CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP013338	Raoultella ornithinolytica strain Yangling I2, complete genome	4 crisprs	csa3,WYL,cas3,DEDDh,DinG,cas14j	3
NZ_CP013339	Raoultella ornithinolytica strain Yangling I2 plasmid pKPYL1, complete sequence	0 crisprs	csa3	2
NZ_CP013340	Raoultella ornithinolytica strain Yangling I2 plasmid pKPYL2, complete sequence	0 crisprs	csa3	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013338_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013338_1

3275807-3275902

Orphan

Consensus_repeat	Method
CCGGGATTGTGTATCGAACCGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013338_1

>merge|NZ_CP013338|1|3275807-3275902|CRISPRCasFinder
CCGGGATTGTGTATCGAACCGCATGTATTGCCCGGTGGCGGCTTGCGCCTTACCGGGCCTACGGGCCGGACGCCGGGATTGTGTATCGCACCGCAT

>NZ_CP013338|1|1|3275807-3275902|CRISPRCasFinder
CCGGGATTGTGTATCGAACCGCAT	GTATTGCCCGGTGGCGGCTTGCGCCTTACCGGGCCTACGGGCCGGACG
CCGGGATTGTGTATCGCACCGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013338.1\|WP_064357164.1\|3278128_3279247_+\|spermidine/putrescine-ABC-transporter-ATP-binding-protein-PotA	unknown	unknown	gnl\|CDD\|236523
NZ_CP013338.1\|WP_077266756.1\|3264648_3265449_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293799
NZ_CP013338.1\|WP_004860615.1\|3280084_3280870_+\|spermidine/putrescine-ABC-transporter-permease-PotC	unknown	unknown	gnl\|CDD\|236542
NZ_CP013338.1\|WP_004860634.1\|3270306_3271677_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP013338.1\|WP_004860619.1\|3279230_3280088_+\|spermidine/putrescine-ABC-transporter-permease-PotB	unknown	unknown	gnl\|CDD\|181910
NZ_CP013338.1\|WP_004860640.1\|3269661_3270303_+\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|234690
NZ_CP013338.1\|WP_004860623.1\|3276624_3277854_-\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
NZ_CP013338.1\|WP_064357165.1\|3280866_3281913_+\|spermidine/putrescine-ABC-transporter-substrate-binding-protein-PotD	unknown	unknown	gnl\|CDD\|181913
NZ_CP013338.1\|WP_004860645.1\|3267980_3268439_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NZ_CP013338.1\|WP_064357162.1\|3267339_3267960_+\|23S-rRNA-pseudouridine(2457)-synthase-RluE	unknown	unknown	gnl\|CDD\|183115
NZ_CP013338.1\|WP_077266777.1\|3282019_3282541_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP013338.1\|WP_004860652.1\|3265825_3267076_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NZ_CP013338.1\|WP_004860631.1\|3272369_3273044_+\|two-component-system-response-regulator-PhoP	unknown	unknown	gnl\|CDD\|182755
NZ_CP013338.1\|WP_032717229.1\|3273040_3274507_+\|two-component-system-sensor-histidine-kinase-PhoQ	unknown	unknown	gnl\|CDD\|182754
NZ_CP013338.1\|WP_064357163.1\|3275988_3276492_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP013338.1\|WP_064357167.1\|3282565_3284203_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341284
NZ_CP013338.1\|WP_064357789.1\|3285371_3285983_+\|cytochrome-B	unknown	unknown	gnl\|CDD\|226602
NZ_CP013338.1\|WP_004860624.1\|3274631_3275753_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225406
NZ_CP013338.1\|WP_015584630.1\|3268495_3269602_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP013338.1\|WP_048024997.1\|3284507_3285227_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
NZ_CP013338.1\|WP_064357164.1\|3278128_3279247_+\|spermidine/putrescine-ABC-transporter-ATP-binding-protein-PotA	gnl\|CDD\|236523	PRK09452, potA, spermidine/putrescine ABC transporter ATP-binding protein PotA.	0
NZ_CP013338.1\|WP_077266756.1\|3264648_3265449_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293799	cd07713, DHPS-like_MBL-fold, Methanocaldococcus jannaschii dihydropteroate synthase, Thermoanaerobacter tengcongensis Tflp, and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes Methanocaldococcus jannaschii 7,8-dihydropterin-6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase (EC 2.5.1.15), a folate biosynthetic enzyme also known as dihydropteroate synthase and 7,8 dihydropteroate synthase. Thermoanaerobacter tengcongensis Tflp is a ferredoxin-like member. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.69363e-82
NZ_CP013338.1\|WP_004860615.1\|3280084_3280870_+\|spermidine/putrescine-ABC-transporter-permease-PotC	gnl\|CDD\|236542	PRK09500, potC, spermidine/putrescine ABC transporter membrane protein; Reviewed.	2.18086e-160
NZ_CP013338.1\|WP_004860634.1\|3270306_3271677_+\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP013338.1\|WP_004860619.1\|3279230_3280088_+\|spermidine/putrescine-ABC-transporter-permease-PotB	gnl\|CDD\|181910	PRK09497, potB, spermidine/putrescine ABC transporter membrane protein; Reviewed.	4.0752e-176
NZ_CP013338.1\|WP_004860640.1\|3269661_3270303_+\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	3.47586e-117
NZ_CP013338.1\|WP_004860623.1\|3276624_3277854_-\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
NZ_CP013338.1\|WP_064357165.1\|3280866_3281913_+\|spermidine/putrescine-ABC-transporter-substrate-binding-protein-PotD	gnl\|CDD\|181913	PRK09501, potD, spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed.	0
NZ_CP013338.1\|WP_004860645.1\|3267980_3268439_+\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.36205e-62
NZ_CP013338.1\|WP_064357162.1\|3267339_3267960_+\|23S-rRNA-pseudouridine(2457)-synthase-RluE	gnl\|CDD\|183115	PRK11394, PRK11394, 23S rRNA pseudouridine(2457) synthase RluE.	1.06361e-123
NZ_CP013338.1\|WP_077266777.1\|3282019_3282541_+\|hypothetical-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	0.000626603
NZ_CP013338.1\|WP_004860652.1\|3265825_3267076_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_CP013338.1\|WP_004860631.1\|3272369_3273044_+\|two-component-system-response-regulator-PhoP	gnl\|CDD\|182755	PRK10816, PRK10816, two-component system response regulator PhoP.	3.84318e-163
NZ_CP013338.1\|WP_032717229.1\|3273040_3274507_+\|two-component-system-sensor-histidine-kinase-PhoQ	gnl\|CDD\|182754	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ.	0
NZ_CP013338.1\|WP_064357163.1\|3275988_3276492_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.04462e-36
NZ_CP013338.1\|WP_064357167.1\|3282565_3284203_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341284	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles. This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family catalyzes the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins.	0
NZ_CP013338.1\|WP_064357789.1\|3285371_3285983_+\|cytochrome-B	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	5.13091e-51
NZ_CP013338.1\|WP_004860624.1\|3274631_3275753_+\|cupin-domain-containing-protein	gnl\|CDD\|225406	COG2850, COG2850, Uncharacterized conserved protein [Function unknown].	0
NZ_CP013338.1\|WP_015584630.1\|3268495_3269602_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP013338.1\|WP_048024997.1\|3284507_3285227_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.02797e-85

>NZ_CP013338.1|WP_004860624.1|3274631_3275753_+|cupin-domain-containing-protein
MDYQLTLNWPDFIERYWQKRPVVLKRGFANFVDPISPDELAGLAMESEVDSRLVSHQDGKWQVSHGPFESYDHLSENNWSLLVQAVNNWHEPTAALMQPFRALPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGDKVPMKQHCPHPDLLQVDPFDAIIDEEMEPGDILYIPPGFPHEGYSLENSLNYSVGYRAPNARELFSGFADYILQRELGSQRYADPDVPSRDHPADILPAELDRLRDMMLGLINQPEHFKQWFGEFITQSRHELDVAPAEPPYQPDEIYDALQQGDRLVRLGGLRVLRIDGEVFVNGEKINSPHRPALDALATHLSLNAEHFGDALEDPSFLAMLAALVNCGYWFFED
>NZ_CP013338.1|WP_032717229.1|3273040_3274507_+|two-component-system-sensor-histidine-kinase-PhoQ
MKSPLRHILPLSLRVRFLLATAAVVLVLSLAYGMVALVGYSVSFDKTTFRLLRGESNLFYMLAKWENNHIDVDIPENLNMQSPTVTLIYDAKGKLLWMQRDVGWLAKRIQPEWLKRNGFHEIESDVDSSSMLLRNNHQFQEELDALRQQDDGSEMTHSVAINIYPATDKLPQLSIVVIDTIPVELKRSYMVWSWFIYVLVANLLLVIPLLWVAAWWSLRPIESLAKEVRELEEHHREMLNPNTTRELTRLVSNLNRLLTSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRGEKIDLNEAEPIMLEQISRISQQIGYYLHRASMRSGGTLLSRELHPIAPLLDKLTSALNKVYQRKGVNISLDISPEISFVGEQNDFMEVMGNVLDNACKYCLEFVEVSVRQTNDNHLHILVEDDGPGIPLNQRTAVFDRGQRADTLRPGQGVGLSVAREIVEQYDGDILTGESLLGGACMEVVFGRQLPDDTES
>NZ_CP013338.1|WP_004860631.1|3272369_3273044_+|two-component-system-response-regulator-PhoP
MRVLVVEDNALLRHHLKVQLQELGHQVDAAEDAKEADYYLGEHVPDIAIVDLGLPDEDGLSLIRRWRSHDVSVPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLRRNSGLASQVISLPPFQVDLSRRELSINEQPIKLTAFEYTIMETLIRNRGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQTQHPHDVITTVRGQGYLFELRE
>NZ_CP013338.1|WP_004860634.1|3270306_3271677_+|adenylosuccinate-lyase
MELSSLTAVSPVDGRYGDKVSALRGIFSEFGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADANGFLDKIVADFSVEDAQRIKTIERTTNHDVKAVEYFLKEKVADIAELHAVSEFIHFACTSEDINNLSHALMLKTARDEVVLPYWRKLIDAVKDLAVQYRDVPLLSRTHGQPATPSTMGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCIARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAMMQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLELNGDRLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEGMQQFIDSLPLPEDEKVRLKAMTPANYIGRATTMVDELK
>NZ_CP013338.1|WP_004860640.1|3269661_3270303_+|high-frequency-lysogenization-protein-HflD
MAKNYYDITLALAGICQAARLVQQLAHQGHCDSDALHVSLNSIIDLNPDSTLAVFGGSEANLRLGLETLLGVLNSGSRQGLNAELTRYTLSLMVLERKLDGSKGAMDTLGNRIAGLRRQLEHFDLQSETLLSAMAGIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRASLLAGIRAAVLWHQVGGGRMQLMFSRNRLVNQAKQILAHLTPEL
>NZ_CP013338.1|WP_015584630.1|3268495_3269602_+|tRNA-2-thiouridine(34)-synthase-MnmA
MSESQKKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGHDHPRLMSRGLIAQQLHWVDREPVTGTLRCTVKTRYRQTDIPCTVNALDNERIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVIEQRLPLQS
>NZ_CP013338.1|WP_004860645.1|3267980_3268439_+|NUDIX-hydrolase
MFKPHVTVACVVHAKDKFLIVEETINGKALWNQPAGHLEADETLVQAAERELWEETGIRATPQHFIRMHQWIAPDNTPFLRFLFAIELNDTCATQPHDSDIDRCLWLSAQEILTASNLRSQLVAESIRSYQQDPRYPLSLIGAFNWPLLGGA
>NZ_CP013338.1|WP_064357162.1|3267339_3267960_+|23S-rRNA-pseudouridine(2457)-synthase-RluE
MQKTSFRKHRVERFSSQQVARQRKEHAPKRVILFNKPYDVLPQFTDEAGRSTLKDFISVSGVYAAGRLDRDSEGLLVLTNDGALQATLTQPGKRTGKIYYVQVEGLPTEDALAALRAGITLNDGPTLPAGIERVAEPAWLWPRTPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGYPTLRLIRYAMGGYTLDGLANGEWRQVG
>NZ_CP013338.1|WP_004860652.1|3265825_3267076_-|NADP-dependent-isocitrate-dehydrogenase
MESKVVVPAEGQKITLQDGKLNVPNNPIIPFIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIRDYRVAIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSAEAEKVIKFLRDEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAMEYAITNDRDSLTLVHKGNIMKFTEGAFKDWGYQLIREEFGGELIDGGPWQKVKNPNTGKEIIIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMQWFEAADLIVKGTEGAIAAKTVTYDFERLMEGAKLLKCSEFGDAIIANM
>NZ_CP013338.1|WP_077266756.1|3264648_3265449_-|MBL-fold-metallo-hydrolase
MLKMTMLVENHLSPQAVPGMQPRAGLCILLDDGDSRILFDTGPDETFIRNARLMNEPLSNLSAVVLSHGHYDHIGGVNWLNSGTRIICHPDVGRERYACVRLPGKAIPVKKLSRHLNFTGKNVLFSKGPQAVGKRFTWTGEIPVEKPVAYGITDLRTGALDYVADEGALIWRSSRGLVIITGCGHRGLENTVRHCRNITREEKVYAVIGGLHLRTASPLKLINLMKFLREIEPEKIIGCHCTGRWGRLWLRDKYRLSCGDTLFFDD
>NZ_CP013338.1|WP_064357163.1|3275988_3276492_-|transposase
MSNYRRSNIPGGTWFFTVNLRNRQSDLLTRHIDRLRTVTAAIKCKKPFLINAWVILPEHMHAIWTLPEDDTDYSGRWRDIKKTFTRELGMREVWQPRFWEHAIRNEDDYRRHMDYVYINPVKHGYVKRVIDWPYSTFHRDVSLGVYPPDWAGEVADFDAGERRQNAG
>NZ_CP013338.1|WP_004860623.1|3276624_3277854_-|peptidase-T
MDKLLERFLQYVSLDTQSKPGVRQVPSTEGQWKLLRLLQAQLEEMGLVNVTLSEKGTVMGTLPANVAGAIPPIGFISHVDTAPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALATLKAKNIPHGDIRVAFTPDEEVGKGAKHFDVAAFDARWAYTVDGGGVGELEFENFNAASVTIKIVGNNVHPGTAKGVMVNALSLAARIHAEIPADEVPETTEGYEGFYHLASMKGSVDRAEMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMHEKVMSHPHVVEIARQAMVDCDIEPQMKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAKRGV
>NZ_CP013338.1|WP_064357164.1|3278128_3279247_+|spermidine/putrescine-ABC-transporter-ATP-binding-protein-PotA
MNIQPRSLSPLVQLAGIRKSFDGKTVISDLNLTINNGEFLTLLGPSGCGKTTVLRLIAGLENVDSGRIHLEDQDITHVPAENRHVNTVFQSYALFPHMSVFENVAFGLRMQKTPAAEITPRVLDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGKIEQDGTPREIYEEPKNLFVASFIGEINLFNATVIERLDEQRVRASVEGRECNIYVNFPVKRGQRLNVLLRPEDLRVDEVHDGSDADGLIGYIRERNYKGMTLESVVELENGKMVMVSEFFNEDDPDFDHPLDQKMAINWVESWEVVLADEEHK
>NZ_CP013338.1|WP_004860619.1|3279230_3280088_+|spermidine/putrescine-ABC-transporter-permease-PotB
MKNTSKFQNVVIATIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKLVFTLDNYTRLLDPLYYDVLLHSLNMALLATLACLALGYPFAWFLARLPEKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPLRIMYTPSAVIIGLVYILLPFMVMPLYSSIEKLDRPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKSQFLNIRDWPFGAATSITLTLVMGLMLLIYWRAARLLNKKVELE
>NZ_CP013338.1|WP_004860615.1|3280084_3280870_+|spermidine/putrescine-ABC-transporter-permease-PotC
MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTTRWYSLLMNNDSLLQAAQHSLTMAVLSATFATLIGSLTAVALYRYRFRGKPFVSGMLFVVMMSPDIVMAISLLVLFMLIGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASELTILRKILLPLALPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKIYSMVKVGVSPEVNALATILLVLSLVMVIASQLIARDKTQGTLK
>NZ_CP013338.1|WP_064357165.1|3280866_3281913_+|spermidine/putrescine-ABC-transporter-substrate-binding-protein-PotD
MKKWSRHLLAAGALVMGISAAHADDSKTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYFVDKMRKEGMLQKIDKSKLTHFNNLDPQMLNKPFDPGNDYSIPYIWGATAIGVNSDAIDPKTVTSWADLWKPEYKSSLLLTDDAREVFQVALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAWVARQSGTPLEVVWPKEGGIFWMDSLAIPTNAKNVDGALKLINFLLRPEVAKQVAETIGYPTPNLAARKMLSPEVANDKSLYPDADTIAKGEWQNDVGSASTLYEEYYQKLKAGR
>NZ_CP013338.1|WP_077266777.1|3282019_3282541_+|hypothetical-protein
MMATVWLFLALLNLVVFTAFIIPRKQPAEASPLFPVAAIKLLRFMWLVPILIFGYSLSLVATISLIEWGCLAIAVIGNILMIKGKHDLGRCHTWAGYYLPGVSAIRTGIFRWLPHPMYTGIVLVILSCSMIYVTHLPAYISAMALICCLYIIIFLLFAAYRESKMLMPLAHGA
>NZ_CP013338.1|WP_064357167.1|3282565_3284203_-|long-chain-fatty-acid--CoA-ligase
MHPPMMYQDLTTRALIEHAARYHSDTGIVSVGTLGGREYSTWGEVADNARHLASAMHRLDLPAGARCGTLAWNNRRHLEIYFGISSGGWVTHTINPRLSAEHLAFIINDAADEILFFDYTFLPLICALRPQLPTVKHFVLLAPRNDEALAALDALLFFDELVAEADPAYRWPEVSEDSPASLCYTSGTTGKPKGVLNTHRSLVLHTLSGNQPDAAGISAQDTLLPVVPMFHVNAWGTPFIAAMAGARLVLPGPNLDGDSLLRLLSEEQVSVAFGVPVIWAGLLAALRKSDIRLPHFKRSFVGGSALPPSMIEVFRRDYDIALIHAWGMTETSPIGTINTPLSKHKALTQETQEKRGHGQGRIIFGIDLRVVDAQGQTLANDGESQGYLQVRGHWVAANYYGRPDTALTDDGWFDTGDIGTLDENGYLVIHDRAKDIIKSGGEWISTVELENIALAHPAIRSAAAIAAQHPRWDERPVLLCVRAEGGEIEEPELLAWYQARVPKWQLPDRILFIDALPVSATGKVLKNRLRAEFGQILMADGREAG
>NZ_CP013338.1|WP_048024997.1|3284507_3285227_-|response-regulator-transcription-factor
MKPKKVLIIEDDENIAELLQLHLCEEGYEISHAAEGVGGLAMVRQGGWDALILDLMLPGIDGLEICRHARTMASYMPIVIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEAMTQNLMQDAGMLHIDRLAIDPLAREARLRDLPLDLTPREFDLLWFFARHPDKVFSRISLLNQVWGYQHEGYEHTVNTHINRLRMKIEDNPAEPEFILTVWGKGYKFTAPHPEPGR
>NZ_CP013338.1|WP_064357789.1|3285371_3285983_+|cytochrome-B
MNSPSGQVKPAIVHPLWLRICHWVNALSILIMVTSGWRIYNASPLFNFDIPDALTLGGWLAGALQWHFSAMWLFALNGVFYLLMNVVSGRLKKQFWPLSPRGVIHDFISALRGRLTHDNPGHYNYVQKLAYLFVMLDSIILALSGLVIWKSVQFPLLRTLLGGYDNARVIHFLAMSALMGFVVIHLLMVLLVPKTLLAMLRGR

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Crispr_ID: NZ_CP013338_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013338_2

3729665-3729782

Orphan

Consensus_repeat	Method
CCCCTTTGTAGCCCCGGTAAGCGCAGCGCCACCGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013338_2

>merge|NZ_CP013338|2|3729665-3729782|CRISPRCasFinder
CCCCTTTGTAGCCCCGGTAAGCGCAGCGCCACCGGGGGAGCCTCCAGGGGCGCGAATTACGCCCACCCGGGCGACCTGACAACCCCTTGTAGCCCCGGTAAGCGCAGCGCCACCGGGG

>NZ_CP013338|2|2|3729665-3729782|CRISPRCasFinder
CCCCTTTGTAGCCCCGGTAAGCGCAGCGCCACCGGGG	GAGCCTCCAGGGGCGCGAATTACGCCCACCCGGGCGACCTGACA
ACCCCTTGTAGCCCCGGTAAGCGCAGCGCCACCGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013338.1\|WP_004859765.1\|3720542_3722564_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP013338.1\|WP_004859758.1\|3729064_3729541_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP013338.1\|WP_015584856.1\|3737977_3739261_+\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP013338.1\|WP_071824637.1\|3740092_3740644_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237123
NZ_CP013338.1\|WP_004859764.1\|3723301_3724024_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274567
NZ_CP013338.1\|WP_004859759.1\|3727699_3728989_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP013338.1\|WP_064357235.1\|3740640_3741444_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227949
NZ_CP013338.1\|WP_004859768.1\|3718539_3719211_+\|two-component-system-response-regulator-PmrA	unknown	unknown	gnl\|CDD\|182612
NZ_CP013338.1\|WP_064357233.1\|3739554_3740106_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP013338.1\|WP_004859763.1\|3723965_3724688_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP013338.1\|WP_004859767.1\|3719215_3720307_+\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751
NZ_CP013338.1\|WP_064357797.1\|3736392_3737610_-\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP013338.1\|WP_004859756.1\|3731294_3732827_-\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP013338.1\|WP_004859762.1\|3724680_3725436_-\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP013338.1\|WP_032716926.1\|3732828_3734514_-\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP013338.1\|WP_064357794.1\|3734657_3735383_-\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NZ_CP013338.1\|WP_004859760.1\|3726573_3727614_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP013338.1\|WP_064357232.1\|3725419_3726577_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP013338.1\|WP_004859757.1\|3729788_3731195_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP013338.1\|WP_004859753.1\|3735439_3736396_-\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974

Protein	Function_ID	Function_description	E-value
NZ_CP013338.1\|WP_004859765.1\|3720542_3722564_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP013338.1\|WP_004859758.1\|3729064_3729541_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	6.94382e-112
NZ_CP013338.1\|WP_015584856.1\|3737977_3739261_+\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP013338.1\|WP_071824637.1\|3740092_3740644_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237123	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.	4.13795e-28
NZ_CP013338.1\|WP_004859764.1\|3723301_3724024_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	3.70969e-77
NZ_CP013338.1\|WP_004859759.1\|3727699_3728989_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP013338.1\|WP_064357235.1\|3740640_3741444_+\|hypothetical-protein	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	0.000247784
NZ_CP013338.1\|WP_004859768.1\|3718539_3719211_+\|two-component-system-response-regulator-PmrA	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	7.9202e-147
NZ_CP013338.1\|WP_064357233.1\|3739554_3740106_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.08547e-11
NZ_CP013338.1\|WP_004859763.1\|3723965_3724688_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	5.17419e-104
NZ_CP013338.1\|WP_004859767.1\|3719215_3720307_+\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NZ_CP013338.1\|WP_064357797.1\|3736392_3737610_-\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP013338.1\|WP_004859756.1\|3731294_3732827_-\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP013338.1\|WP_004859762.1\|3724680_3725436_-\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	5.73229e-149
NZ_CP013338.1\|WP_032716926.1\|3732828_3734514_-\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP013338.1\|WP_064357794.1\|3734657_3735383_-\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.13801e-168
NZ_CP013338.1\|WP_004859760.1\|3726573_3727614_-\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP013338.1\|WP_064357232.1\|3725419_3726577_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP013338.1\|WP_004859757.1\|3729788_3731195_-\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP013338.1\|WP_004859753.1\|3735439_3736396_-\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	1.30393e-171

>NZ_CP013338.1|WP_004859758.1|3729064_3729541_+|kinase-inhibitor
MNLISHDLQDGGKLPHRHVFNGMGYDGDNISPHLAWDEVPDGTKSFVVTCYDPDAPTGSGWWHWLVANLPAETRELPQGAGSGLAPLPASAIQTRTDFGLPGYGGAAPPKGESHRYIFTVHALDVEKIEVDEGASGAMVGFNVHFHSLGSASITALFI
>NZ_CP013338.1|WP_004859759.1|3727699_3728989_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTTDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLIDGMSSWWAAIHGYNHPRLNAAMKAQIDQMSHVMFGGITHPSAVALCRQLVAMTPESLECVFLADSGSVAVEVAMKMALQYWQAKGAARRRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWQGYLPDNLFAPAPQSRFGGEWDERDMVPFARLMAAHRDEIAAVILEPVVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEHADIAPDILCLGKALTGGTMTLSATLTTRSVAETISDGEAGCFMHGPTFMGNPLACAVATESLRLLESGEWQGQVAAIEAQLNVELAPARESPLVADVRVLGAIGVVETCRPVNMAALQRFFVEQGVWIRPFGRLIYLMPPYVITPRQLTRLTQAVNAAVLNETFFRE
>NZ_CP013338.1|WP_004859760.1|3726573_3727614_-|biotin-synthase-BioB
MAHHARWTMSQVTELFNKPLLDLLFEAQQTHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLESERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDTQAQRLAGAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGETEKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLEGDNEQQQRLEHALNNPDTEEYYNAAVL
>NZ_CP013338.1|WP_064357232.1|3725419_3726577_-|8-amino-7-oxononanoate-synthase
MSWQQRIDQALSERRQADAFRRRQPVAQGAGRWLIREDRRWLNFSSNDYLGLSQHPQIIAAWQQGAARYGVGSGGSGHVSGYSEAHRELEESLADWLGYPRALLFISGFAANQALITALLARDDRIVADRLSHASLLEAASLSPAQLRRFAHNDVQQLSELLGKPLAGQQLVVTEGVFSMDGDSAPLRDIAPTTRAAGGWLLVDDAHGIGVVGDEGRGSCHAQNVRPELLVVTFGKAFGVSGAAILCDEALADYLLQFARHLIYSTAMPPAQAVALSAALAVIRSDDGRQRREKLASRVAQFRDGMADFPGELSASTSAIQPLIVGDNTRALQLAARLREQGCWATAIRPPTVPAGSARLRLTLTAAHEPTDITRLLEVLHGGGE
>NZ_CP013338.1|WP_004859762.1|3724680_3725436_-|malonyl-ACP-O-methyltransferase-BioC
MAAVNKRAVAAAFGRAATHYSQHDALQRYSAELLLRQLHGRPFSAVLDAGCGPGSMSRYWREVGSHVTALDLSVEMLAQAQRNACAHRYLAGDIESLPLADACVDLAWSNLAVQWCESLSGALDELCRVVRPGGRVAFTTLLADSLPELNQAWRAIDTHPHANRFLSERAVREALAGRRAVGEVHAVSLPFADALSAMRSLKGIGATHLHQGRSAAPLSRGKLRQLQLAWPKQQGQCPLTYHLFTGVIERD
>NZ_CP013338.1|WP_004859763.1|3723965_3724688_-|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTVTSCALLQAAKLSGLKCAGYKPVASGSELTAHGLRNDDALALQRNSGVALNYAQVNPFTFAEPTSPHIVSAEEGRPITGDALSAGLRELETLAEWVLVEGAGGWFTPLSATLSFADWVRDERLPVILVVGIKLGCINHALLTAQAVRQAGLPLVGWIANDIQPPGKRHAEYLATLNDRLAAPLLGEIPWLADASRREDLGQYLDLSALDRASSTVPAAVHPAG
>NZ_CP013338.1|WP_004859764.1|3723301_3724024_+|ATP-binding-cassette-domain-containing-protein
MLSLRAVNQYYGNQHTLWNVDLELQPGECTCVMGLQGMGKTTLVNCITGHLPVASGSMTWHDIGSPPCDITPLSAHSRSIIGIGYVPQDRRIFSQLSVEENLHIALAAGGNPGGAVKGEIYDFFPELYARRQHKAAMLSEDDQYQLALARALVVRPRLLILDEPSRGSGQHFVHKLGDLLVRLNRDIGLTVLLAEQHLPFIRRVADRFCLLHRGRNVAQGRVIQLDEPLLAQWMTPDPAR
>NZ_CP013338.1|WP_004859765.1|3720542_3722564_-|excinuclease-ABC-subunit-B
MSKTFTLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTTGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGQVESTIPRYTIYPKTHYVTPRERIVQAMEEIKVELAERRKVLLENNKLLEEQRLSQRTQFDLEMMNELGYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGPYELDKSGDEVVDQVVRPTGLLDPLIEVRPVATQVDDLLSEIRIRVAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNINGKAILYGDKITASMAKAISETERRREKQQRYNEEHGITPQGLNKKVVDILQLGSNLAKTKAKGRGKSRSPVEADTPEVLLTPKALQQRIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP013338.1|WP_004859767.1|3719215_3720307_+|two-component-system-sensor-histidine-kinase-PmrB
MALFASETWTMRHRLLLTIGTILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLIPSLLIVGLALYISLVAVRKITRPLSNLQTELESRTPDNLQPITLTESVPEVTAVTTAINQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELMAKVHHVEVGQLIQRLDQMTNSISQLLQLARVGQSFSAGSYQRVLLKEDVVEPIRGELESMLEQRQQTLALALPEGDDAKDVVVSGDATLLRVVLRNLVENAHRYSPAGSKIKIAIQAGTTPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIVQLHDAQFFLHNRQPGPGVRGWIQFPKPSR
>NZ_CP013338.1|WP_004859768.1|3718539_3719211_+|two-component-system-response-regulator-PmrA
MKILVIEDDALLLQGLILAMQSEGYVCDGVATAHEAALSLASNHYSLIVLDLGLPDEDGLHFLMRMRREKFSQPVLILTARDTVEDRISGLDTGADDYLVKPFALEELNARIRALLRRHNNQGDNEMAVGNLRLNMTRRLVWLGGEALDLTPKEYALLSRLMMKAGSPVHREILYNDIYSWDNEPATNTLEVHIHNLREKVGKARIRTVRGFGYMLVNNSGTE
>NZ_CP013338.1|WP_004859757.1|3729788_3731195_-|amino-acid-permease
MQQQPQSPQKPHLLRGLNARHIRFIALGSAIGTGLFYGSAAAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWVLSIIFFIGAMNLCHVRIFGEMEFWLSLIKVVAIIAMIVAGGSIIFFGFGHAFPATGLENLWSHGGFAPNGWQGIVASLGIVMFAFGGVEIIGVTAAEAQNPKKVIPQAINTIPLRIVLFYVCTLAILMAIFPWNSFGEQGSPFVLIFSGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMAKEGMAPKSFQRIASNGVPWMTVVVMGVALLVAVVLNYLMPEQVFVLIASLAAFATVWVWLMILLAHFAMRRGLSAEERRQIAFPVPFWPVAPLLTLLFMGLVIAVLGMVEETRIALIAGLVWLGLLTIIWYAKVKKTVRMPVAEQSSSS
>NZ_CP013338.1|WP_004859756.1|3731294_3732827_-|histidine-ammonia-lyase
MKNLTLIPGQLSLAQLREVFQHPLTITLDEQAFAAINESVACVNAILAEGRTAYGINTGFGLLASTRISTDDLENLQRSLVLSHAAGIGEPLDDAMARLIMVLKINSLSRGFSGIRLSVIQALIQLVNKGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVDGEWMPALQALKKVGLEPITLAAKEGLALLNGTQASTAFALRGLFDAEDLFASAVVCGALTTEAALGSRRPFDSRIHEARGQRGQIDAAALYRHVLTDSSEISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLIEANAVSDNPLVFAAENEVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALAHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAVQGLDMREGLASSPLLEEARHLLRERVSHYTQDRFFAPDIDNAIELLAARHLTRLLPAVLPGQI
>NZ_CP013338.1|WP_032716926.1|3732828_3734514_-|urocanate-hydratase
MSQSKYRQQDVRAPRGTTLNARSWLTEAPLRMLMNNLDPDVAENPHELVVYGGIGRAARNWECYDAIVKALKNLESDETLLVQSGKPVGVFKTHENSPRVLIANSNLVPHWATWEHFNELDAKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHYQGSLKGRWVLTAGLGGMGGAQPLAATLAGACSLNIECQQSRIDFRLRTRYVDEQATSLDDALARIKKYTAEGRAISIALCGNAADIVPEMVKRGVRPDMVTDQTSAHDPLHGYLPKGWTWEEYQAKAESDPQGTILAAKRSMADHVQAMLAFNEMGVPTFDYGNNIRQMAQEMGVDNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETESMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYDIAIECAAEQGLNLPMVAATQGQR
>NZ_CP013338.1|WP_064357794.1|3734657_3735383_-|histidine-utilization-repressor
MFSQQSRTAPAPFYEKVKQAISEKIQRGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIADEIISRRHQHRCEVLLLEETEADLIQSAALNVAEGTRIFHSLMVHFENDIPVQIEDRCVNAAVVPAYLHQDYTVTTPHDYLSLIAPLTEGEHIVEAVQASAKECELLQIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGHFTS
>NZ_CP013338.1|WP_004859753.1|3735439_3736396_-|formimidoylglutamase
MTLWQPTPADIWQGRDDSAEAANALRLFQTIVRAERFAPQALPGDIALLGFACDEGVRRNRGRTGAEKGPETLRRALANMASHSGHERCVDMGTIGVAGEGLETAQQALREAVAACLRAGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRIAEQASSGTPFRQLALECDAQQRGFHYTCIGASRAANTQALWDEAARREVRVVEDLDVLQAYDQQVAPEIARNIALYDRLYLTIDLDVLPAREMPAVSAPAALGIPLAILLRIVEPLCRSGKLQAVDLVEFNPQFDIDSQGARAAARLAWQIAHWWR
>NZ_CP013338.1|WP_064357797.1|3736392_3737610_-|imidazolonepropionase
MTEATSDRVIWRNARLATLNPDDSQPYGLRDGHALLVRNGRIEAIVPENDAPAGPSIDLGGRLLTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISANGGGINSTVRATRESSEAQLLALAQQRLERLLREGVTTLEIKSGYGLDLENERKMLRVARQLAQNNAVELSPTLLSAHATPPEYKDRPDAYITLVCETLLPTLWEEGLFESVDVFCENVGFSPQQTERVFQAAQACGIPVRGHVEQLSSLGGAQLVSRYQGLSADHIEYLTEEGVAAMSRSATVAVLLPGAFYFLNETRKPPVELLRQYQVPMAVATDYNPGTSPFASLHLAMNMACVKFGLTPQEAWAGVTRHAAQALGRQNSHGQLAAGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVRGEMQ
>NZ_CP013338.1|WP_015584856.1|3737977_3739261_+|putative-acyl-CoA-thioester-hydrolase
MNTFSVSRLTLALAFGVTLSACSSTPADQQPSTQTAPGTVSRPVLTADEAKNFTPASYFQSLDPNAAAWTPAAISIPSQPDFVVGPAGAQGVTHTTIQAAVDAAIARHSDRRQFIAIMPGEYTGTVYVPAAPGALTLYGTGEKPLDVKISQAIDSEMDVNTWRHLVNPAGKYMPGKPAWYMFDSCQSKRAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINNVNILGRQNTFFVTNSGVQNRLQNDRQTRTLVSNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLAVNSRFTASGDGVAQLGRSLDVDSATSGQVVIRDSAINEGFNVAKPWADAAISSRPFSGNTGAVDAKGVPQRNLNDSSFNRMWEYNNRGVGSVVVAEPKQ
>NZ_CP013338.1|WP_064357233.1|3739554_3740106_+|tetratricopeptide-repeat-protein
MNTLISSILPASRRLMVPALLCLLYASPSFAMGDNSTQSKTPDCPSGQVYDSVSKQCVPDKTSSLSDQDKTNYAYHLAKKGQYQAALNLLDSLKNGNTAEAWNYRGYATRKLGRTDEGIGYYQRALALEPNYAKAREYLGEAWMVKGRRDLAQEQLKVISGICGQSCEEYRDLQAAINGHPES
>NZ_CP013338.1|WP_071824637.1|3740092_3740644_+|sigma-70-family-RNA-polymerase-sigma-factor
MRNPEAHREGKKITTSDVRSQLAAHLARLWRYGLILSHNRDIAEELVQSTCVRALERSAQFTPGTRIDRWLFTILHSIWISELRARHVRMGQGFVENDPQLATDDREMNEDHRQYQQLMRRVSALPEAQRNAVFLVYVEGFTYQEAADTLSVPIGTVMSRLAAARSTLAKTPATAAAAREKRL
>NZ_CP013338.1|WP_064357235.1|3740640_3741444_+|hypothetical-protein
MKSSFFTPPYGDEAIIAWLDGEMSAPDALRFEAAFREDRQLAARTAELKSIPRNYQQAFAPLLEQAPVARMQSRLDAHLAAMPAPDSAAPPPAFSRRAMIAASLAFLLIGSGLGYMARPAPGEPDESENIRDLEARYMSLYSAETLLDMDSSPAILQRGLTRTAEDIGLALNPQQLALPGAELKMVRILRYERTTIAQIAWIHAAYGPMALCISAASPQNETRIVAERRHDMNLAWWRANGYQFVLIGRNPRAQLHDNARKLQDLLS

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Crispr_ID: NZ_CP013338_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013338_3

3943864-3943989

Orphan

Consensus_repeat	Method
CGGGTAGCCCGGATAAGGCGCTGGCGCCGCTATCCGGGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013338_3

>merge|NZ_CP013338|3|3943864-3943989|CRISPRCasFinder
CGGGTAGCCCGGATAAGGCGCTGGCGCCGCTATCCGGGAAACTCTCGGGTGGCGCTGCGCTTACCGGGGCTACGGGGTCGTGCGGCCGGGTAGCCCGGATAAGGCGCTGGCGCCGCTATCCGGGAA

>NZ_CP013338|3|3|3943864-3943989|CRISPRCasFinder
CGGGTAGCCCGGATAAGGCGCTGGCGCCGCTATCCGGGAA	ACTCTCGGGTGGCGCTGCGCTTACCGGGGCTACGGGGTCGTGCGGC
CGGGTAGCCCGGATAAGGCGCTGGCGCCGCTATCCGGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013338.1\|WP_004859240.1\|3950249_3951716_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP013338.1\|WP_004859252.1\|3947041_3947803_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP013338.1\|WP_004859293.1\|3931285_3933319_-\|choline-transporter	unknown	unknown	gnl\|CDD\|236635
NZ_CP013338.1\|WP_015584937.1\|3935539_3937222_+\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_CP013338.1\|WP_004859275.1\|3938770_3940339_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173877
NZ_CP013338.1\|WP_004859243.1\|3949165_3950017_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270343
NZ_CP013338.1\|WP_004859237.1\|3951970_3953239_-\|Zn-dependent-hydrolase	unknown	unknown	gnl\|CDD\|237250
NZ_CP013338.1\|WP_054829222.1\|3954443_3955454_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP013338.1\|WP_032716847.1\|3934052_3935525_+\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
NZ_CP013338.1\|WP_015584944.1\|3953228_3954413_-\|amidase	unknown	unknown	gnl\|CDD\|181375
NZ_CP013338.1\|WP_015584941.1\|3948475_3949117_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP013338.1\|WP_004859289.1\|3933447_3934041_+\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115
NZ_CP013338.1\|WP_004859268.1\|3941453_3942287_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP013338.1\|WP_004859262.1\|3943102_3943810_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224049
NZ_CP013338.1\|WP_064357286.1\|3942279_3943116_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP013338.1\|WP_004859277.1\|3937862_3938558_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP013338.1\|WP_004859271.1\|3940440_3941454_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP013338.1\|WP_004859258.1\|3943999_3945337_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235687
NZ_CP013338.1\|WP_004859249.1\|3947795_3948461_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP013338.1\|WP_004859254.1\|3945517_3946282_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187604

Protein	Function_ID	Function_description	E-value
NZ_CP013338.1\|WP_004859240.1\|3950249_3951716_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.66333e-106
NZ_CP013338.1\|WP_004859252.1\|3947041_3947803_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.89905e-139
NZ_CP013338.1\|WP_004859293.1\|3931285_3933319_-\|choline-transporter	gnl\|CDD\|236635	PRK09928, PRK09928, choline transport protein BetT; Provisional.	0
NZ_CP013338.1\|WP_015584937.1\|3935539_3937222_+\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP013338.1\|WP_004859275.1\|3938770_3940339_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173877	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP013338.1\|WP_004859243.1\|3949165_3950017_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270343	cd13625, PBP2_AA_binding_like_1, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold. This putative amino acid-binding protein belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.0611e-111
NZ_CP013338.1\|WP_004859237.1\|3951970_3953239_-\|Zn-dependent-hydrolase	gnl\|CDD\|237250	PRK12893, PRK12893, Zn-dependent hydrolase.	0
NZ_CP013338.1\|WP_054829222.1\|3954443_3955454_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.12774e-157
NZ_CP013338.1\|WP_032716847.1\|3934052_3935525_+\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
NZ_CP013338.1\|WP_015584944.1\|3953228_3954413_-\|amidase	gnl\|CDD\|181375	PRK08310, PRK08310, amidase; Provisional.	9.3089e-171
NZ_CP013338.1\|WP_015584941.1\|3948475_3949117_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.94662e-54
NZ_CP013338.1\|WP_004859289.1\|3933447_3934041_+\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	2.91342e-106
NZ_CP013338.1\|WP_004859268.1\|3941453_3942287_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.08894e-94
NZ_CP013338.1\|WP_004859262.1\|3943102_3943810_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224049	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.11016e-102
NZ_CP013338.1\|WP_064357286.1\|3942279_3943116_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.17612e-104
NZ_CP013338.1\|WP_004859277.1\|3937862_3938558_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	6.36031e-25
NZ_CP013338.1\|WP_004859271.1\|3940440_3941454_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.18429e-105
NZ_CP013338.1\|WP_004859258.1\|3943999_3945337_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235687	PRK06062, PRK06062, hypothetical protein; Provisional.	0
NZ_CP013338.1\|WP_004859249.1\|3947795_3948461_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.62035e-42
NZ_CP013338.1\|WP_004859254.1\|3945517_3946282_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.05951e-123

>NZ_CP013338.1|WP_004859262.1|3943102_3943810_+|ABC-transporter-ATP-binding-protein
MAVVNLDALQVIFAEKTAVSAASFSVEAGETFSLIGASGCGKSTILRVLAGLQREWRGGVQLFGKAIAPGVRFQGELRRNVQMVFQDPYASLHPNHTLWRTLAEPLKIHGLDAIRQRVDTALEQVGLPADAARRYPHQLSGGQRQRVAIARALLLRPQILLLDEPTSALDMSVQAEILNLLNRLKQEHGMTYLLVSHDADVIAHMSDRAAFMAEGVIQRFFDREALVKGEHRMAG
>NZ_CP013338.1|WP_064357286.1|3942279_3943116_+|ABC-transporter-ATP-binding-protein
MTDTRLTVQGLSIDYPSARVVNNVSFTLGNERLALVGESGSGKSMTARALMGLVRRPGVVSAETLNVLGHDLLTLNDRHWRALRGNDIAMVLQDPRYALNPVQTIQAQLEEALTLHQRLSRRARQEAVKAAVAAVGLDLPVLSRYPGELSGGMGQRVMIAIALLNNPKVLIADEPTSALDSRLRNQILELLVEQCQQRQMAMLLISHDLPLVAQHCHRVLVMYQGAQVDEMPARELPQATHPYTRTLWTCRPDASTYGQMLPTLDRTLDFTEAAHGSR
>NZ_CP013338.1|WP_004859268.1|3941453_3942287_+|ABC-transporter-permease
MPAYLFLRRLRRSPAAFFGLIVIALLLLVALFAPWLAPLDPNWQDAAARLQSPDARHWLGTDSYGRDLLSRLIYGARPALGLVALVTLITLPAGLLVGILSGYYGGWLERILMRFTDVVMSMPRLILAFAFVAMLGPGLVNGALALALTTWPAYARQARSEIQRLRHSDYLAAAEMMGIRGWRLLTGHILPLCLPSAIVRLALDLAGIILAAAGLGFLGLGARPPMAEWGAMIADGMQVIFDQWWIAAAPGAVILIASLAFNLLGDGLRDVLEPQHD
>NZ_CP013338.1|WP_004859271.1|3940440_3941454_+|ABC-transporter-permease
MPHLSTRVLQGLLTLLLTLFGLLLVTFALSAFSPVDRVLQIVGDHASQSTYDQVRHQLGLDRPLPVQFWHYLVNLAHGDLGTASSTGQPVLHDLLATFPATLELATLALIVGALFGVIAGVLCARYAGSPWDLAVRTLTLIGNSVPIFWLGLLMLALFYAKLQWTPGPGRLDDIYQYTVEPRTGFVLIDTWLSGDKEAFKNAIGHLLLPVLLLGYYSLASITRLTRSACLSEMNKEYILLARAKGASEMTILLRHVLPNIRGTLLTVIALAWTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAIMGGTLLIGASFVFINNLTDLLVRLTDPRVR
>NZ_CP013338.1|WP_004859275.1|3938770_3940339_+|ABC-transporter-substrate-binding-protein
MTKKLLSLLVLTALSAAVHAATPPSTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRLVQPDRDNPEKITPILAASWQADPAAKTLTIKLKPDAKFASGNPLRPEDIIFSYTRAVTLNKSPAFILNVLGWQPDNIASQLKKVDDHTLQLHWTADVSPAVALNILSTPIASIVDEKLVAPNVKDNDFGNSWLKMHSAGSGAFKMRVYQPHQAIVLEANNSSPTGAPKLKSIIIKNVPDPASRRLLIQQGDADIARDLGADQIAALQGKPGVNVLSIPSAEQNYLAFNTGNSANPLLKNPALWEAARWLVDYDGITKDLLKGQYFVHQSFLPVGLPGALDNNPFKFDPEKAKAILAKAGIKDAHFTLDVENKPPFITIAQSMQASFAQGGVKIDLLPAAGSQVYARVRAKQHQAAIRLWIPDYFDAHSNASAFAWNDGKSSTVAGLNGWQIPQLNKETQAAVAEADPAKRLDLYKKMQEELQRSSPYVFVDQGKTQIVVRDNVKGYQQGLNADMVWYDNVTK
>NZ_CP013338.1|WP_004859277.1|3937862_3938558_-|GNAT-family-N-acetyltransferase
MPEINQYGQVVNDVVADWQGARILKRTPLSGRFCRLEPLEVQRHAADLFAAYALGDESDWTWLASTCPASVEATTHWVAGKVNDDALVPFAVIDLQTERAVGLVSYMAIDRAMGTVEIGHVTWSRKMKNTPLGTEAVWLLLKNAFGQGYRRLEWKCDSMNIASRRAAERLGFTWEGCLRQKMVRKGRTRDSDQLSIIDSEWAARDAALRAWLAAENFDSEGRQLKRLEDFR
>NZ_CP013338.1|WP_015584937.1|3935539_3937222_+|choline-dehydrogenase
MQFDYIIIGAGSAGNVLATRLTEDPHTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYETEPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWATAPGLEQWSYLDCLPYYRKAETRDIGANDYHGGDGPVSVTTPKQNNNPLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQARARPNLTIRTHALTDHIIFAGKRAVGVEWLEGDSTAPSKATASKEVLLCAGAIASPQILQRSGVGDPELLRQFDIPLVHALPGVGENLQDHLEMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGIGASNQFEAGGFIRSREAFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRLKSRDPHEHPAILFNYMSSEQDWQEFRDAIRITRDIMNQPALDKYRGREISPGLACQSDAELDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADAIRGRAPLPRSTARYYVANGAPVRRQAAVKG
>NZ_CP013338.1|WP_032716847.1|3934052_3935525_+|betaine-aldehyde-dehydrogenase
MSRMAEQQLYIHGGYVPATSGKTFETLNPANGEVLATVQAAGRDDVDRAVKSAQQGQKIWAAMSAMARSRILRKAVDILRERNDELARLETLDTGKPLSETAHVDIVTGADVLEYYAGLIPALEGSQIPLRDSSFIYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYREAGLPDGVFNVLPGIGAETGQYLTEHPDIAKISFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVCDDADLDLAADIAMMANFYSSGQVCTNGTRVFIPTRAKAAFEEKILARVARIRPGDPFEETTNFGPLVSFPHRENVLRYIASGKQEGARLLCGGGVLQGDDFASGAWVAPTVFSDCRDDMTIVREEIFGPVMSILTYDDEAEVIRRANATEYGLAAGVVTANLNRAHRIIHQLEAGICWINSWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSIQVEMGQFQSIF
>NZ_CP013338.1|WP_004859289.1|3933447_3934041_+|transcriptional-regulator-BetI
MPKLGMQPIRQRQLIDATLEAINAVGMHDATIAQIARRAGVSTGIISHYFKDKNGLLEATMRDITGQLRLAVLSRLHALPGASAERRLRAIVAGNFDDSQISSAAMKAWLAFWASSMHQPMLYRLQQVCSRRLLSNIVYEFQRELPRQQAQEAGYGLAALIDGLWLRAALSGKPLDKARAETLADHFISQYLPPTSQ
>NZ_CP013338.1|WP_004859293.1|3931285_3933319_-|choline-transporter
MTDLSPSREKDKINPVVFYTSAGLILLFSLMTIFFSDFSAAWIGRTLNWVSTTFGWYYLLAATLYIVFVVCIACSRFGSVKLGPEHSKPEFSMLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTMEAARQSMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKKIDGPIGHSVDIAAVVGTIFGIATTLGIGVVQLNYGLNVLFDIPDSLGAKAALIVLSVIIATISVTSGVDKGIRILSELNVVLALGLILFILFMGDTEFLMNALVLNVGDYVNRFMGMTLNSFAFDRPVEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLSVFGNSALYEIIHGNVAFAEEAMAHPERGFYNLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRIFWSVAIGLLTIGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKSLKVEDYRRESASRDTAPRPLGVQDRLSWKKRLSRLMNYPGTRYTRQMMETVCYPAMEEVAQELKLRGAYVDLKSLPPEEGDNLGHLDLLVHMGDEQNFVYQIWPQQYSIPGFTYRARSGKSTYYRLETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNFIHLHREAPGNSVMFPGM
>NZ_CP013338.1|WP_004859258.1|3943999_3945337_-|aspartate-aminotransferase-family-protein
MKLAIQNDVTVSNDDVRQLDRAYVFHSWSVQGNINPLVIAGARGCELWDYEGKTYLDFSSQLVNVNIGYQHPRVLAAMKAQLEELVTIAPATANLARGEAAKRIVELAPEGFSKVFFTNAGADANENAIRMARLYTGRDKVLSAYRSYHGNTGSAIAATGDWRRVPNEYSRGHVHFFNPYLYRSEFNAVTEEEECQRALAHLRRIIECEGPGAIAAILLESIPGTAGILVPPDGYMQGVRALADEFGIVLILDEVMAGFGRTGSWFAFEQDGVVPDLVTFAKGVNAGYVPAGGVLISDPIARYFDDHFFAGGLTYSGHPLAMAAIVATIDAMKEENIVENAAQMGNHVLRPGLEALAEKHAIIGHVRGRGLFQALELVSDREAKTPLTAADMAAIKGALTEAGLLAFVVENRIHVVPPCTISAEQIAKGLAIFDSVFARFATLAK
>NZ_CP013338.1|WP_004859254.1|3945517_3946282_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTTNNVVFITGATSGFGEAAAQVFAEAGWSLVLSGRRLARLQKLYDRLSLLVPVHIIELDVRDSEAVAAAVAELPAAFADIKTLINNAGLALAPQPAQKVDLQDWKTMIDTNVTGLVNVTHALLPTLIQHGAGASIINVGSIAGQWPYPGSHVYGASKAFVKQFSYNLRCDLLGTGVRVTDLAPGIAETEFTLVRTKGDQAASDNLYRGTTPLSAQDIAGQMFYIATLPDHMNINRVEVMPVRQAWQPFAIDRD
>NZ_CP013338.1|WP_004859252.1|3947041_3947803_-|amino-acid-ABC-transporter-ATP-binding-protein
MPDTTAVSIKNVSKQFDNIEVLRDINLTVEKGSVVSILGSSGSGKSTLLRCMNWLEQPDRGEIHIGGQRLGIDEQNGKAMSHRQLSKIRERVGMVFQSFNLWPHLTVQQNVSEALLHVKGMKRDEASAIAIQQLEKVGMAHKADAWPITLSGGQKQRVAIARSLAMSPEVILFDEPTSALDPELVNEVLGVMKALAAEGYTMVVVTHEMDFARQVSDEVVFLEKGLLIEKAPPEKFFTNPDSERVRQFLQSRR
>NZ_CP013338.1|WP_004859249.1|3947795_3948461_-|amino-acid-ABC-transporter-permease
MNQWAIIWSARDSFIAGLIATLELFILAAVVGLAIGIVLCYLTEYQKRWLNRVIIGFVSLMRAIPFLILAYLLYYGLPEVGISMDAWSAGLVALMIYHGAYFFEILRSQRRVFSAGYIEAAVAQGFSRYQIYRRIILPNIVSSALPLLGNQLIICLKDTAFLSIITVQEITAAANSVQATWFIPFNAFIVAIALYWAISILLELLIKRLSALGARRGMSHA
>NZ_CP013338.1|WP_015584941.1|3948475_3949117_-|amino-acid-ABC-transporter-permease
MDVISWQLLIEGAWTTLWISAIAIAFGVVIGLLIALVRMLRLPIIDQLLVVYISLARATPLVTLVLFLFLSLPTVGINLDKNVAAIVALTLNTSAFNAEIWRNAFRTFPREQREAAESVGMRRWTYFRYIMLPQMWIESLPALVNEMSFLIKGSPAIAVIGVVDLTRVTNRISSVTYEPLSPILAAGLLYVVIIGMLLKLQGLAERKAKRLAR
>NZ_CP013338.1|WP_004859243.1|3949165_3950017_-|transporter-substrate-binding-domain-containing-protein
MNKSLGSMCLGAVMALAFSYHAAAADLPEIEKSGTLKVATEDDYAPFNFMSNGQADGFNKDMLEELRKYAKFHVDQSILPWTGLLAAVSTGQYDMALTGAVITDDRLKVFDFTPPWASAQHYFVKRAGDNSLNTIADLSGKKVGLQAGSALLARLPELKAMLEKTGGKLGPVVEYPSYPEAYADLANKRLDYVINVVISVNDLAKAKPKVFAKGLAVSGPGYMAWPIPKNSPQLLAYMTKFINHMRETGKLAELQKKWFGETYDNLPTEAITSPEQFHKLAGL
>NZ_CP013338.1|WP_004859240.1|3950249_3951716_+|PLP-dependent-aminotransferase-family-protein
MIRHLLHVEFDQRRGLQEQVRETLVNAILSGIFSADTPLPSCRQLASQLRVSRNTTALVFESLVSEGYLISRPRSGYYLHPDYQHSAATVAVQDAPDDERAAPRWGARLQITPSQQESILKPAGWMNYRYPFIYGQPDTRQFPLTTWRSAANWLHGGVRDPAWVVDHIDQDVPMLIEQIRTRVLPKRGIVAAADEILITLGSQNALYLLTRLLMSSTTRVGVENPCFREAINTFLLADADIVPHPVDEEGIVLDDAPCDYYYVTPGHQVPTGVAMSQVRRGQLLEHAARHDAVIVEDDYDSESNFMLNPLPALKASDRSGRVIYVSSLSKALSPGLRLGFMVADPDLIDEARALRRLIYRHPPTNIQYQMAHFLAQGHYETHLRRYHFDSAQRWERLNNALHRYLPECRIIPGSEHANAFWLATPKQINTQQLTWRAAHAGVLIEPGARHFLNANPPENFFRMGFHAINPDAIAPGVEVLCHQLAQLG
>NZ_CP013338.1|WP_004859237.1|3951970_3953239_-|Zn-dependent-hydrolase
MSSEVLFTPVAGATGWRINGERLWDSLMALAEIGATPKGGCCRLTLTDLDRQGRDVVIGWAQEAGMSVTVDKIGNVFMRREGRNPLLPPIVSGSHIDTQPTGGKFDGNYGVLAALEVVRTLNDLDIETEAPIEVVFWTNEEGSRFVPVMMGSGVFAGVFPLETIYAAQDAQGKTVGEELARIGYVGSQTPGDHPIGAYFEAHIEQGPILEDEEKIIGVVQGVLGIRWYDCVVTGQASHAGPTPMRLRQDALQVATRIMQEVVAIAGRSEEGRGTVGMVQVYPNSRNVVPGEVTFSIDMRNISDAAVDEMDRQLRAFITRVQQESGLAVTLQEVSHYPAAPFHPDCQQAIADAAARLGYPAREIVSGAGHDAVYMSYLAPTGMIFIPCKDGISHNEIEYASPGHVTAGANVLLQVMLQYAQVA
>NZ_CP013338.1|WP_015584944.1|3953228_3954413_-|amidase
MQDDNHAFMPYPPQPVPHALSGPLSGMTFAVKDLFDVAGYPTGGGNPHLLALSGIKRRTAPVVQRLLDNGARFIGKTHTSELAYSMSGHNVHYGTPRNGAAPNHIPGGSSSGSASAVSNGVCDFALGTDTGGSVRTPASYCGLFGLRPTHGRISLDGCQPLCATMDTCGFFAQTPEVFRAVADCLLDAKPPAIAGVALACHDALFSRLPLRSQQALLPVRQRLERVFGTFTPLNASLPDIDEIYLAFRQIQGFEAWQAQGETIERYGLQLGPDVRERFLWGKAVTPAQYEAACQRREHFTRWWDALLGDAILVLPTVPDGAPLLTAQAEEIETTRRLSHDLLLISVMTRRPQVTLPVAQAGGLPLGISFLGPRGSDRLLVELAVAFAQGDKDEQ
>NZ_CP013338.1|WP_054829222.1|3954443_3955454_-|ABC-transporter-ATP-binding-protein
MSHEAFVHIRDLRVEFRRDGQTVNAVNGVSFDVHKGEVMALIGESGSGKSVTLRALMRLHPPTSSVLSGTLRVGDEEVLKMSASRLRAYRGARCAMIFQEPLLAFDPVYTVGQQIVEGLRRHEGLSRQAARERALEALRQVRIPSPERRLDAYPHEMSGGMRQRAMIALALSCNPQLLLADEPTTALDATVQIQILILLREQQKQRELAIIFVTHDIGAAVEIADRVAVMYAGRIVEEASMTDILSRPRHPYTQVLLGSRPKDGLKKGDALHCIPGSPPDLSRLPPGCAFADRCPHARPVCRQTQPVTEQAGQRHVVSCHRWRELTSGVEKPALYA

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Crispr_ID: NZ_CP013338_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013338_4

4863487-4863709

Orphan

Consensus_repeat	Method
AGCGCCAGCGGGGAGGTTCCCGGACAGCGGGATAACCCCCTGGCCCGGGCTACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013338_4

>merge|NZ_CP013338|4|4863487-4863709|CRISPRCasFinder
AGCGCCAGCGGGGAGGTTCCCGGACAGCGGGATAACCCCCTGGCCCGGGCTACGCACCGACACCCACCGTACCCCGGTAAACACAGCGCCAGCGGGGAGGTTCCCGGACAGCGGGATAAACCCCTGGCCCGGGCTACGCGTCGGCCCCCACCGTACCGCGGTAAACATAGCGCCAGCGGGGAGGTTCCCGGACAGCGGGATAAACCCCTGGCCCGGGCTACGC

>NZ_CP013338|4|4|4863487-4863709|CRISPRCasFinder
AGCGCCAGCGGGGAGGTTCCCGGACAGCGGGATAACCCCCTGGCCCGGGCTACGC	ACCGACACCCACCGTACCCCGGTAAACACAGCGCCAGCGGGGAGGTTCCCGGACAGCGGGATAAACCCCTGGCCCGGGCTACGCGTCGGCCCCCACCGTACCGCGGTAAACAT
AGCGCCAGCGGGGAGGTTCCCGGACAGCGGGATAAACCCCTGGCCCGGGCTACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013338.1\|WP_015585289.1\|4857003_4858623_-\|glycoside-hydrolase-family-43-protein	unknown	unknown	gnl\|CDD\|226038
NZ_CP013338.1\|WP_004857340.1\|4875057_4875879_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|226615
NZ_CP013338.1\|WP_004857383.1\|4860374_4862342_-\|YjhG/YagF-family-D-xylonate-dehydratase	unknown	unknown	gnl\|CDD\|236189
NZ_CP013338.1\|WP_064357611.1\|4862356_4863265_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|223406
NZ_CP013338.1\|WP_004857337.1\|4875977_4877480_+\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP013338.1\|WP_004857355.1\|4869309_4871223_+\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281
NZ_CP013338.1\|WP_004857371.1\|4863929_4864829_-\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NZ_CP013338.1\|WP_064357612.1\|4865779_4866793_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP013338.1\|WP_015585288.1\|4854492_4855803_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP013338.1\|WP_004857345.1\|4873199_4874705_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP013338.1\|WP_004857393.1\|4856240_4856999_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP013338.1\|WP_064357609.1\|4853426_4854500_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NZ_CP013338.1\|WP_004857406.1\|4851698_4852586_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP013338.1\|WP_004857359.1\|4866840_4868781_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|275170
NZ_CP013338.1\|WP_004857352.1\|4871373_4872234_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP013338.1\|WP_004857366.1\|4864852_4865737_-\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP013338.1\|WP_064357606.1\|4852596_4853421_+\|phosphodiesterase	unknown	unknown	gnl\|CDD\|277347
NZ_CP013338.1\|WP_015585291.1\|4872371_4873181_-\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|226241
NZ_CP013338.1\|WP_004857385.1\|4858635_4860015_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|236610
NZ_CP013338.1\|WP_064357604.1\|4850836_4851709_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096

Protein	Function_ID	Function_description	E-value
NZ_CP013338.1\|WP_015585289.1\|4857003_4858623_-\|glycoside-hydrolase-family-43-protein	gnl\|CDD\|226038	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism].	0
NZ_CP013338.1\|WP_004857340.1\|4875057_4875879_+\|TIM-barrel-protein	gnl\|CDD\|226615	COG4130, COG4130, Predicted sugar epimerase [Carbohydrate transport and metabolism].	4.30518e-96
NZ_CP013338.1\|WP_004857383.1\|4860374_4862342_-\|YjhG/YagF-family-D-xylonate-dehydratase	gnl\|CDD\|236189	PRK08211, PRK08211, YjhG/YagF family D-xylonate dehydratase.	0
NZ_CP013338.1\|WP_064357611.1\|4862356_4863265_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|223406	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].	8.6728e-107
NZ_CP013338.1\|WP_004857337.1\|4875977_4877480_+\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP013338.1\|WP_004857355.1\|4869309_4871223_+\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0
NZ_CP013338.1\|WP_004857371.1\|4863929_4864829_-\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	2.0103e-155
NZ_CP013338.1\|WP_064357612.1\|4865779_4866793_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	6.88337e-60
NZ_CP013338.1\|WP_015585288.1\|4854492_4855803_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.03803e-110
NZ_CP013338.1\|WP_004857345.1\|4873199_4874705_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP013338.1\|WP_004857393.1\|4856240_4856999_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.4381e-89
NZ_CP013338.1\|WP_064357609.1\|4853426_4854500_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	6.40608e-156
NZ_CP013338.1\|WP_004857406.1\|4851698_4852586_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	5.67643e-67
NZ_CP013338.1\|WP_004857359.1\|4866840_4868781_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|275170	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase. Members of this protein family, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase (iolD), represent one of eight enzymes in a pathway converting myo-inositol to acetyl-CoA. IolD hydrolyzes the cyclic molecule 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione to yield 5-deoxy-D-glucuronic acid. TPP is a cofactor. [Energy metabolism, Sugars].	0
NZ_CP013338.1\|WP_004857352.1\|4871373_4872234_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.96963e-78
NZ_CP013338.1\|WP_004857366.1\|4864852_4865737_-\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.00858e-41
NZ_CP013338.1\|WP_064357606.1\|4852596_4853421_+\|phosphodiesterase	gnl\|CDD\|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	5.95922e-89
NZ_CP013338.1\|WP_015585291.1\|4872371_4873181_-\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|226241	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism].	2.78369e-155
NZ_CP013338.1\|WP_004857385.1\|4858635_4860015_-\|MFS-transporter	gnl\|CDD\|236610	PRK09669, PRK09669, putative symporter YagG; Provisional.	0
NZ_CP013338.1\|WP_064357604.1\|4850836_4851709_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.61406e-76

>NZ_CP013338.1|WP_064357611.1|4862356_4863265_-|dihydrodipicolinate-synthase-family-protein
MPQTVQFSGIIPPVSTIFTADGQFDKPGTAALIDDMIAAGVDGLFFLGSGGEFSQLNADERKAIAAFAIAHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEPNLIRYFQQVADSVTLPVLLYNFPALSGQDLTPALVKTLADSRSNIVGIKDTIDSVAHLRSMIETVKSAHPHFSVLCGYDDHLFNTLLLGGDGAISASGNFAPQISVKLLQAFRDGNLAEAARYHQTLLQIPQLYQLDTPFVNVIKEAIVLCGRPISTHVLPPSSPLDEAKKRQLKTLLQQLRLC
>NZ_CP013338.1|WP_004857383.1|4860374_4862342_-|YjhG/YagF-family-D-xylonate-dehydratase
MAIETIFTPQNDAFYAVITHAAGPQGALPLTPQMLMESPSGNLFGMTQNAGMGWDANKLTGKEVLIIGTQGGIRAGDGRPVALGYHTGHWEIGLQMQAAAREITRNGGIPFAAFVSDPCDGRSQGTHGMFDSLPYRNDAAIVFRRLIRSLPTRRAVIGVATCDKGLPATMIALAAMHDLPTILVPGGATLPPTFGEDAGKVQTIGARYANHELSLQEAAELGCRACASPGGGCQFLGTAGTSQVVAEALGLALPHSALAPSGQDVWLEISRQSARAVSELDNRGITTRDILTDKAIENAMVIHAAFGGSTNLLLHIPAIAHAAGCTIPDVAHWTRINRSVPRLVSVLPNGPDYHPTVRAFLAGGVPEVMLHLRDLGLLHLDAMTVTGQTVGENLDWWQTSERREKFRQCLREQDGVDPDDVILPPARAKAKGLTSTVAFPVGNIAPEGSVIKATAIDPSVVDDDGVYRHTGRARVFVSEARAIKAIKNGEIEQGDIMVVIGGGPSGTGMEETYQLTSALKHVSWGKTVSLITDARFSGVSTGACFGHVAPEALAGGPIGKLRDDDVIEIVVDRLALTGHVNFIGTAHQRLTPEEGAAELAARTPHPDLHAHDFLPDDTRLWAALQSVSGGTWKGCIYDTDKIIEVINAGKKALGI
>NZ_CP013338.1|WP_004857385.1|4858635_4860015_-|MFS-transporter
MQLTMKDKIGYGLGDTACGFVWQATMFLLAYFYTDVFGLSAGIMGTLFLVSRVLDAVTDPLMGLLVDRTRTRYGQFRPFLLWGAIPFGIVCMLTFYTPDFSAQGKIIYACVTYILLTLVYTFVNVPYCAMPGVITADPKERHALQSWRFFLAAAGSLAISGIALPLVSIIGKGNEQVGYFGAMCVLGLTGVVLLYVCFFTTRERYTFDVQPGASVAKDLKLLFGNTQWRIMCAFKMMATCSNVVRGGATLYFVKYVMDHPELAMQFLLYGSIATMFGSLASSRLLGRFDRVKAFKGIIVVYSLISLLIFVTPADYIALIFALNIVFLFVFNTTTPLQWLMASDVVDYEESRSGRRLDGLVFSTYLFSLKIGLAIGGAVVGWILAYVNYSASSSVQPVEVLTTIKILFCVVPVVLYIGMFTMLSLYKLTDARVEAISQQLRQHRAAQEEGVPAAAAATSH
>NZ_CP013338.1|WP_015585289.1|4857003_4858623_-|glycoside-hydrolase-family-43-protein
MYTITNPILTGFNPDPSMCRQGEDYYIATSTFEWFPGVRIYHSRDLKNWSLVSTPLDRVSMLDMKGNPDSGGIWAPCLSYADGLFWLLYTDVKIVDSPWKNGRNYLVTAPSIEGPWSEPIAMGNGGFDPSLFHDSDGRKYYIYRPWGPRHHSDPHCTIVLQEYFPQTQTLSKTRKTLFTGTALRYTEGAHLYHKEGWYYLLVAEGGTSYEHAVVVLRAKNIDGPYELHPDGTLMTSWHLPENPLQKSGHGSLLETHTGEWYMAYLTSRPQRLPGVPLLASGGRGYCSLGRETGIARIAWHDGWPSVEGGKHAQLNVPGPQMAESRVVADERWREEFNRPTLNPELQTLRIPFDDTLGSLNARPGFLRLYGNDSLNSTFTQSTVARRWQHFAFRAETRMEFAPQNFQQSAGLTCYYNSKNWSYCFVDYEEGQGRTIKVLQLDHNVPSWPLHEHPIAVPDAAQSIWLRVDVDHLVYRYSYSFDGEQWHTVPVEYAAWKLSDDYIGGRGFFTGAFVGLHCEDISGDGCYADFDYFSYEPVVG
>NZ_CP013338.1|WP_004857393.1|4856240_4856999_+|IclR-family-transcriptional-regulator
MPIIQSVERALTILDLFNEQATELKITDISKQMGLSKSTLHSLLKTLQLHGYIDQNPENDKYRLGMKLVERGHFVVGTMDIRQKAKSWLTDLSQRTGQTTHLGILDGHEGVYIEKIEGRLAAIAYSRIGRRLPIHATAIGKVLIAWLSEAEQNTLLEGYQYTPFTPATLTSREALLAALAQTRAQGYAQDSEENEQGVRCVAVPVWNHESRVIAALSLSTLTSRVDEAELARYRALLEEAGRQLSKALGYPA
>NZ_CP013338.1|WP_015585288.1|4854492_4855803_+|ABC-transporter-substrate-binding-protein
MLKPLTALAVGLSLALSGAALAKEKIDFMFPAPVDGKLTMEMTRVIKAFNDSQQDVEVRGIFTGNYDTTKIKAESAQKAGQPPALVIMSANFTTDLALKDEILPMDDLFQYGDQKAGDFLVKEFWPAMHKNAQVMGTTYAIPFHNSTPILYYNKTMFDRAGIAQPPQTWAELLADAKKLTDESKGQWGIMLPSTNDDYGGWIFSALVRANGGKYFNEDYPGEVYYNAPTTIGALRFWQDLIYKDKVMPSGVLNSKQISASFFSGKVGMAMLSTGALGFMRENSKDFELGVAMLPAKEQRAVPIGGASLVSFKGINDAQKKAAYQFLTYLVSPQVNGAWSRFTGYFSPRKASYDTPEMKAYLQQDPRAAIALEQLKYAHPWYSTWETVAVRKAMENQLAAVVNDAKVTPEAAVQTAQKEADTLMKPYVDKTALAEVK
>NZ_CP013338.1|WP_064357609.1|4853426_4854500_+|ABC-transporter-ATP-binding-protein
MLSLQNISKRFDGKPALDALSLDIHEGEFVVLVGPSGCGKSTLLRLLAGLEPVSEGEIWLHDQNITALSPRERNFAMIFQNYALFPHLSVQDNITFGMKVRKEDKASWQPRVDKVAQMLQLETLLDRKPAKLSGGQRQRVAMARAIVRNPRLFLMDEPLSNLDARLRSEVRDSIMDLHQQLKTSTVYVTHDQTEAMSMADRIVVMNGGHVQQVGRPEYLYAHPANLFVAGFIGSPAMNLLSLPCADGEVQLGDLRHPLPPHYRDESRVWFGIRPEHISDRVEEGHLRLCATVLQRELMGADYLLHVSTPIGTLRFSRRHRGAVPEKGDTLILGFSPADIHLFHAEQQHNLLQEIDHA
>NZ_CP013338.1|WP_064357606.1|4852596_4853421_+|phosphodiesterase
MLLAQISDTHFRSRGQKLYGFIDVNADNADVVSQLNALQERPDAVVVSGDIVNCGRPQEYEVARQILGSLNYPLYLIPGNHDDKALFLEYLHPLCPQLGSDPQNMHYAVDDFATRLLFIDSSRAGTSSGWLTDETIKWLEAQLFDGGDKPATVFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTLTQYRQAIISTIPGTVHQVPYFHEDRRPYYDLSPASCLMHRQVGEQWVSYQHPLTHHAGPWLYDENISCPTEER
>NZ_CP013338.1|WP_004857406.1|4851698_4852586_+|carbohydrate-ABC-transporter-permease
MSAEASPLVVRSPVASLPLWLRLRRSQPFTLSVLMCCLALLWVSPFIWMLATAFSATTFGEDMASLLPRLPLTLDNFRDAWASADWLSLYANTLIFTFGTFFVQLLTITTAGYVFACHQFRGKQTLFLLFLVQLMIMPVVMMVPNMLTLKTFGLLNTLTGVMMPYFTSAFGVFLMRQAFLAIPKELEEAALMEGCRWWQVLFRVLLPMSWPSVLAFATVSITYHWNEYLWPLMMLNDPDKQVLTVGLVSFAMGAESGGQWGTIGAGTLMVCLPLMLAFILFQKQFLRSFGFSGIK
>NZ_CP013338.1|WP_064357604.1|4850836_4851709_+|sugar-ABC-transporter-permease
MRKTWLPWLILSPSLLFLLLFTWFPLGRSVYDSLFDTRMASDNAPFVGLDNFVRLFADNVFWQSLLNNLLYILLTVVPGVTLALLLAVALSENHRVNRWLRTAFFFPMIIPMVSAAALWLFIFMPGLGLLDHYLAKLFGPMNNNWLGRSNSALLALALIGVWKFAGYYMLFFLAGLQSIPVSTREAAIMEGATRSQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLYYIQNLAWDTHDLGKASAATFLTLAGLFAFSLLNLKLLEKGAHYER
>NZ_CP013338.1|WP_004857371.1|4863929_4864829_-|myo-inosose-2-dehydratase
MNKDNVKLAIAPIGWTNDDMPELGSENTFQQIVSEMALAGFSGSEVGSKYPRDPAVLKPMLDIRGIQICNAWFSTFFANGQREKTIDEFVNHMNFLQAMGAKVIGCSEQSGSIQGLEKPILGEAKPCFSEEEWQRVAEGYNTLGRLAAEKGMQVCLHHHMGTGIQTTEEIDKFMSLVDDKVFLLYDTGHAWYSEGGEAPMLAILEKYLPRINHVHLKDVRPSVIEQVRREGLSFLDGVKKGTFTVPGDGVIDFRPVFKLLDDRGYKGWMVVEAEQDPALANPFEYALKARKYIRETAGI
>NZ_CP013338.1|WP_004857366.1|4864852_4865737_-|sugar-phosphate-isomerase/epimerase
MKIAFDVDVIRDLGITRMVHQVAEWGYKYIEQSPHPQINPFYKHPRAGREVIAEYKQALRETGVEISSFICVYRWSGPDELRRQAAVKNWKRLIEVAVEMGVQVINTEFSGDPNQPEICEEMFYRSMDELLPIFEREGIRVEIQAHPWDFCEEHNETVDIVKSFRSENVKYVYSVPHTFFYDKGKGEVEKMLRYAGGDLSHVLIADTRNHTKHCRYIVNPPGVDAAVHQHVGVGEGDVDFDALFRTLREMNFAEQTFKVGGAPIVAASLFGYPEKMKYQAVETRELIERELLRR
>NZ_CP013338.1|WP_064357612.1|4865779_4866793_-|Gfo/Idh/MocA-family-oxidoreductase
MSLKLGVIGAGAIGKEHIRRCTQVLQGATVVAVSDINAESARAAVALPGVQAEIYTDGHDVIRSGDVDAILVTSWDPTHEEYTLAAIAAGKPVFCEKPLAMSAEGCRRIVDAEMKAGRRLVQVGFMRPYDEGYLALKKVIDDGDIGAPLMLHCAHRNQSVGENYTTDMAITNTLIHELDVLRWLLNDDYRSVQVRFPRSTSHTHPRLRDPQIVSFETRKGTLIDVEVFVNSQYGYDIQCEVVGETGIARLPEPSAIQMRKSANLSTAILTDWKDRFIKAYDVELQAFINDVKAGQLQGPSAWDGYAASVAADACLQAQESSEPVAVTLPECPAFYQR
>NZ_CP013338.1|WP_004857359.1|4866840_4868781_-|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MGKLRLTMAQALVKFLDNQFLDVDGEEHKFVKGIFAIFGHGNVLGLGQALEQDSGDMRVFQGRNEQGMAHVATGFARQSLRRQIIACTSSVGPGAANMITAAATATANRIPLLLLPGDVFATRQPDPVLQQVEQSYDLSISTNDAFRAVSKYWDRITRPEQLMSACINAMRVLTDPAETGAVTLCLPQDVQGEAWDYPESFFVRRVHRLDRRPASAAQLADAVAAIKASRKPLIICGGGVKYAGAGEALSRFAERYGIPFAETQAGKGTVVSSHPLNVGGVGETGCLAANLLAKEADLVIGIGTRFSDFTTSSKWLFQHPGVRFLNVNVSNFDAWKLDGIPLLADAREALTSLDSALAGEGWQASWGAQIDSVQSRQLKETQRVYQAVWQEKAFVPEVDDALDRESVYREFRQITDSTLTQSSVLGVLNETLPADAVIVAAAGSLPGDLQRVWRNRAPNTYHVEYGYSCMGYEVNAALGVKLAQPQTEVYSLVGDGSFMMLHSELVTSLQERAKINVVLLDNMANGCINNLQIGHGMGSFGTEFRYRSAENGQLQGGLVPVDFATIAAGYGCKTWRVTTLNELRQALDAARRETISTLIDIKVLPKTMVHSYGSWWNVGVAQTALSERIRKVAEMINEKRAEARDY
>NZ_CP013338.1|WP_004857355.1|4869309_4871223_+|5-dehydro-2-deoxygluconokinase
MNAAVKRLDVICIGRVAVDLYAQQIGARLEDVASFSKYLGGSSGNVAFGTAIQGLKSAMLARVGDEHNGRFLRETLARAGVDTEYLITDKQRLTALVMLGIKDQETFPLIFYRDNCADMALVPEDINEEYIASSRALAVTGTHLSHASTRAAVLKALEYARRHGLRTALDIDYRPVLWGLTSLGDGETRFIESGPVTSQLQEVLHLFDLVVGTEEEFHIAGGSTDTLTALKNVRHATKATLVCKRGPMGCVVLEGDIPDSWDSIPLQQGVRVDVLNVLGAGDAFMSGLLRGWLNDEGWEQACRYANACGALVVSRHGCAPAMPTKVELDDYLLRAESVPRPDIDARLNHLHRVTSRRQQWPELCIFAFDHRKQLADLAHETGCDPASIPQLKLLLLAAAEAAAKEAGLEQRSGILADGTYGQSSLNAITGKGWWIGRPIELPGSRPLRLEHGNIGSQLIDWPLEHVVKCLVFYHPADPAPLRAEQDALLLEVWQACNKSGHELLLEVILPENGPDKDERHYHTMLEHFYQLGIQPDWWKLPPLSSASWEKIAGLIAREDPWCRGILLLGLDAPSDRLRAGFAEAAGHPIIKGFAVGRTIFGQPSRRWMAGELSDEALIGEVKQNYLRLIDYWREARG
>NZ_CP013338.1|WP_004857352.1|4871373_4872234_+|MurR/RpiR-family-transcriptional-regulator
MANNPTQLTILQDEIRRRYDTLSKRLKQVARYILDNSNSVAFDTVASIAQQADVPPSTLIRFANAFGFSGFNEMKQMFRQHLMEETANYTERARLFRQTTNDETSPPETPTEILNMFTMVNTQALQQLAMQTSGDDLERAVGLLAEAENIYVIGLRRSFSVASYLTYALRHLDRKAFLIDGLGGMFTEQLSLVGPKDVVVAVSFSPYAREVVELVELGAQRKARQIAITDSQVSPLAAFSDVCFVVREAQVDGFRSQVASLCLAQTLAVSLALNSSKEPQTQQNLA
>NZ_CP013338.1|WP_015585291.1|4872371_4873181_-|5-deoxy-glucuronate-isomerase
MSLLAKSRKEGQIQHITPQSAGWRYIGFDVWMLKKGQSITLESGERELCLVLVAGLASVKTTKADFPGLGQRMSPFERTPPWAVYVPTQDKVEVTADSDLELAVCSAPGKGTLPARVIRPQDVGVEHRGKGRNQRLVHNILPDNAQADCLLVVEVYTDEGATSSWPSHKHDTAQPGKETQLEETYYHRFDPPQGFALQRVYTDDRSLDACMAPYNHDVVMVPRGYHPVATIAGYDSYYLNVMAGPERKWLFTWEEDHAWINSPDYPRHD
>NZ_CP013338.1|WP_004857345.1|4873199_4874705_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MTITGNFIGGKTVTSSSNETMPVYDPATGKVVREVTLSTAQEVSDAIQVARDAFESWSRTTPLRRARVLFNFKMLLEQHAEELAGIIVSEHGKVWSDALGELTRGLEVVEFACGIPHLIKGEYSSDVGTGVDSYSLMQPLGVVAGITPFNFPAMVPMWMFPLALACGNSFVLKPPALAPTAAVRLAELLKEAGLPDGVFNVVHCSNDDAEQLYTDPRIAAVSFVGSSGVAEYIYKTASAHGKRVQAFGAAKNHAIVMPDADLDATVNAIMGGAFGSAGERCMALPVVVAVGDETADKLIARLKPLVEALKVGPGCMRGKEENEMGPVVSDTHQKKVLGYIDKGASEGAKLVVDGRKLRVSGYDDGYYVGGTLFDNVTPDMTIWREEIFGPVLGIVRVADYHSALELVNSHEFGNGSAVFTSNGHTAREFVHDVQAGMVGVNVPVPVPMAFHSFGGWKRSVFGALNVHGPDGVRFYTRMKTATVRWPQGQQTVSEFSMPTLG
>NZ_CP013338.1|WP_004857340.1|4875057_4875879_+|TIM-barrel-protein
MAIALQRFCLNRKIAPSLSIEAFFRLVNSLGLNKVELRNDLPTGKVTDDLSHQQVRELADRYHIEILTINAVYPFNRRTEQVRGLAESLLQEARAIGAKSLVLCPLNDGSEVPASETLSALRDLSPLFSFYGVRGLVEPLGFPQSSLRSAAQAQTLIRDAKVPFKLLIDTFHHHLYPQADAEFSQVDIADIGLVHLSGVEDARPRENLTDDERIMLTEKDRLQTCEQIKHLEARGYQGVYAFEPFAPELASWSEEDIRRETERSIALIQHHCA
>NZ_CP013338.1|WP_004857337.1|4875977_4877480_+|DUF853-domain-containing-protein
MSAPLLIARTREKQLHLLPGMANRHGLITGATGTGKTVTLQKLAESFSEIGVPVFMADVKGDLTGIAAAGQNSEKLQARLEKIGVTDWQPHANPVVTWDIFGEKGHPVRATVSDLGPLLLSRLLNLNEVQSGVLNIIFRIADDRGLLLLDFKDLRAITRYIGDNAKAFQNQYGNISSASVGAIQRGLLTLEQQGAEHFFGEPMLDIQDWMRLDENGKGVINILSAEKLYQMPKLYAASLLWMLSELYERLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKAVGVYFVSQNPSDIPDAVLGQLGNRVQHALRAFTPKDQKAVKTAAQTMRANPAFSTEQAIQELGTGEALISFLDEKGSPSVVERAMVIAPCSRMGPVTDDERNGLINHSPLYGKYEDEVDRESAFEKLQQGVQATAEQQNAPPAKGATADLDDGILGGLKDILFGTTGPRGGKRDGLVQTAAKSATRQITNQIVRGMLGSLLGGRRR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1791576 : 1800091

Enterobacteria_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064356863.1\|1791576_1792983_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.5e-39	29.4
WP_064356864.1\|1793197_1794262_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.9e-104	53.8
WP_064356865.1\|1794278_1795148_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.8e-112	68.4
WP_064356866.1\|1795180_1796071_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.1e-29	34.9
WP_064356867.1\|1796082_1796637_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.8e-50	55.8
WP_064356868.1\|1796813_1797980_+	UDP-glucose 6-dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	1.4e-112	54.5
WP_071887170.1\|1798258_1800091_+	acyltransferase	A0A193GZ69	Enterobacter_phage	6.6e-48	28.9

DBSCAN-SWA_2

2411478 : 2422627

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015584167.1\|2411478_2412177_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.1e-83	65.1
WP_004862888.1\|2412265_2412586_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	3.8e-20	47.4
WP_004862882.1\|2412631_2413924_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	8.1e-162	69.6
WP_015584169.1\|2413933_2414359_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	3.1e-41	62.6
WP_015584170.1\|2414338_2414980_-	CatA-like O-acetyltransferase	NA	NA	NA	NA
WP_064357772.1\|2415015_2415399_-	hypothetical protein	NA	NA	NA	NA
WP_004862872.1\|2415489_2416260_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.4e-15	29.1
WP_015584172.1\|2416608_2419824_+	molybdopterin-dependent oxidoreductase	A0A0P0IVM8	Acinetobacter_phage	1.5e-10	25.6
WP_004862868.1\|2419869_2420328_+	(2Fe-2S)-binding protein	A0A0P0IVM8	Acinetobacter_phage	7.4e-17	36.9
WP_081042484.1\|2420479_2422627_-	formate dehydrogenase subunit alpha	A0A077SK27	Escherichia_phage	1.8e-28	23.5

DBSCAN-SWA_3

4079845 : 4125355

Salmonella_phage(24.0%)

integrase,head,tRNA,holin

attL 4110324:4110339|attR 4123409:4123424

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064357335.1\|4079845_4082329_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	3.0e-197	45.0
WP_064357337.1\|4082315_4082711_-	hypothetical protein	F1C5F2	Cronobacter_phage	5.9e-39	55.6
WP_064357339.1\|4082707_4083178_-	hypothetical protein	F1C5F1	Cronobacter_phage	2.4e-26	37.9
WP_155522185.1\|4083177_4083597_-	hypothetical protein	NA	NA	NA	NA
WP_071887212.1\|4083767_4084031_+	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_064357343.1\|4084010_4084190_-	hypothetical protein	NA	NA	NA	NA
WP_064357345.1\|4084229_4087643_-	tape measure protein	Q5G8W8	Enterobacteria_phage	0.0e+00	71.7
WP_064357347.1\|4087714_4088221_-	hypothetical protein	NA	NA	NA	NA
WP_064357348.1\|4088326_4088707_-	hypothetical protein	NA	NA	NA	NA
WP_064357350.1\|4088787_4089483_-	hypothetical protein	G0ZNE7	Cronobacter_phage	1.1e-67	58.3
WP_071887194.1\|4089543_4090308_-	immunoglobulin domain-containing protein	G0ZNE6	Cronobacter_phage	2.3e-39	44.2
WP_064357351.1\|4090366_4090750_-	hypothetical protein	A0A291AXH0	Shigella_phage	1.1e-08	36.4
WP_015584738.1\|4090746_4091115_-	hypothetical protein	F1C5E3	Cronobacter_phage	7.2e-47	79.5
WP_064357353.1\|4091117_4091480_-	hypothetical protein	G0ZNE2	Cronobacter_phage	1.1e-26	51.7
WP_064357356.1\|4091653_4092055_-	hypothetical protein	I6S619	Salmonella_phage	1.8e-51	73.9
WP_049264426.1\|4092115_4092298_-	hypothetical protein	Q5G8X9	Enterobacteria_phage	1.1e-11	56.5
WP_064357359.1\|4092307_4093384_-	hypothetical protein	A0A1V0E5P6	Salmonella_phage	8.8e-194	93.9
WP_064357360.1\|4093404_4093851_-	hypothetical protein	A0A1V0E5Q8	Salmonella_phage	4.4e-67	89.0
WP_064357361.1\|4093863_4095129_-	hypothetical protein	Q5G8Y2	Enterobacteria_phage	1.5e-205	84.6
WP_064357362.1\|4095132_4096059_-\|head	phage head morphogenesis protein	I6S615	Salmonella_phage	1.6e-151	87.3
WP_064357364.1\|4096018_4097368_-	DUF1073 domain-containing protein	A0A1V0E5Q5	Salmonella_phage	1.7e-223	82.6
WP_064357366.1\|4097383_4098862_-	DNA-packaging protein	G0ZND4	Cronobacter_phage	1.8e-253	85.2
WP_064357367.1\|4098848_4099328_-	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	8.5e-56	70.7
WP_064357369.1\|4099358_4100006_-	hypothetical protein	I6S676	Salmonella_phage	2.9e-99	78.2
WP_032419913.1\|4100377_4100629_-	hypothetical protein	NA	NA	NA	NA
WP_064357371.1\|4101144_4101495_-	hypothetical protein	A0A0K2FIW3	Enterobacter_phage	1.4e-12	42.6
WP_064357372.1\|4101491_4101986_-	lysozyme	M9P0E5	Enterobacteria_phage	3.3e-87	93.3
WP_019704119.1\|4101963_4102188_-\|holin	holin	M9NZI9	Enterobacteria_phage	4.0e-32	91.9
WP_071887195.1\|4102229_4102718_-	hypothetical protein	A0A1I9SEA5	Escherichia_phage	5.1e-24	37.4
WP_064357374.1\|4103642_4104452_-	hypothetical protein	M9NZB0	Enterobacteria_phage	1.0e-122	76.2
WP_064357377.1\|4104448_4104589_-	YlcG family protein	NA	NA	NA	NA
WP_064357379.1\|4104585_4105167_-	protein ninG	E7C9S3	Salmonella_phage	7.9e-40	43.8
WP_064357382.1\|4105159_4105828_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.4e-109	82.8
WP_071887213.1\|4105824_4105992_-	NinE family protein	K7P7K0	Enterobacteria_phage	1.1e-07	58.9
WP_004223230.1\|4105997_4106594_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	2.1e-56	54.3
WP_064357384.1\|4106672_4107209_-	hypothetical protein	NA	NA	NA	NA
WP_081042489.1\|4107663_4108218_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	3.0e-49	63.7
WP_064357386.1\|4108214_4108427_-	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	3.6e-11	45.5
WP_064357389.1\|4108426_4108879_-	hypothetical protein	A0A2H4N7C3	Pectobacterium_phage	6.0e-11	38.2
WP_064357390.1\|4108875_4109367_-	hypothetical protein	NA	NA	NA	NA
WP_064357394.1\|4109812_4110106_-	hypothetical protein	O48423	Enterobacteria_phage	1.3e-27	66.7
WP_064357395.1\|4110102_4110972_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	8.1e-97	70.5
4110324:4110339	attL	NA	NA	NA	NA
WP_064357398.1\|4110956_4111856_-	hypothetical protein	G8C7U5	Escherichia_phage	2.2e-105	71.7
WP_064357399.1\|4111856_4112549_-	GIY-YIG nuclease family protein	A0A088F856	Sulfitobacter_phage	7.8e-10	46.7
WP_048757272.1\|4112635_4112956_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	3.8e-36	68.9
WP_048757274.1\|4112996_4113224_-	hypothetical protein	A0A2I6PIE5	Escherichia_phage	2.4e-16	59.2
WP_064357401.1\|4113259_4114015_+	helix-turn-helix domain-containing protein	E7C9R0	Salmonella_phage	8.9e-76	63.7
WP_064357807.1\|4114178_4115126_+	hypothetical protein	A9YX09	Burkholderia_phage	3.5e-61	41.9
WP_048757281.1\|4115611_4115806_+	hypothetical protein	NA	NA	NA	NA
WP_064357403.1\|4115894_4116290_+	hypothetical protein	NA	NA	NA	NA
WP_064357405.1\|4116419_4117079_+	exodeoxyribonuclease X	A0A1W5PTR6	Pseudoalteromonas_phage	6.4e-22	36.0
WP_064357407.1\|4117080_4117749_+	AAA family ATPase	G9L667	Escherichia_phage	3.7e-49	44.7
WP_064148586.1\|4117760_4118465_+	hypothetical protein	A0A088C400	Shewanella_sp._phage	5.1e-25	39.6
WP_064357410.1\|4118479_4118638_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	8.7e-10	56.9
WP_064357413.1\|4118634_4119228_+	adenine methylase	T1SA14	Salmonella_phage	2.1e-104	87.3
WP_064357414.1\|4119224_4120289_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	5.0e-117	58.0
WP_047684452.1\|4120285_4120504_+	hypothetical protein	NA	NA	NA	NA
WP_064357416.1\|4120505_4120724_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.5e-15	58.6
WP_019704094.1\|4120723_4120963_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	5.9e-10	43.6
WP_071549006.1\|4120975_4121311_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004191604.1\|4121187_4122351_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	5.0e-203	87.1
WP_004858880.1\|4122799_4123666_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.4e-29	34.1
4123409:4123424	attR	NA	NA	NA	NA
WP_064357417.1\|4123667_4123880_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004858875.1\|4123969_4125355_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	2.3e-45	35.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013339

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1032 : 53797

Escherichia_phage(33.33%)

integrase,transposase

attL 32945:32959|attR 58473:58487

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155522186.1\|1032_1730_-\|transposase	IS1 family transposase	A0A077SLN4	Escherichia_phage	6.5e-81	58.9
WP_148722914.1\|2036_4034_-	transketolase	NA	NA	NA	NA
WP_064357833.1\|4055_5006_-	transaldolase	A0A1D8KMI9	Synechococcus_phage	4.6e-13	36.7
WP_064357835.1\|5028_5493_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_064357907.1\|5838_6951_+	alcohol dehydrogenase catalytic domain-containing protein	A0A2K9L339	Tupanvirus	8.1e-09	25.6
WP_064357836.1\|7026_8286_+	MFS transporter	NA	NA	NA	NA
WP_064357838.1\|8397_9402_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_064357840.1\|9403_10054_+	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_064357841.1\|10273_11236_+	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_015632445.1\|11892_12300_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	1.4e-14	40.2
WP_032414478.1\|12296_12647_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.1e-39	64.7
WP_064357845.1\|12676_14266_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.2e-188	65.7
WP_064357848.1\|16770_18039_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	1.1e-59	34.2
WP_019705992.1\|18043_21301_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_032436768.1\|21301_22576_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_019706038.1\|22572_24600_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	2.1e-26	26.6
WP_017899891.1\|25330_25654_+	hypothetical protein	NA	NA	NA	NA
WP_000427620.1\|25972_26977_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_064357852.1\|27220_27997_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_113771282.1\|28220_29126_+	hypothetical protein	NA	NA	NA	NA
WP_003026790.1\|29196_29400_-	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_003026788.1\|29474_29828_-	hypothetical protein	NA	NA	NA	NA
WP_155522192.1\|29871_30066_-	hypothetical protein	NA	NA	NA	NA
WP_000110555.1\|31675_32050_+	arsenic transporter ATPase	NA	NA	NA	NA
WP_000065758.1\|32080_32506_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.2e-50	70.7
WP_000922630.1\|32518_33808_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	2.5e-171	73.5
32945:32959	attL	NA	NA	NA	NA
WP_040118429.1\|33856_35608_-	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_000783215.1\|35625_35988_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_001114073.1\|36035_36389_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	4.1e-23	50.0
WP_077253206.1\|36941_37298_+	recombination enhancement function domain protein	Q71TG3	Escherichia_phage	4.2e-36	65.2
WP_000611681.1\|37859_38381_+	hypothetical protein	A0A222YZ79	Escherichia_phage	6.4e-49	53.8
WP_004118613.1\|38377_38707_+	hypothetical protein	A0A222YYR0	Escherichia_phage	6.7e-36	65.1
WP_064357855.1\|38699_39902_+	hypothetical protein	A0A222YXT1	Escherichia_phage	3.0e-126	63.6
WP_000990392.1\|39938_40358_-	helix-turn-helix domain-containing protein	A0A222YXG1	Escherichia_phage	1.8e-06	31.4
WP_000558568.1\|40354_40666_-	type II toxin-antitoxin system HigB family toxin	NA	NA	NA	NA
WP_003031542.1\|40819_41257_+	gluconate transporter	NA	NA	NA	NA
WP_000370412.1\|41306_42002_-	lactate utilization protein C	NA	NA	NA	NA
WP_000023895.1\|41994_43422_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_001102107.1\|43432_44152_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_003033249.1\|44226_45924_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_044348657.1\|46358_47912_+	L-lactate permease	NA	NA	NA	NA
WP_081042494.1\|49055_50939_+	EAL domain-containing protein	NA	NA	NA	NA
WP_064357859.1\|50965_51913_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	5.1e-12	30.6
WP_001515717.1\|53056_53797_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
58473:58487	attR	NA	NA	NA	NA

DBSCAN-SWA_2

86114 : 150201

Leptospira_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152292706.1\|86114_87234_+\|transposase	IS3-like element ISKpn34 family transposase	S5WIU1	Leptospira_phage	6.6e-51	43.3
WP_155522193.1\|87439_87628_+	hypothetical protein	NA	NA	NA	NA
WP_131056982.1\|87664_87961_+	hypothetical protein	NA	NA	NA	NA
WP_064357871.1\|88441_91081_+	type IV secretion system protein TraC	NA	NA	NA	NA
WP_032716659.1\|91080_91473_+	type-F conjugative transfer system protein TrbI	NA	NA	NA	NA
WP_032716660.1\|91469_92099_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_049268071.1\|92109_93099_+	conjugal transfer pilus assembly protein TraU	NA	NA	NA	NA
WP_032700817.1\|93111_93741_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_032716661.1\|93740_95696_+	type-F conjugative transfer system mating-pair stabilization protein TraN	NA	NA	NA	NA
WP_032700815.1\|95711_96092_+	hypothetical protein	NA	NA	NA	NA
WP_032700814.1\|96081_96318_+	conjugal transfer protein TrbE	NA	NA	NA	NA
WP_032700812.1\|96543_96870_+	hypothetical protein	NA	NA	NA	NA
WP_032724578.1\|96892_97645_+	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA
WP_032700810.1\|97655_97892_+	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA
WP_032716665.1\|97866_98433_+	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA
WP_032716666.1\|98425_98854_+	conjugal transfer protein TrbF	NA	NA	NA	NA
WP_064357873.1\|98840_100211_+	conjugal transfer protein TraH	NA	NA	NA	NA
WP_064357874.1\|100210_103033_+	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA
WP_032716668.1\|103058_103673_+	hypothetical protein	NA	NA	NA	NA
WP_032716670.1\|103867_104599_+	complement resistance protein TraT	NA	NA	NA	NA
WP_032716692.1\|104792_107123_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_064357876.1\|107122_112384_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_064357878.1\|112476_113202_+	type-F conjugative transfer system pilin acetylase TraX	NA	NA	NA	NA
WP_032716672.1\|113343_113931_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_064357880.1\|114042_114828_+	DsbA family protein	NA	NA	NA	NA
WP_064357883.1\|114867_115512_+	hypothetical protein	NA	NA	NA	NA
WP_063851066.1\|115665_116250_+	hypothetical protein	NA	NA	NA	NA
WP_063923534.1\|116382_116982_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_044348800.1\|116988_117555_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	6.1e-21	39.6
WP_040118434.1\|117695_117965_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_071887233.1\|118180_118252_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_071887225.1\|118244_119117_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_155522188.1\|120465_121544_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.3e-51	42.4
WP_064357887.1\|121690_122053_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_062933092.1\|122092_122677_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_064357890.1\|123353_124154_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
WP_060210599.1\|124196_124487_-	hypothetical protein	NA	NA	NA	NA
WP_064357892.1\|124552_125878_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_064357893.1\|125990_126611_-	LysE family translocator	NA	NA	NA	NA
WP_001553819.1\|126695_129593_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
WP_000509966.1\|129687_130293_+	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
WP_155522189.1\|130759_131906_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.1e-146	92.2
WP_032693909.1\|132141_133260_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_064357895.1\|133292_134366_-	oxidoreductase	NA	NA	NA	NA
WP_032693911.1\|134365_135112_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.1e-25	37.9
WP_032693912.1\|135113_135926_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_032693914.1\|135999_136821_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_032693915.1\|137016_138093_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_064357896.1\|139108_139267_-	hypothetical protein	NA	NA	NA	NA
WP_016947509.1\|139650_140517_-	DMT family transporter	NA	NA	NA	NA
WP_050595137.1\|140537_141368_-	TIM barrel protein	NA	NA	NA	NA
WP_003031954.1\|141367_142108_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-29	41.0
WP_003031955.1\|142107_142770_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_071887228.1\|142813_143569_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_064357898.1\|143634_144465_-	carbohydrate kinase	NA	NA	NA	NA
WP_003031958.1\|144470_145508_-	SIS domain-containing protein	NA	NA	NA	NA
WP_064357900.1\|145738_146836_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_064357902.1\|147248_148319_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_155522190.1\|148473_148899_-\|transposase	transposase	Q9ZXG3	Shigella_phage	2.2e-23	57.4
WP_155522191.1\|149506_150201_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.3e-129	94.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP013340

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4541 : 53851

Escherichia_phage(38.89%)

integrase,transposase

attL 10505:10519|attR 54505:54519

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019705993.1\|4541_5810_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	1.1e-59	34.4
WP_019705992.1\|5814_9072_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_032436768.1\|9072_10347_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_064357914.1\|10343_12302_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	2.3e-22	26.3
10505:10519	attL	NA	NA	NA	NA
WP_081042496.1\|12440_14132_+	glycogen/starch/alpha-glucan family phosphorylase	A0A140XAG6	Dickeya_phage	1.1e-25	70.5
WP_009653206.1\|14083_14329_+	phosphoglucomutase	NA	NA	NA	NA
WP_064357916.1\|14453_15020_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_004197671.1\|15354_15633_+	hypothetical protein	NA	NA	NA	NA
WP_001567369.1\|16931_17564_+	hypothetical protein	NA	NA	NA	NA
WP_001567368.1\|17592_18996_-\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_001567367.1\|19267_19702_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_001567366.1\|19748_20297_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_064357917.1\|20790_21099_+	hypothetical protein	NA	NA	NA	NA
WP_096907738.1\|22323_22518_-	hypothetical protein	NA	NA	NA	NA
WP_085950818.1\|22640_23761_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_064343465.1\|24786_25044_-	hypothetical protein	NA	NA	NA	NA
WP_064357918.1\|26378_27083_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	2.0e-138	99.1
WP_021313689.1\|27337_27838_+	non-heme ferritin-like protein	NA	NA	NA	NA
WP_016947617.1\|27985_28966_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	6.8e-185	98.8
WP_000780222.1\|29243_29525_-	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
WP_000493286.1\|29505_29835_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
WP_001572362.1\|30880_31903_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_001067855.1\|32055_32760_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001137910.1\|33367_33688_+	DUF134 domain-containing protein	NA	NA	NA	NA
WP_064357920.1\|33662_34124_+	dinitrogenase iron-molybdenum cofactor	NA	NA	NA	NA
WP_016241611.1\|34284_34722_+	PaaI family thioesterase	NA	NA	NA	NA
WP_000043177.1\|34836_35313_+	DNA starvation/stationary phase protection protein	G0X506	Salmonella_phage	6.7e-05	28.7
WP_000928911.1\|35617_35968_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001243598.1\|38032_38497_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_001067855.1\|40840_41545_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_045286941.1\|41630_41771_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_021312768.1\|41868_42285_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_021312767.1\|42281_42512_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_006788213.1\|43139_43358_+	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_006788214.1\|43359_43665_+	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_016240356.1\|45071_45866_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.2e-51	87.8
WP_006788217.1\|46305_46485_-	hypothetical protein	NA	NA	NA	NA
WP_016946792.1\|46604_47231_-	ParA family plasmid-partitioning AAA ATPase	A0A222YXS3	Escherichia_phage	2.2e-40	43.6
WP_004098982.1\|47807_48683_-	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	5.6e-82	56.4
WP_064357922.1\|49094_50366_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.9e-151	63.3
WP_006796638.1\|50365_50797_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_064357924.1\|52239_52488_+	helix-turn-helix transcriptional regulator	A0A248SLB9	Klebsiella_phage	2.1e-10	50.7
WP_096807527.1\|53173_53851_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.1e-21	50.5
54505:54519	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013338

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013339

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP013340

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection