CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011307	Intestinimonas butyriciproducens strain AF211 chromosome, complete genome	2 crisprs	csa3,cas3,cas14j,WYL,DEDDh,cas3HD,cas2,cas1,cas7,cas8c,cas5	2	10	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011307_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011307_1

570028-570153

Orphan

Consensus_repeat	Method
GGCCCCTCCCGCGGCGCAGGAGAAGGCCATTGAGGCGGCCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011307_1

>merge|NZ_CP011307|1|570028-570153|CRISPRCasFinder
GGCCCCTCCCGCGGCGCAGGAGAAGGCCATTGAGGCGGCCAAGGCGATGCAGGAGGCCGAGTAGGCACAGCGTTTCCCAGTGGGGCCCCTCCCGCGGCGCAGGAGAAGGCCATTGAGGCGGCCAAG

>NZ_CP011307|1|1|570028-570153|CRISPRCasFinder
GGCCCCTCCCGCGGCGCAGGAGAAGGCCATTGAGGCGGCCAAG	GCGATGCAGGAGGCCGAGTAGGCACAGCGTTTCCCAGTGG
GGCCCCTCCCGCGGCGCAGGAGAAGGCCATTGAGGCGGCCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011307.1\|WP_082635982.1\|563660_564632_+\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP011307.1\|WP_058117038.1\|561137_563501_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|274328
NZ_CP011307.1\|WP_033118750.1\|580656_580848_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011307.1\|WP_058117039.1\|564695_565292_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236608
NZ_CP011307.1\|WP_058117045.1\|572121_574314_-\|methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|236508
NZ_CP011307.1\|WP_058117043.1\|570294_571071_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|180270
NZ_CP011307.1\|WP_082636161.1\|559673_561071_+\|DUF1576-domain-containing-protein	unknown	unknown	gnl\|CDD\|377881
NZ_CP011307.1\|WP_033118751.1\|580043_580451_-\|methylmalonyl-CoA-epimerase	unknown	unknown	gnl\|CDD\|213772
NZ_CP011307.1\|WP_058117049.1\|578476_580018_-\|methylmalonyl-CoA-carboxyltransferase	unknown	unknown	gnl\|CDD\|130187
NZ_CP011307.1\|WP_058117036.1\|557840_558716_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|211339
NZ_CP011307.1\|WP_058117035.1\|556848_557823_+\|phosphoesterase-RecJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223691
NZ_CP011307.1\|WP_033116211.1\|558751_559648_+\|riboflavin-biosynthesis-protein-RibF	unknown	unknown	gnl\|CDD\|235536
NZ_CP011307.1\|WP_033118749.1\|580844_582044_-\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|238383
NZ_CP011307.1\|WP_033116202.1\|565345_565702_+\|DUF4180-domain-containing-protein	unknown	unknown	gnl\|CDD\|379371
NZ_CP011307.1\|WP_058117048.1\|578122_578458_-\|OadG-family-protein	unknown	unknown	gnl\|CDD\|377277
NZ_CP011307.1\|WP_058117047.1\|576305_577649_-\|sodium-ion-translocating-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|377182
NZ_CP011307.1\|WP_058117040.1\|565783_566665_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379219
NZ_CP011307.1\|WP_058117046.1\|574313_576203_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376584
NZ_CP011307.1\|WP_158453361.1\|566996_567791_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377924
NZ_CP011307.1\|WP_058117044.1\|571156_572008_-\|3-hydroxybutyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|180269

Protein	Function_ID	Function_description	E-value
NZ_CP011307.1\|WP_082635982.1\|563660_564632_+\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	1.61207e-126
NZ_CP011307.1\|WP_058117038.1\|561137_563501_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|274328	TIGR02865, Stage_II_sporulation_protein_E, stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs. [Cellular processes, Sporulation and germination].	7.48867e-105
NZ_CP011307.1\|WP_058117039.1\|564695_565292_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	2.23551e-53
NZ_CP011307.1\|WP_058117045.1\|572121_574314_-\|methylmalonyl-CoA-mutase	gnl\|CDD\|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0
NZ_CP011307.1\|WP_058117043.1\|570294_571071_+\|enoyl-CoA-hydratase	gnl\|CDD\|180270	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase.	5.57443e-99
NZ_CP011307.1\|WP_082636161.1\|559673_561071_+\|DUF1576-domain-containing-protein	gnl\|CDD\|377881	pfam07613, DUF1576, Protein of unknown function (DUF1576). This small family is found in several undescribed proteins. The alignment is distinguished by the frequent occurrence of conserved glycine and aromatic residues.	1.65135e-62
NZ_CP011307.1\|WP_033118751.1\|580043_580451_-\|methylmalonyl-CoA-epimerase	gnl\|CDD\|213772	TIGR03081, Methylmalonyl-CoA_epimerase_mitochondrial, methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.	1.49695e-57
NZ_CP011307.1\|WP_058117049.1\|578476_580018_-\|methylmalonyl-CoA-carboxyltransferase	gnl\|CDD\|130187	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP011307.1\|WP_058117036.1\|557840_558716_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|211339	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.	2.05724e-111
NZ_CP011307.1\|WP_058117035.1\|556848_557823_+\|phosphoesterase-RecJ-domain-containing-protein	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	6.3975e-49
NZ_CP011307.1\|WP_033116211.1\|558751_559648_+\|riboflavin-biosynthesis-protein-RibF	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.23681e-106
NZ_CP011307.1\|WP_033118749.1\|580844_582044_-\|thiolase-family-protein	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	0
NZ_CP011307.1\|WP_033116202.1\|565345_565702_+\|DUF4180-domain-containing-protein	gnl\|CDD\|379371	pfam13788, DUF4180, Domain of unknown function (DUF4180).	1.53238e-46
NZ_CP011307.1\|WP_058117048.1\|578122_578458_-\|OadG-family-protein	gnl\|CDD\|377277	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain.	1.39992e-10
NZ_CP011307.1\|WP_058117047.1\|576305_577649_-\|sodium-ion-translocating-decarboxylase-subunit-beta	gnl\|CDD\|377182	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit. Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.	0
NZ_CP011307.1\|WP_058117040.1\|565783_566665_+\|hypothetical-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	2.7286e-06
NZ_CP011307.1\|WP_058117046.1\|574313_576203_-\|hypothetical-protein	gnl\|CDD\|376584	pfam01642, MM_CoA_mutase, Methylmalonyl-CoA mutase. The enzyme methylmalonyl-CoA mutase is a member of a class of enzymes that uses coenzyme B12 (adenosylcobalamin) as a cofactor. The enzyme induces the formation of an adenosyl radical from the cofactor. This radical then initiates a free-radical rearrangement of its substrate, succinyl-CoA, to methylmalonyl-CoA.	6.56988e-157
NZ_CP011307.1\|WP_158453361.1\|566996_567791_-\|hypothetical-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	7.19718e-09
NZ_CP011307.1\|WP_058117044.1\|571156_572008_-\|3-hydroxybutyryl-CoA-dehydrogenase	gnl\|CDD\|180269	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	9.8815e-163

>NZ_CP011307.1|WP_158453361.1|566996_567791_-|hypothetical-protein
MRNRQQWRSFFSGVAVTALVFSLGVPALAATVRTLEATYSGIRITLDGREVDPKDANGAAVEPFAVDGTTYLPVRAVADALGLEVTWDQERQTVALSTPGGQAPVPEESASPYSRTDPVPLGTAHTFRYAKGDDDWTITMQISESLRGDKAWQALKAANQFNDPAPTGKEYVLVRLSAKVDEASDPDQAVAFHLAGFDLYSADSVQYTAFWTVVTPSPKFDGRVYQGGTLDGYLAFLVNQSDPAPKVVFGADYTGAGGAWFSLT
>NZ_CP011307.1|WP_058117040.1|565783_566665_+|hypothetical-protein
MCTCERALELISMGLDGEWKEEERQELEEHLAHCGDCRALARELEEAHVLLSELEEEEVPEGFRAAVMDRVRAEKTVPFPQHTPAGRRTRPWKRWASLAAVFAVVLLGARALPSVLGGGSSGASSAPAAADMAAPADAAPTEEGAAAGGAPAIQSFSAQAPQSDAAVQKNGIRAPEVQDRSVEPIQEAAPAETEENTGAEQIPLTEEERRTLTETCAAWLSTSGLEQAEEIDTSRMSAVPAAEADLAAAVWLPEVRVPEDGCWKVTLGGSEACAVLLWDPAAGAVLGWLPAAP
>NZ_CP011307.1|WP_033116202.1|565345_565702_+|DUF4180-domain-containing-protein
MEYTILGEKRDIALVHTDEVVLRDAASALEFMMSAQYETGCRKLILPKACVAEAFFSLRTGLAGEILQKFVNYQMRLAIVGEYDHYTSKPLQDFIRESNRGREICFLPSVEEAVRKLT
>NZ_CP011307.1|WP_058117039.1|564695_565292_+|sigma-70-family-RNA-polymerase-sigma-factor
MPTEQELVARAREGDERAFEQLVADNEKRVYNLCRRLAGNPEDGAELAQEAFLNAWRGLPRFQGESSFATWIYRLASNVCIDFLRKEKRRRSLSMTVSLDGEEGERQAELPDERDTPERHLERAELRRAVARGLDRLSPEHRQALVLRELQGFSYAEIGRALGLEEGTVKSRISRARLALRKEMISQGNFFDGTSSTK
>NZ_CP011307.1|WP_082635982.1|563660_564632_+|tRNA-dihydrouridine-synthase-DusB
MEIGTVKVASRLALAPMAGVTDLGFRTVCRALGCGYTVTEMVSAKALCYQDRKSVPLLKLGEGEHPAAAQIFGSDPKCMEEAAAIAGEVSGAEIIDINMGCPVPKVANSGDGSGLMRTPELAVRVAEAVIRGAGGRPVTVKMRLGWDKGSINCVEFARAMEEAGVSAVAVHGRTRAQQYAGTANWDQIRAVKEALSIPVLANGDVFSPRDAVRILQYTGADAAMIGRGAFGNPWLFRQARAALEGEEIPPLPPLTERCDTAMEQFRINALHKGEKIACLEARKQYCWYLKGVPYAGYWKERICHVETMAELEEITRGIKRDLN
>NZ_CP011307.1|WP_058117038.1|561137_563501_-|SpoIIE-family-protein-phosphatase
MAAKTALKVKAARLREEMTRTGRVVLRAPALVRGAECAIRFSLGAVLAGAEIFGGYAPFGLSMVGCSGSGLDGFAALLGACLGYLSFRGLTEGLRYVAAAMLIFSVSFAFFDIRLYRKSWFMPLVSALLSGATGFVYLGKGGWAPPTVIFFATELLLTAAGVYFYRIAFSPWTNPREDGGLTPRQLTSLLILGGTVLISLAQLQLLGESLSAGRVLAALAVMVCASQGGLGVGAAVGVAAGICMDLAAGESVFSCTVAYGFAGLMTGVFKGQSKTACAVAYVLSNAVTVLWAWDGGLRLSLLYEVFSASVLFLLLPDRLLRKAAARLSQERGDDTGDRAAAYVRERLRETAGAFRELYETMKGAFRRPGPNDGDMSAIFDRAADKVCRRCALRDACWQRDYTTTFNALNDALPAMTDRGRGEPGDFPQHFSTRCLHFPAFLAAANEELTAVLCRRQYKSRLQENRSAVCRQYGELSALLGAAAAELSAELTPDPTREKRLRQHLTALALEAEAWVYYDEAGHLRAEIEGPDLSSLRTDRERAALSDLLGLALREPEEGEAGELERLVFTQAEPFQAVMGVAARQKDGETVSGDAGALFKTDSGMLYILLCDGMGSGVAASRESKLAIRLLERFLKAGVDPESALKTLNSALALRNEEEGGFTTVDLLRLDLFTGEGALYKFGAAPTYIRRGGSVSRVTGCALPAGLSTGERAAPDVSRLQLEPGDVVVLVSDGVTDRRDDQWLRAALSAFNGESPKDLARTLVSPGEGETADDDRTALVVRVDRRQA
>NZ_CP011307.1|WP_082636161.1|559673_561071_+|DUF1576-domain-containing-protein
MRYKSMYRLILLYAAALMAAALIFDDPANILPGLWKIVTMQDVLITDYVQIAGPGAAFVNAGLVTAASVLLLYVAKDPLNGFTITEIGLMSGFALFGKNIFNIWPIILGTWLYAKLQKEPFSKYAAVALLATALSPLVSYMTFGSRHAHPLLGLLIGIGIGMVLPPLSAYTYKVQNGMNLYNMGFACGLLAMMLVPVLEAVGDAPDSAFFWATGNNGRFAPLMVVLCLAFLLCGFFLTGKPAWAVWAGYRRLLTSTGRAPSDYLRMLGAGPVLVNMGVNGLVCTGYILLVGGDLNGPTLGGILTVIGFSAYGKHVRNILPIIGGVMLGGAFMHFNLNDASVQLAALFGTTLAPFAGVFGWPAGVVAGFLHSAVVLQAGSVLAGVNLYNNGYSGGLIAIVLFPTVMAIFRHRKPELTPRDLFEVFQEDKPAPMERDLTPEEREPEGEPFPALREEEAYENCGPSER
>NZ_CP011307.1|WP_033116211.1|558751_559648_+|riboflavin-biosynthesis-protein-RibF
MNERKRVIALGFFDGVHKGHGALLSRVRDRAEELGAAPTAFTFDAHPSSRITGAVTPLINSAADRADLMRRLYGIQDVIVAHFDSMMRMDWRAFVAEYLVQEHGAVHVVAGHDFHFGYKGEGNPQRLEGLCRELGVGCDIIPKVEREGITVSSTYIRTLIAQGEMERAMEFLGHPHVLTDRVTHGKKLGTTLGFPTVNLRFPEGVLVPAHGVYVTRVWFGDGSSRPAVTNIGVRPTVDDGNRVNVEGYILDFSGDLYGQTIRMEFYKKLRGERKFPSLEALRAEVMKNAEETRKYFGP
>NZ_CP011307.1|WP_058117036.1|557840_558716_+|tRNA-pseudouridine(55)-synthase-TruB
MPNGIIIIDKPAGWTSMDVCAKLRGIFHEKRVGHAGTLDPMATGVLPVFLGRATRAVEFAEQTGKEYLAGLRLGLVTDTQDVTGRVLEERPVTCAPAEVEAALAAFRGEILQVPPMYSAVKIGGKKLYELARKGREVERKPRPVTIHALELLERTGAGDYLLRVRCSKGTYVRTLCHDVGAALGCGGTLSALRRTEAAGFGLDRAVRLEDVQAAADRGEAERLLLPVDAYFRDHPALTVGLREERAARNGAAFPWRGADGTYRVYGPAGDFLLLGELERGRMRTVKSFYEV
>NZ_CP011307.1|WP_058117035.1|556848_557823_+|phosphoesterase-RecJ-domain-containing-protein
MDYKAAAELLKKQDRILILTHRRPDGDTIGCAAGLCAALREQGKTACILPNEDATSLFTPYLGGYLAEEDWEPDFVVSVDIAGRSLFTPRGERYLARGIDLGIDHHPSYEGFARESCVDPGRAACGELIYDLIRQWGPVSPAAALPLYVAVATDTGCFMYSNTTPATHRVCADLMAVGIDFQGVNKRHFRTKSLKRLRLESLLVDGMDVHDGGATVIAAISLADMARLEATERDAEDIAAFLGQIEGVRTSVTIRELAPGECKLSVRTDQGLNATRVCALLGGGGHASAAGCTVMGTVAEAKAAILAAIRQVWVEDRDGASAGT
>NZ_CP011307.1|WP_058117043.1|570294_571071_+|enoyl-CoA-hydratase
MSYKNIKIEITGGIAVLTLNRPEVRNALDFETWEEIRSGMQELGRREGVQVIIFTGAGGKAFASGTDIRAIHDRTVAEQMNSEVSDTLYEISTHKRPVIAAIDGYALGGGCELAMACDIRIATKKSRFGQPEVGLGIIPGAGGTQRLQRLVGIGKAKELIFTGDIISAEEAERIGLVEKVVEDGTVMDAAMEMAKKIRAKGPVAITLAKKAIQVGADTDLYSGLCFERYAQALAYSTDDKAEGTQAFLEKRPPAFKGK
>NZ_CP011307.1|WP_058117044.1|571156_572008_-|3-hydroxybutyryl-CoA-dehydrogenase
MQKIVVIGGGTMGLDIAQVFARKSFDVVVRDIKDELIQASRTRLVKGLDKLVAKGKMDEAKKADILAHITFTTDLQEAADADLVVEAATENPTIKKGIFTDLDGICKPETILASNTSSISITEIGAVTKRPEQVIGMHFFNPATVMKLVEVIRGAKTSDETYSTIAALASELGKEPVEVNEAPGFVVNKILIPLVNEGIDLVYTGVASVEGVDKAMKLGANHPMGPLELGDLIGLDVCLAIMDVLYQETGDSKYRASLLLRKMVRAGYLGRKTGKGFYDYSRK
>NZ_CP011307.1|WP_058117045.1|572121_574314_-|methylmalonyl-CoA-mutase
MNKKPDFASMAFRDRSEDRAAGKAAWKAQIEKETGKSLEELISHTVEQIDVAPIYTAEDLKGMNHLDFMAGVPPFLRGPYPTMYVTRPWTVRQYAGFSTAEESNAFYRRNLAAGQKGLSIAFDLATHRGYDSDHPRVVGDVGKAGVAVDSILDMEILFSGIPLDQMSVSMTMNGAVLPIMAFYILAAEEQGVDKKLLSGTIQNDILKEFMVRNTYIYPPEASMRIIGDIFRYTSANMPKFNPISISGYHMQEAGATADIELGYTLADGLEYIRTGIKSGLTVDQFAPRLSFFWGIGKNYFMEVAKMRAARLLWAKIVHQFDPKNPKSMALRTHSQTSGWSLTAQDPFNNVARTCMEAMGAALGHTQSLHTNALDEAIALPTDFSARIARNTQLYIQDETKVCKVIDPWGGSYYVEALTDELVRRAWGHIQEVEELGGMAKAIDNGLPKMRIEEAAARRQAHIDSGKEKIVGLNYLTLDHEDAIDILEVDNTAVRQAQIARLEKLRSMRSQEKVDQCLNAITKSMETGEGNLLELAVEAARARASLGEISMAIEKVSGRHKAVIHSISGVYSGEFSDSAEIEEVRKMTDEFEKREGRRPRIMVAKMGQDGHDRGAKVVSTAYADMGFDVDIGPLFQTPEEAAQEAVDNDVHIVGMSSLAAGHKTLLPALVEELKKRGREDIMVIAGGVIPPQDYAFLYEHGATCIFGPGSIIPECAKEMLIALNKRLGYTD
>NZ_CP011307.1|WP_058117046.1|574313_576203_-|hypothetical-protein
MADKVYPPVTFEEFQPTSYEVWKEEAVTSLKGGDFQKKLFTKTYEGITLQPIYTKADMEYIQETSTFPGREDYLRGAAAAGYIADRWDMAQAVEGATPTQANADILHELKKGATAVNLTIGRKGVVLECSDDVRALFAGVDLAKTPVYLDCGAAAQRTLSLLSLADIDLKALKGCVGGDPYGTLLADGRLPVTMEKLFDEMAESAKLGAGVRTVLVDGLVYANGGATAVQEVGACMATASAYISAMLERGIDPDAAAQSIQFRFALGANFFMEIAKLRAARMVYAQIAEAYGASEAARKLHVFARTSAFTKTVYDPYVNILRTTTEAFSGVVGGVDAMEVAPLDEPFGSSEELTRRIARNIQVMMQEEFHLTQPVDPAGGSWYVETLTAQLAESIWAYFQNIESKGGIESAILSGALQDDVAATLAQRFKNLDTRTDRAVGVNMYANVLEQKLDRPAAKAVPAPAGPAVITAKPIEAHRWTERYEALRAKTEAWMEKTGKTLDVFLANMGPIPQHKARADFAAGFFEVAHFNMLRNDGFPTVDACADAAVKSGAPVVVICSTDATYPEIVPELARKIKTAKPDTTVLLAGAPAPEYKDAYLEAGVEDFIHVKANCYDILSKIQSTKGVE
>NZ_CP011307.1|WP_058117047.1|576305_577649_-|sodium-ion-translocating-decarboxylase-subunit-beta
MIDAIIKFAGDSGLASISWQQAVMLLVSFVLMYLAIVKQYEPLLLLPIAFGMFLANMPLGGIADDPSETVRLLSPEFLAPYLQQLGLDLSDKLSSSEMLSLTNILLNTSDSTGAALLAAGEHLVQNIAEDGSVVMEAVKSNYGGVVYYLRLGVKLGIYPPLIFLGVGAMTDFGPLLANPKSILLGGAAQLGIFGAFFLAILLGFTPQEAGSIGIIGGADGPTALFTTARLAEHLLGPIAVAAYSYMALVPVIQPPIMKALTTKKERQIVMKQLRPVSKTEKIIFPIAVTTLVGLVVPSTVPLLGMLMLGNLMKECGVVDRISKTAQNELMNIVTIFLGVSVGSTATAEAFLNIKTIGILVLGVLAFSLGTAGGVLMAKLMNKLMGGNAINPLIGSAGVSAVPMAARVSQVVGQKENPSNFLLMHAMGPNVAGVIGSAIAAGILLSYL
>NZ_CP011307.1|WP_058117048.1|578122_578458_-|OadG-family-protein
MRDAVILAVLGMGTVMILLYVINLMILVLGKVFGPKQTKKTENPKQGGAASSPAAAAPAQAAAPTEDEAIVAVLAAAVAAYLNTSPDRVRLVVRPIQTSAAWAQAGRLEQN
>NZ_CP011307.1|WP_058117049.1|578476_580018_-|methylmalonyl-CoA-carboxyltransferase
MDRIEDLRKRREKIEAGGGPKRVEKQHASGKMTARERITALLDPNSFVELDAFVEHRCTNFGMESMEAPGEGVVTGYGTIDNRLVYVYAQDFTVVGGSLGEMHAKKIWKVLDLAMEMGAPVIGLNDSGGARIQEAVDALAGYGGIFYRNTRASGVVPQISAIMGPCAGGAVYSPALTDFIFMVDKTSNMFITGPQVIKTVTGENVTAEKLGGAMTHNTTSGVAHFVYPTEAETLAAIRKLVGYLPLNNMETAPVVETSDSVNRICDALNSVMPESSNTPYDMKQVILSVVDDADFFEVQPYYAQNMITGFARIGGCSVGVLANQPKAMAGCLDINASDKAGRFISICDSFNIPLLTFVDVPGFLPGTSQEYGGIIRHGAKMLYAYSEATVPKITVVTRKAYGGSYLAMCSKDLGADMVFAWPTAEIAVMGPDGAANIIFKKEIDSAADPAAARKEKLDAYRAEFATPYQAAKRGYVDDVIEPCETRQKVAAALNMLASKRVSNPHKKHGNFPV
>NZ_CP011307.1|WP_033118751.1|580043_580451_-|methylmalonyl-CoA-epimerase
MNPTRVDHIGIGVPNLEEACKFYEALGLVSGGTEIVADQKVKVAFFPCGDSELELLESTAPDGPIAKFLEKNGGHAGIQHVAIRVPDIRAAIAEMKEKGYRMIDEEPRYGAGGASIAFVHPKSTGGVLIELTQRT
>NZ_CP011307.1|WP_033118750.1|580656_580848_+|hypothetical-protein
MLKMVGNGAHVAAAFMPDRHWGGGAPRLRLDRAAGEAPGIENDGAPAARLRRRGLGNGRILWI
>NZ_CP011307.1|WP_033118749.1|580844_582044_-|thiolase-family-protein
MKEVVIVSAVRTPIGSIGGTLKNTLPEKLLATAYEGAIEKAGISKDMFDEVIAGQAKQTTDAPNIARVSSLMLQIPEATPAYTVHRQCASGMQAMLSSMQQIQCDYSDIMLCGGVESMSTAPFYVRNVRFGVGNGNQALVDPNTESQPKSQPADIYGTFTMIQTADNVAKQFGVTREDCDQFALESQHRAVAAIDSGRFKDEIVPVVIPQRKKDPIVFDTDEYPKRDTNLEKMAKLKPIFADGVTTAGNASGRNDGASALVLMSADKAKELGLKPIARIIAGAAAGVDPRIMGMGPVAATRKLMKALEPKGLKLEDFGLVEINEAFAAQSVACVRELGLNPEIVNVNGGAIALGHPLGCSGARISTTLVHEMQKRDVQFGLASICIAGGLGMAMAFEKL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP011307_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011307_2

3073963-3077986

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGACN	CRT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	PILER-CR
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CRISPRCasFinder

59 spacers

cas2,cas1,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP011307_2

>merge|NZ_CP011307|2|3073963-3077986|CRT,PILER-CR,CRISPRCasFinder
GTGGAGATTCACGCCCCCGTGTGGGGGGCGACCCATTCGAGGCGGTCGATGCCTGTCATCCGCTTCACATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCAGTCCGGCCAGCCGCAGGATTTCTCCAATCTCCTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGGAGAGGACCTCTCTGGGGTCTCCGCCCTCCCGCAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGGAGCCGCCTGTCCTCCAACTCTCCATCCTCGTTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACACCACACCCCGGGCGGCCAGACTCCGGCGGCCGCTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCTTCCCGTTGGGGGCCGTGTATTCCACCCACACGTCATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTTTTTCGCCCAAACTTTGGGGGATAGTCAGTATAGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGATGCTACAGCTAGCCTTGATGCCACCGCCAGCAAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGCGCTGATACTTTTCCCAGGTGGCAACGTGAAGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCGTGCCAGAACGGCTCGTGGCCTGGGCCACTGGGTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTTAGCTCGCTCCAAAATACACGGAGCTGACGGTGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGAGGCTTGTCTGCGCGCTCTGGAACGATGTGGAATATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGTGGTTAACGGGATCGTGACCACGTCCCGGTATCTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCGTTTCTAAAGAATCTGTCGCTAACTGGGAAAAAGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGCATCACCTCATCACTCGGAGACAACCGGACAGAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTAGGGCTCGACTATCCCGAAGCTGAAGCTCTACCCATTTCAATCCACGCCCCCCGTGTGGGGGGCGACACCTCATCAAAAAGAGATTCATAGTCTCCATTCCCATTTCAATCCACGCCCCCCGTGTGGGGGGCGACATATTATACTCTGCGTAACGGAGAGCTATCTGAGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGGTGCCGCGTGGCTGCTGTGTGACGGTAGCAGTCATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGTGACAGGCCGAAAGGCCGGAAAGGAAAATTATTATATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTTCGTATACTCAGCCATAAAATCAATCCTTTCTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCTCCACGCCGGTAATCACCCTCCCCCTGAATGACAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGATGCGGGATGGAGTTTTCTGGGCGTAACAAGTGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTTCGTATACTCAGCCATAAAATCAATCCTTTCTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCTCCACGCCGGTAATCACCCTCCCCCTGAATGACAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCCTGGAAGAGCAGTCACGGGCAAGCCTGTCCCTGTGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTTCTGCCATTCGTTTTTCGGACTCTCCGATTCTGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCCCTTTGCCTCGTTCAGCCTGCTACCAATTTCCAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCGTAAGCGGATTCAACCATCGGAATAATTTCCGAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCATGGCGTGCCATCGGTGCGGCCTTGTCCCGCTTGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCTCTGTGTGCCGGCGCAGTTGCGCTCAGCGCGGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGTGTTCACCAGAGAGGAACTGAACCGCAATTCTGGCAAGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGAACTGGCAAAGAGTCGCAACAAGATGTGCAAGTATTGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCAACCAAGCATTAGTGTCGCATTGCTCTTTCTGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCAGCCAGCTTCTCAACCATGACGTACTTGTTGTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCCTCGATGTACCGAAGTTCCTCCCGGCCGTTCCGGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTGTATCCTCAGGCTGCATGGGAGCAACTGGTGAACATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCCACTGTGACCTTCGGCTCCAAATTGTGTTTCTGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTGACCCATCTGACGGTAAGCCACTTCTCGGGTGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCGTCTGCCGGTAGCGCCGCCTTATACTTTTTTGGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTGGAGGTCAGCCGTTACTACGCCACCGAGATCGACATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGTCTAGCACCAAGCGGGGCACGGAAGAGGTACACATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGTTGCGGAACTTGACCTTGTCCATAGGCACCACAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCCGATACAGGTACTCGTAATCTTCCGCATTTAGCTTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCATTCGGCGGAGCATACTCGGGTGGACCATCGGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCCCGGAATGCCTGCCAACCAATCGACAATGCTCTGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACATCCGGTTACGTAATGGAGCACATATTAGTTTGGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACAAATACTACCACCAATTACGGGGAATGTCAAGAATATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGGTGACGCTCATCGCTTTGATCTGCTTCTCCAGGAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTCGCTTAGCCCTCCTTACCTCCGGTAAGCTGTTTATATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCAGGGCCGGACGCTGGCGGGCGTGCTGCTTGATATTTCAATCCACGCCCCCCGTGTGGGGGGCGACAGAAGATCCCGGAGGACTGGGCAAATCTGCTCATATTTCAATCCACGCCCCCCGTGTGGGGGGCGACATGGAACTGTAGGCATCATTACAGCCCGTTCGTAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTAAGGCGGACAATGACGTGCTGGACGGTATCCGGAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCCGCTTTCTGATGGAGTGACTAGCTCCAGGTTTGACATTTCAATCCACGCCCCCCGTGTGGGGGGCGACAAGCCAGAGCCAACGTATCAACCAGGAACTGTTTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCATTTTGGTGTTCTATGCAAAAGGCATCGCAAACCGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACACGATTAGTGTCGTACTTGTAGCAGGCATTGTTGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCCACGATGGACTCGTGCCCACCACTGCCCCATGTGGATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC

>NZ_CP011307|2|1|3073963-3077986|CRT
GTGGAGATTCACGCCCCCGTGTGGGGGGCGACC	CATTCGAGGCGGTCGATGCCTGTCATCCGCTTCAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAGTCCGGCCAGCCGCAGGATTTCTCCAATCTCCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGAGAGGACCTCTCTGGGGTCTCCGCCCTCCCGCA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGAGCCGCCTGTCCTCCAACTCTCCATCCTCGTT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ACCACACCCCGGGCGGCCAGACTCCGGCGGCCGCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CTTCCCGTTGGGGGCCGTGTATTCCACCCACACGTC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTTTTCGCCCAAACTTTGGGGGATAGTCAGTATAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GATGCTACAGCTAGCCTTGATGCCACCGCCAGCAA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GCGCTGATACTTTTCCCAGGTGGCAACGTGAAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGTGCCAGAACGGCTCGTGGCCTGGGCCACTGGGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTAGCTCGCTCCAAAATACACGGAGCTGACGGTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GAGGCTTGTCTGCGCGCTCTGGAACGATGTGGAAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGGTTAACGGGATCGTGACCACGTCCCGGTATCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGTTTCTAAAGAATCTGTCGCTAACTGGGAAAAAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GCATCACCTCATCACTCGGAGACAACCGGACAGA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TAGGGCTCGACTATCCCGAAGCTGAAGCTCTACCC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ACCTCATCAAAAAGAGATTCATAGTCTCCATTCCC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATATTATACTCTGCGTAACGGAGAGCTATCTGAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGTGCCGCGTGGCTGCTGTGTGACGGTAGCAGTC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGACAGGCCGAAAGGCCGGAAAGGAAAATTATTAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTCGTATACTCAGCCATAAAATCAATCCTTTCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CTCCACGCCGGTAATCACCCTCCCCCTGAATGACA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GATGCGGGATGGAGTTTTCTGGGCGTAACAAGTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTCGTATACTCAGCCATAAAATCAATCCTTTCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CTCCACGCCGGTAATCACCCTCCCCCTGAATGACA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCTGGAAGAGCAGTCACGGGCAAGCCTGTCCCTGTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTCTGCCATTCGTTTTTCGGACTCTCCGATTCTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCCTTTGCCTCGTTCAGCCTGCTACCAATTTCCA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGTAAGCGGATTCAACCATCGGAATAATTTCCGA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CATGGCGTGCCATCGGTGCGGCCTTGTCCCGCTTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CTCTGTGTGCCGGCGCAGTTGCGCTCAGCGCGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGTTCACCAGAGAGGAACTGAACCGCAATTCTGGCAAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GAACTGGCAAAGAGTCGCAACAAGATGTGCAAGTATTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAACCAAGCATTAGTGTCGCATTGCTCTTTCTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAGCCAGCTTCTCAACCATGACGTACTTGTTGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCTCGATGTACCGAAGTTCCTCCCGGCCGTTCCGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGTATCCTCAGGCTGCATGGGAGCAACTGGTGAAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCACTGTGACCTTCGGCTCCAAATTGTGTTTCTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGACCCATCTGACGGTAAGCCACTTCTCGGGTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGTCTGCCGGTAGCGCCGCCTTATACTTTTTTGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGGAGGTCAGCCGTTACTACGCCACCGAGATCGAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTCTAGCACCAAGCGGGGCACGGAAGAGGTACAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTTGCGGAACTTGACCTTGTCCATAGGCACCACA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCGATACAGGTACTCGTAATCTTCCGCATTTAGCTT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CATTCGGCGGAGCATACTCGGGTGGACCATCGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCCGGAATGCCTGCCAACCAATCGACAATGCTCTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATCCGGTTACGTAATGGAGCACATATTAGTTTGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	AAATACTACCACCAATTACGGGGAATGTCAAGAAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGTGACGCTCATCGCTTTGATCTGCTTCTCCAGGA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TCGCTTAGCCCTCCTTACCTCCGGTAAGCTGTTTAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAGGGCCGGACGCTGGCGGGCGTGCTGCTTGAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	AGAAGATCCCGGAGGACTGGGCAAATCTGCTCAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATGGAACTGTAGGCATCATTACAGCCCGTTCGTA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TAAGGCGGACAATGACGTGCTGGACGGTATCCGGA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCGCTTTCTGATGGAGTGACTAGCTCCAGGTTTGAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	AAGCCAGAGCCAACGTATCAACCAGGAACTGTTT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CATTTTGGTGTTCTATGCAAAAGGCATCGCAAACCG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ACGATTAGTGTCGTACTTGTAGCAGGCATTGTTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCACGATGGACTCGTGCCCACCACTGCCCCATGTGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC

>NZ_CP011307|2|1|3074031-3077986|PILER-CR
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAGTCCGGCCAGCCGCAGGATTTCTCCAATCTCCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGAGAGGACCTCTCTGGGGTCTCCGCCCTCCCGCA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGAGCCGCCTGTCCTCCAACTCTCCATCCTCGTT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ACCACACCCCGGGCGGCCAGACTCCGGCGGCCGCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CTTCCCGTTGGGGGCCGTGTATTCCACCCACACGTC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTTTTCGCCCAAACTTTGGGGGATAGTCAGTATAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GATGCTACAGCTAGCCTTGATGCCACCGCCAGCAA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GCGCTGATACTTTTCCCAGGTGGCAACGTGAAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGTGCCAGAACGGCTCGTGGCCTGGGCCACTGGGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTAGCTCGCTCCAAAATACACGGAGCTGACGGTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GAGGCTTGTCTGCGCGCTCTGGAACGATGTGGAAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGGTTAACGGGATCGTGACCACGTCCCGGTATCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGTTTCTAAAGAATCTGTCGCTAACTGGGAAAAAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GCATCACCTCATCACTCGGAGACAACCGGACAGA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TAGGGCTCGACTATCCCGAAGCTGAAGCTCTACCC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ACCTCATCAAAAAGAGATTCATAGTCTCCATTCCC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATATTATACTCTGCGTAACGGAGAGCTATCTGAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGTGCCGCGTGGCTGCTGTGTGACGGTAGCAGTC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGACAGGCCGAAAGGCCGGAAAGGAAAATTATTAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTCGTATACTCAGCCATAAAATCAATCCTTTCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CTCCACGCCGGTAATCACCCTCCCCCTGAATGACA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GATGCGGGATGGAGTTTTCTGGGCGTAACAAGTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTCGTATACTCAGCCATAAAATCAATCCTTTCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CTCCACGCCGGTAATCACCCTCCCCCTGAATGACA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCTGGAAGAGCAGTCACGGGCAAGCCTGTCCCTGTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTCTGCCATTCGTTTTTCGGACTCTCCGATTCTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCCTTTGCCTCGTTCAGCCTGCTACCAATTTCCA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGTAAGCGGATTCAACCATCGGAATAATTTCCGA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CATGGCGTGCCATCGGTGCGGCCTTGTCCCGCTTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CTCTGTGTGCCGGCGCAGTTGCGCTCAGCGCGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGTTCACCAGAGAGGAACTGAACCGCAATTCTGGCAAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GAACTGGCAAAGAGTCGCAACAAGATGTGCAAGTATTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAACCAAGCATTAGTGTCGCATTGCTCTTTCTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAGCCAGCTTCTCAACCATGACGTACTTGTTGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCTCGATGTACCGAAGTTCCTCCCGGCCGTTCCGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGTATCCTCAGGCTGCATGGGAGCAACTGGTGAAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCACTGTGACCTTCGGCTCCAAATTGTGTTTCTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGACCCATCTGACGGTAAGCCACTTCTCGGGTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGTCTGCCGGTAGCGCCGCCTTATACTTTTTTGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGGAGGTCAGCCGTTACTACGCCACCGAGATCGAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTCTAGCACCAAGCGGGGCACGGAAGAGGTACAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTTGCGGAACTTGACCTTGTCCATAGGCACCACA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCGATACAGGTACTCGTAATCTTCCGCATTTAGCTT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CATTCGGCGGAGCATACTCGGGTGGACCATCGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCCGGAATGCCTGCCAACCAATCGACAATGCTCTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATCCGGTTACGTAATGGAGCACATATTAGTTTGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	AAATACTACCACCAATTACGGGGAATGTCAAGAAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGTGACGCTCATCGCTTTGATCTGCTTCTCCAGGA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TCGCTTAGCCCTCCTTACCTCCGGTAAGCTGTTTAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAGGGCCGGACGCTGGCGGGCGTGCTGCTTGAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	AGAAGATCCCGGAGGACTGGGCAAATCTGCTCAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATGGAACTGTAGGCATCATTACAGCCCGTTCGTA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TAAGGCGGACAATGACGTGCTGGACGGTATCCGGA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCGCTTTCTGATGGAGTGACTAGCTCCAGGTTTGAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	AAGCCAGAGCCAACGTATCAACCAGGAACTGTTT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CATTTTGGTGTTCTATGCAAAAGGCATCGCAAACCG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ACGATTAGTGTCGTACTTGTAGCAGGCATTGTTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCACGATGGACTCGTGCCCACCACTGCCCCATGTGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC

>NZ_CP011307|2|2|3074031-3077986|CRISPRCasFinder
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAGTCCGGCCAGCCGCAGGATTTCTCCAATCTCCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGAGAGGACCTCTCTGGGGTCTCCGCCCTCCCGCA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGAGCCGCCTGTCCTCCAACTCTCCATCCTCGTT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ACCACACCCCGGGCGGCCAGACTCCGGCGGCCGCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CTTCCCGTTGGGGGCCGTGTATTCCACCCACACGTC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTTTTCGCCCAAACTTTGGGGGATAGTCAGTATAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GATGCTACAGCTAGCCTTGATGCCACCGCCAGCAA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GCGCTGATACTTTTCCCAGGTGGCAACGTGAAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGTGCCAGAACGGCTCGTGGCCTGGGCCACTGGGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTAGCTCGCTCCAAAATACACGGAGCTGACGGTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GAGGCTTGTCTGCGCGCTCTGGAACGATGTGGAAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGGTTAACGGGATCGTGACCACGTCCCGGTATCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGTTTCTAAAGAATCTGTCGCTAACTGGGAAAAAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GCATCACCTCATCACTCGGAGACAACCGGACAGA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TAGGGCTCGACTATCCCGAAGCTGAAGCTCTACCC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ACCTCATCAAAAAGAGATTCATAGTCTCCATTCCC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATATTATACTCTGCGTAACGGAGAGCTATCTGAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGTGCCGCGTGGCTGCTGTGTGACGGTAGCAGTC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGACAGGCCGAAAGGCCGGAAAGGAAAATTATTAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTCGTATACTCAGCCATAAAATCAATCCTTTCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CTCCACGCCGGTAATCACCCTCCCCCTGAATGACA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GATGCGGGATGGAGTTTTCTGGGCGTAACAAGTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTCGTATACTCAGCCATAAAATCAATCCTTTCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CTCCACGCCGGTAATCACCCTCCCCCTGAATGACA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCTGGAAGAGCAGTCACGGGCAAGCCTGTCCCTGTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTCTGCCATTCGTTTTTCGGACTCTCCGATTCTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCCTTTGCCTCGTTCAGCCTGCTACCAATTTCCA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGTAAGCGGATTCAACCATCGGAATAATTTCCGA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CATGGCGTGCCATCGGTGCGGCCTTGTCCCGCTTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CTCTGTGTGCCGGCGCAGTTGCGCTCAGCGCGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGTTCACCAGAGAGGAACTGAACCGCAATTCTGGCAAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GAACTGGCAAAGAGTCGCAACAAGATGTGCAAGTATTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAACCAAGCATTAGTGTCGCATTGCTCTTTCTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAGCCAGCTTCTCAACCATGACGTACTTGTTGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCTCGATGTACCGAAGTTCCTCCCGGCCGTTCCGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGTATCCTCAGGCTGCATGGGAGCAACTGGTGAAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCACTGTGACCTTCGGCTCCAAATTGTGTTTCTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGACCCATCTGACGGTAAGCCACTTCTCGGGTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGTCTGCCGGTAGCGCCGCCTTATACTTTTTTGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGGAGGTCAGCCGTTACTACGCCACCGAGATCGAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTCTAGCACCAAGCGGGGCACGGAAGAGGTACAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTTGCGGAACTTGACCTTGTCCATAGGCACCACA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCGATACAGGTACTCGTAATCTTCCGCATTTAGCTT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CATTCGGCGGAGCATACTCGGGTGGACCATCGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCCGGAATGCCTGCCAACCAATCGACAATGCTCTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATCCGGTTACGTAATGGAGCACATATTAGTTTGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	AAATACTACCACCAATTACGGGGAATGTCAAGAAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGTGACGCTCATCGCTTTGATCTGCTTCTCCAGGA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TCGCTTAGCCCTCCTTACCTCCGGTAAGCTGTTTAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAGGGCCGGACGCTGGCGGGCGTGCTGCTTGAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	AGAAGATCCCGGAGGACTGGGCAAATCTGCTCAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATGGAACTGTAGGCATCATTACAGCCCGTTCGTA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TAAGGCGGACAATGACGTGCTGGACGGTATCCGGA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCGCTTTCTGATGGAGTGACTAGCTCCAGGTTTGAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	AAGCCAGAGCCAACGTATCAACCAGGAACTGTTT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CATTTTGGTGTTCTATGCAAAAGGCATCGCAAACCG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ACGATTAGTGTCGTACTTGTAGCAGGCATTGTTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCACGATGGACTCGTGCCCACCACTGCCCCATGTGG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011307.1\|WP_058118518.1\|3086586_3087153_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226851
NZ_CP011307.1\|WP_033116937.1\|3068231_3068663_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|376496
NZ_CP011307.1\|WP_058118515.1\|3080982_3082749_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP011307.1\|WP_052082543.1\|3066556_3067747_+\|bifunctional-chorismate-mutase/prephenate-dehydratase	unknown	unknown	gnl\|CDD\|270349
NZ_CP011307.1\|WP_033116941.1\|3073039_3073480_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|107228
NZ_CP011307.1\|WP_058118520.1\|3088529_3088868_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011307.1\|WP_158453398.1\|3070012_3070147_-\|DUF933-domain-containing-protein	unknown	unknown	gnl\|CDD\|236583
NZ_CP011307.1\|WP_058118514.1\|3067743_3068235_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NZ_CP011307.1\|WP_058118805.1\|3069652_3069901_+\|sporulation-transcriptional-regulator-SpoIIID	unknown	unknown	gnl\|CDD\|378813
NZ_CP011307.1\|WP_033116943.1\|3078451_3079483_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP011307.1\|WP_058118517.1\|3083481_3085872_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP011307.1\|WP_058118513.1\|3065569_3066547_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|143612
NZ_CP011307.1\|WP_058118516.1\|3082748_3083477_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP011307.1\|WP_082636132.1\|3088198_3088381_+\|excisionase-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|200128
NZ_CP011307.1\|WP_033116939.1\|3070244_3071339_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP011307.1\|WP_033116938.1\|3068647_3069499_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP011307.1\|WP_033116945.1\|3080130_3080982_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP011307.1\|WP_033116940.1\|3071600_3072953_+\|short-chain-fatty-acid-transporter	unknown	unknown	gnl\|CDD\|224942
NZ_CP011307.1\|WP_033116942.1\|3078156_3078447_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP011307.1\|WP_156113729.1\|3088035_3088206_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011307.1\|WP_058118518.1\|3086586_3087153_-\|hypothetical-protein	gnl\|CDD\|226851	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown].	9.32245e-15
NZ_CP011307.1\|WP_033116937.1\|3068231_3068663_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|376496	pfam01220, DHquinase_II, Dehydroquinase class II.	1.22737e-87
NZ_CP011307.1\|WP_058118515.1\|3080982_3082749_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	1.12013e-134
NZ_CP011307.1\|WP_052082543.1\|3066556_3067747_+\|bifunctional-chorismate-mutase/prephenate-dehydratase	gnl\|CDD\|270349	cd13631, PBP2_Ct-PDT_like, Catalytic domain of prephenate dehydratase from Chlorobium tepidum and similar proteins, subgroup 2; the type 2 periplasmic binding protein fold. Prephenate dehydratase (PDT, EC:4.2.1.51) converts prephenate to phenylpyruvate through dehydration and decarboxylation reactions. PDT plays a key role in the biosynthesis of L-Phe in organisms that utilize the shikimate pathway. PDT is allosterically regulated by L-Phe and other amino acids. The catalytic PDT domain consists of two similar subdomains with a cleft in between, which hosts the highly conserved active site. In gram-postive bacteria and archaea, PDT is a monofunctional enzyme, consisting of a catalytic domain (PDT domain) and a regulatory domain (ACT) (aspartokinase, chorismate mustase domain). In gram-negative bacteria, PDT exists as fusion protein with chorismate mutase (CM), forming a bifunctional enzyme, P-protein (PheA). The CM in the P-protein catalyzes the pericycle isomerization of chorismate to prephenate that serves as a substrate for PDT. The CM and PDT are essentail enzymes for the biosynthesis of aromatic amino acids in microorganisms but are not found in humans. Thus, both CM and PDT can potentially serve as drug targets against microbial pathogens. The PDT domain has the same structural fold as the type 2 periplasmic binding proteins (PBP2), many of which are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.85379e-99
NZ_CP011307.1\|WP_033116941.1\|3073039_3073480_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|107228	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic membrane.	1.64314e-48
NZ_CP011307.1\|WP_158453398.1\|3070012_3070147_-\|DUF933-domain-containing-protein	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	1.52481e-12
NZ_CP011307.1\|WP_058118514.1\|3067743_3068235_+\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	9.6994e-53
NZ_CP011307.1\|WP_058118805.1\|3069652_3069901_+\|sporulation-transcriptional-regulator-SpoIIID	gnl\|CDD\|378813	pfam12116, SpoIIID, Stage III sporulation protein D. This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.	1.50377e-36
NZ_CP011307.1\|WP_033116943.1\|3078451_3079483_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	3.45127e-180
NZ_CP011307.1\|WP_058118517.1\|3083481_3085872_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.73853e-50
NZ_CP011307.1\|WP_058118513.1\|3065569_3066547_+\|chorismate-synthase	gnl\|CDD\|143612	cd07304, Chorismate_synthase, Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fungi and the ciliated protozoan Euglena gracilis, are bifunctional, having an additional NADPH:FMN oxidoreductase activity. Recently, bifunctionality of the Mycobacterium tuberculosis enzyme (MtCS) was determined by measurements of both chorismate synthase and NADH:FMN oxidoreductase activities. Since shikimate pathway enzymes are present in bacteria, fungi and apicomplexan parasites (such as Toxoplasma gondii, Plasmodium falciparum, and Cryptosporidium parvum) but absent in mammals, they are potentially attractive targets for the development of new therapy against infectious diseases such as tuberculosis (TB).	2.63509e-169
NZ_CP011307.1\|WP_058118516.1\|3082748_3083477_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.5886e-89
NZ_CP011307.1\|WP_082636132.1\|3088198_3088381_+\|excisionase-family-DNA-binding-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	1.13351e-10
NZ_CP011307.1\|WP_033116939.1\|3070244_3071339_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP011307.1\|WP_033116938.1\|3068647_3069499_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	1.19327e-92
NZ_CP011307.1\|WP_033116945.1\|3080130_3080982_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	6.12687e-110
NZ_CP011307.1\|WP_033116940.1\|3071600_3072953_+\|short-chain-fatty-acid-transporter	gnl\|CDD\|224942	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism].	6.42753e-171
NZ_CP011307.1\|WP_033116942.1\|3078156_3078447_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.90345e-30

>NZ_CP011307.1|WP_033116941.1|3073039_3073480_-|Hsp20/alpha-crystallin-family-protein
MLPSIFSENLFDDFFGDSFEKNFFGEHNPLYGKRAKNLMKTDVKETESGYEVAVDLPGFKKDEVNVELNDGYLTISAAKGLDRDERDKKGRYIRQERYSGACSRSFYVGDVKPDEIKAGYEDGILRLEIPKREAKAASAPNRIAIE
>NZ_CP011307.1|WP_033116940.1|3071600_3072953_+|short-chain-fatty-acid-transporter
MFKKFTNGCVRVVNRWLPDAFLFAVILTIVTFVGSMIGTKQTPLELVDAWGNSKGFWGLLSFSMQMALVLVFGSAMASAKICKRFLGAIASVAKDKKSAILVTTFVSTVCCWLNWGFGLIAGALLAKEVARRVRDVDYPLLIASAYSGFVIWHAGLSGSIPLQMAAEGGTEILGIFYSAPITDTVLHPANLIMVAVILFLMPFVNYAMHPDAEHTIIVDPARLVDEEERTYTVGTPAEKMEHSKILWAITLLLGFAYIIYYFATKGFNLDLNIVNMIFLFLGILLHGDLRKYVDAIGDAASGAAGILLQFPFYAGIMGLMVAQNPETGVSLAGIIADFFVSISNDVTFPMLTFLSAGLINFFVPSGGGQWAVQAPIVMPAATTMGIEYGRAAMAIAWGDQWTNMVQPFWALPILGMAGLSARNIMGYLVIVTIFTGVVACLGFLGWAMFF
>NZ_CP011307.1|WP_033116939.1|3070244_3071339_-|redox-regulated-ATPase-YchF
MKLGIVGLPNVGKSTLFNAITNAGAESANYPFCTIDPNVGMVAVPDHRLDWLSDFYKPKKTTPAVIEFVDIAGLVKGASKGEGLGNKFLSNIRATDAVVHVVRCFDDPNVIHVEGSTDPLRDIEIIDIELIMADMEMVQRRVEKAAKLVKSGDKKAAREAEVFQELLTWLNEGRSARSYECSEEDAALIATSELLSLKPVIYAANLDEAGFSDYENNAYYKQVSEVAAKEGAQVIPVCAQLEAEIAELESDEKKMFLDDLGIAESGLDRLIKASYALLGLISFLTSGEDECRAWTIKQGTKAPQAAGKIHSDFERGFIRAEVVAFEDLVKCGDLVHAKEKGLVRSEGKEYVMQDGDVVLFRFNV
>NZ_CP011307.1|WP_158453398.1|3070012_3070147_-|DUF933-domain-containing-protein
MPRADKIIRVPAGACACGRTDLVRSEGKEYVMQDGDVVLFRFNV
>NZ_CP011307.1|WP_058118805.1|3069652_3069901_+|sporulation-transcriptional-regulator-SpoIIID
MKGNIEERACQLALYIIENKATVRAAAQKFGISKSTVHKDLQDRLPAFNKPLYLQVKAVLDENKAERHIRGGIATRKKYKGD
>NZ_CP011307.1|WP_033116938.1|3068647_3069499_+|shikimate-dehydrogenase
MHVELKNTTRKLCVIGDPVLHSKSPLIQNTMLSALGLDYIYLCQPVSAGRAAEWLSAAKVAGYAGFNATMPHKLDLVPLMDELDEDARLYQSVNTVCIKEGKVYGYNTDGRGFLQALLDAGVDPAGKRVLLLGAGGAAKAVALKLVQQGCVSLTVCNRTLERAEMLCQFNAAVMRAVGFDAATLRLEASRADLLVNCTSLGMGGVAGQFEDFHFLDALPHAAAVCDLIYHPAETELLAQARLRGHRTLNGLGMLIHQAVFALEHFTDTQLDGAAMRALVEGVL
>NZ_CP011307.1|WP_033116937.1|3068231_3068663_+|type-II-3-dehydroquinate-dehydratase
MKFLIINGPNLNLLGQREPGIYGEENYTALCGRLRAFASAHQSTAECFQSNHEGAIIDAIHAAQGNYDAIIMNPGAFTHYSYAILDALKAVRIPCIEVHISNVHQREEFRHRSVTAPACVGQICGLGLYGYEAAMRYFLCMSN
>NZ_CP011307.1|WP_058118514.1|3067743_3068235_+|shikimate-kinase
MKNIILIGMMGCGKTTCGGLLSRRLDRELVDTDALIAAREGRSIPEIFAAQGEDRFRELERGVAEELARREGLVVACGGGLPLRDDAMAPLKSSGTVVFLCRDPGETFDTVPMDARPLAQEGREAFLARFRNREPVYRFWADQIVTDFSSPEATVNAILEGLS
>NZ_CP011307.1|WP_052082543.1|3066556_3067747_+|bifunctional-chorismate-mutase/prephenate-dehydratase
MSELDTLRSEIDEIDTQLTALFLRRMDVTARVGAYKQENGLPVLDEAREQEVLARKSAAVSDPARRADVTALYETIMGLSRRQQRNLVNEAGNEGYRQIREAISHSRAPLTAPRVLYQGEPGAYADEAAALFFGEDVPRAHVETWEDIFLALREGRADYGVLPIENSSTGSISQVYDLLAQYGAYIVGEQTVRVEHCLVALPGACLDGIREVCSHEQGLRQCAEFLKAHPDWRAVPRLNTAESAKYVAERGDLTLAAICSRRAARLYGLDILAERIHFNAQNDTRFVVVSPVMERRAGCDKVSALFVLPHRSGSLHEIMTIFAVNGLNMMKLESRPIVGRSWEYLFFVDFTGDLAAPGMDGVLLELSQTAEGFRVLGNYKEACGAACSDGQGGGLK
>NZ_CP011307.1|WP_058118513.1|3065569_3066547_+|chorismate-synthase
MKYIIFGESHGPAIGVALEGLPSGIALDMDFIASEMARRVPGQNAMTTARREKDAPEILSGVFEGRTTGTPLCAVIRNTDTHSQDYAKLRTLPRPGHADYTGFVRYAGWGDYRGGGHFSGRLTAPLVFAGAVAKLVLRERGVAVTGRISNVAGIPDPTPEQMEAAILAAKAELDSVGGRIRCSVTGLPVGLGSPDFGCNVEGIFSQYLFAVPAVKAVGFGLGEGFAALRGSQANDPFYLDGGTVRTRTNHSGGINGGITNGMPVEFEVTLRPTPSIARRQQTVDLSAGREAELEITGRHDPCIVPRALPVIEAAAALAACELLGM
>NZ_CP011307.1|WP_033116942.1|3078156_3078447_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTEDAAGRKRLRQIAKQCVNYGQRVQNSVFECLLDAAQCRMLQAKLCKIMDPEKDSLRFYYLGNRYENKIEHFGVKASYNPEDVLML
>NZ_CP011307.1|WP_033116943.1|3078451_3079483_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKHLLNTLYILSEDIYLSLDGENVVANRDKQVVARYPLHTLQNIITFSYAGASPALMGVCAQRQIGLSFCTPRGKFLARVCGEGNGNVLLRRTQYRTGDDPTQCCQISRTMIFGKLFNARWSIERTRRDHGLRVDGEKLVSASKQIYGLLSQVKEVSAPEELRGLEGVGASAYFSVFDEMILGDKETFSFQGRSRRPPLDAVNAMLSFAYSLLAHDCASALESVGLDSYVGFLHRDRPGRTSLALDLMEELRPCMADRFVLTLINNRQVKAGDFQYMESGAVLLADGGRKTFLKHWQEKKKETLTHPYLEEKLPWGMIPYTQALLLARYLRGDLDAYPPFLWK
>NZ_CP011307.1|WP_033116945.1|3080130_3080982_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MGILQNKIDFVAFVSATMANPNGDPLNGNSPRTDYNGLGEMSDVCIKRKLRNRMQDLGQAVFVQSADRCDDGCGSLSDRASAVLGKAKEFKDSEDYAQKACETWLDVRSFGQVFAFKDTKGMSIGVRGPVSVHQGVSVSPVQIEDMQITKSVNGESNDKGRSSDTMGMKHFVRFGLYKIKGSINVQLAEKTGFTEKDADILKECLRTLFVNDASSARPEGSMEVVRLYWFHHNCKDGQYSSAKVHRSVQAELIASDAIPACAEDYKITLEPLAGLEPEILNGI
>NZ_CP011307.1|WP_058118515.1|3080982_3082749_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MGLLQKACETYDAMAGRVGIMYEKEKEPLAPISHMMARPQIKITLDQNGNFITAQALEKDVPKIIIPATEESAGRTVKAAELPHPLCDYLRYLLPQNQVEYSHYVSQLSAWVNSPFSHPKLHAILNYVQDRTILADLSQAGITAEEKAMVCWEVNGLGEKLNGPCWTDQTLMKAFIDYTAAKRADTPPALCMVSGEMEAPAGQHPKGIIPINGNAKLISANDSSGFTYRGRFDDAAQAATVGYTASQKAHNALRWLVANQSVSFGGRTFVCWSPQGIQIPKVTGPMGRKGGGNVQRAATPSQYQKQLWEALSGWKEDLRPPAGVVIAAFDAATTGRLAVTYYNELLASDFLDRLHDWEVSCCWENGPYGIQSPSLFQIVSWAFGTPRNGKAEIDDRILKQQMQRLVACRVDKAPFPLDIERALVEKASHLLLYEGENRQKLLFTACAAIRKYHSKEKWDMALDKNCSDRSYLFGRLLAIADAIENSTYTDEDRRETNAIRMQKVFTLRPMATWSALWDKLAPYNKRLAQSKPKLYRYYQNMIDDILDSFSPSDSTLNQQLDDIYLLGYSHQRAYRNEKTDQQETEEES
>NZ_CP011307.1|WP_058118516.1|3082748_3083477_-|type-I-C-CRISPR-associated-protein-Cas5
MRHPNIVEFQVTGDYGLFSDPIMRVGGEKSSYQVPTYEALKGILSSVYWKPTLIWYIDAVRVMNQIQTEVKGIRPIHYQDGKNDLSYYTYLKNCRYQIRAHFEWNENRPELAQDRSENKHHNIAKRMIEKGGRRDIFLGARECQGYVEPCVFGEEPSAYDKLPELSFGLMYHGITYADEAYSTETQGKMTARFWYPVMKQGVITFPRPEDCPLTKPLRKMEMKPFGIDMENFSGLREFGEVE
>NZ_CP011307.1|WP_058118517.1|3083481_3085872_-|CRISPR-associated-helicase/endonuclease-Cas3
MESYLAHIQRDPSDKIIAVQSVSKHCHNTARYAAAALEPVGLSAAGEAVGLLHDLGKYSEQFQDYIKDGAGTRGSVNHTFAGVRLLLERYHHEPPEDLADIAAELLALAVGGHHGGLFDCVDDQQKNGFRHRLTKKEIGYEEARDNFFRFCINQEELDQQFQAALNELTPVLEHICAMTGEEVSDERYDQETAFYSGLLARLLLSAVIEGDRRDTAISMNGAAFPPARSGEELEQMWFTLLTRTEEKLNAFSSKTPIDQARRMISNQCGQAAEQAGGVFRLSVPTGGGKTLSGLRFALAHARKYRKQRIIFTSPLLSILDQNAKEIRKYIQDDSLILEHHSNLVRTEENSEQLDERELLTETWEAPVIITTLVQLLNILFSGKTTCIRRFHSLCNSVIVIDEVQTVPSKMLSMFSLAVNFLAEICGVTVVLCSATQPCTEQIEHPIHGPIRDIVPYDPALWQVFQRTDIQSVGSMSLEQIADFAVKKLEHVDSLLIVCNKKNQSEHLYSLLKDKSFALFSLSAAMCVTHRRDTLNKLKSALGQSSQKTVCVSTQVIEAGVDISFGCVIRLSAGMDSVVQAAGRCNRSGEAGPGVLAPVYLVECQQENLSHLPDIQLGKDATQELIAEFAARPEQFQHRLDSDASIEYYYRALYRREPAGHHDYCVKDRPSLFSLLSLNGQYAQEHPYYFNQAFRLAGTLFEVFEENTTDVVVPYKESEALIAGLCSEKAQRDPFYLRSLLEAAKPYTVSLYQYQIDRLNEEHSLIPLQGGALGLSGHYSAETGFSMGESNLEFLWR
>NZ_CP011307.1|WP_058118518.1|3086586_3087153_-|hypothetical-protein
MNETIKFANREEFRRWLHEHCLSNVGGIWLLFGKAGGPKTIKAGEALEEALCFGWIDGQMERIDDKTYKKYFSLRRKNSKWSEKNKALVKKLEERGLMTDFGREKIAEAKRNGQWDALNPLAIIAEEQIARLSALLKGYEPAYTNFQAMSMSVKETYTRAYLDAKTEVGRKKRIAWMVDRLNKNLKPM
>NZ_CP011307.1|WP_156113729.1|3088035_3088206_+|hypothetical-protein
MAHPGVGAEWYQERIQKGRSPYQARKEVAKLLGHGRDDVTHIYLASLKKKGGDGDG
>NZ_CP011307.1|WP_082636132.1|3088198_3088381_+|excisionase-family-DNA-binding-protein
MDRRPTSYDDLPLTLSVRELMPILSVGRSTAYELIHSGQIRSVRIGRRICIPKAEVLRFL
>NZ_CP011307.1|WP_058118520.1|3088529_3088868_+|hypothetical-protein
MPSYLGMKEKKDNKRRAEAFLKQEMDKPEKIQDHHLTGTDQPFLPFMEQWLNEVERYSIRVTTLEQYKAVFRNVISIFPAFQNVALRGLARSLRPALHSLPRAASQRSHTAP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP011307_2	2.31\|3076024\|33\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3076024-3076056	33	NZ_CP011307.1	1653763-1653795	0	1.0
NZ_CP011307_2	2.32\|3076090\|39\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3076090-3076128	39	NZ_CP011307.1	2482342-2482380	0	1.0

1. spacer 2.31|3076024|33|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to position: 1653763-1653795, mismatch: 0, identity: 1.0

ctctgtgtgccggcgcagttgcgctcagcgcgg	CRISPR spacer
ctctgtgtgccggcgcagttgcgctcagcgcgg	Protospacer
*********************************

2. spacer 2.32|3076090|39|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to position: 2482342-2482380, mismatch: 0, identity: 1.0

gtgttcaccagagaggaactgaaccgcaattctggcaag	CRISPR spacer
gtgttcaccagagaggaactgaaccgcaattctggcaag	Protospacer
***************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011307_2	2.1\|3073996\|35\|NZ_CP011307\|CRT	3073996-3074030	35	JQ680365	Unidentified phage clone 2200_scaffold2278 genomic sequence	8555-8589	2	0.943
NZ_CP011307_2	2.47\|3077106\|34\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3077106-3077139	34	MN582059	Podoviridae sp. ct2cs2, complete genome	15127-15160	7	0.794
NZ_CP011307_2	2.51\|3077378\|33\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3077378-3077410	33	NZ_CP020385	Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence	180154-180186	7	0.788
NZ_CP011307_2	2.31\|3076024\|33\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3076024-3076056	33	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	395232-395264	8	0.758
NZ_CP011307_2	2.31\|3076024\|33\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3076024-3076056	33	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	463763-463795	8	0.758
NZ_CP011307_2	2.47\|3077106\|34\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3077106-3077139	34	CP033373	Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence	143413-143446	8	0.765
NZ_CP011307_2	2.51\|3077378\|33\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3077378-3077410	33	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	518386-518418	8	0.758
NZ_CP011307_2	2.51\|3077378\|33\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3077378-3077410	33	NZ_AP014801	Rhodovulum sulfidophilum plasmid Plasmid1 DNA, complete genome, strain: DSM 2351	93808-93840	8	0.758
NZ_CP011307_2	2.38\|3076501\|34\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3076501-3076534	34	LT968167	Pseudomonas phage GP100 genome assembly, plasmid: I	44645-44678	9	0.735
NZ_CP011307_2	2.38\|3076501\|34\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3076501-3076534	34	LT986460	Pseudomonas phage GP100 genome assembly, chromosome: 1	44643-44676	9	0.735
NZ_CP011307_2	2.47\|3077106\|34\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3077106-3077139	34	MK504446	Lactobacillus phage SAC12B, complete genome	119098-119131	9	0.735
NZ_CP011307_2	2.51\|3077378\|33\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3077378-3077410	33	NZ_AP017657	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_3, complete sequence	24004-24036	9	0.727
NZ_CP011307_2	2.5\|3074267\|35\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3074267-3074301	35	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1906735-1906769	10	0.714
NZ_CP011307_2	2.5\|3074267\|35\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3074267-3074301	35	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1720565-1720599	10	0.714
NZ_CP011307_2	2.22\|3075417\|35\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3075417-3075451	35	NZ_CP018048	Pseudomonas aeruginosa strain DN1 plasmid unnamed1, complete sequence	21983-22017	10	0.714
NZ_CP011307_2	2.25\|3075618\|35\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3075618-3075652	35	NZ_CP018048	Pseudomonas aeruginosa strain DN1 plasmid unnamed1, complete sequence	21983-22017	10	0.714
NZ_CP011307_2	2.34\|3076233\|33\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3076233-3076265	33	NZ_CP010957	Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence	250994-251026	10	0.697
NZ_CP011307_2	2.51\|3077378\|33\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3077378-3077410	33	NC_011892	Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence	198781-198813	10	0.697
NZ_CP011307_2	2.56\|3077715\|34\|NZ_CP011307\|CRT,PILER-CR,CRISPRCasFinder	3077715-3077748	34	NZ_CP045385	Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence	286711-286744	11	0.676

1. spacer 2.1|3073996|35|NZ_CP011307|CRT matches to JQ680365 (Unidentified phage clone 2200_scaffold2278 genomic sequence) position: , mismatch: 2, identity: 0.943

cattcgaggcggtcgatgcctgtcatccgcttcac	CRISPR spacer
cattcaaggcggtcgatgcccgtcatccgcttcac	Protospacer
*****.**************.**************

2. spacer 2.47|3077106|34|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to MN582059 (Podoviridae sp. ct2cs2, complete genome) position: , mismatch: 7, identity: 0.794

atccggttacgtaatggagcacatattagtttgg	CRISPR spacer
aaatggttacgtaatggagcatagattagttatg	Protospacer
*  .*****************.* *******  *

3. spacer 2.51|3077378|33|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020385 (Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence) position: , mismatch: 7, identity: 0.788

cagggccggacgctggcgggcgtgctgcttgat	CRISPR spacer
ctgggccggacgctggcgggggtgctgcggccc	Protospacer
* ****************** *******    .

4. spacer 2.31|3076024|33|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

ctctgtgtgccggcgcagttgcgctcagcgcgg	CRISPR spacer
tgcaaggtgccggcgcttttgcgctcagcgcag	Protospacer
. * . **********  *************.*

5. spacer 2.31|3076024|33|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 8, identity: 0.758

ctctgtgtg---ccggcgcagttgcgctcagcgcgg	CRISPR spacer
---tgaaagagcccggcgcaggtgcgctcggcgcgg	Protospacer
   ** . *   ********* *******.******

6. spacer 2.47|3077106|34|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to CP033373 (Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

atccggttacgtaatggagcacatatt----agtttgg	CRISPR spacer
ctccggttacgtaatggtgcacatctttaaaaat----	Protospacer
 **************** ****** **    *.*

7. spacer 2.51|3077378|33|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 8, identity: 0.758

cagggccggacgctggcgggcgtgctgcttgat	CRISPR spacer
ggcggccagacgctggcgggcctgctgctgaac	Protospacer
 . ****.************* ******* .*.

8. spacer 2.51|3077378|33|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP014801 (Rhodovulum sulfidophilum plasmid Plasmid1 DNA, complete genome, strain: DSM 2351) position: , mismatch: 8, identity: 0.758

cagggccggacgctggcgggcgtgctgcttgat	CRISPR spacer
ctggggcggacgctggcgggggtgctgcggccc	Protospacer
* *** ************** *******    .

9. spacer 2.38|3076501|34|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to LT968167 (Pseudomonas phage GP100 genome assembly, plasmid: I) position: , mismatch: 9, identity: 0.735

ccactgtgaccttcggctccaaat----tgtgtttctg	CRISPR spacer
ccactgtcaccttcgactccaaatacaaagagct----	Protospacer
******* *******.********     * *.*

10. spacer 2.38|3076501|34|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to LT986460 (Pseudomonas phage GP100 genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.735

ccactgtgaccttcggctccaaat----tgtgtttctg	CRISPR spacer
ccactgtcaccttcgactccaaatacaaagagct----	Protospacer
******* *******.********     * *.*

11. spacer 2.47|3077106|34|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to MK504446 (Lactobacillus phage SAC12B, complete genome) position: , mismatch: 9, identity: 0.735

atccggttacgtaatggagcacatattagtttgg	CRISPR spacer
agaatgcaaagtaatggcgcacatattaatttgg	Protospacer
*    *. * ******* **********.*****

12. spacer 2.51|3077378|33|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP017657 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_3, complete sequence) position: , mismatch: 9, identity: 0.727

cagggccggacgctggcgggcgtgctgcttgat	CRISPR spacer
gacatcgagacgctggcgggcgcgctgctcgac	Protospacer
 * . * .**************.******.**.

13. spacer 2.5|3074267|35|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 10, identity: 0.714

accacaccccgggcggccagactccggcggccgct	CRISPR spacer
cgatcaccccgggcggccactctccggcgacgacc	Protospacer
    ***************  ********.* .*.

14. spacer 2.5|3074267|35|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.714

accacaccccgggcggccagactccggcggccgct	CRISPR spacer
cgatcaccccgggcggccactctccggcgacgacc	Protospacer
    ***************  ********.* .*.

15. spacer 2.22|3075417|35|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP018048 (Pseudomonas aeruginosa strain DN1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

ctccacgccggtaatcaccctccccctgaatgaca	CRISPR spacer
gtcgaagccggtaatcaccctccccctcgaaactt	Protospacer
 ** * ********************* .* . .

16. spacer 2.25|3075618|35|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP018048 (Pseudomonas aeruginosa strain DN1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

ctccacgccggtaatcaccctccccctgaatgaca	CRISPR spacer
gtcgaagccggtaatcaccctccccctcgaaactt	Protospacer
 ** * ********************* .* . .

17. spacer 2.34|3076233|33|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010957 (Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence) position: , mismatch: 10, identity: 0.697

caaccaagcattagtgtcgcattgctctttctg	CRISPR spacer
aagaatcgcactagtgtcgctttgctctttcca	Protospacer
 *.    ***.********* **********..

18. spacer 2.51|3077378|33|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 10, identity: 0.697

cagggccggacgctggcgggcgtgctgcttgat	CRISPR spacer
tcgggccagacgctggcgggcctgctcgtcttc	Protospacer
. *****.************* ****  *.  .

19. spacer 2.56|3077715|34|NZ_CP011307|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP045385 (Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence) position: , mismatch: 11, identity: 0.676

aagccagagccaacgtatcaaccaggaactgttt	CRISPR spacer
cgatcttgcccaaagtatcacccaggaactgttc	Protospacer
 ...*  . **** ****** ************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

464318 : 493755

unidentified_phage(29.41%)

head,tail,portal,terminase,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158453351.1\|464318_466631_-	DUF3987 domain-containing protein	A0A0K0N7B1	Gordonia_phage	7.3e-12	25.0
WP_158453352.1\|466590_466773_-	hypothetical protein	NA	NA	NA	NA
WP_058116971.1\|466895_467822_+	hypothetical protein	NA	NA	NA	NA
WP_158453353.1\|467818_469306_+	recombinase family protein	A0A2K9V2Y5	Faecalibacterium_phage	1.3e-89	38.7
WP_033118895.1\|469809_470331_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.0e-22	42.7
WP_033118894.1\|470410_470875_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.8e-37	50.0
WP_052082855.1\|470981_471440_-	ImmA/IrrE family metallo-endopeptidase	Q0H245	Geobacillus_phage	2.1e-19	37.0
WP_033118893.1\|471440_471896_-	helix-turn-helix transcriptional regulator	A0A2P1JU09	Anoxybacillus_phage	1.3e-10	30.3
WP_058116972.1\|472125_472311_+	hypothetical protein	NA	NA	NA	NA
WP_052082853.1\|472307_472595_+	hypothetical protein	NA	NA	NA	NA
WP_129868767.1\|472711_472939_+	hypothetical protein	NA	NA	NA	NA
WP_033118891.1\|472931_473339_+	hypothetical protein	NA	NA	NA	NA
WP_158453354.1\|473428_473602_-	hypothetical protein	NA	NA	NA	NA
WP_156113809.1\|473791_473962_-	hypothetical protein	NA	NA	NA	NA
WP_058116975.1\|474038_474647_+	hypothetical protein	NA	NA	NA	NA
WP_147586043.1\|474568_475684_+	hypothetical protein	A0A2H4IZQ5	uncultured_Caudovirales_phage	9.9e-07	39.5
WP_058116977.1\|475701_476322_-	hypothetical protein	NA	NA	NA	NA
WP_033118888.1\|476588_476825_+	hypothetical protein	NA	NA	NA	NA
WP_058116978.1\|476817_478074_+\|terminase	terminase	B6CXD2	Clostridium_phage	8.1e-98	45.8
WP_158453355.1\|478173_479520_+\|portal	phage portal protein	H7BWE8	unidentified_phage	1.2e-152	56.6
WP_058116980.1\|479516_479972_+	hypothetical protein	NA	NA	NA	NA
WP_033118885.1\|480214_481312_+	hypothetical protein	A0A2I7RQ09	Vibrio_phage	6.3e-14	29.9
WP_058116981.1\|481358_481727_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_058116982.1\|481729_482116_+	hypothetical protein	NA	NA	NA	NA
WP_033118882.1\|482129_482573_+	hypothetical protein	NA	NA	NA	NA
WP_058116983.1\|482557_482764_+	hypothetical protein	NA	NA	NA	NA
WP_058116984.1\|482764_484099_+\|tail	phage tail sheath protein	H7BWE1	unidentified_phage	2.5e-113	66.9
WP_033118880.1\|484118_484577_+\|tail	phage tail tube protein	A0A0K2CNG3	Brevibacillus_phage	9.3e-36	51.0
WP_033118879.1\|484651_485059_+	hypothetical protein	NA	NA	NA	NA
WP_143433371.1\|485417_485567_+	xylan 1,4-beta-xylosidase	NA	NA	NA	NA
WP_058116986.1\|485693_485906_+	hypothetical protein	NA	NA	NA	NA
WP_147586044.1\|485945_487430_+	DUF846 domain-containing protein	H7BWD9	unidentified_phage	4.8e-41	34.8
WP_058116988.1\|487645_488290_+	LysM peptidoglycan-binding domain-containing protein	A0A2H4J2N2	uncultured_Caudovirales_phage	3.7e-22	35.3
WP_058116989.1\|488286_489237_+	hypothetical protein	H7BWD8	unidentified_phage	4.2e-83	51.1
WP_033118875.1\|489237_489480_+	DUF2577 family protein	NA	NA	NA	NA
WP_033118874.1\|489482_489908_+	DUF2634 domain-containing protein	A0A0A7RTU4	Clostridium_phage	1.2e-16	43.0
WP_147586236.1\|490045_490234_+	hypothetical protein	NA	NA	NA	NA
WP_033118873.1\|490452_490662_+	hypothetical protein	NA	NA	NA	NA
WP_147586239.1\|490753_490891_+	xylan 1,4-beta-xylosidase	NA	NA	NA	NA
WP_058116991.1\|491187_492588_+	hypothetical protein	NA	NA	NA	NA
WP_058116992.1\|492675_493755_+\|plate	baseplate J/gp47 family protein	H7BWD5	unidentified_phage	8.7e-109	53.2

DBSCAN-SWA_2

1846526 : 1905019

Bacillus_phage(50.0%)

integrase,transposase

attL 1842750:1842769|attR 1881552:1881571

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1842750:1842769	attL	NA	NA	NA	NA
WP_058117834.1\|1846526_1847720_-\|integrase	site-specific integrase	A0A0U3U8Y8	Bacillus_phage	1.1e-32	30.7
WP_058117835.1\|1847817_1848006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_058117836.1\|1847998_1848892_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_147586138.1\|1850678_1851233_+	hypothetical protein	NA	NA	NA	NA
WP_158453376.1\|1851515_1852073_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_058117838.1\|1852144_1852585_+	hypothetical protein	NA	NA	NA	NA
WP_058117839.1\|1852770_1853919_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_058117840.1\|1853950_1855168_-	CoA transferase	NA	NA	NA	NA
WP_058117841.1\|1855359_1856313_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_082636050.1\|1856347_1856554_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_058117842.1\|1856882_1857296_-	hypothetical protein	NA	NA	NA	NA
WP_058117843.1\|1857292_1858255_-	hypothetical protein	NA	NA	NA	NA
WP_058117844.1\|1858257_1859301_-	epoxyqueuosine reductase	NA	NA	NA	NA
WP_058117845.1\|1859374_1860781_-	hypothetical protein	NA	NA	NA	NA
WP_058117846.1\|1861156_1862560_+	hypothetical protein	NA	NA	NA	NA
WP_058117847.1\|1862635_1863565_+	4Fe-4S binding protein	NA	NA	NA	NA
WP_058117848.1\|1863953_1864247_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_050617135.1\|1864563_1865706_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_058117849.1\|1865784_1867149_-	hypothetical protein	NA	NA	NA	NA
WP_058118756.1\|1867426_1868896_-	4-hydroxyphenylacetate 3-hydroxylase	NA	NA	NA	NA
WP_058117850.1\|1869048_1870353_-	4-hydroxybutyrate CoA-transferase	NA	NA	NA	NA
WP_058117851.1\|1870349_1872083_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_058117852.1\|1872631_1872832_+	hypothetical protein	NA	NA	NA	NA
WP_158453377.1\|1873455_1873818_-	hypothetical protein	NA	NA	NA	NA
WP_082636053.1\|1874180_1875146_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.2e-69	46.2
WP_147586140.1\|1875414_1875765_+	hypothetical protein	NA	NA	NA	NA
WP_058117854.1\|1875785_1877432_-	thiol reductant ABC exporter subunit CydC	A0A2R8FG22	Brazilian_cedratvirus	4.0e-20	35.4
WP_058118757.1\|1877413_1879165_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	2.9e-21	30.0
WP_082636184.1\|1879154_1879568_-	YbaN family protein	NA	NA	NA	NA
WP_058117855.1\|1879862_1881110_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.9e-30	26.4
WP_058117856.1\|1881223_1881991_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-11	24.8
1881552:1881571	attR	NA	NA	NA	NA
WP_058117857.1\|1881977_1882994_-	iron ABC transporter permease	NA	NA	NA	NA
WP_058117858.1\|1882956_1883916_-	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA
WP_058117859.1\|1883917_1884862_-	hypothetical protein	NA	NA	NA	NA
WP_058117860.1\|1884892_1885714_-	hypothetical protein	NA	NA	NA	NA
WP_058117861.1\|1885810_1887358_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_058117862.1\|1887456_1892802_-	hypothetical protein	NA	NA	NA	NA
WP_058117863.1\|1892882_1893413_-	hypothetical protein	NA	NA	NA	NA
WP_058117864.1\|1893915_1894686_-	metal-dependent transcriptional regulator	NA	NA	NA	NA
WP_058117865.1\|1894919_1895222_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_058117866.1\|1895214_1895478_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_058118759.1\|1896026_1896644_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_058117867.1\|1896702_1898496_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.1e-27	26.3
WP_058117868.1\|1898512_1900264_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.7e-41	29.7
WP_058117869.1\|1900651_1901893_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_058117870.1\|1902060_1902333_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	3.4e-17	53.3
WP_058117871.1\|1902505_1902991_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_082635993.1\|1904053_1905019_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.3e-68	45.8

DBSCAN-SWA_3

2793727 : 2807764

Streptococcus_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158453391.1\|2793727_2796835_+	recombinase family protein	E4ZFJ8	Streptococcus_phage	4.4e-12	35.3
WP_058118374.1\|2796854_2797526_+	hypothetical protein	NA	NA	NA	NA
WP_058118375.1\|2797515_2798541_+	DNA (cytosine-5-)-methyltransferase	A0A0C5AFC4	Paenibacillus_phage	9.0e-47	36.7
WP_058118376.1\|2798537_2800574_+	C40 family peptidase	A0A1S5SEZ8	Streptococcus_phage	1.0e-17	41.1
WP_082635958.1\|2800600_2800993_+\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.7e-49	66.9
WP_058116759.1\|2801002_2802115_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0H3UZC2	Geobacillus_virus	3.1e-93	48.7
WP_058118377.1\|2802302_2802746_+	hypothetical protein	Q6JIG5	Burkholderia_virus	4.8e-37	57.8
WP_058118378.1\|2802755_2803496_+	hypothetical protein	G9BWC3	Planktothrix_phage	5.2e-44	42.6
WP_006058365.1\|2803482_2803740_+	DUF4315 family protein	NA	NA	NA	NA
WP_058118795.1\|2803729_2804431_+	DUF4366 domain-containing protein	NA	NA	NA	NA
WP_058118380.1\|2806090_2807764_-	recombinase family protein	D0R0F3	Streptococcus_phage	6.4e-18	23.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011307

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection