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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013274 Bacillus thuringiensis strain CTC, complete genome 5 crisprs cas3,csa3,WYL,c2c9_V-U4,DinG,cas14k,cas14j,DEDDh 0 2 7 0
NZ_CP013273 Bacillus thuringiensis strain CTC plasmid, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP013274
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013274_1 1189203-1189311 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013274_2 2818352-2818515 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013274_3 3257685-3257893 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013274_4 3260725-3260825 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013274_5 5085558-5085755 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP013274_5 5.2|5085645|31|NZ_CP013274|CRISPRCasFinder 5085645-5085675 31 MN694491 Marine virus AFVG_250M564, complete genome 9061-9091 7 0.774
NZ_CP013274_5 5.2|5085645|31|NZ_CP013274|CRISPRCasFinder 5085645-5085675 31 MG945583 UNVERIFIED: Microviridae sp. isolate 3973-1602, complete genome 2021-2051 8 0.742
NZ_CP013274_5 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder 5085699-5085732 34 MT375529 Pelagibacter phage Kolga EXVC01, complete genome 47307-47340 10 0.706
NZ_CP013274_5 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder 5085699-5085732 34 MT375519 Pelagibacter phage Aegir EXVC01, complete genome 13799-13832 10 0.706
NZ_CP013274_5 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder 5085699-5085732 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 47181-47214 11 0.676
NZ_CP013274_5 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder 5085699-5085732 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 47565-47598 11 0.676
NZ_CP013274_5 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder 5085699-5085732 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 47949-47982 11 0.676
NZ_CP013274_5 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder 5085699-5085732 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 48333-48366 11 0.676
NZ_CP013274_5 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder 5085699-5085732 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 48717-48750 11 0.676
NZ_CP013274_5 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder 5085699-5085732 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 49101-49134 11 0.676
NZ_CP013274_5 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder 5085699-5085732 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 49485-49518 11 0.676

1. spacer 5.2|5085645|31|NZ_CP013274|CRISPRCasFinder matches to MN694491 (Marine virus AFVG_250M564, complete genome) position: , mismatch: 7, identity: 0.774

ttcttcttttttgtcactagtcgaaccgcta	CRISPR spacer
attttcttttctgtcactagttgaacgactt	Protospacer
 *.*******.**********.**** .** 

2. spacer 5.2|5085645|31|NZ_CP013274|CRISPRCasFinder matches to MG945583 (UNVERIFIED: Microviridae sp. isolate 3973-1602, complete genome) position: , mismatch: 8, identity: 0.742

ttcttcttttttgtcactagtcgaaccgcta	CRISPR spacer
ttcttcttttttgtccctaatcgtcttgttt	Protospacer
*************** ***.***  ..*.* 

3. spacer 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder matches to MT375529 (Pelagibacter phage Kolga EXVC01, complete genome) position: , mismatch: 10, identity: 0.706

cttgtcttctgttttactttctggttttgtgctt	CRISPR spacer
tacttgttctgttttagtttctgtttttgtttct	Protospacer
. . * ********** ****** ****** ..*

4. spacer 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder matches to MT375519 (Pelagibacter phage Aegir EXVC01, complete genome) position: , mismatch: 10, identity: 0.706

cttgtcttctgttttactttctggttttgtgctt	CRISPR spacer
tacttgttctgttttagtttctgtttttgtttct	Protospacer
. . * ********** ****** ****** ..*

5. spacer 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggttttgtgctt	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.. .. .*

6. spacer 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggttttgtgctt	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.. .. .*

7. spacer 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggttttgtgctt	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.. .. .*

8. spacer 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggttttgtgctt	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.. .. .*

9. spacer 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggttttgtgctt	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.. .. .*

10. spacer 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggttttgtgctt	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.. .. .*

11. spacer 5.3|5085699|34|NZ_CP013274|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggttttgtgctt	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.. .. .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 246482 : 254431 6 uncultured_virus(33.33%) NA NA
DBSCAN-SWA_2 286483 : 294855 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 778387 : 788604 9 Bacillus_phage(75.0%) holin NA
DBSCAN-SWA_4 1894672 : 1903122 8 Bacillus_phage(71.43%) NA NA
DBSCAN-SWA_5 2512342 : 2517431 12 Bacillus_phage(90.0%) NA NA
DBSCAN-SWA_6 2682934 : 2692074 11 Geobacillus_phage(25.0%) NA NA
DBSCAN-SWA_7 4415030 : 4422711 10 Staphylococcus_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP013273
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 245 : 23943 40 Lactococcus_phage(82.5%) capsid,portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage