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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP022503 Salmonella enterica subsp. enterica serovar Hvittingfoss str. SA20014981 chromosome, complete genome 3 crisprs DEDDh,DinG,cas3,cas14j,WYL,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3 0 12 5 0

Results visualization

1. NZ_CP022503
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022503_1 4744681-4744831 TypeI-E I-E
2 spacers
cas3,cas8e,cse2gr11,cas7,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022503_2 4761088-4761483 TypeI-E I-E
6 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022503_3 4761495-4762561 TypeI-E I-E
17 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP022503_3 3.17|4762501|32|NZ_CP022503|CRT,CRISPRCasFinder 4762501-4762532 32 NZ_CP044185 Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403 35345-35376 0 1.0
NZ_CP022503_3 3.12|4762196|32|NZ_CP022503|CRT,CRISPRCasFinder 4762196-4762227 32 NC_004313 Salmonella phage ST64B, complete genome 31961-31992 1 0.969
NZ_CP022503_3 3.12|4762196|32|NZ_CP022503|CRT,CRISPRCasFinder 4762196-4762227 32 KU927493 Salmonella phage 118970_sal3, complete genome 69573-69604 1 0.969
NZ_CP022503_3 3.12|4762196|32|NZ_CP022503|CRT,CRISPRCasFinder 4762196-4762227 32 AY055382 Salmonella typhimurium phage ST64B complete sequence 31961-31992 1 0.969
NZ_CP022503_3 3.17|4762501|32|NZ_CP022503|CRT,CRISPRCasFinder 4762501-4762532 32 NZ_CP029990 Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence 95164-95195 1 0.969
NZ_CP022503_3 3.17|4762501|32|NZ_CP022503|CRT,CRISPRCasFinder 4762501-4762532 32 NZ_CP054718 Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence 9403-9434 1 0.969
NZ_CP022503_3 3.17|4762501|32|NZ_CP022503|CRT,CRISPRCasFinder 4762501-4762532 32 NZ_CP054718 Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence 39737-39768 1 0.969
NZ_CP022503_3 3.17|4762501|32|NZ_CP022503|CRT,CRISPRCasFinder 4762501-4762532 32 NZ_CP054718 Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence 113376-113407 1 0.969
NZ_CP022503_2 2.2|4761178|32|NZ_CP022503|CRISPRCasFinder,CRT 4761178-4761209 32 NZ_CP024895 Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence 46158-46189 7 0.781
NZ_CP022503_3 3.1|4761524|32|NZ_CP022503|CRT 4761524-4761555 32 CP038509 Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219b 18240-18271 7 0.781
NZ_CP022503_3 3.1|4761524|32|NZ_CP022503|CRT 4761524-4761555 32 NZ_CP030875 Raoultella sp. X13 plasmid unnamed, complete sequence 20662-20693 7 0.781
NZ_CP022503_3 3.17|4762501|32|NZ_CP022503|CRT,CRISPRCasFinder 4762501-4762532 32 NZ_CP040720 Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence 270963-270994 7 0.781
NZ_CP022503_1 1.2|4744771|32|NZ_CP022503|CRISPRCasFinder 4744771-4744802 32 JX434031 Pseudomonas phage JBD24, complete genome 2242-2273 8 0.75
NZ_CP022503_2 2.5|4761361|32|NZ_CP022503|CRISPRCasFinder,CRT 4761361-4761392 32 NZ_CP042964 Bartonella kosoyi strain Tel Aviv plasmid pTLV-1, complete sequence 19042-19073 8 0.75
NZ_CP022503_3 3.4|4761708|32|NZ_CP022503|CRT,CRISPRCasFinder 4761708-4761739 32 KJ010548 Bacillus phage Bp8p-T, complete genome 77456-77487 8 0.75
NZ_CP022503_3 3.4|4761708|32|NZ_CP022503|CRT,CRISPRCasFinder 4761708-4761739 32 NC_029121 Bacillus phage Bp8p-C, complete genome 77454-77485 8 0.75
NZ_CP022503_3 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder 4761769-4761800 32 NZ_CP043846 Staphylococcus epidermidis strain ATCC 12228 plasmid unnamed, complete sequence 8219-8250 8 0.75
NZ_CP022503_3 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder 4761769-4761800 32 NZ_CP030248 Staphylococcus epidermidis strain CSF41498 plasmid pCSF41498_2, complete sequence 7928-7959 8 0.75
NZ_CP022503_3 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder 4761769-4761800 32 NZ_CP009047 Staphylococcus epidermidis strain SEI plasmid unnamed, complete sequence 1747-1778 8 0.75
NZ_CP022503_3 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder 4761769-4761800 32 NZ_HG813244 Staphylococcus epidermidis PM221 plasmid 3, complete sequence 5322-5353 8 0.75
NZ_CP022503_3 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder 4761769-4761800 32 NZ_CP023971 Staphylococcus lugdunensis strain FDAARGOS_381 plasmid unnamed1, complete sequence 1686-1717 8 0.75
NZ_CP022503_3 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder 4761769-4761800 32 NZ_CP014116 Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed4 4418-4449 8 0.75
NZ_CP022503_3 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder 4761769-4761800 32 NZ_CP014117 Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed3, complete sequence 5393-5424 8 0.75
NZ_CP022503_3 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder 4761769-4761800 32 NZ_CP014120 Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed2, complete sequence 1517-1548 8 0.75
NZ_CP022503_3 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder 4761769-4761800 32 NZ_CP034116 Staphylococcus epidermidis strain CDC121 plasmid pSTA481, complete sequence 3901-3932 8 0.75
NZ_CP022503_3 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder 4761769-4761800 32 NZ_CP034113 Staphylococcus epidermidis strain CDC120 plasmid pSTA492, complete sequence 16472-16503 8 0.75
NZ_CP022503_3 3.8|4761952|32|NZ_CP022503|CRT,CRISPRCasFinder 4761952-4761983 32 NZ_CP050100 Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b3, complete sequence 272426-272457 8 0.75
NZ_CP022503_3 3.1|4761524|32|NZ_CP022503|CRT 4761524-4761555 32 NC_014107 Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence 181502-181533 9 0.719
NZ_CP022503_3 3.1|4761524|32|NZ_CP022503|CRT 4761524-4761555 32 NZ_CP022152 Citrobacter freundii strain 705SK3 plasmid p705SK3_1, complete sequence 130156-130187 9 0.719
NZ_CP022503_3 3.1|4761524|32|NZ_CP022503|CRT 4761524-4761555 32 KC170280 Uncultured bacterium plasmid pDS2, complete sequence 48967-48998 9 0.719
NZ_CP022503_3 3.7|4761891|32|NZ_CP022503|CRT,CRISPRCasFinder 4761891-4761922 32 NZ_CP021438 Bacillus thuringiensis strain C15 plasmid pBMB172, complete sequence 72349-72380 9 0.719
NZ_CP022503_3 3.8|4761952|32|NZ_CP022503|CRT,CRISPRCasFinder 4761952-4761983 32 NZ_CP034911 Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence 88392-88423 9 0.719
NZ_CP022503_3 3.12|4762196|32|NZ_CP022503|CRT,CRISPRCasFinder 4762196-4762227 32 NZ_CP015221 Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence 111308-111339 9 0.719
NZ_CP022503_2 2.2|4761178|32|NZ_CP022503|CRISPRCasFinder,CRT 4761178-4761209 32 NC_008826 Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence 301678-301709 10 0.688
NZ_CP022503_2 2.4|4761300|32|NZ_CP022503|CRISPRCasFinder,CRT 4761300-4761331 32 NZ_CP024314 Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence 566497-566528 10 0.688
NZ_CP022503_3 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder 4761769-4761800 32 LR135896 uncultured phage genomic DNA containing rbcL region region 72577-72608 10 0.688
NZ_CP022503_3 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder 4761769-4761800 32 NC_049387 Escherichia virus P2_4B2 genome assembly, chromosome: 1 31143-31174 10 0.688
NZ_CP022503_2 2.1|4761117|32|NZ_CP022503|CRISPRCasFinder,CRT 4761117-4761148 32 MN034684 Leviviridae sp. isolate H1_Rhizo_27_scaffold_801 RNA-dependent RNA polymerase (H1Rhizo27801_000001), hypothetical protein (H1Rhizo27801_000002), and hypothetical protein (H1Rhizo27801_000003) genes, complete cds 715-746 11 0.656

1. spacer 3.17|4762501|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatatccgcccatcggcc	Protospacer
********************************

2. spacer 3.12|4762196|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

3. spacer 3.12|4762196|32|NZ_CP022503|CRT,CRISPRCasFinder matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

4. spacer 3.12|4762196|32|NZ_CP022503|CRT,CRISPRCasFinder matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

5. spacer 3.17|4762501|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP029990 (Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

6. spacer 3.17|4762501|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

7. spacer 3.17|4762501|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

8. spacer 3.17|4762501|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

9. spacer 2.2|4761178|32|NZ_CP022503|CRISPRCasFinder,CRT matches to NZ_CP024895 (Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cggtaacaggcacgaatcaggcgtgtcggcgt	CRISPR spacer
tgtgcacaggcacgaatcaggcgtggcgccgg	Protospacer
.*   ******************** ** ** 

10. spacer 3.1|4761524|32|NZ_CP022503|CRT matches to CP038509 (Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219b) position: , mismatch: 7, identity: 0.781

tggttgttaatgctggcgatatttttagcaca	CRISPR spacer
tcgttgttaatggtggcgatgttttaataaaa	Protospacer
* ********** *******.**** *  * *

11. spacer 3.1|4761524|32|NZ_CP022503|CRT matches to NZ_CP030875 (Raoultella sp. X13 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

tggttgttaatgctggcgatatttttagcaca	CRISPR spacer
ttgttgttaatggtggcgatgttttaataaaa	Protospacer
* ********** *******.**** *  * *

12. spacer 3.17|4762501|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgagaaacgcctggatctccgcccaccgccg	Protospacer
*** . *********** ********.** * 

13. spacer 1.2|4744771|32|NZ_CP022503|CRISPRCasFinder matches to JX434031 (Pseudomonas phage JBD24, complete genome) position: , mismatch: 8, identity: 0.75

gtcacgaggtctgacgcggatgtgatg--agtta	CRISPR spacer
tcggcgaggtctgccgcgaatgtgatggcagt--	Protospacer
 . .********* ****.********  ***  

14. spacer 2.5|4761361|32|NZ_CP022503|CRISPRCasFinder,CRT matches to NZ_CP042964 (Bartonella kosoyi strain Tel Aviv plasmid pTLV-1, complete sequence) position: , mismatch: 8, identity: 0.75

aattatctatttttctggcccgttttcaatgc	CRISPR spacer
aaaaatctatttttcttgccagttttctaaaa	Protospacer
**  ************ *** ****** * . 

15. spacer 3.4|4761708|32|NZ_CP022503|CRT,CRISPRCasFinder matches to KJ010548 (Bacillus phage Bp8p-T, complete genome) position: , mismatch: 8, identity: 0.75

ctcgacagtgtgtgtaaaccggcgggcgctgg---	CRISPR spacer
ctcgacagtgtgtgtaaa---gctgctgttagacc	Protospacer
******************   ** * .*.*.*   

16. spacer 3.4|4761708|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NC_029121 (Bacillus phage Bp8p-C, complete genome) position: , mismatch: 8, identity: 0.75

ctcgacagtgtgtgtaaaccggcgggcgctgg---	CRISPR spacer
ctcgacagtgtgtgtaaa---gctgctgttagacc	Protospacer
******************   ** * .*.*.*   

17. spacer 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP043846 (Staphylococcus epidermidis strain ATCC 12228 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gttattcagtttattaaatttttccgccaagt	CRISPR spacer
tttattcagtatatttaatttttctctcgaat	Protospacer
 ********* **** ********. .*.*.*

18. spacer 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP030248 (Staphylococcus epidermidis strain CSF41498 plasmid pCSF41498_2, complete sequence) position: , mismatch: 8, identity: 0.75

gttattcagtttattaaatttttccgccaagt	CRISPR spacer
tttattcagtatatttaatttttctctcgaat	Protospacer
 ********* **** ********. .*.*.*

19. spacer 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP009047 (Staphylococcus epidermidis strain SEI plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gttattcagtttattaaatttttccgccaagt	CRISPR spacer
tttattcagtatatttaatttttctctcgaat	Protospacer
 ********* **** ********. .*.*.*

20. spacer 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_HG813244 (Staphylococcus epidermidis PM221 plasmid 3, complete sequence) position: , mismatch: 8, identity: 0.75

gttattcagtttattaaatttttccgccaagt	CRISPR spacer
tttattcagtatatttaatttttctctcgaat	Protospacer
 ********* **** ********. .*.*.*

21. spacer 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP023971 (Staphylococcus lugdunensis strain FDAARGOS_381 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gttattcagtttattaaatttttccgccaagt	CRISPR spacer
tttattcagtatatttaatttttctctcgaat	Protospacer
 ********* **** ********. .*.*.*

22. spacer 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP014116 (Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed4) position: , mismatch: 8, identity: 0.75

gttattcagtttattaaatttttccgccaagt	CRISPR spacer
tttattcagtatatttaatttttctctcgaat	Protospacer
 ********* **** ********. .*.*.*

23. spacer 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP014117 (Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gttattcagtttattaaatttttccgccaagt	CRISPR spacer
tttattcagtatatttaatttttctctcgaat	Protospacer
 ********* **** ********. .*.*.*

24. spacer 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP014120 (Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gttattcagtttattaaatttttccgccaagt	CRISPR spacer
tttattcagtatatttaatttttctctcgaat	Protospacer
 ********* **** ********. .*.*.*

25. spacer 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP034116 (Staphylococcus epidermidis strain CDC121 plasmid pSTA481, complete sequence) position: , mismatch: 8, identity: 0.75

gttattcagtttattaaatttttccgccaagt	CRISPR spacer
tttattcagtatatttaatttttctctcgaat	Protospacer
 ********* **** ********. .*.*.*

26. spacer 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP034113 (Staphylococcus epidermidis strain CDC120 plasmid pSTA492, complete sequence) position: , mismatch: 8, identity: 0.75

gttattcagtttattaaatttttccgccaagt	CRISPR spacer
tttattcagtatatttaatttttctctcgaat	Protospacer
 ********* **** ********. .*.*.*

27. spacer 3.8|4761952|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP050100 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b3, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcagttgctggaactggggcacgatctggt	CRISPR spacer
cgtcagttgctcgagctggggcagcgacatgt	Protospacer
*********** **.********  . *  **

28. spacer 3.1|4761524|32|NZ_CP022503|CRT matches to NC_014107 (Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence) position: , mismatch: 9, identity: 0.719

tggttgttaatgctggcgatatttttagcaca	CRISPR spacer
tggttgttaattctggcgatgtttatgttgtg	Protospacer
*********** ********.*** *. ....

29. spacer 3.1|4761524|32|NZ_CP022503|CRT matches to NZ_CP022152 (Citrobacter freundii strain 705SK3 plasmid p705SK3_1, complete sequence) position: , mismatch: 9, identity: 0.719

tggttgttaatgctggcgatatttttagcaca	CRISPR spacer
tggttgttaattctggcgatgtttatgttgtg	Protospacer
*********** ********.*** *. ....

30. spacer 3.1|4761524|32|NZ_CP022503|CRT matches to KC170280 (Uncultured bacterium plasmid pDS2, complete sequence) position: , mismatch: 9, identity: 0.719

tggttgttaatgctggcgatatttttagcaca	CRISPR spacer
tggttgttaattctggcgatgtttatgttgtg	Protospacer
*********** ********.*** *. ....

31. spacer 3.7|4761891|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP021438 (Bacillus thuringiensis strain C15 plasmid pBMB172, complete sequence) position: , mismatch: 9, identity: 0.719

caactgtattttgcgttattacgctgaaccag	CRISPR spacer
aatacatattttccgttattaccctgaacaaa	Protospacer
 *  ..****** ********* ****** *.

32. spacer 3.8|4761952|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP034911 (Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcagttgctggaactggggcacgatctggt	CRISPR spacer
ttccgtccgctggaactgggggccgatctggt	Protospacer
. .*. ..*************  *********

33. spacer 3.12|4762196|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NZ_CP015221 (Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taagttac---gccagtgcgggcgtgttgctcatc	CRISPR spacer
---actgcgcggcgagtgcgggcgcgttgctcatg	Protospacer
   ..*.*   ** **********.********* 

34. spacer 2.2|4761178|32|NZ_CP022503|CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 10, identity: 0.688

cggtaacaggcacgaatcaggcgtgtcggcgt	CRISPR spacer
cgctaacaggcacgaaccaggcgcacctttcg	Protospacer
** *************.******...*  .  

35. spacer 2.4|4761300|32|NZ_CP022503|CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 10, identity: 0.688

gggcggctgtcgtgggtattgagaacaccgct	CRISPR spacer
tgacggatgtcgtcggtattgagaacgaaaaa	Protospacer
 *.*** ****** ************.  .  

36. spacer 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder matches to LR135896 (uncultured phage genomic DNA containing rbcL region region) position: , mismatch: 10, identity: 0.688

gttattcagtttattaaatttttccgccaagt	CRISPR spacer
attattcggtctattaaatttttcaaatatac	Protospacer
.******.**.************* . .* ..

37. spacer 3.5|4761769|32|NZ_CP022503|CRT,CRISPRCasFinder matches to NC_049387 (Escherichia virus P2_4B2 genome assembly, chromosome: 1) position: , mismatch: 10, identity: 0.688

gttattcagtttattaaatttttccgccaagt	CRISPR spacer
ttggcacattttatgaaatttttccgccagca	Protospacer
 * .. ** ***** **************.  

38. spacer 2.1|4761117|32|NZ_CP022503|CRISPRCasFinder,CRT matches to MN034684 (Leviviridae sp. isolate H1_Rhizo_27_scaffold_801 RNA-dependent RNA polymerase (H1Rhizo27801_000001), hypothetical protein (H1Rhizo27801_000002), and hypothetical protein (H1Rhizo27801_000003) genes, complete cds) position: , mismatch: 11, identity: 0.656

gcgcggttctgcgccctgtttccagttcagta	CRISPR spacer
tatgggttctgcgctctgtttcccgtttgaag	Protospacer
    **********.******** ***... .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 544276 : 553447 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_2 639699 : 650972 10 Tupanvirus(12.5%) NA NA
DBSCAN-SWA_3 742318 : 753609 12 Burkholderia_phage(25.0%) integrase attL 736351:736366|attR 750920:750935
DBSCAN-SWA_4 1657462 : 1758126 98 Enterobacteria_phage(32.69%) portal,protease,terminase,tRNA,capsid,lysis,integrase,transposase,holin,head,tail attL 1681555:1681574|attR 1755199:1755218
DBSCAN-SWA_5 2167259 : 2205198 60 Salmonella_phage(59.65%) portal,coat,lysis,integrase,tail attL 2165738:2165784|attR 2205212:2205258
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage