CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP013298	Arthrobacter sp. YC-RL1 plasmid unnamed 1, complete sequence	0 crisprs	PD-DExK	0	0	0
NZ_CP013297	Arthrobacter sp. YC-RL1, complete genome	3 crisprs	csa3,DEDDh,WYL,DinG,cas3	3	7	4
NZ_CP013299	Arthrobacter sp. YC-RL1 plasmid unnamed 2, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013297_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013297_1

144167-144270

Orphan

Consensus_repeat	Method
CGACTCATGTTTCACGTGAAACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013297_1

>merge|NZ_CP013297|1|144167-144270|CRISPRCasFinder
CGACTCATGTTTCACGTGAAACAGATCCACGGAAGCAGCTTCGTCGAGTGTAGGCCTCATGCACCAATAGGGTATCGTGCGCGATCATGTTTCACGTGAAACAG

>NZ_CP013297|1|1|144167-144270|CRISPRCasFinder
CGACTCATGTTTCACGTGAAACAG	ATCCACGGAAGCAGCTTCGTCGAGTGTAGGCCTCATGCACCAATAGGGTATCGTGC
GCGATCATGTTTCACGTGAAACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013297.1\|WP_152666921.1\|145301_145715_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238571
NZ_CP013297.1\|WP_052772601.1\|149059_150688_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240528
NZ_CP013297.1\|WP_047120565.1\|136477_137119_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP013297.1\|WP_047120561.1\|145848_146172_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP013297.1\|WP_082124037.1\|134006_134144_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NZ_CP013297.1\|WP_047120570.1\|132051_133488_-\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|237605
NZ_CP013297.1\|WP_047120571.1\|130457_131585_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|236089
NZ_CP013297.1\|WP_047120555.1\|153870_154956_-\|inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491
NZ_CP013297.1\|WP_047120554.1\|155251_156490_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047120557.1\|150800_151340_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239645
NZ_CP013297.1\|WP_146956006.1\|147265_148930_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906
NZ_CP013297.1\|WP_047120564.1\|138411_139560_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP013297.1\|WP_047120566.1\|135904_136432_+\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|224760
NZ_CP013297.1\|WP_047120567.1\|134936_135902_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234941
NZ_CP013297.1\|WP_146956029.1\|137396_138224_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224113
NZ_CP013297.1\|WP_082124036.1\|134209_134560_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|376392
NZ_CP013297.1\|WP_047121021.1\|156491_157508_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047120556.1\|151464_152913_+\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131739
NZ_CP013297.1\|WP_047120568.1\|134559_134937_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_CP013297.1\|WP_047120560.1\|146196_147165_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540

Protein	Function_ID	Function_description	E-value
NZ_CP013297.1\|WP_152666921.1\|145301_145715_+\|hypothetical-protein	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	0.000532865
NZ_CP013297.1\|WP_052772601.1\|149059_150688_-\|hypothetical-protein	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.44202e-74
NZ_CP013297.1\|WP_047120565.1\|136477_137119_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	2.91646e-66
NZ_CP013297.1\|WP_047120561.1\|145848_146172_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	2.10661e-43
NZ_CP013297.1\|WP_082124037.1\|134006_134144_+\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	9.26281e-09
NZ_CP013297.1\|WP_047120570.1\|132051_133488_-\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|237605	PRK14086, dnaA, chromosomal replication initiator protein DnaA.	0
NZ_CP013297.1\|WP_047120571.1\|130457_131585_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|236089	PRK07761, PRK07761, DNA polymerase III subunit beta; Validated.	0
NZ_CP013297.1\|WP_047120555.1\|153870_154956_-\|inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
NZ_CP013297.1\|WP_047120557.1\|150800_151340_-\|NUDIX-hydrolase	gnl\|CDD\|239645	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.	8.40595e-48
NZ_CP013297.1\|WP_146956006.1\|147265_148930_-\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	5.83048e-07
NZ_CP013297.1\|WP_047120564.1\|138411_139560_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.38048e-72
NZ_CP013297.1\|WP_047120566.1\|135904_136432_+\|KH-domain-containing-protein	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	7.54318e-39
NZ_CP013297.1\|WP_047120567.1\|134936_135902_+\|membrane-protein-insertase-YidC	gnl\|CDD\|234941	PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional.	6.16678e-134
NZ_CP013297.1\|WP_146956029.1\|137396_138224_+\|AAA-family-ATPase	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.73114e-79
NZ_CP013297.1\|WP_082124036.1\|134209_134560_+\|ribonuclease-P-protein-component	gnl\|CDD\|376392	pfam00825, Ribonuclease_P, Ribonuclease P.	1.15946e-20
NZ_CP013297.1\|WP_047120556.1\|151464_152913_+\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP013297.1\|WP_047120568.1\|134559_134937_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	7.08315e-35
NZ_CP013297.1\|WP_047120560.1\|146196_147165_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	2.25858e-147

>NZ_CP013297.1|WP_047120564.1|138411_139560_+|ParB/RepB/Spo0J-family-partition-protein
MAEKKRGLGRGLGALISSSPAATAPEEKTDVSRETTSPETTPPPSKAKPARPVDMFFEPGRKSSSPASTSTPSRSGKKARATMPGLTSTVASTKPKPAEPIVEVETDGLVDVPGAQFAELDVKLIHPNRKQPRTNFDQEHMDELIHSIREIGLLQPIVVRPSREKNDAPYELVMGERRWRATQEAGLSTIPAIIRDTQDTDLLRDALLENLHRSQLNPLEEAAAYAQLLEEFNCTQEVLSDRIGRSRSQISNTIRLMKLPALVQRRVAAGVLSAGHARALLGLSNNEAIEQLAQRIINEGLSVRATEEAVALSDDKPKPKGRKVREAQRNERLDFIATSLADRLDTNVKIQLGSRKGKVSIEFASVEDLNRIMEVLDPNMKS
>NZ_CP013297.1|WP_146956029.1|137396_138224_+|AAA-family-ATPase
MEARKVPKPDKTRYFTISNQKGGVGKTTTTVNLAAALAKGGLNVLVIDIDPQGNASTALGIEHHAEVDSIYDVLINDVPLADVVATCPDLPSLQVAPATIHLAGAEIELVSLVAREQRLQRALDDYARTRQRLGQPRLDYVFIDCPPSLGLLTVNAFVAAREVLIPIQCEYYALEGLSQLLKNIEMIQKHLNSRLTVSTILLTMYDGRTNLAAQVANEVREHFPEQVLQAVIPRSVRISEAPSYQQTVITYDPNSTGALSYSEAAQEIADRGVKA
>NZ_CP013297.1|WP_047120565.1|136477_137119_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTEDLSLNPEETLAAEKIFGDRLDLAKRYVEHLATSGIERGLLGPREVPRLWSRHVLNCAVIESVMEKDAEVADVGSGAGLPGLCLAIARPDLNLTLIEPLERRCIWLSEVIDDLGLTNVTVMRGRAEQMVDVVNARYVTARAVSALTNLAGLTIPLLHGEGELIAIKGRSAAEEIDKASKAIRKLGGKETEVMVIGEGLLAEPTTVVRIKVG
>NZ_CP013297.1|WP_047120566.1|135904_136432_+|KH-domain-containing-protein
MTAAENIEVNDLENQVDSEQEVLDEGDVAADYLEELLDIADLDGDIDIEIRGGRTYISIVTEEEGADLSSLVGKDGEVLDALQELTRLAVLNATGERSRLVLDIAGYRSDRAEQLHAIADEAIHKARETGEDVHLQPMSAYERKLVHDVIADAGLHSESEGESGRRHIVVSMLDN
>NZ_CP013297.1|WP_047120567.1|134936_135902_+|membrane-protein-insertase-YidC
MNNFLDTILTPFTYAVSWVLWAFHELFTLIGMNPDSGVTWTLSIIFLVLLIRTLLIPVFVKQIKSQRAMQALQPDLKKLQAKYKGKTDQMSRQAMVQEQQALFKKHKTNPLSSCLPLLIQMPFFFALFRVLNNASHASESGQSVGALSVENIRSFDAATIFGAPLSETFLGTFNSGNTNWAVVIVAVIMILAMIASQFFTQRQLMTKNMSAEALQGPFMQQQKMMLYILPLVFGIGGINFPIGVLIYWTATNLWTLGQQYWVIHNNPTPGSEAERELNARRAAKGLPPVGQKKNAEAEQPVIEQPKGQREQPQRKNRRKKK
>NZ_CP013297.1|WP_047120568.1|134559_134937_+|membrane-protein-insertion-efficiency-factor-YidD
MRKDSAPRTGVLWFVIDIPRNILIGLLKIYRKIISPLYGDVCRYFPSCSAYGLEAVTQHGVVKGVGLTAWRILRCNPWSHGGVDHVPEGPRIWPEGKLPRIIVLNHPVIPDDEDAADSGRKERDL
>NZ_CP013297.1|WP_082124036.1|134209_134560_+|ribonuclease-P-protein-component
MLPKNQRLRLAQDLTATVRSGVRSGRRNVVLYARPRIDEESGDRFGFIVSKAVGIAVKRNLAKRRMREIAHELRRADGNLDIVVRALPGAAEISWDELHSQVSSAFASAVRKTEAR
>NZ_CP013297.1|WP_082124037.1|134006_134144_+|50S-ribosomal-protein-L34
MSKRTFQPNNRRRAKKHGFRLRMRTRAGRAILSARRSKGRSELSA
>NZ_CP013297.1|WP_047120570.1|132051_133488_-|chromosomal-replication-initiator-protein-DnaA
MSSDETNSIGSSWRQVIRKIEDDDRVKARHRAFVSLAKPQGLIGTTLLVAVPNDLTRDMLQTQLREPLDDALRAVFQDDIRCAVSVDLSLSDELEAEEPEVQTAPATPPAVTEAPGPRPQPAPQPTPPSNSQEFGRLNPKYIFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYARHLYKGIRVRYVNSEEFTNDFINSIRDDEGASFKQTYRNVDILLIDDIQFLANKDATQEEFFHTFNALHNHNKQVVITSDLPPKQLQGFEDRMRSRFEWGLLTDIQPPELETRIAILRKKADAENLSAPSDVMEYIASRISTNIRELEGALIRVTAFASLNNQPVDLALAETVLKDLISDDGAQEITPSTIIKQTAEYFGLSIEELNSKSRTRTLVTARQIAMYLLRELTEMSLPKIGAELGGRDHTTVIHADRKIRELMAERRAIFNQVTELTNRIKQSQREH
>NZ_CP013297.1|WP_047120571.1|130457_131585_-|DNA-polymerase-III-subunit-beta
MKFSVEKDVLADAVSWTARSLAQRPPSPVLAGILITTHEGIVRLEGFDYEISSHIEIPADISEQGSILVSGKLLAEITRSLPNSTVTLETEGSKISLTCGRSRFHLATMPVDEYPTLPALPEIAGTIDGQAFAEAVSQVIVAASKDDTLPVLTGIKVEIENDLITFLATDRYRLAMRELNWTPNQSEISTSFLIKAKTLSEVAKTLSSSGELKLAISQNGEMIGFESTNRRTTSLLINGEYPKIRSLFPSDTPIHATVRTSELIEAVRRVSVVAERNTPVRMAFTDGQLTLDAGTGEDAQAEEAIVAALRGEDIVVAFNPTFLSEGLNSFNTDFVRFSFTSAPKPAMLTGQEKLDEEDQDQYRYLVMPVRLPNSN
>NZ_CP013297.1|WP_152666921.1|145301_145715_+|hypothetical-protein
MKSLAGVRAGLGASDHCRREWRQEGIDTDRSRRWTGHRLNVMGIDSSRPPVLSDPAQSASCRFATRTLRFSWIRLPEYRSRRPERPAQLADEVLAAFGESLPQPLTVMNSWQDTNASSTNILVSLNQKQSHEYVYLE
>NZ_CP013297.1|WP_047120561.1|145848_146172_-|thioredoxin
MSNAKAVTEATFQAEVLESDKPVIVDFWAEWCGPCRQLGPILDQIAEEHAEKVTVVKLNIDENQALSAKYGITSIPAMFVFQNGEHVASSLGAKPKAVIEKEFAAYL
>NZ_CP013297.1|WP_047120560.1|146196_147165_-|thioredoxin-disulfide-reductase
MTSVQNDEIRDVIIVGSGPAGYTAAIYTARANLNPLVIAGSVTAGGELMNTTDVENFPGFPQGIMGPDLMDNMQQQAERFGAEILFDDVTEMNLEGEIKTLSLADGTVYRARAIIVSTGSAYRELGLADEKRLSGHGVSWCATCDGFFFREQTIAVIGGGDSAMEEALFLTKFASKVIVVHRRSELRASKIMADRALAHEKIEFVWDSEVVGINGEDKVNGLVVKNRNTGEESTLDVTGVFVAIGNDPRVDLVKNQLELTAEGTIAVDGRSSKTSLPGVFAAGDVIDSTYRQAITAAGSGCAAAQDVEHFLANVKTPAEAAN
>NZ_CP013297.1|WP_146956006.1|147265_148930_-|hypothetical-protein
MSQPIDVGSVLSGRYQVTETVLSSAEGDLVLSGIDQVLNRAVSIMVASVHNSSQLATSAREIAMGERTANVQVLDLGITDSNQTYLVANVARSSDMLDLVLETDDAPYVEPFFTDTLGTEIFGESRQSVPQTYEDDAEYYENLRYEDAPEQQGKVGTALSNGFAGFKNRFGKKNQQPAEDVYDDSDYQQDDYQQAEAPAEADDQTAPNAQVPPTAATPMAPAQPGASKPKVTRLDDKDEPNVTATAALAAAAQSKGQASKTKPEESRPQQQKQQPKAQQPKPAAASNDAKKKAAAAAAGVAAGAAASKASTFPAAAKNAPVQNQDVEQVDDEESTSRGTRLLVGAVLVIVLVIGVVFAFNFLGGDKDNVAENNGATTTSEAPTTPGESKTPEESEAPSLPAPAIADVSRLVPGNQELNSATDDTLSKMTDGNASSSYKSFSYTTGNFGGFASNMVFILELEEKSAVSEISLDGLNATGGAYEILVGSSDDLGSATSVAKGSFSGPSVTVPVKDGDKDFMEGQYIFLNVTDLPRRASGANPDRPYGLQIGEFSAK
>NZ_CP013297.1|WP_052772601.1|149059_150688_-|hypothetical-protein
MASGTLVSRILGFVRTALLAMAIGSVTSVADIFEKANVIPTIIFMLLAGGIFNVVLIPQLIKASKAADRGAAYTSKLITLTMVVMGAMAVILTLCARPLIVALTHNWTEPMIVLGTAFAYWSLPQVFFYGLYAVLGQVLNANGRFAAFMWAPAVNNIIQLLVIGAFIITFGAYSSGDPMDTWTTGKTIWLAGGATLGIVMQSVVLLWPLKKTGLKLKLDFSWRGMGLRHVGKLAIWTLAAMVIGNVSSLLYSKIVSAATAARTELPPEQAASVAGEYALNTSQLITVLPHSLFALTVATVLFNDFTRAFHENRRKDVGGLLSQGMRSTAIPIVFCTLVFIVLAGPLGRLFAGNSEYAAQAAGALGQLLVLTALGLPFKSLQFFMLRVFFADEDTRTPMLIQTATAALGLVLAFTAAAVVDPLHIASAIAFIYGLTNVLGAIGTHYLVKCRYGDYGITGVIDTYVRIGWMATVSALVGCLVLWLMGGFNFGFAYDSLITAIITVVVVGGVMAVVFIGLLYKTKVPELDGFLGPLLRRIPGLKR
>NZ_CP013297.1|WP_047120557.1|150800_151340_-|NUDIX-hydrolase
MNRPIPSAPKRTPLTASMARAQATGGHTSLPTVEEVSSGGIVIDFEKPDFPVAIIARYNRGGRLEWCLPKGHPEGEETNEEAAIREIEEETGIAGQILAPLGSVDYWFTVTNYRVHKTVHHFLLEATGGHLTIENDPDHEAVDVAWVPLDALGKRLSFPNERRIAELAREVLTKYVSGS
>NZ_CP013297.1|WP_047120556.1|151464_152913_+|CCA-tRNA-nucleotidyltransferase
MHALPTHDALRQILPSVIFELADRFVRAGHELSLVGGPVRDLYLGRVSPDLDFTTSARPEETLKIVSGWADNTWDVGREFGTIAFKKGEHTLEVTTYRADAYDKDSRKPVVAFGDNLHDDLFRRDFTMNAMALRLPELELVDPFDGVSSLTDQQIRTPGSPDISFSDDPLRMMRAARFASQLKIEVSPEVRQAMSEMTDRIEIISAERVRDELVKLINGADPRAGIDLLVDTGLADRVLPEVSALRLEIDEHHRHKDVYQHSLTVLEQAVELETDAEGAVPGPDFILRFAALMHDVGKPATRKFEPSGAVSFRHHDMVGSKLVKARMRALRFDKDTTKAVARLVELHMRFYGYGDAGWTDSAVRRYVTDAGSLLERLHRLTRSDVTTRNRRKAERLAFAYDDLEARIAAIAEQEELDSIRPDLGGEQIMAILGIRPGPVVGRAYKFMLNLRLDEGVLGEEIASERLRQWWAQQPESQPSVTE
>NZ_CP013297.1|WP_047120555.1|153870_154956_-|inositol-3-phosphate-synthase
MSANPIRVAIVGVGNCATSLIQGVEYYRNADADSTVPGLMHVQFGQYHVGDVQFVSAFDVDAKKVGLDLSEAILASENNTIKIADVPTTGVTVKRGHTLDGLGKYYRQTIEESASEPVDVVQTLKDDKVDVLVCYLPVGSEQAAKFYAQCAIDAGVAFVNALPVFIAGTPEWAQKFTDAGVPIVGDDIKSQIGATITHRVMAKLFEDRGVVLDRTYQLNVGGNMDFKNMLERDRLESKKISKTQAVTSNTSAELGEDDVHIGPSDYVAWLDDRKWAFVRLEGRNFGDAPVNLEYKLEVWDSPNSAGVIIDAVRAAKIALDRGIGGPILSASSYFMKSPPEQYDDESARQKVEAFIRGDVER
>NZ_CP013297.1|WP_047120554.1|155251_156490_-|hypothetical-protein
MFVNPSILAIADSDSYLKLAVTFLDRLGPAWDRRVALVRTPVMPTEEQIAAAFAGTSLDQRDLQFMTLHQLNADSIPEDIVFAAATGPVVAEAYSRILRSEPAQARRTALVSALPGVAYPATAKGWNYRRAGDAFICHSHAEARDFSFMTEEQPGHHPTIMVSKLPFLHSAGFPPVTHGEIRRVVFAPQAKVPYTREDREKILLALERAARLNPGLEVVVKLRARAGEPQTHLEAFPYDQLCDELQAAGRLGPHSHLRFETGTMSNALTPCSALVTVSSTAALESLDRGLPTMILSDFGVNEQMINEVFRGSNILGTMDELESLNFPVPAKAWLRENYFHRMDGSFHESMAILAYQARQGRLVTDAEILALVRNQPMRQRLRTALPTPVVRILQKIRRFLNNDGRQDLKSSS
>NZ_CP013297.1|WP_047121021.1|156491_157508_-|hypothetical-protein
MSINLSRHDTSEVPRPRFGAASVWVESPLQLLSAVETHAAGLLGHEVRIVPRQGMPLEATTQALLAQAPTGVEFVQAARKPPAPKSSTDRFVAGDAYSGKVQRALLAGVKAKEVVIIDDGLATLALINQLVAEEPAPLVRARARNSAARTAMGLAMWHRLRQLAREGRLLIVSALLVSPDTQRRMAELGIKFAQHKFEWLSTQPVAERFTEPTLLIGSAMAADGLIHEEPYLQWIKSIAADGPVAYFPHRRETAEFLEKISQIRNVVPKQHTVPIEMRLRVLRPGQEIRALPSTVIPSLRLLLGNDARQLYPQAVPESWWTESTPVPLREHLSSSLKV

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Crispr_ID: NZ_CP013297_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013297_2

925810-926456

Orphan

Consensus_repeat	Method
GCTGANGCGNAGGCTGNTGC	CRT

12 spacers

The CRISPR arrays of NZ_CP013297_2

>merge|NZ_CP013297|2|925810-926456|CRT
GCTGATGCGGAGGTCGGTGCAGATACCGCTGGTGCCGACACCAACTCTGATGCTGATGCCAACGCTGACGCCCAGGCTGATGCCAACGCTGATGCTGAGGCTGGTGCGGATTCGGCTGGTGCTGATGCGCAGGCTGATGCGAACGCTGATGCTGAGGCTGGTGCGGATTCGGCTGGTGCTGATGCGCAGGCTGATGCGAACGCTGATGCTGAGGCTGGTGCGGATTCGGCTGGTGCTGATACCAACGCTGATGCGCAGGCTGATGCAAATGTAGACGCTGAAGCTGGTGCTGATGCGCAGGCTGATGCTGAGGCTGGTGCGGATACCGCTGGTGCTGATACCAACGCTGATGCGCAGGCTGATGCAAATGTAGACGCTGAAGCTGGTGCTGATGCGCAGGCTGATGCTGAGGCTGGTGCGGATACCGCTGGTGCTGACACGAACGCTGACGTGCAGGCTGATGCAAATGTAGACGCTGAAGCTGATGCTGAGGCTGGTGCTGACACGAACGCTGATGCTGCTTCGTCTGCTGATGCCAACGCTGACGCGCAGGCTGATGCAAATGTAGACGCTGAAGCTGGTGCCGATGCGCAGGCTGATGCTGAGGCCGGTGCGGATACCGCTGGTGCTGACACGAACGCTGATGC

>NZ_CP013297|2|1|925810-926456|CRT
GCTGATGCGGAGGTCGGTGC	AGATACCGCTGGTGCCGACACCAACTCTGATGCTGATGCCAACGCTGACGCCCAGGCTGATGCCAAC
GCTGATGCTGAGGCTGGTGC	GGATTCGGCTGGTGCTGATGCGCAGGCTGATGCGAAC
GCTGATGCTGAGGCTGGTGC	GGATTCGGCTGGTGCTGATGCGCAGGCTGATGCGAAC
GCTGATGCTGAGGCTGGTGC	GGATTCGGCTGGTGCTGATACCAAC
GCTGATGCGCAGGCTGATGC	AAATGTAGACGCTGAAGCTGGT
GCTGATGCGCAGGCTGATGC	TGAGGCTGGTGCGGATACCGCTGGTGCTGATACCAAC
GCTGATGCGCAGGCTGATGC	AAATGTAGACGCTGAAGCTGGT
GCTGATGCGCAGGCTGATGC	TGAGGCTGGTGCGGATACCGCTGGTGCTGACACGAAC
GCTGACGTGCAGGCTGATGC	AAATGTAGACGCTGAAGCTGATGCTGAGGCTGGT
GCTGACACGAACGCTGATGC	TGCTTCGTCTGCTGATGCCAAC
GCTGACGCGCAGGCTGATGC	AAATGTAGACGCTGAAGCTGGT
GCCGATGCGCAGGCTGATGC	TGAGGCCGGTGCGGATACCGCTGGT
GCTGACACGAACGCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013297.1\|WP_047119978.1\|929525_930908_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143418
NZ_CP013297.1\|WP_113608156.1\|938635_939070_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_082636913.1\|922083_922842_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|310737
NZ_CP013297.1\|WP_047119986.1\|918524_918881_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_052772588.1\|933032_933818_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|274729
NZ_CP013297.1\|WP_047119987.1\|918089_918485_-\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP013297.1\|WP_060616995.1\|933814_936388_+\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|273901
NZ_CP013297.1\|WP_047119990.1\|913501_914758_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340897
NZ_CP013297.1\|WP_152666883.1\|922845_923541_-\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP013297.1\|WP_047119979.1\|927510_928299_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_082123969.1\|928301_929444_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214802
NZ_CP013297.1\|WP_047119985.1\|918956_921389_+\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NZ_CP013297.1\|WP_047119989.1\|914777_915434_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP013297.1\|WP_047119973.1\|936447_937680_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173840
NZ_CP013297.1\|WP_047119988.1\|916115_918071_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP013297.1\|WP_047119972.1\|937792_938482_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|188483
NZ_CP013297.1\|WP_052772479.1\|915501_916041_-\|DUF1697-domain-containing-protein	unknown	unknown	gnl\|CDD\|377954
NZ_CP013297.1\|WP_047119984.1\|921533_922025_+\|ferritin	unknown	unknown	gnl\|CDD\|153113
NZ_CP013297.1\|WP_047119971.1\|939171_939411_+\|YtxH-domain-containing-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047119977.1\|931179_932241_-\|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl\|CDD\|381376

Protein	Function_ID	Function_description	E-value
NZ_CP013297.1\|WP_047119978.1\|929525_930908_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NZ_CP013297.1\|WP_082636913.1\|922083_922842_+\|SH3-domain-containing-protein	gnl\|CDD\|310737	pfam06347, SH3_4, Bacterial SH3 domain. This family consists of several hypothetical bacterial proteins of unknown function. These are composed of SH3-like domains.	8.67374e-05
NZ_CP013297.1\|WP_052772588.1\|933032_933818_+\|alpha/beta-hydrolase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	1.90947e-28
NZ_CP013297.1\|WP_047119987.1\|918089_918485_-\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	1.17666e-23
NZ_CP013297.1\|WP_060616995.1\|933814_936388_+\|ATP-dependent-helicase-HrpB	gnl\|CDD\|273901	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. [Unknown function, Enzymes of unknown specificity].	4.81714e-175
NZ_CP013297.1\|WP_047119990.1\|913501_914758_+\|MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.88704e-86
NZ_CP013297.1\|WP_152666883.1\|922845_923541_-\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.13074e-40
NZ_CP013297.1\|WP_047119989.1\|914777_915434_-\|membrane-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	6.88737e-45
NZ_CP013297.1\|WP_082123969.1\|928301_929444_+\|hypothetical-protein	gnl\|CDD\|214802	smart00752, HTTM, Horizontally Transferred TransMembrane Domain. Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.	3.67144e-33
NZ_CP013297.1\|WP_047119985.1\|918956_921389_+\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_CP013297.1\|WP_047119973.1\|936447_937680_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	5.91103e-131
NZ_CP013297.1\|WP_047119988.1\|916115_918071_+\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	4.53426e-62
NZ_CP013297.1\|WP_047119972.1\|937792_938482_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|188483	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator. Members of this family are TetR family putative transcriptional regulators that occur in genome contexts near proteins of the mycofactocin system. These include the precursor peptide (TIGR03969), a radical SAM peptide maturase (TIGR03962), and a putative carrier protein (TIGR03967). [Regulatory functions, DNA interactions].	6.08343e-15
NZ_CP013297.1\|WP_052772479.1\|915501_916041_-\|DUF1697-domain-containing-protein	gnl\|CDD\|377954	pfam08002, DUF1697, Protein of unknown function (DUF1697). This family contains many hypothetical bacterial proteins.	1.95444e-31
NZ_CP013297.1\|WP_047119984.1\|921533_922025_+\|ferritin	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	1.49567e-63
NZ_CP013297.1\|WP_047119977.1\|931179_932241_-\|L-glyceraldehyde-3-phosphate-reductase	gnl\|CDD\|381376	cd19150, AKR_AKR14A1, Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ/AKR14A1) and similar proteins. Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ), also called GAP reductase, is a founding member of aldo-keto reductase family 14 member A1 (AKR14A1). It catalyzes the stereospecific, NADPH-dependent reduction of L-glyceraldehyde 3-phosphate (L-GAP). It is also involved in the stress response as a methylglyoxal reductase which converts the toxic metabolite methylglyoxal to acetol in vitro and in vivo.	7.04311e-176

>NZ_CP013297.1|WP_152666883.1|922845_923541_-|response-regulator
MTEAKPRMPPMPEIRVHLADSDHFSRAGIVGALTAERDIDVEHVAGSIAEALESASLKKPDIILLETSLSGNSLFKSVRQLISAAPNSKVVVLATRYSREEVTQAYDAGSSGIISKSSISTELPSALRMVAAGYQLFAPPTDGWEYPVRMEKRTENQTIIQALSGRDRQLVSLVAAGLTNVQISRAVHISEGSVKLYLARIMDELSVTNRVQLAVIAAETGLITSADLQIA
>NZ_CP013297.1|WP_082636913.1|922083_922842_+|SH3-domain-containing-protein
MLLPLSFLFEVLVNQMGYSQSTARSSSASRTHRTTAPLKLRKGAGRHYLVQSNLDQGTELTLVKVHGSWAHVYVHKIYGWVPNIYLEPIPAEFDEPVATQSDDDHDERTLSRYSLVETTHSTTATLNLRKGSGTGYPVLMVIDQGVKVRLLLQQGLWSQIQCGKLHGWVPSMYLHELPARPAKGGLMAVPNQRALTTIGLNARRGPGDHYGLARILQADTAVVIVARQGAWRQIDRDGEQMWIPASQLRTVY
>NZ_CP013297.1|WP_047119984.1|921533_922025_+|ferritin
MELTGKLAEAFNTQVTLELTAATVYRQLAVEMDIMSLPGIAGWFRAQAAEEIVHAEKFMDHMTDRSAHPRIGEQSAPVVNVKSVADAFAASLAHEQKVSEAIRELYRLAQTEGDIDSLPLLHWFIDEQVEEEATVSEILDRVNLIGNDGNGLLRLDSELGARK
>NZ_CP013297.1|WP_047119985.1|918956_921389_+|RNA-binding-transcriptional-accessory-protein
MGHNGSVSSDQKNNAVSNATEQRIIEVLARELSVESMVQPWQVKAAIELLDSGSTVPFIARYRKEVTGMLSDSQLRLLEERLRYLRELEDRRVVVREAISEAGKLTDQLDAAITAASTKSELEDIYLPFKSKRRTKAQIAREAGLEPLADLLLANPQTDPAAAAADYLNADAGFPTDLDVLSGARSIVTERVSQDVVLAADLRERLWTNGKIGASIAAGATAEGQGKYSDYLDYVADLDNLPSHRVLALLRGERDGVLNLQLAEADPRDAEAVDQARAGYENAIAASLGINAPADAPAGKWLAQTVRLAWKARLLTRFESDLRSRLFEEAEDASVKIFAANLRDVLLAAPAGNKAVLGLDPGLRTGVKVAVVDLTGKSIETATIYPHAPANKWNESVAILTRLAQKHGTTLIAVGNGTAGRETDRLAAEVIKALGTAEVSKVIVSEAGASVYSASELASQELPGMDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVTASKLDRALDAVVEDCVNAVGVDVNTASPSLLARVAGVGPLLSRNIVEHRNANGPFATRKDLLKVPRLGAKAFEQCAGFLRITGGKEPLDASSVHPEAYDLARALQKAAAQQGRRLEELKPADFVTEQFGEPTIRDVVAELQRPARDPRGEFVTATLKEGVESIGDVKPGMIMEGTVSNVAAFGAFVDLGVHQDGLIHVSAMSTKFISDPREVVSSGQIVKVKVLEVDTARKRISLTLRLDDELPAAGESGKPNGQRERSPRGYGQNSRSGQQRSSNRGRPNGGNRAEAPSGNTAMAEALRRAGLGK
>NZ_CP013297.1|WP_047119986.1|918524_918881_-|hypothetical-protein
MGKVKVRNTAILLLVSSATLFSAGCSVIQDTANSAANELTDAASKEIVRQACAPIQDGRIDASELRVLTSLVGAVEGGGLPQDLVDVLNDLADSGDSVSSRLQERLVQACDDATAQAN
>NZ_CP013297.1|WP_047119987.1|918089_918485_-|RNA-binding-S4-domain-containing-protein
MLEIPTTGKIRIDAWLWAVRAYKTRSEATAACRAGHVRLNGVSAKAAQPVVPGDRVRVRKNGFDRELEVVGLISKRMSASVAVKCYIDHSEPREKIIIPQVPVRERGAGRPTKKDRREMDRLRASWIDPED
>NZ_CP013297.1|WP_047119988.1|916115_918071_+|S9-family-peptidase
MPSKLPYGSWPSTISANDVAAGTKPLGGACFHGQNVIVQEGRPAEGGRITLVSYPLDQPGEPIELISKPYNVRSRVHEYGGASWKLVTGRLQDAIVFTNFADQRVYLQQLGQVTPIALTPDSMSGGNPQLRFAEFIDGPNRSVLAIMEDLRSEPVRHIVQIPLDGSAAQDATRIRVLTAPARFVAAPRLSPSGKMLTWISWEHPNMPWDGTQLHLAEVAGNGQLEDTVIAGAQDISIMQPEWVDEDRIAYVSDESGWWNPYIHQVSSARATRLVDRAAEFAGPLWQVGSAWYVLEDQRTLLCSYGTGTTKLARVHALTGGLEDLPLPFTRVRPLQVRDGWLLAGTSSMTQGEQITLVNLDTLEHRAVAGSIARLPDPAMLPQVEEFECTNVAGQSVHALLYRPRQDGLTGLDDELPPYVTFVHGGPTAQAAATLNATIAYYTSRGIGVVDVNYGGSTGYGRDYRNRLRGQWGVVDVADTVSVIKALVARGIADPARVGIEGGSAGGWTVLSALTNSEVFRAGISRYGVSDLVALVQDTHDFESQYMFSLVGPYPEAADLYEKRAPINHVSKISCPVLLLQGDEDLVVPPSQSQVVADALAARGIPHAYILFAGEQHGFRQSENIVSALESSLAFYAQIFGFETDAPAIELS
>NZ_CP013297.1|WP_052772479.1|915501_916041_-|DUF1697-domain-containing-protein
MTTFAVFLRGVNVGGVKVLMKDLASLLTDGGFTEVRTLLASGNVVLESELSEAQAVQRRCNELLEEYYGRSIPTLVYTREEILQLARPFVLELPEPAAEHHGYLTLCESAADAAELCELARGLDPQPAVDVLGRALCWIVRRGQSTTDPLAKLTTAQARKRVITTRNHNTLVKLAAIIR
>NZ_CP013297.1|WP_047119989.1|914777_915434_-|membrane-protein
MLTLIELVGIFFFAVSGSLMAARRGFDMLGSAFLGGVTGLGGGVVRDLILNQSPATFAHPVYFLPPVLAALCVYAFTPAVQKLHRLVQIFDAAGLGLFCMTGTMKALENDVNPVTAVLLGVITGVGGGMLRDVISNVTPDLFNPRDVYALPAILGATATAFVWHFDVLNIAVGTGIAGLTFVLRLASIRFGWSVPLAAGHWHRQPNIPNHGDGPRRNF
>NZ_CP013297.1|WP_047119990.1|913501_914758_+|MFS-transporter
MSNASPKTSLKGRIGALLGILLMALSLRAAVVSVPPLLARIQVDIEFTEFTIGLLATLAPIVFACFGLLTPRLIRSFGLEKTLITAIALAVVGQVARVFMPEVYSFLALSIIALAGYGMGNVVLPPLVKKYFPDRIGLVTSGYVTMLAVGTWMAPQFSVPLANASDWKISIGSWALLSMIVLVPWIIQLVADRNVDRPDQPVQAVGAAQPIAKINPWKSKVAWGLAIFLAGNSAQTYVYFTWLPPYLQDRGLSELSAGNMLALFAILGLPVSLLVPLWVPRLKNPIIAVLIFTACWVSGHLGIYLSPTEGTVLWVCLAGLGQGTFAIALLMMNLRSRTTYGSGVLSGFAQGLGYAGAGIVPLLFGVVQKSTGSWGPAFAMLGACVLVMLIGAIIINPSRTIEDSVEGSEKAGRLERIG
>NZ_CP013297.1|WP_047119979.1|927510_928299_+|hypothetical-protein
MTETDSKPKIKKRPMWLRLVAVACVGLTAWHVFATFLWVSPSSELRNAVPGNALRAYMQPMFGQSWSVFAPKPIDGDYSFEVRATLEDADGKGEATQWVDAVNLEMDMIHHNPFPPRASLAGNQLASDYRNRWQKLNDEQKDVVELGYFKGDDWSNRLDEELVERAAQSASSQKNTKSFIESERVASAYATQVAKSLWGQDVSSVQFRAGRQGVIPFEQRNDPDAQRPDAVTIDSGWRGLTVIEDQNEQNFAEVFNSLEGVQ
>NZ_CP013297.1|WP_082123969.1|928301_929444_+|hypothetical-protein
MAGKSNLVAPLARVWSAFWKEGPAHLAQAAKGVIATIDGWLLDSKHAMYGIAVARMIFAAAALGLLLTNFSTRHYTYGSGAAWSGQLEEANGSFAGNPLFELFFSIAHNDAAVTVYFLMLMVLASALLVGYRARLVLPVFLVLWIGLIETPYFGGDQGDNALRIALFLMLFTDHSARWSFDARRRGRNANSTGTIPAKLWRGTRILPAGLTNLWHNLALVALACQVFMIYVSGALFKAGGEPWQNGTAIYGPLHTMRFGPWPELSELITTFGWVVALGSIGSVMLQVCFPGALLFRWTRIPVLFAMISFHAGIAILMGLPWFSLAMVGIDAIFIRDVTWERMANWVKRSAHAVEEAPPMPVLDELVDTGDRETERITVGV
>NZ_CP013297.1|WP_047119978.1|929525_930908_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MSAPTYKVLNPATGEVVEEFDVATDEQIEQALASAQSAYESWQDVDINERAKIVSKVGALFAERAEELGKIMTTEMGKPLSEAVGEAQFCQEIFEYFASEGPTLAADQEIKSFSGGKAIVQKLPVGPLLGIMPWNFPLYQVARFAAPNLMLGNTILLKHAESCPRSALAIQKIMDEAGVPAGVYNNVFATHDQISTIIADSRIQGVSLTGSERAGAIIGEQAGRNLKKAVLELGGSDPFVVLDSDDVSGIAEAAWGFRIDNTGQACNSNKRMIVMDDIYDEFVSELTKRAEGLKPGDPMKEEDGSFAPMSSRKAAEDLHAQVQDAVSKGATLHAGGVLHDGPSAYYSPAVLTGVTKEMRAYYEELFGPVAVVYKVTSDEEAAELANDTIYGLGGSVHSTDEARAAKVAQKLQVGMSNVNAASAEGAEMPFGGVKRSGFGRELGPLGMEEFVNKRLFYVGE
>NZ_CP013297.1|WP_047119977.1|931179_932241_-|L-glyceraldehyde-3-phosphate-reductase
MEYEIVNPVNDTHRPYVAAADRYEHFGYRRVGDSGLMLPPLSLGLWWNFGDNRTFDSQREILRHAFDHGITHFDLANNYGPPAGAAEENFGRMLRKDFKPYRNELVISSKAGWDMWAGPFGTLGSRKYLIASCDASLEKLGLDYVDIFYSHRFDPKTPLEETIGALDTLVRSGKALYVGISSYSAERTAQAKAIAKDLGTPLVIHQPSYNILNPWVEHGLLQTLAEENMGAIAFTPLAQGLLTDKYLTTTDVERQGGRRALTEQLTDENLTKIRRLNDVSQRRGQSLAQMAIAWLLRDGAATSVLIGASSTKQLDENLGALKNVDFTQAELDEIAQIAQGDAGIDWWRSSAIG
>NZ_CP013297.1|WP_052772588.1|933032_933818_+|alpha/beta-hydrolase
MIKNPADGAEIFFDDDAADGEPILYLHGSALSRSIWRGLGYTKTLGAGHRNIRMDLRGHGRSSKSHDVADYTMEKVMGDIHALLDHLGLESVHVVGYSFGARTGLHLAMTSPASVLSLIMLGGTFEITPGEIGKLFFPGYLQVLRDGDIEGFVTGQETRGRLDPATRMAFKSNDPLALAAYYEAAETVQNVELAELAQIRVPTLLLIGTRDQPRFDQNKIMAHTLPNARMVALPGRTHGSTLFPIEPVVQAIESFWNGRRR
>NZ_CP013297.1|WP_060616995.1|933814_936388_+|ATP-dependent-helicase-HrpB
MSSALFDLDAVSRGLAFGPSRHELFNSVKADPAQPLVIQAPPGSGKTTIVPPTAANALAGRGLDGRVVVTQPRRVAARAAARRLAQLDGSKLGDRVGFSVRGERMLSDRTKIEFATAGLMLRRLLADPDLDGVSALIIDEVHERSIDTDLLLAMANQVSELRDDLSLVVMSATLHAQELSQLLARDAPAPVLSAQSAQFPVQELFDSFSGQRNTERGLSHDYLRHVARSALKHSELANRAAGQPVDTLVFLPGAGEVQRVCSYLEASGARSFALHSQISSREQDSILGVPDVAEPARIIVSTSIAESSVTVPRVHLVVDAGYSREPRRDEGRGFSGLVTVVSSRAAATQRAGRAGRLGPGTVVRTLDAKSFAAAPAHSTPEIRTADLVDAGLTLAAWGAPRGEGLSMWEQPPAATMRADQQVLHALDAVDESGRITALGERMSKIPTDPRTARALLEGTARFGAKAAAEVVAMLAGSERVASADLGELLAALRRTSHPGHRSWAREAKRLAALAPAGKDGNAARPQAAADAVAGICALAYPQWIARRMGPAEYLLASGTRASLPRGSHLEHFEYLAVAEVSRTGGGAMIRKAAGIDFDTACELLPQMHRIRDTAQLLDGRISARRIESFGEIELSSKPIKVTGELGLQAAQAALAEQGLAVFGTQEGFEALRRRMAVAHRLLGEPFAPMDEASLIARAEDWLTPALRQLAAGKSAAKIELHSALRTLLPWEHAHDFDELVPQRLQVPSGSRITVAYPPVGDAGPAVVSVKLQECFGMEKSPKLVRQKLPVQFHLLSPAGRPLAVTDDLVSFFNGPYAQVRSEMRGRYPRHPWPENPWEHVATASTKNRLKREAGGNA
>NZ_CP013297.1|WP_047119973.1|936447_937680_-|acyl-CoA-dehydrogenase
MTQQQTGFAFPSGVTEPQYDLWSDGVNIDPTGIFSELSEADAAWRAKARKFVLDEVKDDIHEYWDKADYPLHLVKKLGDADLLRDGLAIEGRQEMSPLAAGLINMEMARGDGSVATIIGVQGGLALRSVIYCGSPEQIAKYGMPMLAGELPGAFALTEPTHGSDSVSLETAARKVEGGYALSGEKKWIGNGSIGGVSIVWARDEEGKVRGFIVHQEAEGYQAANIENKLSLRAIWQAHIRMDEVFVPDEDVLPEAKSFKDTSRVLFATRLGVAWAAVGHATACYESAVNYAKQRIQFGRPLAASQIVQERLARMQSELATIQLLVMQATKREASGELTGPQASLAKYTATRTTRSIASNARDLLGGNGILTSNRVARHFADVEAIHTYEGTETVQALIMGRDITGISAFA
>NZ_CP013297.1|WP_047119972.1|937792_938482_-|TetR-family-transcriptional-regulator
MIPSSAVPSAALNLLITQGFDATSVDELATAAGISRSTFFRRFGSKENMVFADQEMIITHVETTLAASSVDATQTLIDAAHVVFDQYTANPEAAQLRHKLLSSVPSLRERELVSTHRYERAFYQFLARRDLVSTPAAHALGLGISAGLVAIHNDHLRMWLREPHSTDRTKLAHDVLIFLERFSDVLNPNDELRKPASAAPSVVVSVLPAGADEQSILDAVAKALRERQH
>NZ_CP013297.1|WP_113608156.1|938635_939070_+|hypothetical-protein
MGISIANAALRLVSGAFILNSGINKLRLDEASAAGLQQMAANGVPQLGEMEPAAFGKMLSIGEISLGSALLLPLIPSRLAGLGLGAFSGVILASYLRTPGLTESDGIRPTQDGTALAKDVWLAGMAVALIFGRRSTKKAKNKKK
>NZ_CP013297.1|WP_047119971.1|939171_939411_+|YtxH-domain-containing-protein
MGFLDDAKKKLGEAVENVKEFAEDATENVKEFAEDATENVKEFAAGATENVKEFANDAQEKIGEKVEEFKGGNKPNGEA

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Crispr_ID: NZ_CP013297_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013297_3

3810472-3810646

Orphan

Consensus_repeat	Method
TGTGGTGCCGTCCTCGGTGACCAACACG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013297_3

>merge|NZ_CP013297|3|3810472-3810646|PILER-CR
GGTGCCGTCGTCGGTGACCCAGACCTTGCGGGTGACGCCGTCGATGCTAACGATGGCTTCCTGGACCACCTGTGTGGTGCCGTCCTCGGTCACGAACACGTACTCGGTCTTGCCGGTCACGCCGTTGATCTTGGACTGGACCTCACCTGTGGTGCCGTCCTCGGTGACCGCCACG

>NZ_CP013297|3|1|3810472-3810646|PILER-CR
GGTGCCGTCGTCGGTGACCCAGACCTTG	CGGGTGACGCCGTCGATGCTAACGATGGCTTCCTGGACCACCTGTGTGGTGCC
GTCCTCGGTCACGAACACGTACTCGGTC	TTGCCGGTCACGCCGTTGATCTTGGACTGGACCTCACCTGTGGTGCC
GTCCTCGGTGACCGCCACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013297.1\|WP_152666712.1\|3803157_3803640_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047117734.1\|3817406_3817808_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047117743.1\|3805572_3807801_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047117657.1\|3801004_3801343_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047117658.1\|3800372_3800948_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_152666722.1\|3815573_3815969_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_052772162.1\|3815995_3816382_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047117740.1\|3813901_3814501_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047117654.1\|3803704_3804331_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047117656.1\|3802754_3803165_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184281
NZ_CP013297.1\|WP_157359302.1\|3815350_3815503_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047117739.1\|3814503_3814743_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212778
NZ_CP013297.1\|WP_047117738.1\|3814831_3815350_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047117741.1\|3813554_3813893_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_052772148.1\|3801345_3802674_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227919
NZ_CP013297.1\|WP_060617047.1\|3804346_3805576_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047117659.1\|3800001_3800286_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_047117736.1\|3816378_3816795_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_052772161.1\|3816797_3817394_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013297.1\|WP_157359301.1\|3807833_3808553_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013297.1\|WP_047117739.1\|3814503_3814743_-\|hypothetical-protein	gnl\|CDD\|212778	cd11844, SH3_CAS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding proteins. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes including migration, chemotaxis, apoptosis, differentiation, and progenitor cell function. They mediate the signaling of integrins at focal adhesions where they localize, and thus, regulate cell invasion and survival. Over-expression of these proteins is implicated in poor prognosis, increased metastasis, and resistance to chemotherapeutics in many cancers such as breast, lung, melanoma, and glioblastoma. CAS proteins have also been linked to the pathogenesis of inflammatory disorders, Alzheimer's, Parkinson's, and developmental defects. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. Vertebrates contain four CAS proteins: BCAR1 (or p130Cas), NEDD9 (or HEF1), EFS (or SIN), and CASS4 (or HEPL). The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.	0.0046289
NZ_CP013297.1\|WP_052772148.1\|3801345_3802674_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227919	COG5632, COG5632, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	9.08005e-20
NZ_CP013297.1\|WP_047117656.1\|3802754_3803165_-\|hypothetical-protein	gnl\|CDD\|184281	PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional.	0.00854821

>NZ_CP013297.1|WP_157359301.1|3807833_3808553_-|hypothetical-protein
MEGKLKGQARPVGRRKWSLQTSAATTPGEVAALMGFVNGDWGAGPFTFVSADAPITNLLSPAATSGQYGPLVTNLLAGGPVDLGADGWAARSVRSLAPTEFGNGQEILLGTDFTPVRQGVAVTGSAWVKRAGGRVRLYWYGPDSTVPLGSTTSSATATSTWSRVSVTGLPVAGAVRCRLVAFEVEHATRPAITWSEGVLDYADGQGCQKAVVHAAARSLTMAVPARIYGDLSFTVTEVG
>NZ_CP013297.1|WP_047117743.1|3805572_3807801_-|hypothetical-protein
MAYTSRVLVNGVVRPHLSWSVDRDLVGDLPEQVVAAGGVAQASGSIVWASDEDVSDGGRNPWNPSTGWIPAEGDKVQIFAGDGTSEWSQFVGVIDSSTGDIGGGFQSKIVDRIDDFSRKVRLPALVDVMPPVEGQTAFRRFRLSPRFYVTTAMRRAGFNVVAPAEVGCVVDLPAVGSLWPLVGELIRCARGTDAALSPLWPDGIHVADANAAYRPASPRAGDKPVQLTLNIAPEHSGTASVQVIYGGSNVILRATATHVLFLIGGVGTLCSVPWTGGVIAQALFVNGSVTLRTSAGQTATGAGAWTNSTLMSEVRLVADPGSRVNGVQVSHPTQPWHDFASLNFTPTAKITTGTMHDTLMAGPATADQSAADLLSEVGQCLLWPFWIDETGVAKAIQSDALRGQASVQTVTTLDDIRSLSWRKDLLGARSEIITSYDTWTINRSTTYSVELWSSSESVVMSSAGEHVSLIEEPDGEAWLEVDEQLTVPGVNSLADANRGIGSIAGGIYTDGTTEEWATLPSAKKLDVALLKISDGAWKLKHTAGTLAAGNQVELRTWSSTFTGRTELWPYQWDKQLPVLRGKGKAVRTNKTRTPTIVGNIGPILEHDCKHWGTGHLDNNETRVVDAVTDFISTQVVTPQPVITGMRLGFDPRRQLGDVITVQSHTLMGVELKCLIVGLNTSAGGSFDQEVAVRVIKATSTFTTYADFAAAWGPTADYNSFAAAWNVVSTYKDFDDTPRRGTD
>NZ_CP013297.1|WP_060617047.1|3804346_3805576_-|hypothetical-protein
MSFNDTHEFTSRGIPYPKDVALIANKSSPESIRYDLEMQAKVTDQELVKLQEDTDKKVSSDDARLPYFVTNDAFMLVAHDRRNRATDLALDWTGQFDEFVVRRLAARMKAYLEVSDGAGLPTDRMLVDGVLVPVNTDMRSSTIWGSSSSQFIASALGAEFSVVAVSFDGQGKSAERIQHTAARSGAVPALLTVTGGQIPASGAVTVTASNMTTALALKPFSGTLHGVPGTLSATNTAMTFTRTGSGTAVTVPNGTPFISDLGTAYRQYSTHLWAGKNNWSDSGGAALVIDYTKKMFAWLSPQTKRSMVWGHFVDSDQTAGNAQHTFVATVNAALKMFFGDLFFDVQTYIASPQLWADAGISPTSADLTAQANRIKPPSVSQDAGHFNDAGNLAVAKAAMRHMRTVLGWY
>NZ_CP013297.1|WP_047117654.1|3803704_3804331_-|hypothetical-protein
MANQGLALKVDGLSSPPANTPVVPGRILYKDSFTGDTASVIGRQTDASVAAQRATWVGTENGFATASGKLVKGSLAATSSALLATTAAAVAVTIKLNKRPTTSGFYLDVLRGTVTGAPPSYRLEITDATCRLMKRFAGAHTYLSGSVSIKPGDVISVRCIEGEVTLVVNGLVLASVMDSDVTSGNYAGIASTGTVAGFEIDWLQVETF
>NZ_CP013297.1|WP_152666712.1|3803157_3803640_-|hypothetical-protein
MPTHVFKPTRNPPRWWDRLLVHPLDMTVAVVAVLFGVLVVLSLFVPEFIPSKSMDKMPWPIVILVSGFLGTGGMMSLIGLNWWGDNVSTGWAVEQFGWWFTAGGFATYALSVSWHYPGSLFSWGVPLALGIGSLIRAISIIMIERSVRATLKEVEEHNHG
>NZ_CP013297.1|WP_047117656.1|3802754_3803165_-|hypothetical-protein
MGEASIVAIIIAVLGIAGGGGYWGYKQFKREAPVKKRDADIAVAEKSQQMALAVAEESRKDVERLREDVTYEREERQKLAGRVDSLETQVREANRTIQALREGLRIFHAAWDDLTHRWAHYRQSEHPPARPNITID
>NZ_CP013297.1|WP_052772148.1|3801345_3802674_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MREQLVKHKDKIYDGTNGCTSITVHETANTSKGADAQAHADLQTSGNVRQASWHITVDDTEAIRSYPDTAQCWHGGTREAAESSIAVEICVNSDGDYDQAFENAAKVVRDLRRQHGIGRSKVYDHAHWTGKDCPSKMRAAGRWNEFLDLTDPNQKENPEGMISPFEGRLTGHHNDRGGYPGHKGLDIAPPKPGQVGMPVYAAFAGTWQEIVRNAKPGNKSSTWAQRRTGNGGLISNPDGEGNGYNHMRPLDHFKVGDKVVAGQLLGYNDRSGTQTGPHLHFELWADWRNSNSDYAPELAFEKFKIKIGSAPERTSTAPVKPSGGGSKPAAKPSVPADVKKKLKAMGYKNPDAGDVEKYQAWHGLVPDGDWGSKTEAKYQEVVRAQNATKKMLGVPDNWASDGYWGATSKKWAGYTSGRNGWNNPHGYLTKKYINNLKKVKAW
>NZ_CP013297.1|WP_047117657.1|3801004_3801343_-|hypothetical-protein
MAKHIATGVPTQVAHPWQATARTAVAYLLAAIAFLAAALPILQEVMGDYLPESWAAWLTAAVAFLVALATLITRLMALANAQGFLAKIGLGTGVEKEPLPIDVVIDSDGTSE
>NZ_CP013297.1|WP_047117658.1|3800372_3800948_+|hypothetical-protein
MDSLAIVIPALIAIAAVFIGAGLQRLGTILSERRLLVGQLEGLAVAVMEYGDAVSALRDPQHRTLYENPSQEAIDYRMRAYSTNYRVREIMSALNGNCNSLGRKSGLVILAKAQDLEDAILEICKAMFDVNLVARHLPRGLPQVDPFSSQTVIDKLDMVDERVDATEQARKNLLEAAGNSYRVASFKRDRK
>NZ_CP013297.1|WP_047117659.1|3800001_3800286_+|hypothetical-protein
MDDIKSPGMTLLKIAGWLLGGGLLILLLSMLMNITTQMYVQAAFLLGALPFGVLFGIVGLIMHLNFRTKMQIMKSEREWSGRYGSEEPPAGNSL
>NZ_CP013297.1|WP_047117741.1|3813554_3813893_-|hypothetical-protein
MKAAANFQRPPSAFLGGRTWGSRDHLLVFAFQLYEDTKCASCGRSVLVCRNEKNKGIWEAETTICTAQAAIQERQSQSGYTPEPGEMLYSRPIDDDLLTGSGLVFNPNSNPS
>NZ_CP013297.1|WP_047117740.1|3813901_3814501_-|hypothetical-protein
MSEQTTQNAAIEPTEFNFADWIAGAHKPTRSSTVHQRGDLIAELDRLQEKIEIAEMVPAEERSISDVSAETLRAQYAEIAQQFHDSGLLVKTSGHTKDEQLDISEALDQHLKEKYPESDESAEALKARGRSGSTLTYWLLADAIQEPEFTVEQLQQMHRIVGEAQFKRIVDDYQLASQSINEPDADFLPKPSTTQETDA
>NZ_CP013297.1|WP_047117739.1|3814503_3814743_-|hypothetical-protein
MSKTIPGVPESLTREQFTSLFTAVGIKPEDTQELSFRRGGIYATVFERTPEGGRMLHEDGSGCVTHEIFIPVIDEKQGA
>NZ_CP013297.1|WP_047117738.1|3814831_3815350_-|hypothetical-protein
MGARVLAEGKPRVMVLTTKPADPAKPTKTELDAGIYASPDILTSDFNWSTSDSDKIAEKPLDADGNANAIGASNYNTGLTLWRKFDPTTGAPDLTSEKLWEALKAKGATVWIYVRETGKASADEVEAEDEIYLGGEVVTDSPQRTEGSGFIKRRVPLEAQRMHENIKVAAGA
>NZ_CP013297.1|WP_157359302.1|3815350_3815503_-|hypothetical-protein
MSGFVEAYSKTTGKKQIIPEAWLDRKDPPFNDFVLNAPAAKAEPAKKEAK
>NZ_CP013297.1|WP_152666722.1|3815573_3815969_-|hypothetical-protein
MAPPGIRVYLLEPEISVPPVPADFPYVFLWGRPGDRLSGDEQSGSLDDEYSSLLVEVNATYVGLTPESMDSVMHRCRDAWDRKTVAVPGLAPARLKQSALQDARADKDAPLTNKRRPVFAVDQFRFIADRL
>NZ_CP013297.1|WP_052772162.1|3815995_3816382_-|hypothetical-protein
MSGQEIHALARDMGKVPDKLVSKIAKIMPKTGLAMKQRMTKDLQRSSSFRPAARSVDYDVKKLGFGGDTVIQVEVGPNVARAAAGALENIAYFGTSMGGGTVPDPVVPMRLEAPVFFGFMEMATEGLL
>NZ_CP013297.1|WP_047117736.1|3816378_3816795_-|hypothetical-protein
MQRRAIAATRRGARRAGELHVHHFVLREVIGQEMDPDTAVVVDRFREVDTGWCKVQGFNAQGTEPEAGGHSYLSGKFQVHFRRGASAAKQYRSDMLLEIVGSKIPEDVGLVGQLFRLTEPDLKSLRTADRWNVEVTLS
>NZ_CP013297.1|WP_052772161.1|3816797_3817394_-|hypothetical-protein
MGLITKADLEQYPIPDDIDLTAPITTVLIESASAEVIDAAGSPILSTRSTVDLPALRARILRLPGLPVTEVHEVTIDGQPVTDYKRINAGLYRATGWSEGSLEIVTVDYTHGLPSLPADIKDLICRMVISALNNAADGADGLAINNGRLSSVAIDDYKESYSTGDTVDAITEMTLPQRARDRLAKRFGNYGAKVVGSL
>NZ_CP013297.1|WP_047117734.1|3817406_3817808_-|hypothetical-protein
MAPYVGKSGTLLNLKGAVASGLIASGIVVEVEEGLTAEQLAKIASEKFGGNDPVAEATPKASTTVEKPRGNASRDDWVAYALSQGKSEDDLAGLKQGEIRELLEPADPATSETGSTESEDGDQGDGTNPDDTE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013297_2	2.4\|926031\|25\|NZ_CP013297\|CRT	926031-926055	25	NZ_CP013297.1	926499-926523	0	1.0
NZ_CP013297_2	2.10\|926328\|22\|NZ_CP013297\|CRT	926328-926349	22	NZ_CP013297.1	926457-926478	1	0.955
NZ_CP013297_2	2.6\|926118\|37\|NZ_CP013297\|CRT	926118-926154	37	NZ_CP013297.1	926487-926523	2	0.946

1. spacer 2.4|926031|25|NZ_CP013297|CRT matches to position: 926499-926523, mismatch: 0, identity: 1.0

ggattcggctggtgctgataccaac	CRISPR spacer
ggattcggctggtgctgataccaac	Protospacer
*************************

2. spacer 2.10|926328|22|NZ_CP013297|CRT matches to position: 926457-926478, mismatch: 1, identity: 0.955

tgcttcgtctgctgatgccaac	CRISPR spacer
tgcttcggctgctgatgccaac	Protospacer
******* **************

3. spacer 2.6|926118|37|NZ_CP013297|CRT matches to position: 926487-926523, mismatch: 2, identity: 0.946

tgaggctggtgcggataccgctggtgctgataccaac	CRISPR spacer
tgaggctggtgcggattcggctggtgctgataccaac	Protospacer
**************** * ******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013297_2	2.5\|926076\|22\|NZ_CP013297\|CRT	926076-926097	22	MK496729	Capybara microvirus Cap1_SP_148, complete genome	4364-4385	2	0.909
NZ_CP013297_2	2.7\|926175\|22\|NZ_CP013297\|CRT	926175-926196	22	MK496729	Capybara microvirus Cap1_SP_148, complete genome	4364-4385	2	0.909
NZ_CP013297_2	2.11\|926370\|22\|NZ_CP013297\|CRT	926370-926391	22	MK496729	Capybara microvirus Cap1_SP_148, complete genome	4364-4385	2	0.909
NZ_CP013297_2	2.12\|926412\|25\|NZ_CP013297\|CRT	926412-926436	25	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	316973-316997	3	0.88
NZ_CP013297_2	2.9\|926274\|34\|NZ_CP013297\|CRT	926274-926307	34	MN693535	Marine virus AFVG_25M313, complete genome	12359-12392	8	0.765
NZ_CP013297_2	2.2\|925917\|37\|NZ_CP013297\|CRT	925917-925953	37	NC_020846	Vibrio phage pYD21-A genomic sequence	14184-14220	9	0.757
NZ_CP013297_2	2.3\|925974\|37\|NZ_CP013297\|CRT	925974-926010	37	NC_020846	Vibrio phage pYD21-A genomic sequence	14184-14220	9	0.757
NZ_CP013297_2	2.2\|925917\|37\|NZ_CP013297\|CRT	925917-925953	37	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	524108-524144	11	0.703
NZ_CP013297_2	2.3\|925974\|37\|NZ_CP013297\|CRT	925974-926010	37	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	524108-524144	11	0.703

1. spacer 2.5|926076|22|NZ_CP013297|CRT matches to MK496729 (Capybara microvirus Cap1_SP_148, complete genome) position: , mismatch: 2, identity: 0.909

aaatgtagacgctgaagctggt	CRISPR spacer
aaatgtagacgctgaagatggg	Protospacer
***************** ***

2. spacer 2.7|926175|22|NZ_CP013297|CRT matches to MK496729 (Capybara microvirus Cap1_SP_148, complete genome) position: , mismatch: 2, identity: 0.909

aaatgtagacgctgaagctggt	CRISPR spacer
aaatgtagacgctgaagatggg	Protospacer
***************** ***

3. spacer 2.11|926370|22|NZ_CP013297|CRT matches to MK496729 (Capybara microvirus Cap1_SP_148, complete genome) position: , mismatch: 2, identity: 0.909

aaatgtagacgctgaagctggt	CRISPR spacer
aaatgtagacgctgaagatggg	Protospacer
***************** ***

4. spacer 2.12|926412|25|NZ_CP013297|CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 3, identity: 0.88

tgaggccggtgcggataccgctggt	CRISPR spacer
cgcggccggtgcggatacggctggt	Protospacer
.* *************** ******

5. spacer 2.9|926274|34|NZ_CP013297|CRT matches to MN693535 (Marine virus AFVG_25M313, complete genome) position: , mismatch: 8, identity: 0.765

aaatgtagacgctgaagctgatgctgaggctggt	CRISPR spacer
agatatagacgctgaatctgatgctgcagatcgc	Protospacer
*.**.*********** ********* .* * *.

6. spacer 2.2|925917|37|NZ_CP013297|CRT matches to NC_020846 (Vibrio phage pYD21-A genomic sequence) position: , mismatch: 9, identity: 0.757

ggattcggctggtgctgatgcgcaggctgatgcgaac	CRISPR spacer
tgattcggctggtggtgatgagcaggcaaaaataaac	Protospacer
 ************* ***** ****** .* ...***

7. spacer 2.3|925974|37|NZ_CP013297|CRT matches to NC_020846 (Vibrio phage pYD21-A genomic sequence) position: , mismatch: 9, identity: 0.757

ggattcggctggtgctgatgcgcaggctgatgcgaac	CRISPR spacer
tgattcggctggtggtgatgagcaggcaaaaataaac	Protospacer
 ************* ***** ****** .* ...***

8. spacer 2.2|925917|37|NZ_CP013297|CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.703

ggattcg-----gctggtgctgatgcgcaggctgatgcgaac	CRISPR spacer
-----cgcaggcgctggtgctgatggccaggctgatgccgga	Protospacer
     **     *************  *********** ..

9. spacer 2.3|925974|37|NZ_CP013297|CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.703

ggattcg-----gctggtgctgatgcgcaggctgatgcgaac	CRISPR spacer
-----cgcaggcgctggtgctgatggccaggctgatgccgga	Protospacer
     **     *************  *********** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1219702 : 1237318

Mycobacterium_phage(30.77%)

capsid,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047119754.1\|1219702_1220095_+	hypothetical protein	A0A2H4P989	Corynebacterium_phage	1.1e-21	44.1
WP_052772447.1\|1220078_1220915_+	hypothetical protein	V5R922	Arthrobacter_phage	8.1e-78	54.0
WP_047119753.1\|1220917_1221463_+	hypothetical protein	G9FH01	Rhodococcus_phage	3.7e-31	51.5
WP_047119752.1\|1221462_1221972_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_052772446.1\|1222823_1223294_+	hypothetical protein	A0A1P8VV35	Rathayibacter_phage	1.2e-14	50.0
WP_047119751.1\|1223290_1223665_+	hypothetical protein	NA	NA	NA	NA
WP_047119750.1\|1223661_1224003_+	hypothetical protein	NA	NA	NA	NA
WP_052772445.1\|1224013_1224748_+	hypothetical protein	A0A142KAB1	Gordonia_phage	2.0e-19	52.4
WP_052772444.1\|1224763_1226011_+	AAA family ATPase	V5R9D2	Arthrobacter_phage	2.1e-69	39.1
WP_047119749.1\|1226014_1226359_+	hypothetical protein	NA	NA	NA	NA
WP_152666878.1\|1226355_1226769_+	hypothetical protein	NA	NA	NA	NA
WP_047119747.1\|1227034_1227298_+	hypothetical protein	NA	NA	NA	NA
WP_047119746.1\|1227294_1227522_+	hypothetical protein	NA	NA	NA	NA
WP_157359278.1\|1227518_1227665_+	hypothetical protein	NA	NA	NA	NA
WP_152666877.1\|1227661_1228375_+	hypothetical protein	NA	NA	NA	NA
WP_047119745.1\|1228496_1228712_+	hypothetical protein	NA	NA	NA	NA
WP_047119744.1\|1228908_1229406_+	hypothetical protein	A0A142UMD2	Mycobacterium_phage	2.0e-31	45.2
WP_052772443.1\|1229402_1229993_+	hypothetical protein	V5R9D8	Arthrobacter_phage	5.2e-31	42.5
WP_047119742.1\|1230564_1230897_+	hypothetical protein	S5YNW3	Mycobacterium_phage	1.3e-26	60.8
WP_082123948.1\|1231122_1231389_+	hypothetical protein	NA	NA	NA	NA
WP_152666876.1\|1231403_1231583_+	hypothetical protein	NA	NA	NA	NA
WP_082123947.1\|1231631_1232456_+	HNH endonuclease	A0A2H4PF54	Gordonia_phage	6.0e-25	33.2
WP_152666875.1\|1232543_1232951_+	hypothetical protein	NA	NA	NA	NA
WP_047119740.1\|1232985_1234416_+	hypothetical protein	A0A1P8VV92	Rathayibacter_phage	8.8e-117	48.4
WP_052772441.1\|1234420_1235752_+\|portal	phage portal protein	A0A1I9SBW7	Mycobacterium_phage	1.5e-41	28.1
WP_047119737.1\|1235809_1236364_+	hypothetical protein	NA	NA	NA	NA
WP_047119736.1\|1236391_1237318_+\|capsid	phage major capsid protein	A0A1I9SBX1	Mycobacterium_phage	2.9e-68	48.4

DBSCAN-SWA_2

1240374 : 1252317

Brevibacterium_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047119730.1\|1240374_1244517_+	peptidoglycan DD-metalloendopeptidase family protein	A0A221J6S3	Arthrobacter_phage	1.1e-37	35.7
WP_152666871.1\|1244680_1245355_+	hypothetical protein	A0A249XNP2	Brevibacterium_phage	1.7e-22	35.6
WP_152666870.1\|1245365_1246370_+	hypothetical protein	A0A249XNP0	Brevibacterium_phage	2.7e-48	36.5
WP_157359279.1\|1246382_1247858_+	hypothetical protein	A0A249XQ84	Brevibacterium_phage	9.7e-18	34.1
WP_047119726.1\|1247854_1250113_+	hypothetical protein	A0A249XNP1	Brevibacterium_phage	5.5e-20	34.3
WP_047119725.1\|1250188_1250437_+	hypothetical protein	NA	NA	NA	NA
WP_047119724.1\|1250439_1252317_+	hypothetical protein	A0A1Z1DEI0	Bacillus_phage	8.5e-27	30.0

DBSCAN-SWA_3

3385700 : 3393873

Microbacterium_phage(33.33%)

portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047117936.1\|3385700_3387083_+	hypothetical protein	G9FGU7	Rhodococcus_phage	6.9e-58	36.7
WP_052772190.1\|3387166_3388390_+\|portal	phage portal protein	A0A2R4A099	Microbacterium_phage	3.1e-70	40.3
WP_047117937.1\|3388386_3390000_+	hypothetical protein	A0A2R4A075	Microbacterium_phage	2.7e-82	39.7
WP_047117938.1\|3390002_3390320_+	hypothetical protein	NA	NA	NA	NA
WP_047117939.1\|3390323_3390686_+	hypothetical protein	NA	NA	NA	NA
WP_047117940.1\|3390695_3391112_+	hypothetical protein	A0A2P1CBZ1	Gordonia_phage	5.7e-24	43.2
WP_047117941.1\|3391114_3391516_+	hypothetical protein	A0A2P1CBZ9	Gordonia_phage	4.6e-23	46.8
WP_052772191.1\|3391518_3391821_+	hypothetical protein	NA	NA	NA	NA
WP_052772192.1\|3391953_3393873_+	hypothetical protein	A0A222ZGY6	Arthrobacter_phage	3.1e-48	36.1

DBSCAN-SWA_4

3814831 : 3826008

Streptomyces_phage(55.56%)

terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047117738.1\|3814831_3815350_-	hypothetical protein	A0A249XNM8	Brevibacterium_phage	2.3e-22	42.4
WP_157359302.1\|3815350_3815503_-	hypothetical protein	NA	NA	NA	NA
WP_152666722.1\|3815573_3815969_-	hypothetical protein	NA	NA	NA	NA
WP_052772162.1\|3815995_3816382_-	hypothetical protein	NA	NA	NA	NA
WP_047117736.1\|3816378_3816795_-	hypothetical protein	NA	NA	NA	NA
WP_052772161.1\|3816797_3817394_-	hypothetical protein	D7NW55	Streptomyces_phage	2.5e-25	40.7
WP_047117734.1\|3817406_3817808_-	hypothetical protein	NA	NA	NA	NA
WP_047117733.1\|3817810_3818632_-	hypothetical protein	A0A1C9LZX3	Mycobacterium_phage	2.1e-62	52.1
WP_052772160.1\|3818650_3819373_-	hypothetical protein	D7NW52	Streptomyces_phage	1.0e-12	46.9
WP_152666721.1\|3819384_3820503_-	hypothetical protein	A0A1C9EHV4	Gordonia_phage	2.7e-36	40.5
WP_047117732.1\|3820502_3821927_-\|portal	phage portal protein	D7NW49	Streptomyces_phage	5.2e-77	38.3
WP_047117731.1\|3821929_3823663_-\|terminase	terminase large subunit	A0A2H5BLT3	Streptomyces_phage	2.5e-182	56.5
WP_047117730.1\|3823708_3824308_-\|terminase	phage terminase small subunit P27 family	A0A2H5BLR0	Streptomyces_phage	8.2e-32	41.8
WP_047117729.1\|3824948_3825683_-	hypothetical protein	NA	NA	NA	NA
WP_047117761.1\|3825666_3826008_-	VRR-NUC domain-containing protein	A0A1B0XUQ1	Freshwater_phage	6.3e-13	43.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013297

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection