRPVAEAEPTLEVVQYFNPEQRTVVNIVPGLLGVILTMTMVLFTSAAIVREREHGNMEFLITTPVRPLELMLGKIAPYVLVGFIQVAIILGAGHLLFAVPVRGGLDSLALASLLFICASLTLGLVISTLAQTQLQAMQMTVFILLPSILLSGFMFPYEAMPVAAQWIAEALPATHFMRMVRAIVLRGAEVSELGRDALWLLGFTALGLLTASRRFTKHLD
>NZ_CP013067.1|WP_060587321.1|3582195_3583125_+|ABC-transporter-ATP-binding-protein
MSELAIETRGMSRSFGDLKAVDSLSLAIPRGTIYGFLGPNGCGKSTSIRMLTGLLRPTSGEIRVLGESLPGAEEPLRRRIGYMTQKFSLYENLTVAENLGFVARIHGLGGREAKARITELIALYELGGRERQMAGSMSGGQKQRLALAAATLHRPELLFLDEPTSAVDPENRREFWERLFDLCAAGTTILVSTHYMDEAERCHALAILERGVKRADGAPQALMAAMGARVIEVAGETLRPLRQRLTQAPEVLSAAQIGSRLRVLVRSDLPDPLGWLAARVEGRPLAEVRPSLEDVFVTCTGERGGHHGA
>NZ_CP013067.1|WP_060587320.1|3581254_3582199_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MRAVSLLLLALLAGCDSPAPHIYGTVERDRLTLTAPVGEQIATQPVREGERVKAGQVLLTLDSRSARAEVDRRQAELAQAEARLAELIKGARSEALGRARAALDGAEAALREAELRYGRTERLLKTQVLTVADFDAARAARDGARASREQAAQSLSELENGTRSEQIDQARAAVAAAKAALTQAHKALADLTLSAARDARVELLPWRVGDRVAAGSQLVGLLAEDAPYVRVYLPAPYLTRLAPGSRVQIRVDGRADPIPGRVRTIRSEPAFTPYYALNERDRARLMYLTDIDIEGGAELPAGLALEVILEEPTP
>NZ_CP013067.1|WP_060587319.1|3580616_3581258_+|TetR/AcrR-family-transcriptional-regulator
MQSTPGRPKGESDARIRLIQAALNLFSRQDYRQVSTRALAREAGVDAALIRYYFGSKGGLFEQMVRETLSPVLQRLRQLPREESPSDLAGFMALYYDIMLPHPGLPRLVVRVLQETPGGEAHRAMLSVFDEIIEHSRLGFDRLLGSRLENGTDPELARLSLVSLMVFPLIAPPVLMARFGLSLTPEGMRPLIEHNTRLLTEGLCPPAATRSHP
>NZ_CP013067.1|WP_060587318.1|3578351_3580487_+|AsmA-family-protein
MKKLLILPLTLLLALFVGGALLSTIDTEQFKPLLVEQVRHQTGRELRLDGPIGWRFWPSLGLTVDRAALRNPAGFSEPDLIRLERASASVALLPLLSHRLEIGEIRLQGAHLLLETRKDGRNNLEQMGPAPEAATGKEAPHNGEATTAPGATPSDAPAWQIRLGGIALEQASALILDGRTGRRLTLDNLDLTLDGADGEGWMPLTLSLLAKEQAAEYRLSGQGELRLGQPMATTALRRLSVEGSLQRGPLKIEAFSLKAEHLALATPSPLTLTLKGGDGVRQADLKLTTTLSADGEGKTVRLGGSHLTATLEGAGVPRTPLALDLNGDIAYDSAARSLSLTILKARSGDLTLGGEAFVTLQETPLVRFNLQGGAFGLDEWLATTAPAAQESTTDKTPATVPQGATQPREAQAQDEPDLSALKGVNLDGQLRLAGLTYAGLTLTQPEIALTLDKGLLTLKRFKSGFDQGHLNANGQLDARQHPASYRLNAQGKDVQIRPLLQQLAQSDLLSGRTSLSLAVQGHGLSQVALRRGIAGQAHLKVEDGALHGVNLPEMIREAKATLKGQRAEYVKEERKTDFSALTASFQLGGGKARSNDIQLFAPALRVHGSGETDLVSEGLDFLFNTSVVGTSKGQGGRDVGELAEVTIPVRITGSWSQPSYALDLKALLQNNKLLEEKARKEAERGINKLLGDKGDPALKEAADKLLKGLFN
>NZ_CP013067.1|WP_050666497.1|3577900_3578191_-|hypothetical-protein
MRISLLVVSALLMAGCSPATDREADMARLLEICKQQALPNTLAAGEKGDAQRLADEREQLEARFADEDNRAWLETRHRDSELEQTCLEETLERLEK
>NZ_CP013067.1|WP_060587317.1|3576700_3576919_+|hypothetical-protein
MNHEEDLLQRLARFERRIKRVAGPRPERALPRARGKTLSLTQWLLPALVMVMSGALIQEIIWQIGNASDRLS
>NZ_CP013067.1|WP_060587326.1|3588726_3589674_-|hypothetical-protein
MTIARSRQISLQDTPYYHVVSRCVRRAFLCGEDAHSGQSYEHRRQWVVDRLGQLSRLFAIGICAYAVMSNHYHLVLRVDVEQAQGWSEREVAEHWAGLFQWPLLVRRWYQGDTLIEPELAIVQGLIAEWRERLYSISWFVRLLNEGLARQANQEDGCKGHFWEGRFKSQALLTESALLACMAYVELNPVRAKLADRPEESDYTSISQRLRRAQTTELPPLLLPFAKKDEAKSLPYTFSDYLALVDWTGRAIRDDKRGHIPEALSPILQRLQLDADDWLKQVRLFKRSGIRAVGHGVARERYAHHCRQQRCHQPTH
>NZ_CP013067.1|WP_144431413.1|3589903_3590224_+|hypothetical-protein
MTTTSGLDTIYKERRRFIILGLTGRTGSGCTTLANLLTHDTFGEFNPPRPKSSLFINDEERKYKVVYDYLKMQWVKFYHIRMSDIVSTFILELSFEKFGNASDRLS
>NZ_CP013067.1|WP_060583260.1|3592285_3593326_-|IS481-family-transposase
MTTNEKVARRKLSLLELAKELNNVSKACKLIGYSRQQFYEIRRNYQTYGAEGLLDKLPGCKGAHPNRVAPEIEQAILDYSLTRPTQGPLRVAQELALQGINVSAGGVRGVWQRHDLLSKHDRLLRLEKTHREQTIELNDEQIRLLERFSPEFRERQIEVHYTGELVAVDTFFVGALKGVGKVYLQTVLDCYSRHAWGRLYTSKLPVTSVHVLNETVLPFFEAHEARVYTILSDNGREFCGRPDQHPYELFLQLEGIEHRTTKVRRPQSNGFIERLHRTLLDEHFRIKGRTTWYESVEQMQTDLDSYLEHYNTQRPHQGRMMEGQTPYSMFKKGLKLIPKEVRTKVA
>NZ_CP013067.1|WP_060588325.1|3593520_3595224_-|amidase
MVDVTEVSIAELRAALEAGRTTAVELVKAYLARIEAYDGPETQTRLNALVVPNPDALKEAQASDERRARGETLGPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQRGVYGRAESPYNADYLTAPFASGSSNGAGTATAASFCAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVVVADDADTRGDLWRLQPWVKIPKASEVRPASYLELAAKADALKGKRLGVPRMFINKDELAGTSDNPGIGGPTGQRIHTRDSVIALWEQARQALEAAGAEVIEVDFPLVSNCEGDRPGAPTVFNRGIVSPEFLNDELWELSGWAFDDFLRANGDPKLNKLADVDGPQIFPHDPGTLPNREGDLAAGMDEYVNMAKRGLKRFDEIASVPDGLRGLEQTRKLDLEDWMDGLKLDAVLFPTVADVAPADADVNPASADIAWSNGIWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNKLLRFASAFESTGSKRMVPPRTPPLG
>NZ_CP013067.1|WP_060588326.1|3595504_3596602_-|agmatine-deiminase
MSIKTINSTPAADGFTMPAEWAHQQAVWMIWPFRPDNWREAGRFAQATFAKVADAIGGATPVFMGVPAQFMEQARAIMPAHVTLVEMNSDDCWARDTGPTIVTNAAGECRGVDWGFNAWGGHKGGLYYPWDQDEKVAAQMLEQHGMDRYDAPLILEGGSIHVDGEGTCLTTAECLLNENRNPHLTKEQIEAHLRDYLGVTSFIWLDEGVYMDETDGHIDNMCCFVRPGEVALHWTDDETDPQYARSVAALKVLEAAVDAKGRKLKIWKLPQPGPLYCTQEESAGVESGTGVPREAEGRLAGSYVNFLITNDRIVYPLLDAATDGQAQRILEEIFPDHTVVGVPAREILLGGGNIHCITQQIPSGK
>NZ_CP013067.1|WP_060587327.1|3596799_3597723_+|LysR-family-transcriptional-regulator
MKLHQLDLNLLLALDALMTQGSVTRAAESLYISQPAMSHALARLRSAFGDPLLVRTPQGMVPTPRAQRLHSGVRQALRLLEQQLTDEEQFDPHTSLRRFVLCTTDYVECVLVPPLIQRLKDLAPGVSIEIRILRDRLPEAELASGEIDLVLGFDEYMQVPGYLGKETWLTEPLAGLARSDLGGMGERLELEQLIGMAHVFHSPLGTSETSLDRWLESQGLSRRISVNSQSYMSAAAIACQTDHLLVLPSKVADLLAGHWPLRRLHLPEDVPGYHLNCVWHPALGQHPALLWLRTLMKGLVAEGEQRP
>NZ_CP013067.1|WP_060587328.1|3597730_3598294_-|TetR/AcrR-family-transcriptional-regulator
MRSAEFDREQVLTNAMEVFRSKGYAKATMQELVAATGLHPGSLYGAFGNKRGLLLAAVDHYVESRRQQRRDLMAGCSPLAGIRAYLIHLSDELIQCTCLVTRTVMELDQDEEVRERLARVYQDLESDLAVALRAAIEQGELPAAEVATLSAYLLVGGQGLVTFAQCRRDPALSLAVVEQLLAGLAAR
>NZ_CP013067.1|WP_060587329.1|3598485_3599526_+|alkene-reductase
MTSSLFTPFKLNDTLTLANRIVMAPLTRCMAGPGLVPTEQMAAYYGRRADLGLIISEAVIIRPDGQGYPNTPGLFTPEQIQGWRLVTDAVHAKGGKIFAQLWHVGRLSHPFFHQAEVLGPSAVAFEGTVPRMRELTYQVPRALTVPEIEQLVQDYAQAAANAIDAGFDGIEIHGANGYLIDQFLHHDSNRREDEYGGSPQKMARFALEVVDAIAARIGGERTALRLSPGAYVHLKGDVRDRAVFDHLLSELDNRTLAYLHVGIFDDALTFDYLDGRASDYIRAHYRGTLVGVGQLTPQSAAEAVAANRFDLVAIGRPLIANPDYVERVRNGAELVPYSEALLPQLI
>NZ_CP013067.1|WP_082634881.1|3599634_3600576_+|GNAT-family-N-acetyltransferase
MDSRSLRALSRELVRELGLLSQQCGTLTLSPVEAHLLIELESGPATNQQLADKLRIDKSNTSRPLARLAERGLIAWQDHPRDGRSKHATLTERGRSELEGLHAEMDAQVEAALAQLTGEERDTLWRGTQLYRSALSRARRQQGYWIRPIEVEDNRAIAAVIRTVSTEYGLTTDKGYGVADPDLDRLYEVYQGVDRCYWIVEGPDGQILGGGGLAPLQGGDGMTCELQKMYFLPALRGLGLGKRLVLQALAQARQMGYRRCYLETTASLREATALYESLGFEHLPGPLGHTGHGDCEICMLLSLDPALEAPAEE
>NZ_CP013067.1|WP_144431414.1|3600667_3602257_-|peptide-chain-release-factor-3
MMSSEFLSEVSKRRTFAIISHPDAGKTTITEKVLLFGQAIQRAGTVKGRGSGQHAKSDWMEMEKQRGISITTSVMQFPYGDSLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVESELNIMCAPITWPIGCGKLFKGVYHLYKDETYLYQTGQGHTIQEVRIVKGLDNPELDTAVGEDLASQLRGELELVKGASHEFDHEAFRAGELTPVFFGTALGNFGVDHMLDGLTEWAPTPMPRKAESREVVATEEKFSGFVFKIQANMDPKHRDRIAFMRIVSGTYTKGMKMRHVRLGKDVNISDAVTFMAGDREQAVEAVAGDIIGLHNHGTIQIGDTFTQGEDLKFTGIPNFAPELFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPLMNNDLIVGAVGVLQFDVVVSRLKSEYNVEAIYEAVNVATARWVEGSDVKKFEEFKRKNEPNLALDGGDNLTYIAPTMVNLRLAQERHPDVNFRQTREH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

33043 : 98619

Bacillus_phage(25.0%)

tRNA,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060583260.1\|33043_34084_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	6.3e-72	41.8
WP_144431304.1\|34156_34945_+	hypothetical protein	NA	NA	NA	NA
WP_144431437.1\|34933_36138_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	3.5e-114	70.5
WP_144431305.1\|36395_36836_+	hypothetical protein	NA	NA	NA	NA
WP_060583269.1\|38239_38746_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_060583270.1\|38766_39201_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_082634732.1\|39639_41847_-	primosomal protein N'	NA	NA	NA	NA
WP_050665360.1\|41996_42212_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_060583272.1\|42309_43743_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_050665362.1\|43920_45165_+	malate dehydrogenase	NA	NA	NA	NA
WP_060583275.1\|45218_46493_-	two-component system sensor histidine kinase RstB	W8CYF6	Bacillus_phage	2.4e-12	25.6
WP_060583277.1\|46496_47204_-	two-component system response regulator RstA	W8CYM9	Bacillus_phage	2.2e-28	31.7
WP_060583279.1\|47273_48518_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060583281.1\|48520_49966_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_050665367.1\|49962_50688_-	response regulator transcription factor	W8CYM9	Bacillus_phage	5.8e-32	35.9
WP_060583283.1\|50899_52063_-	acetyl-CoA C-acyltransferase FadA	NA	NA	NA	NA
WP_060583285.1\|52084_54232_-	fatty acid oxidation complex subunit alpha FadB	NA	NA	NA	NA
WP_060583287.1\|54437_56378_-	acetoacetate--CoA ligase	NA	NA	NA	NA
WP_050665371.1\|56566_57889_+	Xaa-Pro dipeptidase	NA	NA	NA	NA
WP_060583290.1\|57885_58497_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	7.3e-20	33.5
WP_050665373.1\|58528_59986_+	potassium transporter	NA	NA	NA	NA
WP_050665374.1\|59994_60519_+	menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA	NA	NA	NA
WP_060583292.1\|66246_68814_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060583294.1\|68964_70020_+	lipopolysaccharide heptosyltransferase II	NA	NA	NA	NA
WP_060583297.1\|70016_71279_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_050665647.1\|71347_72604_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_050665646.1\|72640_72928_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_060583299.1\|72942_73386_-	PTS transporter subunit EIIA	NA	NA	NA	NA
WP_050665644.1\|73620_74640_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	5.9e-22	27.3
WP_060588185.1\|74938_75214_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_144431437.1\|75234_76439_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	3.5e-114	70.5
WP_060583301.1\|76854_77277_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_050665652.1\|77421_77952_+	chorismate lyase	NA	NA	NA	NA
WP_060583302.1\|77948_78818_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_060583303.1\|78854_79685_-\|protease	rhomboid family intramembrane serine protease GlpG	NA	NA	NA	NA
WP_060583305.1\|79681_80005_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_060583306.1\|80092_80794_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-13	28.3
WP_060583308.1\|80804_81581_-	ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	1.3e-10	25.7
WP_060583310.1\|81577_82846_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_050665636.1\|82845_83772_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA
WP_050665635.1\|83838_84960_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060583312.1\|85377_86382_+	substrate-binding domain-containing protein	C6ZCU4	Enterobacteria_phage	1.2e-32	33.2
WP_060583314.1\|86438_86966_-	cobalamin adenosyltransferase	NA	NA	NA	NA
WP_158453510.1\|87030_87933_-	DUF5610 domain-containg protein	NA	NA	NA	NA
WP_060583316.1\|88645_88909_-	hypothetical protein	NA	NA	NA	NA
WP_162491591.1\|89064_90159_+\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_060583320.1\|90388_91597_+	4Fe-4S binding protein	NA	NA	NA	NA
WP_082634733.1\|91603_92293_-	hypothetical protein	NA	NA	NA	NA
WP_060583321.1\|92381_92759_-	hypothetical protein	NA	NA	NA	NA
WP_060583324.1\|92934_94149_+\|transposase	transposase	NA	NA	NA	NA
WP_060583326.1\|94630_95578_-	hypothetical protein	NA	NA	NA	NA
WP_144431307.1\|97212_97497_+	hypothetical protein	NA	NA	NA	NA
WP_060583260.1\|97578_98619_-\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	6.3e-72	41.8

DBSCAN-SWA_2

638709 : 645729

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060588208.1\|638709_639456_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.7e-74	56.5
WP_060584074.1\|639460_640078_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.1e-35	47.0
WP_050667357.1\|640074_640656_+	DedA family protein	NA	NA	NA	NA
WP_050667358.1\|640665_641520_+	peptidoglycan DD-metalloendopeptidase family protein	I2E8W3	Clostridium_phage	4.8e-09	34.1
WP_060584075.1\|641560_642544_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.7e-34	37.2
WP_005351739.1\|642760_643033_+	DNA-binding protein HU-alpha	A0A249Y2G7	Serratia_phage	7.2e-12	46.5
WP_050667360.1\|643140_643557_+	hypothetical protein	NA	NA	NA	NA
WP_050667361.1\|643608_644028_-	DUF4426 domain-containing protein	NA	NA	NA	NA
WP_060584082.1\|644056_644347_-	YggU family protein	NA	NA	NA	NA
WP_050667363.1\|644346_644898_-	YggT family protein	NA	NA	NA	NA
WP_060584084.1\|644907_645729_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	6.2e-22	30.9

DBSCAN-SWA_3

1046497 : 1055958

Hokovirus(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060584552.1\|1046497_1049257_+	TMAO reductase system sensor histidine kinase/response regulator TorS	A0A1V0SGX0	Hokovirus	1.5e-43	34.7
WP_060584554.1\|1049258_1049723_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_050666073.1\|1049897_1051151_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	7.3e-99	52.7
WP_050666074.1\|1051268_1051718_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_060584560.1\|1051717_1052827_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.7e-46	34.2
WP_060584562.1\|1052828_1053476_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.7e-20	37.0
WP_060584564.1\|1053548_1054658_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.7e-65	40.3
WP_082634765.1\|1054710_1055958_-\|protease	serine protease	V5LS29	Emiliania_huxleyi_virus	1.5e-08	27.6

DBSCAN-SWA_4

2453412 : 2509501

uncultured_Mediterranean_phage(10.53%)

transposase,bacteriocin,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060586467.1\|2453412_2454171_-\|tRNA	tRNA hydroxylase	NA	NA	NA	NA
WP_050665570.1\|2454282_2455803_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.2e-90	44.0
WP_060586469.1\|2455821_2456313_-\|bacteriocin	bacteriocin production protein	NA	NA	NA	NA
WP_050665568.1\|2456502_2457798_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.0e-92	49.9
WP_060586471.1\|2457948_2459286_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	4.7e-80	41.7
WP_050665566.1\|2459293_2459905_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_060586472.1\|2459950_2462473_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	6.6e-91	49.9
WP_005363787.1\|2462591_2463083_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_050665564.1\|2463234_2464350_+	alanine dehydrogenase	NA	NA	NA	NA
WP_144431376.1\|2464390_2465410_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-25	30.1
WP_144431377.1\|2465337_2465976_-	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	2.3e-40	57.2
WP_050665562.1\|2466161_2466362_-	hypothetical protein	NA	NA	NA	NA
WP_050665561.1\|2466448_2466649_-	hypothetical protein	NA	NA	NA	NA
WP_060586473.1\|2466701_2468141_-	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	1.2e-49	28.5
WP_060586475.1\|2468240_2469110_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_060586477.1\|2469180_2469663_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_060586479.1\|2469694_2470225_+	O-acetyl-ADP-ribose deacetylase	A0A0K1L687	Scale_drop_disease_virus	1.5e-24	45.8
WP_082634829.1\|2470149_2470818_-	hypothetical protein	NA	NA	NA	NA
WP_060588274.1\|2472168_2472507_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_060583260.1\|2472604_2473645_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	6.3e-72	41.8
WP_158453496.1\|2473947_2474166_+	hypothetical protein	NA	NA	NA	NA
WP_060586481.1\|2474200_2475106_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.2e-96	57.1
WP_144431437.1\|2475461_2476665_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	3.5e-114	70.5
WP_060586485.1\|2476746_2477109_-	hypothetical protein	NA	NA	NA	NA
WP_144431378.1\|2477717_2478677_+	hypothetical protein	NA	NA	NA	NA
WP_005354108.1\|2479562_2480117_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_060586487.1\|2480217_2482065_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_050665552.1\|2482124_2482769_-	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_060586491.1\|2482986_2483748_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_005354121.1\|2483744_2483933_-	Trm112 family protein	NA	NA	NA	NA
WP_060586494.1\|2483937_2484903_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_050665549.1\|2484902_2486657_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	3.9e-58	30.9
WP_060586496.1\|2486688_2488902_-	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA
WP_060586498.1\|2488990_2489488_+	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_050665547.1\|2489557_2490085_+	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_050665546.1\|2490203_2490860_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	3.7e-46	50.7
WP_060586500.1\|2490989_2493098_+	TIGR01666 family membrane protein	H9YQA8	environmental_Halophage	4.6e-05	26.6
WP_050665544.1\|2493134_2493470_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_060586502.1\|2493514_2494252_-	cell division protein DedD	NA	NA	NA	NA
WP_060586504.1\|2494251_2495508_-	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_050665541.1\|2495510_2496374_-	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_050665540.1\|2496491_2497304_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_060586507.1\|2497409_2499437_-	hypothetical protein	NA	NA	NA	NA
WP_060586509.1\|2499629_2500640_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_060586511.1\|2500708_2501881_-	4-phosphoerythronate dehydrogenase	A0A285PXZ1	Cedratvirus	2.2e-17	31.3
WP_060586513.1\|2501975_2502686_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_050665535.1\|2502785_2503736_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.7e-63	44.8
WP_060586515.1\|2503792_2505034_+	response regulator	A0A127AWB9	Bacillus_phage	1.2e-16	34.3
WP_060586517.1\|2505115_2505826_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_050665532.1\|2505818_2506535_+	arginyltransferase	NA	NA	NA	NA
WP_005300033.1\|2506603_2506822_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_060586519.1\|2506876_2509132_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-169	43.4
WP_050665530.1\|2509183_2509501_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	5.3e-14	46.9

DBSCAN-SWA_5

2524300 : 2580206

Planktothrix_phage(11.11%)

integrase,protease,transposase

attL 2518253:2518267|attR 2552705:2552719

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2518253:2518267	attL	NA	NA	NA	NA
WP_060586538.1\|2524300_2524786_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_060586540.1\|2524955_2525996_+	lipopolysaccharide heptosyltransferase family protein	NA	NA	NA	NA
WP_060586542.1\|2525992_2526883_-	DMT family transporter	NA	NA	NA	NA
WP_060586545.1\|2526998_2527580_+	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_050665513.1\|2527584_2528142_+	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_082634831.1\|2528144_2530442_+	electron transport complex subunit RsxC	NA	NA	NA	NA
WP_082634832.1\|2530441_2531503_+	electron transport complex subunit RsxD	NA	NA	NA	NA
WP_060586551.1\|2531499_2532135_+	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_050665509.1\|2532137_2532839_+	electron transport complex subunit E	NA	NA	NA	NA
WP_060586553.1\|2532848_2533490_+	endonuclease III	NA	NA	NA	NA
WP_060586555.1\|2533493_2533907_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_060586558.1\|2534012_2534324_+	hypothetical protein	NA	NA	NA	NA
WP_060586563.1\|2534323_2535109_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_060586564.1\|2535169_2535880_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_005363598.1\|2535911_2536730_-	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-23	33.9
WP_060586565.1\|2536756_2538406_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_060586566.1\|2538423_2540661_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_060586567.1\|2541274_2541919_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_060586569.1\|2541918_2542929_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.0e-27	32.7
WP_144431472.1\|2543737_2544628_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_060586571.1\|2544648_2545464_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_060586574.1\|2546708_2547515_+	UTRA domain-containing protein	NA	NA	NA	NA
WP_082634833.1\|2548226_2549435_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	3.9e-41	32.2
WP_082634834.1\|2551308_2552862_-	EAL domain-containing protein	NA	NA	NA	NA
2552705:2552719	attR	NA	NA	NA	NA
WP_162491594.1\|2552912_2553767_-	EAL domain-containing protein	NA	NA	NA	NA
WP_082634836.1\|2554001_2554277_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_060584132.1\|2554405_2555323_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.0e-97	57.9
WP_162491595.1\|2556745_2557195_+	hypothetical protein	NA	NA	NA	NA
WP_144431379.1\|2559204_2560284_+\|transposase	IS481-like element ISAs19 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.0e-72	40.9
WP_019706001.1\|2560327_2561275_+\|transposase	IS30-like element ISAs2 family transposase	Q9MBM9	Staphylococcus_prophage	1.4e-41	35.7
WP_060586586.1\|2561837_2563040_-	type III PLP-dependent enzyme	NA	NA	NA	NA
WP_060586587.1\|2563032_2564862_-	aconitase	NA	NA	NA	NA
WP_060588279.1\|2564833_2566039_-	MFS transporter	NA	NA	NA	NA
WP_060586589.1\|2566045_2567863_-	siderophore synthetase	NA	NA	NA	NA
WP_060586592.1\|2567859_2569071_-	carboxylate--amine ligase	NA	NA	NA	NA
WP_060586594.1\|2569292_2571329_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_060586595.1\|2571458_2573603_+	TonB-dependent siderophore receptor	A0A0P0I887	Acinetobacter_phage	4.7e-05	27.1
WP_060586597.1\|2573689_2574613_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060586598.1\|2574609_2575647_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_060586600.1\|2575643_2576615_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_060586603.1\|2576617_2577382_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	W6JKT0	Anomala_cuprea_entomopoxvirus	6.3e-13	26.1
WP_144431437.1\|2579001_2580206_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	3.5e-114	70.5

DBSCAN-SWA_6

2588969 : 2639689

Shigella_phage(14.29%)

integrase,transposase

attL 2626611:2626634|attR 2640163:2640186

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060586635.1\|2588969_2589932_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_144431380.1\|2590082_2590826_-	hypothetical protein	NA	NA	NA	NA
WP_060586642.1\|2590954_2592250_-	hypothetical protein	NA	NA	NA	NA
WP_144431475.1\|2592272_2593477_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	5.0e-113	69.8
WP_060586646.1\|2593552_2594896_-	hypothetical protein	NA	NA	NA	NA
WP_060586647.1\|2594953_2595994_+\|transposase	IS481-like element ISAs19 family transposase	A0A0M3LS26	Mannheimia_phage	1.3e-72	42.5
WP_060586648.1\|2596019_2596616_-	hypothetical protein	NA	NA	NA	NA
WP_060586650.1\|2596789_2597707_+	WYL domain-containing protein	NA	NA	NA	NA
WP_060586652.1\|2598314_2598767_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_060584132.1\|2599352_2600270_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.0e-97	57.9
WP_060586657.1\|2601417_2602782_+	alkaline phosphatase	NA	NA	NA	NA
WP_060586659.1\|2602830_2603508_+	hypothetical protein	NA	NA	NA	NA
WP_144431476.1\|2603566_2604304_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_060586663.1\|2604497_2604905_+	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
WP_050665998.1\|2605000_2605591_+	transcriptional regulator UhpA	NA	NA	NA	NA
WP_060586665.1\|2605590_2607096_+	signal transduction histidine-protein kinase/phosphatase UhpB	NA	NA	NA	NA
WP_060586667.1\|2607095_2608418_+	MFS transporter	NA	NA	NA	NA
WP_060586670.1\|2608432_2609578_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_060586672.1\|2609789_2610662_+	sterol desaturase family protein	NA	NA	NA	NA
WP_060586674.1\|2610679_2611393_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_060586675.1\|2611477_2613379_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.8e-62	36.4
WP_060586677.1\|2613560_2614001_-	hotdog fold thioesterase	NA	NA	NA	NA
WP_060586679.1\|2614031_2614517_-	hypothetical protein	NA	NA	NA	NA
WP_060586681.1\|2614516_2617564_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_060586682.1\|2617777_2618692_+	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_060586683.1\|2618800_2620099_+	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	1.5e-30	33.5
WP_082634839.1\|2620095_2620857_+	hypothetical protein	NA	NA	NA	NA
WP_060586684.1\|2620996_2622103_+	alkene reductase	NA	NA	NA	NA
WP_060586686.1\|2622157_2623054_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_060586689.1\|2623160_2624225_+	HlyD family secretion protein	NA	NA	NA	NA
WP_060586691.1\|2624221_2625217_+	DUF2955 domain-containing protein	NA	NA	NA	NA
WP_060586694.1\|2625297_2626473_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
2626611:2626634	attL	NA	NA	NA	NA
WP_060586696.1\|2626726_2627143_-	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_082634840.1\|2627189_2627423_-	hypothetical protein	NA	NA	NA	NA
WP_158453498.1\|2628445_2628607_-	hypothetical protein	NA	NA	NA	NA
WP_060583260.1\|2628858_2629899_-\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	6.3e-72	41.8
WP_060586698.1\|2630101_2631124_-	hypothetical protein	NA	NA	NA	NA
WP_144431382.1\|2631146_2631479_-	hypothetical protein	NA	NA	NA	NA
WP_144431383.1\|2631479_2631824_-	hypothetical protein	NA	NA	NA	NA
WP_060586700.1\|2632422_2634078_-	hypothetical protein	NA	NA	NA	NA
WP_158453499.1\|2634388_2634535_-	hypothetical protein	NA	NA	NA	NA
WP_060586703.1\|2635076_2635544_-	hypothetical protein	L0AQZ0	Klebsiella_phage	2.8e-19	38.9
WP_060586705.1\|2635574_2635820_-	hypothetical protein	NA	NA	NA	NA
WP_082634841.1\|2636023_2636674_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144431384.1\|2636811_2637009_-	hypothetical protein	NA	NA	NA	NA
WP_144431385.1\|2637997_2638480_-	hypothetical protein	NA	NA	NA	NA
WP_082634931.1\|2638867_2639689_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2640163:2640186	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2727172 : 2757254

Aeromonas_phage(82.35%)

capsid,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060583260.1\|2727172_2728213_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	6.3e-72	41.8
WP_060586763.1\|2729030_2734970_-	hypothetical protein	A0A1I9KFG8	Aeromonas_phage	2.2e-28	28.7
WP_060586764.1\|2735103_2736600_-	hypothetical protein	A0A1I9KFD9	Aeromonas_phage	4.2e-93	47.3
WP_029301107.1\|2736609_2736846_-	hypothetical protein	A0A1I9KFI4	Aeromonas_phage	1.4e-08	54.5
WP_029301108.1\|2736845_2737226_-	hypothetical protein	A0A1I9KFD7	Aeromonas_phage	2.0e-47	80.8
WP_060586765.1\|2737237_2737861_-	hypothetical protein	A0A1I9KFE8	Aeromonas_phage	9.0e-74	70.8
WP_029301110.1\|2737869_2738241_-	hypothetical protein	A0A1I9KFI0	Aeromonas_phage	5.5e-47	74.1
WP_050490269.1\|2738219_2738633_-	hypothetical protein	NA	NA	NA	NA
WP_060586766.1\|2738629_2740111_-	DUF1983 domain-containing protein	A0A1I9KGC4	Aeromonas_phage	1.9e-45	51.4
WP_060586767.1\|2740107_2741718_-	hypothetical protein	A0A1I9KFD2	Aeromonas_phage	1.0e-209	65.0
WP_144431477.1\|2741960_2743165_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.6e-114	70.1
WP_060586769.1\|2743952_2744396_-	hypothetical protein	NA	NA	NA	NA
WP_060586770.1\|2744392_2745922_-	hypothetical protein	NA	NA	NA	NA
WP_060586771.1\|2745924_2746584_-	hypothetical protein	A0A1I9KFD0	Aeromonas_phage	1.8e-40	42.2
WP_060586772.1\|2746595_2747225_-	hypothetical protein	NA	NA	NA	NA
WP_060586773.1\|2747224_2747659_-	hypothetical protein	A0A1I9KFH0	Aeromonas_phage	6.5e-31	64.5
WP_029301119.1\|2747725_2748115_-	hypothetical protein	A0A1I9KGB3	Aeromonas_phage	4.5e-47	75.2
WP_060586774.1\|2748170_2749388_-\|capsid	N4-gp56 family major capsid protein	A0A1I9KFC6	Aeromonas_phage	7.1e-200	82.7
WP_060586775.1\|2749451_2750411_-	hypothetical protein	A0A1I9KFD1	Aeromonas_phage	1.6e-58	47.5
WP_060586776.1\|2750609_2752736_-	hypothetical protein	A0A1I9KFF7	Aeromonas_phage	5.1e-262	70.0
WP_060586777.1\|2755265_2757254_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	4.8e-20	26.8

DBSCAN-SWA_8

3755066 : 3822938

Aeromonas_virus(87.5%)

head,capsid,transposase,terminase,holin,integrase,tail,portal

attL 3754951:3754997|attR 3824596:3824642

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3754951:3754997	attL	NA	NA	NA	NA
WP_060587421.1\|3755066_3756119_-\|integrase	site-specific integrase	A5X9F3	Aeromonas_virus	4.3e-161	80.9
WP_060587422.1\|3756688_3757291_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060587423.1\|3757334_3758273_-	ATP-binding protein	NA	NA	NA	NA
WP_060587424.1\|3758335_3759004_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	4.1e-40	43.1
WP_060587425.1\|3759133_3759319_+	Cro/Cl family transcriptional regulator	K7PHB1	Enterobacterial_phage	2.3e-09	50.9
WP_060587426.1\|3759330_3759618_+	hypothetical protein	NA	NA	NA	NA
WP_080891445.1\|3759553_3760129_+	hypothetical protein	A5X9F7	Aeromonas_virus	2.5e-38	55.7
WP_042067315.1\|3760142_3760568_+	hypothetical protein	NA	NA	NA	NA
WP_017412429.1\|3760604_3760790_+	hypothetical protein	NA	NA	NA	NA
WP_044801236.1\|3760813_3761080_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_029300943.1\|3761793_3762078_+	hypothetical protein	NA	NA	NA	NA
WP_082634894.1\|3762077_3764843_+	replication endonuclease	A5X9G4	Aeromonas_virus	6.5e-124	37.0
WP_060587428.1\|3764954_3765224_-	hypothetical protein	NA	NA	NA	NA
WP_144431437.1\|3765424_3766628_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	3.5e-114	70.5
WP_144431419.1\|3766701_3766959_-	hypothetical protein	NA	NA	NA	NA
WP_082634895.1\|3767371_3767626_-	ogr/Delta-like zinc finger family protein	A5X9H0	Aeromonas_virus	1.7e-26	67.5
WP_082634896.1\|3767682_3768498_-\|portal	phage portal protein	A5X9H1	Aeromonas_virus	2.1e-115	76.6
WP_082634897.1\|3768415_3770536_-\|terminase	terminase	A5X9H3	Aeromonas_virus	1.1e-243	67.5
WP_082634898.1\|3770713_3771631_+\|capsid	capsid protein	A5X9H4	Aeromonas_virus	1.8e-70	49.5
WP_060587431.1\|3771641_3772721_+\|capsid	phage major capsid protein, P2 family	A5X9H5	Aeromonas_virus	3.6e-139	69.3
WP_060587432.1\|3772723_3773449_+\|terminase	terminase	A5X9H6	Aeromonas_virus	5.0e-100	74.9
WP_060588335.1\|3773554_3774016_+\|head	head completion/stabilization protein	A5X9H7	Aeromonas_virus	3.0e-50	69.3
WP_060587433.1\|3774012_3774543_+	hypothetical protein	A5X9H8	Aeromonas_virus	1.0e-54	58.2
WP_060587434.1\|3774555_3775680_+	DUF2586 family protein	A5X9I0	Aeromonas_virus	2.0e-185	86.1
WP_060587435.1\|3775683_3776139_+	DUF2597 family protein	A5X9I1	Aeromonas_virus	2.4e-68	84.0
WP_060587436.1\|3776149_3776359_+	TraR/DksA family transcriptional regulator	A5X9I2	Aeromonas_virus	2.5e-28	85.5
WP_060587437.1\|3776382_3776709_+\|holin	phage holin, lambda family	A5X9I3	Aeromonas_virus	5.2e-25	59.4
WP_060587438.1\|3776695_3777157_+	glycoside hydrolase family 104 protein	A5X9I5	Aeromonas_virus	1.3e-77	87.6
WP_060587439.1\|3777153_3777588_+	hypothetical protein	NA	NA	NA	NA
WP_060587440.1\|3777711_3777978_+	hypothetical protein	A5X9I7	Aeromonas_virus	1.2e-22	63.4
WP_158453505.1\|3778022_3778163_+	hypothetical protein	A5X9I8	Aeromonas_virus	7.0e-11	69.6
WP_060587441.1\|3778166_3780221_+\|tail	phage tail tape measure protein	A5X9I9	Aeromonas_virus	1.3e-201	58.8
WP_060587442.1\|3780217_3780541_+	DUF2590 family protein	A5X9J0	Aeromonas_virus	6.7e-49	88.8
WP_060587443.1\|3780537_3781725_+	hypothetical protein	A5X9J1	Aeromonas_virus	3.0e-187	83.7
WP_060587444.1\|3781717_3782410_+	hypothetical protein	A5X9J2	Aeromonas_virus	3.4e-50	57.6
WP_060587445.1\|3782394_3783177_+	permease	G0ZT38	Aeromonas_phage	4.8e-56	77.9
WP_060587446.1\|3784030_3784249_+	hypothetical protein	NA	NA	NA	NA
WP_060587447.1\|3784245_3785127_+	hypothetical protein	A5X9J6	Aeromonas_virus	4.2e-117	74.0
WP_060587448.1\|3785123_3785675_+	hypothetical protein	A5X9J7	Aeromonas_virus	5.7e-64	73.2
WP_060587449.1\|3785671_3787285_+	hypothetical protein	A5X9J8	Aeromonas_virus	1.2e-271	84.5
WP_060587450.1\|3787295_3787994_+	phage virion morphogenesis protein	NA	NA	NA	NA
WP_051773369.1\|3788731_3789190_-	hypothetical protein	NA	NA	NA	NA
WP_060587451.1\|3789575_3790628_-\|integrase	site-specific integrase	A5X9F3	Aeromonas_virus	3.4e-174	84.6
WP_060587452.1\|3790608_3791460_-	hypothetical protein	A5X9F4	Aeromonas_virus	5.5e-82	82.1
WP_060587453.1\|3791469_3792186_-	LexA family transcriptional regulator	A5X9F5	Aeromonas_virus	1.5e-104	76.9
WP_060587454.1\|3792324_3792540_+	hypothetical protein	A5X9F6	Aeromonas_virus	6.7e-29	93.0
WP_060587455.1\|3792569_3793079_+	hypothetical protein	A5X9F7	Aeromonas_virus	5.1e-75	84.6
WP_060587456.1\|3793089_3793548_+	hypothetical protein	A5X9F8	Aeromonas_virus	8.9e-55	73.0
WP_060587457.1\|3793963_3794155_+	hypothetical protein	A5X9G0	Aeromonas_virus	7.3e-19	74.2
WP_060587458.1\|3794151_3794361_+	hypothetical protein	A5X9G1	Aeromonas_virus	1.0e-26	92.6
WP_060587459.1\|3794357_3794666_+	hypothetical protein	A5X9G2	Aeromonas_virus	2.1e-31	60.6
WP_060587460.1\|3794662_3794920_+	hypothetical protein	NA	NA	NA	NA
WP_060587461.1\|3794916_3797202_+	replication endonuclease	A5X9G4	Aeromonas_virus	0.0e+00	78.5
WP_060587462.1\|3797182_3797677_+	hypothetical protein	A5X9G5	Aeromonas_virus	4.6e-49	64.2
WP_060587463.1\|3797740_3798076_+	hypothetical protein	NA	NA	NA	NA
WP_060587464.1\|3798096_3798315_-	hypothetical protein	NA	NA	NA	NA
WP_144431421.1\|3798499_3799423_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_144431422.1\|3799432_3799960_+	hypothetical protein	NA	NA	NA	NA
WP_060587465.1\|3800024_3801299_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	1.6e-130	56.8
WP_060587466.1\|3801295_3801718_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.7e-31	49.6
WP_060587468.1\|3802607_3802859_-	ogr/Delta-like zinc finger family protein	A5X9H0	Aeromonas_virus	1.2e-37	88.0
WP_060587470.1\|3802924_3803944_-\|portal	phage portal protein	A5X9H1	Aeromonas_virus	3.9e-151	77.4
WP_060587479.1\|3805939_3806827_+\|capsid	capsid protein	A5X9H4	Aeromonas_virus	9.8e-82	56.2
WP_060587481.1\|3806839_3807904_+\|capsid	phage major capsid protein, P2 family	A5X9H5	Aeromonas_virus	1.2e-158	80.8
WP_060587483.1\|3807907_3808618_+\|terminase	terminase	A5X9H6	Aeromonas_virus	2.3e-89	69.0
WP_060587485.1\|3808728_3809190_+\|head	head completion/stabilization protein	A5X9H7	Aeromonas_virus	2.9e-45	65.6
WP_060587488.1\|3809186_3809690_+	hypothetical protein	A5X9H8	Aeromonas_virus	7.3e-58	62.6
WP_060587491.1\|3809686_3810370_+	virion morphogenesis protein	A5X9H9	Aeromonas_virus	1.8e-83	70.4
WP_060587493.1\|3810374_3811487_+	DUF2586 family protein	A5X9I0	Aeromonas_virus	1.6e-174	81.4
WP_060587495.1\|3811490_3811946_+	DUF2597 family protein	A5X9I1	Aeromonas_virus	2.5e-65	76.2
WP_060587497.1\|3811955_3812165_+	TraR/DksA family transcriptional regulator	A5X9I2	Aeromonas_virus	3.5e-22	76.8
WP_060588336.1\|3812189_3812513_+\|holin	phage holin, lambda family	A5X9I3	Aeromonas_virus	1.6e-26	63.8
WP_060587500.1\|3812502_3812964_+	glycoside hydrolase family 104 protein	G0ZT35	Aeromonas_phage	9.9e-70	78.4
WP_060587502.1\|3812960_3813395_+	hypothetical protein	NA	NA	NA	NA
WP_060587504.1\|3813518_3813776_+	hypothetical protein	A5X9I7	Aeromonas_virus	8.0e-29	75.6
WP_060587506.1\|3813966_3815862_+\|tail	phage tail tape measure protein	A5X9I9	Aeromonas_virus	3.0e-253	74.1
WP_060587509.1\|3815858_3816179_+	DUF2590 family protein	A5X9J0	Aeromonas_virus	1.5e-40	80.6
WP_082634944.1\|3816199_3817354_+	hypothetical protein	A5X9J1	Aeromonas_virus	3.9e-139	64.5
WP_060587513.1\|3817346_3818030_+	hypothetical protein	A5X9J2	Aeromonas_virus	2.0e-42	53.4
WP_060587515.1\|3818014_3818785_+	permease	G0ZT38	Aeromonas_phage	1.7e-53	77.2
WP_060587520.1\|3819671_3819899_+	hypothetical protein	NA	NA	NA	NA
WP_082634945.1\|3819964_3820771_+	hypothetical protein	A5X9J6	Aeromonas_virus	5.1e-61	46.5
WP_060587525.1\|3820767_3821328_+	hypothetical protein	A5X9J7	Aeromonas_virus	5.2e-65	73.0
WP_060587528.1\|3821324_3822938_+	hypothetical protein	A5X9J8	Aeromonas_virus	1.0e-222	71.3
3824596:3824642	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3902690 : 3914751

Caulobacter_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060587612.1\|3902690_3904550_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.2e-36	33.1
WP_060587615.1\|3904776_3906567_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.7e-72	40.6
WP_060587618.1\|3906641_3907085_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.1e-28	50.7
WP_005350755.1\|3907100_3907316_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_060587621.1\|3907496_3908510_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.8e-109	59.2
WP_050667578.1\|3909167_3909701_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	4.1e-19	30.3
WP_060587624.1\|3909836_3911102_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_060587628.1\|3911178_3914751_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	7.6e-16	24.1

DBSCAN-SWA_10

4114743 : 4185029

Bacillus_phage(17.65%)

tRNA,holin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060583260.1\|4114743_4115784_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	6.3e-72	41.8
WP_082634908.1\|4115834_4116368_-	AAA family ATPase	NA	NA	NA	NA
WP_144431427.1\|4117645_4118062_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_144431428.1\|4119390_4119999_-	hypothetical protein	NA	NA	NA	NA
WP_060587877.1\|4120945_4121842_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	4.2e-40	35.4
WP_060587878.1\|4121988_4125696_-	methionine synthase	A0A140XBC7	Dickeya_phage	3.3e-22	80.3
WP_050666978.1\|4125864_4127142_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	2.2e-42	39.8
WP_050666977.1\|4127199_4128009_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_050666987.1\|4128005_4128563_-	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_060587881.1\|4128686_4129355_+	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_060588345.1\|4129391_4130003_-	LysE family translocator	NA	NA	NA	NA
WP_060587882.1\|4131237_4132143_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_060587884.1\|4132137_4133403_-\|tRNA	tyrosine--tRNA ligase	A0A1S6UA79	Serratia_phage	9.0e-81	42.0
WP_060587886.1\|4133531_4134320_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_060587888.1\|4134363_4135122_-	type II secretion system protein N	NA	NA	NA	NA
WP_050666970.1\|4135118_4135610_-	type II secretion system protein M	NA	NA	NA	NA
WP_060587890.1\|4135606_4136782_-	GspL family type II secretion system protein ExeL	NA	NA	NA	NA
WP_050666985.1\|4136792_4137812_-	type II secretion system minor pseudopilin GspK	NA	NA	NA	NA
WP_050666968.1\|4137825_4138455_-	GspJ family T2SS minor pseudopilin variant ExeJ	NA	NA	NA	NA
WP_082178010.1\|4138451_4138811_-	type II secretion system minor pseudopilin GspI	NA	NA	NA	NA
WP_060588346.1\|4138807_4139350_-	type II secretion system minor pseudopilin GspH	NA	NA	NA	NA
WP_050666967.1\|4139407_4139839_-	GspG family T2SS major pseudopilin variant ExeG	NA	NA	NA	NA
WP_060587892.1\|4139989_4141210_-	GspF family T2SS innner membrane protein variant ExeF	NA	NA	NA	NA
WP_060587894.1\|4141211_4142717_-	type II secretion system ATPase GspE	NA	NA	NA	NA
WP_060587896.1\|4142713_4144753_-	GspD family T2SS secretin variant ExeD	R9TEZ5	Vibrio_phage	1.2e-29	34.7
WP_162491607.1\|4144775_4145606_-	type II secretion system protein GspC	NA	NA	NA	NA
WP_060587900.1\|4145847_4146246_+	ribosome-associated heat shock protein Hsp15	NA	NA	NA	NA
WP_060587902.1\|4146298_4147180_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_060587904.1\|4147328_4148954_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	2.1e-143	51.0
WP_060587906.1\|4149011_4150322_-	two-component system sensor histidine kinase EnvZ	W8CYF6	Bacillus_phage	3.1e-15	25.6
WP_050666958.1\|4150318_4151038_-	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	2.8e-34	34.7
WP_060587909.1\|4151686_4152163_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_060587912.1\|4152179_4154495_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_060587914.1\|4154545_4155154_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
WP_050666954.1\|4155222_4156200_-	serine/threonine protein kinase	NA	NA	NA	NA
WP_060587916.1\|4156253_4157687_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA
WP_050666952.1\|4157846_4158110_-	YihD family protein	NA	NA	NA	NA
WP_050666951.1\|4158137_4159292_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_050666950.1\|4159423_4159813_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_060587917.1\|4159827_4162191_-	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.2e-107	37.0
WP_050666948.1\|4162289_4162478_-\|holin	holin	NA	NA	NA	NA
WP_060587918.1\|4162858_4164508_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_050666946.1\|4164682_4164880_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	3.9e-07	43.1
WP_060587920.1\|4164963_4165251_-	hypothetical protein	NA	NA	NA	NA
WP_050666944.1\|4165362_4165863_-	DUF1993 domain-containing protein	NA	NA	NA	NA
WP_060587922.1\|4165935_4166277_-	ligand-binding protein SH3	NA	NA	NA	NA
WP_060584132.1\|4167821_4168739_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.0e-97	57.9
WP_144431431.1\|4169697_4170159_-	hypothetical protein	NA	NA	NA	NA
WP_060587930.1\|4170749_4172921_-	DNA helicase II	A7KV33	Bacillus_phage	1.5e-112	35.7
WP_060587933.1\|4172999_4174097_-	FUSC family protein	NA	NA	NA	NA
WP_060587935.1\|4174183_4176175_+	exoribonuclease II	Q0GXV6	Lactococcus_phage	5.1e-30	26.4
WP_060587938.1\|4176468_4177053_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_060587941.1\|4177049_4178093_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_060587944.1\|4178094_4178658_-\|protease	ATP-dependent protease	NA	NA	NA	NA
WP_060587946.1\|4178936_4180682_+\|tRNA	arginine--tRNA ligase	A0A1V0SIS8	Klosneuvirus	1.0e-82	35.2
WP_060587948.1\|4180685_4181483_+	cell division protein	NA	NA	NA	NA
WP_050667409.1\|4181611_4182145_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_050667410.1\|4182200_4183529_+	HslU--HslV peptidase ATPase subunit	A0A173GFL6	Erwinia_phage	6.4e-45	28.7
WP_144431437.1\|4183825_4185029_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	3.5e-114	70.5

DBSCAN-SWA_11

4199668 : 4223687

Vibrio_phage(72.22%)

transposase,plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050665414.1\|4199668_4200982_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	8.9e-15	26.5
WP_050665401.1\|4201026_4201500_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_060587963.1\|4202776_4203520_-	transcriptional regulator	A0A2I7S9A5	Vibrio_phage	3.5e-85	62.7
WP_060587966.1\|4203688_4203919_+	transcriptional regulator	A0A2I7S995	Vibrio_phage	3.5e-23	75.3
WP_060587969.1\|4203923_4205909_+	DDE endonuclease	A0A2I7S9A8	Vibrio_phage	2.7e-225	60.7
WP_060587970.1\|4205932_4206175_+	hypothetical protein	NA	NA	NA	NA
WP_060587971.1\|4206248_4207181_+	AAA family ATPase	A0A2I7S9C3	Vibrio_phage	1.7e-108	64.2
WP_060587973.1\|4207184_4207379_+	hypothetical protein	NA	NA	NA	NA
WP_060587975.1\|4207375_4207582_+	hypothetical protein	NA	NA	NA	NA
WP_043849593.1\|4207600_4207924_+	hypothetical protein	NA	NA	NA	NA
WP_005301788.1\|4207938_4208547_+	DUF3164 family protein	A0A2I7S9B0	Vibrio_phage	2.1e-59	58.0
WP_060587977.1\|4208555_4209062_+	hypothetical protein	NA	NA	NA	NA
WP_060588347.1\|4209051_4209333_+	hypothetical protein	M1PJ71	Vibrio_phage	2.6e-20	55.2
WP_060587979.1\|4209325_4209568_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_060587980.1\|4209567_4210032_+	hypothetical protein	NA	NA	NA	NA
WP_060587982.1\|4210139_4210352_+	hypothetical protein	NA	NA	NA	NA
WP_060587985.1\|4210462_4210717_+	hypothetical protein	NA	NA	NA	NA
WP_060587987.1\|4210936_4211182_+	hypothetical protein	NA	NA	NA	NA
WP_060587988.1\|4211174_4211678_+	hypothetical protein	NA	NA	NA	NA
WP_060587991.1\|4211667_4212300_+	regulatory protein GemA	A0A2I7S9B8	Vibrio_phage	6.4e-35	47.8
WP_060587995.1\|4213110_4215078_+	hypothetical protein	A0A2P9JZK0	Alteromonadaceae_phage	4.4e-82	39.3
WP_060587998.1\|4215089_4216496_+	multidrug DMT transporter permease	A0A2I7S9E8	Vibrio_phage	2.7e-110	47.9
WP_060588001.1\|4216488_4217568_+\|tail	phage tail protein	M1PVV2	Vibrio_phage	9.7e-92	49.3
WP_060588003.1\|4217561_4218116_+\|plate	phage baseplate assembly protein	M4MCP6	Vibrio_phage	1.1e-38	48.8
WP_060588006.1\|4218122_4218575_+	hypothetical protein	M4MB61	Vibrio_phage	1.4e-31	55.6
WP_060588007.1\|4218564_4219632_+\|plate	baseplate J/gp47 family protein	M4MHE1	Vibrio_phage	3.6e-123	62.0
WP_060588009.1\|4219616_4220138_+	DUF2313 domain-containing protein	A0A2I7S9L6	Vibrio_phage	4.0e-43	53.2
WP_060588012.1\|4220139_4220655_+	hypothetical protein	A0A0C4UQS2	Shigella_phage	2.5e-13	41.3
WP_144431437.1\|4220957_4222162_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	3.5e-114	70.5
WP_144431433.1\|4222523_4222793_-	hypothetical protein	NA	NA	NA	NA
WP_060588016.1\|4223063_4223687_-	repressor LexA	U5P451	Shigella_phage	2.8e-11	46.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013067

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection