CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP012988	Klebsiella pneumoniae strain KpN01 plasmid pKpN01-CTX, complete sequence	0 crisprs	RT	0	2
NZ_CP012990	Klebsiella pneumoniae strain KpN01 plasmid pKpN01-NDM7, complete sequence	0 crisprs	NA	0	0
NZ_CP012991	Klebsiella pneumoniae strain KpN01 plasmid pKpN01-COL, complete sequence	0 crisprs	NA	0	0
NZ_CP012989	Klebsiella pneumoniae strain KpN01 plasmid pKpN01-SIL, complete sequence	0 crisprs	csa3	0	1
NZ_CP012987	Klebsiella pneumoniae strain KpN01 chromosome, complete genome	6 crisprs	csa3,cas3,DinG,WYL,DEDDh	2	9

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10705

Escherichia_phage(37.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060579413.1\|0_756_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	2.9e-135	95.2
WP_000368714.1\|1521_2727_+	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
WP_060579414.1\|2726_3701_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.5
WP_060579415.1\|3782_5054_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	6.4e-151	63.3
WP_048993623.1\|5053_5485_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_162779385.1\|5892_7380_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.9e-29	34.1
WP_004152353.1\|7628_8600_+	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_032330269.1\|8602_9274_+	Mediator of plasmid stability	NA	NA	NA	NA
WP_001568040.1\|9336_9567_+	hypothetical protein	NA	NA	NA	NA
WP_014343518.1\|9685_9802_+	hypothetical protein	NA	NA	NA	NA
WP_004152355.1\|10003_10705_+	DNA methylase	A0A2I7RE86	Vibrio_phage	7.1e-27	36.7

DBSCAN-SWA_2

71975 : 156818

Escherichia_phage(27.59%)

integrase,protease,transposase

attL 71911:71970|attR 119679:120500

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
71911:71970	attL	NA	NA	NA	NA
WP_001067855.1\|71975_72680_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000046891.1\|73805_74141_-	thermonuclease family protein	G8DH70	Emiliania_huxleyi_virus	2.8e-05	35.7
WP_001515734.1\|74383_74947_+\|transposase	transposase	NA	NA	NA	NA
WP_001348195.1\|75011_75386_+	cupin domain-containing protein	NA	NA	NA	NA
WP_001097412.1\|75409_75973_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|77374_78079_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_032140899.1\|79700_79943_+	hypothetical protein	NA	NA	NA	NA
WP_000164043.1\|79974_80625_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000804064.1\|80730_81930_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000058717.1\|81961_82846_-	EamA family transporter	NA	NA	NA	NA
WP_001351729.1\|82983_83376_-	cysteine hydrolase	NA	NA	NA	NA
WP_000509966.1\|84152_84758_-	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
WP_023307208.1\|84852_87750_+\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	5.5e-182	37.8
WP_014386481.1\|90157_90802_+	quinolone resistance pentapeptide repeat protein QnrB1	NA	NA	NA	NA
WP_001067855.1\|91674_92379_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000845048.1\|92924_93938_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004201280.1\|94093_94567_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001144737.1\|94787_95054_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_001389365.1\|95196_95961_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_004098817.1\|96221_97436_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001288432.1\|97469_98903_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
WP_001067855.1\|99221_99926_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001393253.1\|102804_103137_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_000239590.1\|103183_104059_-	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_000608644.1\|104314_105577_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_001235713.1\|106140_106698_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000027057.1\|106880_107741_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001120891.1\|107950_108490_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000480968.1\|108461_109298_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|109297_110101_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_001043260.1\|110161_110977_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000954592.1\|111306_111483_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_000427619.1\|111664_112669_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001067855.1\|114267_114972_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001445937.1\|115352_116309_+	hypothetical protein	NA	NA	NA	NA
WP_011977825.1\|116335_116497_+	hypothetical protein	NA	NA	NA	NA
WP_000176305.1\|116493_117105_-	DUF2913 family protein	NA	NA	NA	NA
WP_001568067.1\|117158_117440_-	hypothetical protein	NA	NA	NA	NA
WP_011977766.1\|117612_117948_+	C2H2-type zinc finger protein	NA	NA	NA	NA
WP_001067855.1\|118968_119673_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001695382.1\|119785_120127_+	recombinase family protein	A0A219Y912	Aeromonas_phage	3.4e-19	50.0
WP_015065500.1\|120173_120824_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.8e-77	60.6
119679:120500	attR	NA	NA	NA	NA
WP_019725651.1\|121120_122116_+	hypothetical protein	A0A2H4UVR4	Bodo_saltans_virus	2.1e-32	34.9
WP_019725650.1\|122188_122512_+	hypothetical protein	NA	NA	NA	NA
WP_032720638.1\|124671_124995_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_032720637.1\|125043_125346_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_153591440.1\|125388_125556_-	hypothetical protein	NA	NA	NA	NA
WP_032720701.1\|125743_125923_-	hypothetical protein	NA	NA	NA	NA
WP_032720636.1\|125946_126330_-	hypothetical protein	NA	NA	NA	NA
WP_032720635.1\|126434_127007_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_032720700.1\|127008_127797_-	TSUP family transporter	NA	NA	NA	NA
WP_050548604.1\|127832_128753_-	hypothetical protein	NA	NA	NA	NA
WP_044266755.1\|129055_129550_-	hypothetical protein	NA	NA	NA	NA
WP_044266753.1\|129580_130153_-	hypothetical protein	NA	NA	NA	NA
WP_060579400.1\|130149_130398_-	hypothetical protein	NA	NA	NA	NA
WP_058650054.1\|130963_131308_+	hypothetical protein	NA	NA	NA	NA
WP_016338367.1\|131415_132051_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_016338368.1\|132050_134159_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	2.4e-38	27.3
WP_016338369.1\|134148_135426_-	HlyD family secretion protein	NA	NA	NA	NA
WP_048983057.1\|137002_137419_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_016338373.1\|137415_137646_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001407551.1\|138290_139307_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.4e-187	100.0
WP_032249507.1\|139316_139985_-	response regulator transcription factor	NA	NA	NA	NA
WP_077265821.1\|140182_141151_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	7.7e-173	91.9
WP_001542733.1\|141480_141777_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_032677266.1\|142356_145890_-	DEAD/DEAH box helicase	A0A076FHE1	Aureococcus_anophage	2.7e-18	26.1
WP_000248889.1\|145873_146653_-	DUF1837 domain-containing protein	NA	NA	NA	NA
WP_000770925.1\|147308_148145_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_060579401.1\|148141_149791_-	metallophosphoesterase	NA	NA	NA	NA
WP_023300121.1\|149968_153091_-	hypothetical protein	NA	NA	NA	NA
WP_004016055.1\|153191_154625_-	restriction endonuclease	NA	NA	NA	NA
WP_000619352.1\|154645_155449_-	TIGR02391 family protein	A0A1S5SBU1	Streptococcus_phage	2.6e-33	36.0
WP_085929673.1\|155649_156818_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012989

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

724 : 57690

uncultured_Caudovirales_phage(30.77%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077251107.1\|724_2071_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_004187044.1\|2281_2764_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003026799.1\|2751_3018_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_060579418.1\|3168_3873_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	6.9e-139	99.6
WP_004187040.1\|4031_6617_-	EAL domain-containing protein	G3MA91	Bacillus_virus	3.5e-23	36.2
WP_032238678.1\|6585_6831_-	hypothetical protein	NA	NA	NA	NA
WP_004152113.1\|8245_9208_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_004187033.1\|9194_9944_-	diguanylate cyclase	NA	NA	NA	NA
WP_004152116.1\|10378_13174_-	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
WP_004152117.1\|13279_13849_-	small heat shock protein sHSP20	NA	NA	NA	NA
WP_013307885.1\|13883_14165_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	6.8e-05	38.2
WP_004118208.1\|14408_14672_-	hypothetical protein	NA	NA	NA	NA
WP_004187027.1\|14686_14950_+\|transposase	transposase	NA	NA	NA	NA
WP_004187025.1\|15912_16161_+	plasmid stabilization protein	NA	NA	NA	NA
WP_004187019.1\|16150_16435_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	6.4e-19	55.9
WP_004187017.1\|16450_17806_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_004187015.1\|17848_18349_-	hypothetical protein	NA	NA	NA	NA
WP_004187010.1\|20751_21216_+	hypothetical protein	NA	NA	NA	NA
WP_004187005.1\|22674_24420_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_004181711.1\|24419_26003_-	5-oxoprolinase/urea amidolyase family protein	NA	NA	NA	NA
WP_004187003.1\|26015_26822_-	putative hydro-lyase	NA	NA	NA	NA
WP_004181708.1\|26818_27592_-	LamB/YcsF family protein	NA	NA	NA	NA
WP_004181707.1\|27600_28845_-	divalent metal cation transporter	NA	NA	NA	NA
WP_004181705.1\|29184_29835_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_100206809.1\|30614_32069_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_004186999.1\|32109_32946_-	DUF1989 domain-containing protein	NA	NA	NA	NA
WP_004186998.1\|32945_33668_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_004186997.1\|33677_35186_-	amino acid ABC transporter permease/ATP-binding protein	G9BWD6	Planktothrix_phage	7.6e-34	39.2
WP_004186996.1\|35210_36026_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096810283.1\|37363_38530_+\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.1e-178	95.8
WP_000427619.1\|40165_41170_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_032742905.1\|41248_44233_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	9.9e-304	54.1
WP_008502231.1\|44392_44977_+	recombinase family protein	A0A219YA40	Aeromonas_phage	2.6e-22	36.1
WP_000108589.1\|45161_45719_+	OsmC family protein	NA	NA	NA	NA
WP_023304048.1\|45860_46442_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000888080.1\|46446_46785_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_031591986.1\|46814_47144_-	thioredoxin family protein	V9SJ74	Achromobacter_phage	4.3e-11	33.7
WP_060579419.1\|47356_48463_+	alkene reductase	NA	NA	NA	NA
WP_031591983.1\|48528_49230_+	DsbA family oxidoreductase	NA	NA	NA	NA
WP_004729618.1\|49295_50069_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_031591991.1\|51780_52206_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	6.1e-50	70.0
WP_031591992.1\|52218_53508_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	3.5e-173	74.0
WP_031591994.1\|53554_55306_-	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_031591995.1\|55322_55685_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_031591996.1\|55732_56086_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	6.9e-23	49.1
WP_000427619.1\|56685_57690_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP012987

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012987_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012987_1

279513-279607

Orphan

Consensus_repeat	Method
TGCACTACCCCCTGGTGAATCTCCTGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012987_1

>merge|NZ_CP012987|1|279513-279607|CRISPRCasFinder
TGCACTACCCCCTGGTGAATCTCCTGCACCAGGTAGTGAATCTGTTGCACCAGGTAGTGAACGATTTGCACTACCCCCTGGTGAATCTCCTGCAC

>NZ_CP012987|1|1|279513-279607|CRISPRCasFinder
TGCACTACCCCCTGGTGAATCTCCTGCAC	CAGGTAGTGAATCTGTTGCACCAGGTAGTGAACGATT
TGCACTACCCCCTGGTGAATCTCCTGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012987.1\|WP_023328640.1\|276775_278155_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273206
NZ_CP012987.1\|WP_004190674.1\|272610_272955_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_049109614.1\|278151_279030_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181180
NZ_CP012987.1\|WP_004190672.1\|272338_272614_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237177
NZ_CP012987.1\|WP_019705432.1\|280132_280360_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP012987.1\|WP_049109620.1\|275862_276339_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_071717307.1\|274313_274637_-\|four-helix-bundle-copper-binding-protein	unknown	unknown	gnl\|CDD\|153434
NZ_CP012987.1\|WP_019705434.1\|281350_281659_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_019705436.1\|282013_282238_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_049109615.1\|276420_276789_-\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|377564
NZ_CP012987.1\|WP_004218017.1\|282442_282604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_040186816.1\|282596_282851_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_031280382.1\|273487_273787_-\|holin	unknown	unknown	gnl\|CDD\|374352
NZ_CP012987.1\|WP_004184488.1\|272951_273491_-\|glycoside-hydrolase-family-108-protein	unknown	unknown	gnl\|CDD\|226439
NZ_CP012987.1\|WP_004146412.1\|282918_283041_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_049109622.1\|275083_275866_-\|molecular-chaperone	unknown	unknown	gnl\|CDD\|367572
NZ_CP012987.1\|WP_004152156.1\|283037_283463_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_023328643.1\|280484_281192_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP012987.1\|WP_019705435.1\|281648_281843_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_032430925.1\|279868_280057_-\|DUF4222-domain-containing-protein	unknown	unknown	gnl\|CDD\|372855

Protein	Function_ID	Function_description	E-value
NZ_CP012987.1\|WP_031280382.1\|273487_273787_-\|holin	gnl\|CDD\|374352	pfam16083, Phage_holin_3_3, LydA holin phage, holin superfamily III. Phage_holin_3_3 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as those of the bacteriophages of these organisms. Their primary function appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded, these enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases. LydA and lydB are encoded on the dar operon. The phenotype of a rapid lysis in the absence of active LydB suggests that this protein might be an antagonist of the holin LydA.	1.86067e-15
NZ_CP012987.1\|WP_019705432.1\|280132_280360_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	1.33832e-19
NZ_CP012987.1\|WP_023328640.1\|276775_278155_-\|AAA-family-ATPase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	3.25684e-106
NZ_CP012987.1\|WP_049109614.1\|278151_279030_-\|ATP-binding-protein	gnl\|CDD\|181180	PRK07952, PRK07952, DNA replication protein DnaC; Validated.	4.04914e-37
NZ_CP012987.1\|WP_004190672.1\|272338_272614_-\|hypothetical-protein	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0.00116546
NZ_CP012987.1\|WP_049109615.1\|276420_276789_-\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|377564	pfam05866, RusA, Endodeoxyribonuclease RusA. This family consists of several bacterial and phage Holliday junction resolvase (RusA) like proteins. The RusA protein of Escherichia coli is an endonuclease that can resolve Holliday intermediates and correct the defects in genetic recombination and DNA repair associated with inactivation of RuvAB or RuvC.	2.23959e-11
NZ_CP012987.1\|WP_004184488.1\|272951_273491_-\|glycoside-hydrolase-family-108-protein	gnl\|CDD\|226439	COG3926, zliS, Lysozyme family protein [General function prediction only].	1.31966e-44
NZ_CP012987.1\|WP_032430925.1\|279868_280057_-\|DUF4222-domain-containing-protein	gnl\|CDD\|372855	pfam13973, DUF4222, Domain of unknown function (DUF4222). This short protein is likely to be of phage origin. For example it is found in the Enterobacteria phage YYZ-2008. It is largely found in enteric bacteria. The molecular function of this protein is unknown.	2.10618e-15
NZ_CP012987.1\|WP_071717307.1\|274313_274637_-\|four-helix-bundle-copper-binding-protein	gnl\|CDD\|153434	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria. This functionally uncharacterized protein forms a 4-helical bundle with a bromodomain-like topology. It is present in major bacterial lineages and contains highly conserved cysteines in a repeated pattern, whose sidechains appear buried. Some family members have been (mis)annotated as putative ferredoxins.	1.8834e-29
NZ_CP012987.1\|WP_023328643.1\|280484_281192_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	2.01457e-35
NZ_CP012987.1\|WP_049109622.1\|275083_275866_-\|molecular-chaperone	gnl\|CDD\|367572	pfam03589, Antiterm, Antitermination protein.	4.51188e-28

>NZ_CP012987.1|WP_049109614.1|278151_279030_-|ATP-binding-protein
MLNLNQLKEREDLRAQQAKLGDELAFAEEHKLPWGFEGYNSNHTSMASCPEHGDYEQFTLVGKDFRGAETFKHSRCPSCIRAEQTSVKSSLRKLHVTSLLNDAGITRRFGDCEFENYLELNPEASRNLAACRRYADNWPAVLEAGKSLVLTGSCGTGKNHLAVSLAKSIIRNHLASVELTDVMRLTRAVKSTWRHNAETTEESVLDHYSSLDLLVIDEVGVQFGSPAEMTILHEVINARYESVLPTILISNLPPEQLKEFISDRIFDRVTDGGRNYLVFNWASFRGNNGGHA
>NZ_CP012987.1|WP_023328640.1|276775_278155_-|AAA-family-ATPase
MTPVWRNDELEEAVIGALFLRGDDPEVLDVLSRLPASTFSVRQYREIYTGICRQARGGGVIDPLLLCESLPALQTTILAATRVSWAKSALLSYVDVLRRNAGVRDAEAALEKVLEQIRSARNGESALAALEAAKLTVSAIDISADTVQPVHISELLTAVADEVESRSQGKEETRCLLTGIEELDAMTGGIESTDLVFIAARPSMGKTELALDIIDKVSAQGHGVLFFSMEMSDTQITKRMVSAAGGMSMSRLKAVDKFEDEDWARFFNGMERMATRNIWITDATGLTIDQIQQTATRYQIAHPEIALVVIDYLALIKIQSTARYDLAVGEVSKGLKNLAKSNKTPVLALSQLSRGVESRPNKRPMNSDMKNSGEIEADADLILMLYRDEVYNPESPAKGIAEINVTKQRNGELGTIYRRFYNGHFLPIDQEEARQRSTPQPKAHQRRYTKGSRAGHEDF
>NZ_CP012987.1|WP_049109615.1|276420_276789_-|RusA-family-crossover-junction-endodeoxyribonuclease
MKIFNITPMGKPRMTRADKWKQREVVMRYRAFCDEVRLKNVAMPEQGGHITFVVPMPKSWSQKKRVTMNGQAHQQKPDADNMIKALMDALFTDDAHIWDFRVTKRWGESGQILISDIGEVAA
>NZ_CP012987.1|WP_049109620.1|275862_276339_-|hypothetical-protein
MRSNNNEHNKYFSVDAGISSETITKAERLVMERYSNMYSNWKEKEKNYRQEVEDLRQKEIAGFKNILPAPFTLSDVTIEWDYWESVLRHRYKTQNGDGYVQIIWDRRGWHTDLLCVMKPVTRAEALTVCKWLLACDYFEERDSLFDRIILNLVGECEE
>NZ_CP012987.1|WP_049109622.1|275083_275866_-|molecular-chaperone
MKLEASLKHFSPQGMHISDDVKSTSPNRLTGTDVMAAIGTTSSRARFGLAAFLGKAGISKTDEQLAIQALAQFAIKNAPKNVRKAAGDKLAACMLTLAQFAFAEYSRSAATRATCQSCSGTGFISRHEDVIKHPGIFDADGVEVKAPKIRNELVKRVCGVCGGKKVIHARCRCSGKGEVLDRKATKELGAPVFKTCERCSGNGFSVVPSATVHRAILKRLPDLHQSSWSRNWKPFYEGLVDTLHKGERQAAAEFEKATCY
>NZ_CP012987.1|WP_071717307.1|274313_274637_-|four-helix-bundle-copper-binding-protein
MPVNYAECIEVCYKCATACDYCAASCLKEEQVDMMRECIRLDMQCANICRLAAQFMTLDSEFAKSLCQVCAEICQKCGEECGKHEAEHCQKCSEACLRCAETCRSMV
>NZ_CP012987.1|WP_031280382.1|273487_273787_-|holin
MQDKESIAGMSWLVLLIIACWGGLVRYLIDVKQSKATWSLINALAQMVVSGFTGVIAGLVSIESGLSIYMILATSGISGAMGSVALTYFWERITGVKAP
>NZ_CP012987.1|WP_004184488.1|272951_273491_-|glycoside-hydrolase-family-108-protein
MTADQIIEGILGKEGGYVDHPSDKGGPTRWGITQTTARAHGYTGDMRNLPRETAKQILLSDYWTGPRFDQVAALSTLLADELCDTGVNMGPSVASKFFQRWLTAMNMRGKLYPDLIPDGAIGPRTITALKGYLSARGKEGEQVLLRALNCSQGARYLELAEGREANEDFLYGWVKERVL
>NZ_CP012987.1|WP_004190674.1|272610_272955_-|hypothetical-protein
MKMIIFALLVLVAVLVLLLLRKYTRLEFVGHASLLLKTWSVKLGAIGALVGVWAQSFPDAALHAWAVLPPDIKNILPPNIVALISPALVVLAVLSQYVRQPALKEKADELKEQQ
>NZ_CP012987.1|WP_004190672.1|272338_272614_-|hypothetical-protein
MSFEIIAGLVVVILGAIAGAFGIGHARGASKAKAKADQQRTEENAAATVAAAERRAEVTKGASDVQEDVKRMGDDDVDRELREKFTRPGSR
>NZ_CP012987.1|WP_032430925.1|279868_280057_-|DUF4222-domain-containing-protein
MFPEAGSIKALDRLYHDPRGVVVHVTGWDREKQQVYFTRPDYPHECMQPVWKFQQYFTRVLV
>NZ_CP012987.1|WP_019705432.1|280132_280360_-|helix-turn-helix-domain-containing-protein
MISEPIDKAIRCTGSQGALAKQCGVSQATVWKWRHGKRVKAEHVLKIVAAANGQVAAYEIRPDLPELFPHPTQGE
>NZ_CP012987.1|WP_023328643.1|280484_281192_+|helix-turn-helix-transcriptional-regulator
MSKTTFAERLVESMKAAGFTQASLAAAVGMSQSSIWKLTSGAASGSRKTVELAKALHVRPEWLASGELPMNDNESNDLPTVYRQQRPVDPGIYRVDLLDVQVSAGPGVYLSSEFIKTVQAIEFTEEYARSMFGSRPASSIKVITVRGDSMEGTIDPGDYIFVDTSVNHFEGDGIYVFVFGKTIHIKRLQMQKNSLVVLSDNKLYSPWEIDACDEDQFHVLAKVLVKQSAAFKRFA
>NZ_CP012987.1|WP_019705434.1|281350_281659_+|hypothetical-protein
MATKNFIQLVDIPDYRFDKRATDIDYDGIACDCDSKTISILNAISHISLNVFSLVEESLVDKEKIADLSCIIADLAELAIATNKISQSASYLSGLKGDNNGA
>NZ_CP012987.1|WP_019705435.1|281648_281843_+|hypothetical-protein
MAHEISLEQAAEKAHQAEIICRMMEVYPNKMDCTEIEALSSLLRVLTGDVCAWLIEEQAVKNNK
>NZ_CP012987.1|WP_019705436.1|282013_282238_+|hypothetical-protein
MSIQRRQDIQCVTIKAEQLNFLMQTIFTHHKDFDCHQLDGVLGLAYDLAGEVYSWMEKEEKIVQQNEEHKRRGN
>NZ_CP012987.1|WP_004218017.1|282442_282604_+|hypothetical-protein
MKALKGIYSNSVDVNGSGEFLTESGKELIDELISELVEFVKKQKPVTAESGNE
>NZ_CP012987.1|WP_040186816.1|282596_282851_+|hypothetical-protein
MNNQQTMLYQGVLIPRPVLNVDLHVHPDFTGRVVVHIENGRVICDHQLFDDEHICTLATFIEMAREMELRLEEVAGGTDSNTNS
>NZ_CP012987.1|WP_004146412.1|282918_283041_+|hypothetical-protein
MRRTGYLSLKVNPRWRLLSKDDGRNWEVMSHETYNREKDK
>NZ_CP012987.1|WP_004152156.1|283037_283463_+|hypothetical-protein
MIDNRTVSAIDLALQKHPTPVGDLFAAIRHGRMKRCFSRDTAIRYLAFFMTSRAFGRSGFKQRYPDVQVIHPLNPELSSWQRGAVTTEYFNAHQRTVRRLRRILARKREMQKWCKKWDAMHDRYVKEREELQACKPGGLSR

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Crispr_ID: NZ_CP012987_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012987_2

1091483-1091566

Orphan

Consensus_repeat	Method
GGCGTCTGACGCCTTGCCCGGCCTACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012987_2

>merge|NZ_CP012987|2|1091483-1091566|CRISPRCasFinder
GGCGTCTGACGCCTTGCCCGGCCTACGGTGCTATTGCGCGGTTATTTTTGCCGGGTGGCGGCTGACGCCTTGCCCGGCCTACGG

>NZ_CP012987|2|2|1091483-1091566|CRISPRCasFinder
GGCGTCTGACGCCTTGCCCGGCCTACGG	TGCTATTGCGCGGTTATTTTTGCCGGGT
GGCGGCTGACGCCTTGCCCGGCCTACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012987.1\|WP_002895648.1\|1085622_1086345_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP012987.1\|WP_162779372.1\|1098676_1099996_-\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP012987.1\|WP_002895358.1\|1096936_1097662_-\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NZ_CP012987.1\|WP_023283460.1\|1080880_1081978_+\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751
NZ_CP012987.1\|WP_004191259.1\|1103068_1103575_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_002895652.1\|1084659_1084872_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_049006320.1\|1087076_1088234_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP012987.1\|WP_002895580.1\|1088230_1089271_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP012987.1\|WP_004152853.1\|1084958_1085681_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP012987.1\|WP_040217512.1\|1082226_1084248_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP012987.1\|WP_002895575.1\|1090844_1091321_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP012987.1\|WP_012737677.1\|1093582_1095109_-\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP012987.1\|WP_004142100.1\|1086337_1087093_-\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP012987.1\|WP_009483834.1\|1103779_1103926_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_016947182.1\|1097723_1098680_-\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NZ_CP012987.1\|WP_004176805.1\|1089484_1090774_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP012987.1\|WP_014342949.1\|1095105_1096044_-\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP012987.1\|WP_002895284.1\|1102128_1103052_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225813
NZ_CP012987.1\|WP_004147672.1\|1092101_1093484_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP012987.1\|WP_004142122.1\|1100150_1101434_+\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709

Protein	Function_ID	Function_description	E-value
NZ_CP012987.1\|WP_002895648.1\|1085622_1086345_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
NZ_CP012987.1\|WP_162779372.1\|1098676_1099996_-\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP012987.1\|WP_002895358.1\|1096936_1097662_-\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NZ_CP012987.1\|WP_002895580.1\|1088230_1089271_-\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP012987.1\|WP_049006320.1\|1087076_1088234_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP012987.1\|WP_004152853.1\|1084958_1085681_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
NZ_CP012987.1\|WP_023283460.1\|1080880_1081978_+\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NZ_CP012987.1\|WP_040217512.1\|1082226_1084248_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP012987.1\|WP_002895575.1\|1090844_1091321_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
NZ_CP012987.1\|WP_012737677.1\|1093582_1095109_-\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP012987.1\|WP_004142100.1\|1086337_1087093_-\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.7976e-160
NZ_CP012987.1\|WP_016947182.1\|1097723_1098680_-\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	3.52157e-177
NZ_CP012987.1\|WP_004176805.1\|1089484_1090774_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP012987.1\|WP_014342949.1\|1095105_1096044_-\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP012987.1\|WP_002895284.1\|1102128_1103052_+\|acyltransferase-family-protein	gnl\|CDD\|225813	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only].	6.63632e-09
NZ_CP012987.1\|WP_004147672.1\|1092101_1093484_-\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP012987.1\|WP_004142122.1\|1100150_1101434_+\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0

>NZ_CP012987.1|WP_002895575.1|1090844_1091321_+|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NZ_CP012987.1|WP_004176805.1|1089484_1090774_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVASESLRLLESGEWQPQVAAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMAALQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NZ_CP012987.1|WP_002895580.1|1088230_1089271_-|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NZ_CP012987.1|WP_049006320.1|1087076_1088234_-|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHQAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGQQRRDILAARIRQFREGMGEVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHAEDINRLLEVLHGHSE
>NZ_CP012987.1|WP_004142100.1|1086337_1087093_-|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NZ_CP012987.1|WP_002895648.1|1085622_1086345_-|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NZ_CP012987.1|WP_004152853.1|1084958_1085681_+|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>NZ_CP012987.1|WP_002895652.1|1084659_1084872_+|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>NZ_CP012987.1|WP_040217512.1|1082226_1084248_-|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRHLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP012987.1|WP_023283460.1|1080880_1081978_+|two-component-system-sensor-histidine-kinase-PmrB
MALFATETWTMRHRLLLTIGAILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTSISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLTDIENEAVVSGDATLIRVILRNLVENAHRYSPEGSTIRVSVKAGLLPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH
>NZ_CP012987.1|WP_004147672.1|1092101_1093484_-|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NZ_CP012987.1|WP_012737677.1|1093582_1095109_-|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRGGDWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NZ_CP012987.1|WP_014342949.1|1095105_1096044_-|urocanate-hydratase
MKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NZ_CP012987.1|WP_002895358.1|1096936_1097662_-|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NZ_CP012987.1|WP_016947182.1|1097723_1098680_-|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIARAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEVAHQALREAVADCQRAGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAALRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLATLLRIVEPLCRSGKLQAVDLVEFNPLFDIDGQGARAAARVAWQIAHWWR
>NZ_CP012987.1|WP_162779372.1|1098676_1099996_-|imidazolonepropionase
MVFNHKKITFPCAIVDFTGVMKINVYTTHDKLSAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERQLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDADGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASLHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NZ_CP012987.1|WP_004142122.1|1100150_1101434_+|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NZ_CP012987.1|WP_002895284.1|1102128_1103052_+|acyltransferase-family-protein
MTAVTFFTIYNTWDRFDYDYHWILGLLTFISTIATPLFFVVAGYLDAQTRHDANWQIGKIKSVVIVFLFWVTVYYVWEPYQRGYLIQPWFIFALIVIYTFHPLIAWLSQRRGLFFAVLLTLLCCSYGYDLLSVIYPDRHLFSLPPQYRLWTWLLFYLTGQLFNDPKVAEWIRNPQVIKGSIIALPFVYLFTWFYERHFFFALFKADRNAFILTGSQIYILIVLLVIAANAVQFKKNREWKEAVLATVSKAMTGVYILHYSVFHLLVMLIPVHSLATKLGVIALTFVLSVLISLAALSSTLLRKVITL
>NZ_CP012987.1|WP_004191259.1|1103068_1103575_-|hypothetical-protein
MRGKSVMLLAGLASLAQANELNLYSVNTGSYVYHLTNNHGQYTENFENHFFSVERKFSADSKYSLLLGTMNNSFNDRCLALGVRRDWYHSGSGWTFKGVYGYTGEFFFDAFEHCGDHGSYKDFKDATGIGFSPYIYHAIQYNFTDYFAVESGIIIPSVFVISIQLSFR
>NZ_CP012987.1|WP_009483834.1|1103779_1103926_-|hypothetical-protein
MAGEMHEIAPTREGVNSNAVVDRWLSSASESEHSGKYDEALSAFCTVR

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Crispr_ID: NZ_CP012987_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012987_3

1378986-1379109

Orphan

Consensus_repeat	Method
AGGCCCGGTAAGCGCAGCGCCACCGGGCGATGCTATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012987_3

>merge|NZ_CP012987|3|1378986-1379109|CRISPRCasFinder
AGGCCCGGTAAGCGCAGCGCCACCGGGCGATGCTATCAGGCACAGAGCCGCTTTATTGCCGGGGCCCTCACAGGCTCACACCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCGATGCCATCA

>NZ_CP012987|3|3|1378986-1379109|CRISPRCasFinder
AGGCCCGGTAAGCGCAGCGCCACCGGGCGATGCTATCA	GGCACAGAGCCGCTTTATTGCCGGGGCCCTCACAGGCTCACACCCCGT
AGGCCCGGTAAGCGCAGCGCCACCGGGCGATGCCATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012987.1\|WP_049006330.1\|1384691_1385810_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238559
NZ_CP012987.1\|WP_048299244.1\|1369393_1369936_+\|DUF3156-family-protein	unknown	unknown	gnl\|CDD\|371486
NZ_CP012987.1\|WP_002892699.1\|1384030_1384420_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_012737575.1\|1383116_1383254_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_060579230.1\|1374233_1375421_+\|anaerobic-sulfatase-maturase	unknown	unknown	gnl\|CDD\|188457
NZ_CP012987.1\|WP_049005950.1\|1371834_1373007_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP012987.1\|WP_009484101.1\|1377286_1378063_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP012987.1\|WP_049005947.1\|1375465_1377199_+\|arylsulfatase	unknown	unknown	gnl\|CDD\|293749
NZ_CP012987.1\|WP_009484102.1\|1378088_1378880_+\|molybdenum-cofactor-biosynthesis-protein-F	unknown	unknown	gnl\|CDD\|375179
NZ_CP012987.1\|WP_004142626.1\|1384480_1384600_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_016831715.1\|1383216_1383342_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_074187751.1\|1385871_1386900_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223682
NZ_CP012987.1\|WP_009484235.1\|1379844_1380798_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381307
NZ_CP012987.1\|WP_002892701.1\|1383406_1383862_-\|RcnB-family-protein	unknown	unknown	gnl\|CDD\|378715
NZ_CP012987.1\|WP_002892707.1\|1380926_1381703_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270421
NZ_CP012987.1\|WP_009308087.1\|1373124_1373808_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP012987.1\|WP_004178884.1\|1370316_1370619_-\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|378301
NZ_CP012987.1\|WP_032433107.1\|1369953_1370313_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227786
NZ_CP012987.1\|WP_004176999.1\|1381722_1382901_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349916
NZ_CP012987.1\|WP_032435543.1\|1370702_1371818_-\|class-II-histone-deacetylase	unknown	unknown	gnl\|CDD\|212521

Protein	Function_ID	Function_description	E-value
NZ_CP012987.1\|WP_048299244.1\|1369393_1369936_+\|DUF3156-family-protein	gnl\|CDD\|371486	pfam11354, DUF3156, Protein of unknown function (DUF3156). This family of proteins with unknown function appears to be restricted to Proteobacteria.	2.10862e-73
NZ_CP012987.1\|WP_060579230.1\|1374233_1375421_+\|anaerobic-sulfatase-maturase	gnl\|CDD\|188457	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme. Members of this protein family are radical SAM family enzymes, maturases that prepare the oxygen-sensitive radical required in the active site of anaerobic sulfatases. This maturase role has led to many misleading legacy annotations suggesting that this enzyme maturase is instead a sulfatase regulatory protein. All members of the seed alignment are radical SAM enzymes encoded next to or near an anaerobic sulfatase. Note that a single genome may encode more than one sulfatase/maturase pair. [Protein fate, Protein modification and repair].	9.84304e-167
NZ_CP012987.1\|WP_049005950.1\|1371834_1373007_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.43816e-12
NZ_CP012987.1\|WP_009484101.1\|1377286_1378063_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.16403e-62
NZ_CP012987.1\|WP_049005947.1\|1375465_1377199_+\|arylsulfatase	gnl\|CDD\|293749	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	7.64631e-175
NZ_CP012987.1\|WP_009484102.1\|1378088_1378880_+\|molybdenum-cofactor-biosynthesis-protein-F	gnl\|CDD\|375179	pfam17409, MoaF_C, MoaF C-terminal domain. MoaF protein is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha. It is conserved in Proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis. This entry corresponds to the C-terminal domain.	2.96089e-63
NZ_CP012987.1\|WP_049006330.1\|1384691_1385810_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238559	cd01139, TroA_f, Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	2.37252e-98
NZ_CP012987.1\|WP_074187751.1\|1385871_1386900_+\|iron-ABC-transporter-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	3.53046e-76
NZ_CP012987.1\|WP_009484235.1\|1379844_1380798_-\|aldo/keto-reductase	gnl\|CDD\|381307	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR). Haloferax volcanii aldo-keto reductase is a founding member of aldo-keto reductase family 9 member C1 (AKR9C1).	4.13727e-161
NZ_CP012987.1\|WP_002892701.1\|1383406_1383862_-\|RcnB-family-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	2.00361e-17
NZ_CP012987.1\|WP_002892707.1\|1380926_1381703_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270421	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold. This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.0348e-114
NZ_CP012987.1\|WP_009308087.1\|1373124_1373808_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	8.96904e-18
NZ_CP012987.1\|WP_004178884.1\|1370316_1370619_-\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	2.47583e-38
NZ_CP012987.1\|WP_032433107.1\|1369953_1370313_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	1.86148e-37
NZ_CP012987.1\|WP_004176999.1\|1381722_1382901_-\|amidohydrolase	gnl\|CDD\|349916	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP012987.1\|WP_032435543.1\|1370702_1371818_-\|class-II-histone-deacetylase	gnl\|CDD\|212521	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII. This subfamily includes bacterial as well as eukaryotic Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Included in this family is a bacterial HDAC-like amidohydrolase (Bordetella/Alcaligenes species FB18817, denoted as FB188 HDAH) shown to be most similar in sequence and function to class II HDAC6 domain 3 or b (HDAC6b). FB188 HDAH is able to remove the acetyl moiety from acetylated histones, and can be inhibited by common HDAC inhibitors such as SAHA (suberoylanilide hydroxamic acid) as well as class II-specific but not class I specific inhibitors.	0

>NZ_CP012987.1|WP_009484102.1|1378088_1378880_+|molybdenum-cofactor-biosynthesis-protein-F
MTSEAVFIQVGALADGFAPHGNLLATASLPAGENFTFYVAGSEPQQLVIEDEQTLSWNGKRAPWRATALRPDILFIDFLDPERDNASISAVCNLTQRNATLVYGQLPDEAAARLDAFSRVEQGLPLTAVEARFVFARLDAQPGPLPDFTTALVGMRNQYTYSPTERYEHIYLNDNFYAWQCLDGVEKGLADVDRCHYVQVAEDLYLFVWREKIIPTLGVILIDLQQMRTDGKIMGYQGSDFGALSNFPVGASAKILNVTRHQE
>NZ_CP012987.1|WP_009484101.1|1377286_1378063_+|SDR-family-oxidoreductase
MARVVVITGGGTGIGAACARLMRAAGDRVFITGRREAPLQAVADETGATALVGDAADGEVWRQRLLPTILDQTGGIDVLICSAGGMGNSPAADTSDRQWREALDANLNSAFVSVRACLPSLIACRGNVLFVASIASLAAGPQACGYVTAKHALIGLMRSIARDYGPQGVRANAICPGWVTTPMADEEMIPLMQEHGLSLTEAYQRVCRDVPLRRPASPEEIAQACQFLCSPQAAIISGATLVADGGASIVDVPTLAFA
>NZ_CP012987.1|WP_049005947.1|1375465_1377199_+|arylsulfatase
MNKKAMAAAVSMILAGGAHAAQQERPNVIVIIADDMGYSDISPFGGEIPTPNLQAMAEQGMRMSQYYTSPMSAPARSMLLTGNSNQQAGMGGMWWYDSTIGKEGYELRLTDRVTTMAERFKNAGYNTLMAGKWHLGFVPGATPKDRGFNHAFAFMGGGTSHFNDAIPLGTVEAFHTYYTRDGERVSLPDDFYSSEAYARQMNSWIKATPKEQPVFAWLAFTAPHDPLQAPDEWIKRFKGQYEQGYAEVYRQRIARLKALGIIHDDTPLPHLELDKEWEALTPEQQKYTAKVMQVYAAMIANMDAQIGTLMETLKQTGRDKNTLLVFLTDNGANPAQGFYYESTPEFWKQFDNSYDNVGRKGSFVSYGPHWANVSNAPYANYHKTTSAQGGINTDFMISGPGITRHGKIDASTMAVYDVAPTLYEFAGIDPNKSLAKKPVLPMIGVSFKRYLTGEVQEPPRGNYGVELHHQAAWVDGEWKLRRLVPRGLTAGDAPWQLFNLHDDPLETHDVAAEHPDRVKAMSEAYEAFAKRTMVTKAQGKMIDYVGIDSKTGRYLAVDPATMKPVPAPQAIPVSEIH
>NZ_CP012987.1|WP_060579230.1|1374233_1375421_+|anaerobic-sulfatase-maturase
MLNIAALRQQQIPLAAEPRSPVPFHILMKPIGPACNLACRYCYYPQDETPVNKMDDARLEQFIRRYIAAQPAGAREINFVWQGGEPLLAGLSFYKKALALQARYAPDGVTISNSLHTNGTLINDAWCRLFREHGFIIGLSLEGNEALQDYHRPDKRGRSTWSAALRGIDLLHQHQVDFNLLVVVHNEMAAHAAAIYDRLVSLGARYLQFQPLMSEGAALREGYQLSADNWGRFMVGIWRQWRKRCDRGRVFVINIEQAWAQYFTHTSGSCVHSARCGSNLVMEPDGQLYACDHLINAEHRLGRLDEQTLAAAVDASVQLPFGQQKSLRRECQTCSVKMVCQGGCPAHLNAAGNNRLCGGYYRFFSDILAPLRPFSRDLNGLKAWRAAFVGTAHTA
>NZ_CP012987.1|WP_009308087.1|1373124_1373808_-|LuxR-family-transcriptional-regulator
MSALLKASHNDAIIARCLQTISQLIPLTSAVFYRVNNRLKPENYILHNISDNTHQQYLENFQPLDPLLPSHFSHQNTTVAAMTPRLCDRNRHYYHEFMLPNNVRDMTEIFIRRERRIVAGISLMRDVPFSSEERQRAQAVLPLVELAIRDCLQEEDDLPAILTAKEREIVGMVREGASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSRTWMPAAQRTLHL
>NZ_CP012987.1|WP_049005950.1|1371834_1373007_-|MFS-transporter
MSSTPLTENALSRPAGLVVSLRLLAAIVIFAAIAPGILMTAPAVAAQLASEWQLKPGQIGWLFSAELGAMSLATLPAWWWMSRLDWRRVALTAGVVFLAANLASAVVTQYETLLAARFIASLAGGTLMILCISCAAGTPNPSRVYAFWVLGQLLLGMLGLLALPGLFATFGLKVVYLILAAIMLCCLPLVSAFPPRFQPLSVFRQQPSTALWRQALAVLAVLTFYISLSAVWTFIGTIGSAAGLSPTQVGLVLAAATVCGIIGAGGAALRGTRRADRLPVWLGYGLLIVSVGLLIGQPLLVRYAIAALLFKFTWTFVLPFILARVAGLDNSGRLMNSINLVIGGGMAAGPALAGALLQHFASADPLLAAAGVCALLSLILIVAASAAGKA
>NZ_CP012987.1|WP_032435543.1|1370702_1371818_-|class-II-histone-deacetylase
MKRKTGFFFDERCFWHSTGLHAVTLPVGGWVQPPAGGGHAESPETKRRMKNLMDVSGLTPQLALRSAAPASLEDLRRIHPDSYLERFKAISDNGGGMLGKEAPLGPGSYEIACLSAGLACAAVEAVLKGELDNAYSLSRPPGHHCLPDQSMGFCFLANIPIAVERAKAQLGLGKVAIIDWDVHHGNGTQHIYLQRDDVMTISLHQDGCFPPGYAGEDDRGVGAGEGYNINIPLLAGAGDDSWRYALETIVIPALARFEPELIIIACGYDANAMDPLARMQLHSDSFRAMTEQVQQAADRLCGGKLVMVHEGGYAESYVPFCGLAVMEALSGIRTEVQDPLLEFIQQQQPRATFAQFQRQAIDRLAQQFGLQ
>NZ_CP012987.1|WP_004178884.1|1370316_1370619_-|type-II-toxin-antitoxin-system-HigB-family-toxin
MKIISVKTLRDFWAENPDAEQPLKAWVDEATKADWKTPAEIKDQYRSASILKNKRVVFNIKGNDYRLIVAVAYLRGWVFVKFIGSHKEYDEINAETIERK
>NZ_CP012987.1|WP_032433107.1|1369953_1370313_-|helix-turn-helix-domain-containing-protein
MNVKPIRTEQDYEAALRAVEPFFDNEPAPDTPEGDFFEVMCLLIAEYEKKHYSIEPPTPIEAIKFRMEQQGLTVKDLEPAIGKSNRVYEILNGTRNLTLPMIRRLHAQFGIPLESLIGA
>NZ_CP012987.1|WP_048299244.1|1369393_1369936_+|DUF3156-family-protein
MSSVPWFETPLMNAVQRDLAGWPSEKLSERSALLRLNDATAVTFSVRQKRLFMASIHSCEFVVEGPVTRPARGKIRAHQSGWLKCLPIRFIGSKESAELAGYLNGFPNLQQTLSELDYRRFSLTFDDSGWRCGIEPWAASEVVCKMPPLRRYLRLEAQQRMLLLSVLAMINQAVRQWMHE
>NZ_CP012987.1|WP_009484235.1|1379844_1380798_-|aldo/keto-reductase
MMTRPLGKTGFSIAPLVFGGNVFGWTIDEKTSFALLDAFVDHGFDAIDTADVYSRWAEGNQGGESETIIGRWLQARPGMRDKVKIFTKVGSDLGLPGHKGLSKAWIQQAVDDSLRRLNTDYIDLYFSHWPDPQTPVAETLEAFHSLQQAGKIRAMGASNLDAMQLAGALEVARKGGLPAWQVLQPEYNLYHRSAFEGALCDLCVSRDIGVVTYYSLASGFLTGKYRQPSDLTQSQRGSGIGKYLNPRGMRIIDTLAAVADEQGVKPAEVALAWLIGREGVTAPIASATSVAQVESFARAAALSLSAEQVARLDGASA
>NZ_CP012987.1|WP_002892707.1|1380926_1381703_-|ABC-transporter-substrate-binding-protein
MKKSLLLWLALMASTSALAEGGKEIRFGVDPTFAPFEWKDPQGKLAGFDIDLGNAICQQLQAKCVWVESNFDGIIPALKARKFDAILSGMYMTEKRKAQIAFSDKLYNGPVFLVARKNTLQGNTPEQLKGKTIGVEQGSAQETYVNQHWRPQGINIVAYQGADSVVRDLESGRIDGAVLSGMMADYSFLQQPQGKEFAFVGGHLQDDTLFGAGAAIGLRKDDEALRQEINGAIAKILADGTYKKLAGKYFSFDVYSGT
>NZ_CP012987.1|WP_004176999.1|1381722_1382901_-|amidohydrolase
MSDYVIPEIKATEAEMISIRHYLHANPELSLEEFNTSELVASKLTEWGYQVTRGLGKTGVVGSLSKGDSPRTIGLRADMDALPIEETTGLPWASTAPGKMHACGHDGHTTILLAAAKYIASPACQFNGTVHLIFQPAEEAIGGADLMIKDGLFEQFPCERIFGLHNMPGLPVGKLGFYAGNFMASADTVKITITGYGGHGAHPERTVDPIVAGAALVMALQSIVARNVPPGETAVVSVGTFQAGIASNVIPESAVMELSVRAMKPEIRDLLIKRIHELADFTAKSYGASSVVEVYDSYPVLTNSPEETDFARALALEVFGREGVLESVSPMNASEDFAFMLRERPGSYFLLGNGEKGEKGGCMVHNPGYDFNDDIITIGATLFARLVEKHCR
>NZ_CP012987.1|WP_012737575.1|1383116_1383254_-|hypothetical-protein
MTFESNEAVSDATPLEAAAIGALQPASATIARRKSLCNCLPVYFI
>NZ_CP012987.1|WP_016831715.1|1383216_1383342_+|hypothetical-protein
MASDTASLLSKVNVYHLTEKELSTQATINGYKYWPDAALDP
>NZ_CP012987.1|WP_002892701.1|1383406_1383862_-|RcnB-family-protein
MKKMISLAVILSCVLSVPAFADGPNDGHRPGQPTVWQNGPDHDGHAPQGGPDAHHQGDHDQRGPDRDGHDKRDLARHEQDHFAWRGNDFRKGHPAPAPFRGDEYRVRDWSDRGLPPPPEGHHWSYIDGNYVLIAAATGIITSILVSGALGH
>NZ_CP012987.1|WP_002892699.1|1384030_1384420_-|hypothetical-protein
MKKAMIALSAILVAAPVFAATTHATDDTVAAANANANTAKEKLHQAQHEGEEQQLKAKHAAEGKQDSVGSQVSEGAQKTWNKTKEGTEKGWDKTKEVSEKGWNATKSGAEKGWDKTKTGAEELKNKVTE
>NZ_CP012987.1|WP_004142626.1|1384480_1384600_+|hypothetical-protein
MTLGISLKNVFDLQPWQKMLPPRAPCRRWHNFQHVCYIL
>NZ_CP012987.1|WP_049006330.1|1384691_1385810_+|ABC-transporter-substrate-binding-protein
MARKSVRSLLLTALLATPLLSYATQYPLTVTDLDGRQVTLAKEPQRIILQDGRDIMTLALLDRDNPFKRLVAWNNLAKKQDVATWQMLKTTWPQSATILDMGFSDKGNVDLESVIARQPDLMIAQLRARPALMESGVIDKLSALHVPLLFVDYEIDPAKDTAPSIDLLGKVLNRESQAKAFTDYYRQQLQSIRQKTATITPKANVFVEALAGNSDACCFTHGHSGWGGLVEAVGANNIGSQLLPGASGFVSLEKIISMKPDAWIMTGSKRGNSQVLPLGYAVKPEAVKAQAQTLLARPGVSQIPAVQEKRAYGVYHHFYNHPWNIVGMEYLAKDIYPQAFGDLNPDETYHYIVRHFTDLPDQPFVFSWQQSE
>NZ_CP012987.1|WP_074187751.1|1385871_1386900_+|iron-ABC-transporter-permease
MMDDYRRIVRRRLLLILLLALLIVASLLLDFMLGPSGLPLQSLWQTLTDPASADPGTRAIVWDIRLPYAVMAIIVGLALGLAGAEMQTILNNPLASPFTLGVSSAAAFGAALAIVLGIGLPGIPGQWFISANAFIFALLAALLLDGITRWTQVATSGVILFGIALVFTFNALVSMLQFIANEDTLQGLVFWTMGSIERASWSKVAILLVALALVMPLSLRSAWKLTALRLGEDRAISFGINVRRLRLTTLLRISILSALSVAFVGPIGFIGLVAPHIARMLFGEDHRFYLPASALIGALVLSLASIASKNLIPGAIIPVGIVTSLVGVPFFLSIILRHRGQV

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Crispr_ID: NZ_CP012987_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012987_4

1706139-1706278

Orphan

Consensus_repeat	Method
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012987_4

>merge|NZ_CP012987|4|1706139-1706278|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

>NZ_CP012987|4|4|1706139-1706278|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012987.1\|WP_004177331.1\|1698752_1699445_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
NZ_CP012987.1\|WP_002889726.1\|1704007_1705063_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP012987.1\|WP_004177336.1\|1708993_1709788_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
NZ_CP012987.1\|WP_016530034.1\|1702052_1703510_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP012987.1\|WP_002889733.1\|1701336_1701795_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP012987.1\|WP_049007144.1\|1711022_1712366_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426
NZ_CP012987.1\|WP_002889795.1\|1697306_1698707_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
NZ_CP012987.1\|WP_002889720.1\|1706523_1707747_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_CP012987.1\|WP_004145825.1\|1714330_1714912_-\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP012987.1\|WP_002889716.1\|1708362_1709001_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_CP012987.1\|WP_002889793.1\|1699530_1699929_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_CP012987.1\|WP_002889696.1\|1713488_1714256_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP012987.1\|WP_032432621.1\|1705222_1706083_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
NZ_CP012987.1\|WP_004178678.1\|1706305_1706521_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
NZ_CP012987.1\|WP_049007146.1\|1709780_1711019_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NZ_CP012987.1\|WP_002889727.1\|1703552_1704005_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP012987.1\|WP_032416706.1\|1695873_1697157_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
NZ_CP012987.1\|WP_004177335.1\|1707759_1708356_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_CP012987.1\|WP_002889742.1\|1699986_1701231_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP012987.1\|WP_002889699.1\|1712777_1713518_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577

Protein	Function_ID	Function_description	E-value
NZ_CP012987.1\|WP_004177331.1\|1698752_1699445_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	3.98097e-151
NZ_CP012987.1\|WP_002889726.1\|1704007_1705063_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP012987.1\|WP_004177336.1\|1708993_1709788_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.37213e-153
NZ_CP012987.1\|WP_016530034.1\|1702052_1703510_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP012987.1\|WP_002889733.1\|1701336_1701795_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
NZ_CP012987.1\|WP_049007144.1\|1711022_1712366_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
NZ_CP012987.1\|WP_002889795.1\|1697306_1698707_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
NZ_CP012987.1\|WP_002889720.1\|1706523_1707747_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_CP012987.1\|WP_004145825.1\|1714330_1714912_-\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	2.35176e-148
NZ_CP012987.1\|WP_002889716.1\|1708362_1709001_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
NZ_CP012987.1\|WP_002889793.1\|1699530_1699929_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	2.69204e-83
NZ_CP012987.1\|WP_002889696.1\|1713488_1714256_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
NZ_CP012987.1\|WP_032432621.1\|1705222_1706083_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	1.49335e-128
NZ_CP012987.1\|WP_004178678.1\|1706305_1706521_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	4.00668e-29
NZ_CP012987.1\|WP_049007146.1\|1709780_1711019_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NZ_CP012987.1\|WP_002889727.1\|1703552_1704005_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.92264e-85
NZ_CP012987.1\|WP_032416706.1\|1695873_1697157_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP012987.1\|WP_004177335.1\|1707759_1708356_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
NZ_CP012987.1\|WP_002889742.1\|1699986_1701231_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP012987.1\|WP_002889699.1\|1712777_1713518_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109

>NZ_CP012987.1|WP_032432621.1|1705222_1706083_+|glycerophosphodiester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDNLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRTAIELGADGVMVDSPAQAKSWQ
>NZ_CP012987.1|WP_002889726.1|1704007_1705063_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>NZ_CP012987.1|WP_002889727.1|1703552_1704005_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>NZ_CP012987.1|WP_016530034.1|1702052_1703510_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLLEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>NZ_CP012987.1|WP_002889733.1|1701336_1701795_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>NZ_CP012987.1|WP_002889742.1|1699986_1701231_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>NZ_CP012987.1|WP_002889793.1|1699530_1699929_-|sigma-factor-binding-protein-Crl
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIDDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>NZ_CP012987.1|WP_004177331.1|1698752_1699445_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARTHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>NZ_CP012987.1|WP_002889795.1|1697306_1698707_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>NZ_CP012987.1|WP_032416706.1|1695873_1697157_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNRAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQVVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDRSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>NZ_CP012987.1|WP_004178678.1|1706305_1706521_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVIFGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>NZ_CP012987.1|WP_002889720.1|1706523_1707747_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>NZ_CP012987.1|WP_004177335.1|1707759_1708356_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>NZ_CP012987.1|WP_002889716.1|1708362_1709001_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>NZ_CP012987.1|WP_004177336.1|1708993_1709788_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>NZ_CP012987.1|WP_049007146.1|1709780_1711019_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYITVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFISGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>NZ_CP012987.1|WP_049007144.1|1711022_1712366_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVLKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>NZ_CP012987.1|WP_002889699.1|1712777_1713518_+|murein-L,D-transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>NZ_CP012987.1|WP_002889696.1|1713488_1714256_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV
>NZ_CP012987.1|WP_004145825.1|1714330_1714912_-|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLQDEANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFSRYVESVGRAGDVLLGISTSGNSGNVIKAIEAARAQGMKVITLTGKDGGKMAGSADVEIRVPHFGYADRIQEIHIKVIHILIMLIEKEMAKG

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Crispr_ID: NZ_CP012987_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012987_5

2055113-2055247

Orphan

Consensus_repeat	Method
GTTCGGTAGCCCGGCTAAGCGTAGCGCAAGCCGGGGGATGTCCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012987_5

>merge|NZ_CP012987|5|2055113-2055247|CRISPRCasFinder
GTTCGGTAGCCCGGCTAAGCGTAGCGCAAGCCGGGGGATGTCCCGGGGGGCGGCGCTTCGCGTCTTACCCGGGCTACACAACCCGCAACGTTCGGTAGCCCGGCTAAGCGTAGCGCAAGCCGGGGGATGCCCCGG

>NZ_CP012987|5|5|2055113-2055247|CRISPRCasFinder
GTTCGGTAGCCCGGCTAAGCGTAGCGCAAGCCGGGGGATGTCCCGG	GGGGCGGCGCTTCGCGTCTTACCCGGGCTACACAACCCGCAAC
GTTCGGTAGCCCGGCTAAGCGTAGCGCAAGCCGGGGGATGCCCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012987.1\|WP_032413340.1\|2062600_2063398_+\|4-hydroxy-2-oxoheptanedioate-aldolase	unknown	unknown	gnl\|CDD\|131364
NZ_CP012987.1\|WP_004151392.1\|2061297_2061678_+\|5-carboxymethyl-2-hydroxymuconate-Delta-isomerase	unknown	unknown	gnl\|CDD\|184991
NZ_CP012987.1\|WP_019705591.1\|2046320_2047157_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP012987.1\|WP_002887487.1\|2061786_2062590_+\|2-oxo-hepta-3-ene-1,7-dioic-acid-hydratase	unknown	unknown	gnl\|CDD\|131365
NZ_CP012987.1\|WP_002887494.1\|2058962_2060429_+\|5-carboxymethyl-2-hydroxymuconate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143412
NZ_CP012987.1\|WP_002887492.1\|2060430_2061288_+\|3,4-dihydroxyphenylacetate-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|131351
NZ_CP012987.1\|WP_048990683.1\|2048652_2049252_-\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	unknown	unknown	gnl\|CDD\|181670
NZ_CP012987.1\|WP_002887560.1\|2047189_2047723_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP012987.1\|WP_004182852.1\|2050120_2051608_-\|sodium:solute-symporter-family-protein	unknown	unknown	gnl\|CDD\|271357
NZ_CP012987.1\|WP_004146085.1\|2057572_2058205_+\|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase	unknown	unknown	gnl\|CDD\|185125
NZ_CP012987.1\|WP_002887553.1\|2052196_2053636_-\|D-aminoacylase	unknown	unknown	gnl\|CDD\|238622
NZ_CP012987.1\|WP_004177534.1\|2058201_2058966_+\|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase	unknown	unknown	gnl\|CDD\|185125
NZ_CP012987.1\|WP_004177525.1\|2047792_2048656_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP012987.1\|WP_004894494.1\|2053836_2055057_+\|amino-acid-deaminase	unknown	unknown	gnl\|CDD\|143492
NZ_CP012987.1\|WP_004177530.1\|2051793_2052186_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100004
NZ_CP012987.1\|WP_004178519.1\|2049238_2050111_-\|2-dehydro-3-deoxygalactonokinase	unknown	unknown	gnl\|CDD\|377446
NZ_CP012987.1\|WP_048990681.1\|2055264_2056281_-\|Ldh-family-oxidoreductase	unknown	unknown	gnl\|CDD\|376860
NZ_CP012987.1\|WP_002887503.1\|2056845_2057286_-\|homoprotocatechuate-degradation-operon-regulator-HpaR	unknown	unknown	gnl\|CDD\|188209
NZ_CP012987.1\|WP_023316373.1\|2056553_2056883_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_009485350.1\|2053613_2053793_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP012987.1\|WP_032413340.1\|2062600_2063398_+\|4-hydroxy-2-oxoheptanedioate-aldolase	gnl\|CDD\|131364	TIGR02311, 24-dihydroxyhept-2-ene-17-dioic_acid_aldolase, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.	1.47966e-152
NZ_CP012987.1\|WP_004151392.1\|2061297_2061678_+\|5-carboxymethyl-2-hydroxymuconate-Delta-isomerase	gnl\|CDD\|184991	PRK15031, PRK15031, 5-carboxymethyl-2-hydroxymuconate Delta-isomerase.	1.05419e-95
NZ_CP012987.1\|WP_019705591.1\|2046320_2047157_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.63059e-15
NZ_CP012987.1\|WP_002887487.1\|2061786_2062590_+\|2-oxo-hepta-3-ene-1,7-dioic-acid-hydratase	gnl\|CDD\|131365	TIGR02312, 2-keto-4-pentenoate_hydratase, 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.	2.25294e-174
NZ_CP012987.1\|WP_002887494.1\|2058962_2060429_+\|5-carboxymethyl-2-hydroxymuconate-semialdehyde-dehydrogenase	gnl\|CDD\|143412	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.	0
NZ_CP012987.1\|WP_002887492.1\|2060430_2061288_+\|3,4-dihydroxyphenylacetate-2,3-dioxygenase	gnl\|CDD\|131351	TIGR02298, putative_34-dihydroxyphenylacetate_23-dioxygenase, 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.	0
NZ_CP012987.1\|WP_048990683.1\|2048652_2049252_-\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	gnl\|CDD\|181670	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed.	1.24409e-109
NZ_CP012987.1\|WP_002887560.1\|2047189_2047723_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.25491e-15
NZ_CP012987.1\|WP_004182852.1\|2050120_2051608_-\|sodium:solute-symporter-family-protein	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	7.45033e-91
NZ_CP012987.1\|WP_004146085.1\|2057572_2058205_+\|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase	gnl\|CDD\|185125	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional.	8.3687e-131
NZ_CP012987.1\|WP_002887553.1\|2052196_2053636_-\|D-aminoacylase	gnl\|CDD\|238622	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.	3.00951e-159
NZ_CP012987.1\|WP_004177534.1\|2058201_2058966_+\|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase	gnl\|CDD\|185125	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional.	2.79276e-144
NZ_CP012987.1\|WP_004177525.1\|2047792_2048656_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	4.60515e-74
NZ_CP012987.1\|WP_004894494.1\|2053836_2055057_+\|amino-acid-deaminase	gnl\|CDD\|143492	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties of cryptic DSDs are still poorly understood. Typically, DSDs catalyze the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia.	0
NZ_CP012987.1\|WP_004177530.1\|2051793_2052186_-\|RidA-family-protein	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	1.22566e-30
NZ_CP012987.1\|WP_004178519.1\|2049238_2050111_-\|2-dehydro-3-deoxygalactonokinase	gnl\|CDD\|377446	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase. 2-keto-3-deoxy-galactonokinase EC:2.7.1.58 catalyzes the second step in D-galactonate degradation.	2.40807e-117
NZ_CP012987.1\|WP_048990681.1\|2055264_2056281_-\|Ldh-family-oxidoreductase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	2.08435e-123
NZ_CP012987.1\|WP_002887503.1\|2056845_2057286_-\|homoprotocatechuate-degradation-operon-regulator-HpaR	gnl\|CDD\|188209	TIGR02337, Homoprotocatechuate_degradative_operon_repressor., homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.	4.17885e-59

>NZ_CP012987.1|WP_004894494.1|2053836_2055057_+|amino-acid-deaminase
MKYHSAPLIPHKSALMSAPANLLAEEVCLPAALLKKSALENNISWMQRYADARGVSLAPHGKTTMTPWIFQAQQRAGAWGIGVGSVWQASAAMASGIQRVLMVNQLVGKANMQVVAQLKAHYRAVDFICCVDSEVNVRALSAFFADQGQTLDVLIELGVPGGRCGCRSVDDALALAQRVSDLPGLRLRGLELYEGVLHGDDPQPQVEALLQQAAALACRMEPLVDGEFILTGAGTVWYDVVCNIWLAAAKPRRCRIVIRPGCYITHDRGIYDLAQQELIARDPIACDLAGDLTSALELMAMVQSVPEADRAVVNFGKRDCAFDAGLPQPIAHYRNGQELALRAESIVSTGIMDQHCMLRLAPGSDVQVGDILLFGTSHPCLTFDKWKTLLLVDDDYNVLDELDTLF
>NZ_CP012987.1|WP_009485350.1|2053613_2053793_+|hypothetical-protein
MKSQSTFIAITPFRHADKLTIYKRKKQWKTTQNSDRFVILLFKTNNIFILKIYLSNSYK
>NZ_CP012987.1|WP_002887553.1|2052196_2053636_-|D-aminoacylase
MKVDWLFKNVTVIDGSGGPQYRADVAVKGDRIMAIAPALDVAAEQVIDGQGRVLAPGFIDVHTHDDINVIRMPEYLPKLSQGVTTVIVGNCGISAATATMRGEVPDPMNLLGEQQHFIYPTVEAYAHAVEAARPSLNVGTLIGHTALRNNHMDDLFRPANETEIAGMRVQLRDALRQGALGLSTGLAYASAFQSTTEEVMALAEELAAGKGVYTTHLRSEFEPILEALDEAFRIGRHGNVPVVVSHHKCAGAKNWGRTKETLAFFDEMRQQQDIACDCYPYSASSSTLDMKQVTDEFDIVITWSEAQPEQAGKTLQQIADEWQVSLHDAAARLMPAGAIYHNMDEQDVRRVMRYPVTMIGSDGLPNDPMPHPRLWGAFPRVLGHYSRDEQLFPLTTAVHKMTGLSAARFQLADRGLVKIGYFADLVLFDPQTVRDVASFSDPKRPADGIEAVMVNGVMSYGSDKKITGRAGRFLRRRMD
>NZ_CP012987.1|WP_004177530.1|2051793_2052186_-|RidA-family-protein
MSIKRYGVEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKDGEVVEGGIVDQSRLAIQNCVDIMTEAGYTLADVVHVKVILTDARYFQSFNKVFREFFGDNPPARICCVADLVVDCKVEVDVTCFNAARQ
>NZ_CP012987.1|WP_004182852.1|2050120_2051608_-|sodium:solute-symporter-family-protein
MNNMSFMIWFSVYACAMITLGWYVSRKQKTGEDFLLGGRSLPMILTLGSTVGTMVGTGSSVGAVGFGYSNGWAGMLYGLGGAVGILLVAWLFAPVRKLRFMTMSEEMSYYTGGSKIIKNLVAILIFIASIGWLGAHILGGGLYLAWASGIDINVAKIIIALAFVVYVGIGGYSAVVWIDTIQSIVLFVGFILMAILAVHHVGGWSHIQQAVDPAAQSLFAVDKLGVLPALSLAMVIGVGVLATPSYRQRIYSAKTVSSVRHSFTITGLLYLGFSFLPAIIGMAVWTMNPQLENSGFAFLFATQVLPPVLAMAILIAGMSANMSSGSSDAIAAVSIMLRDLYTLVTGHMPAPEKAIRLSRIFLVLVIALALLFALTSNDIISYITKMISMIMSGMFICTMLGRFWTRFNWQGAVAALAGGAGASVAVLVDSDWLAFWGNPCIPAVLTSLVASVVVTLLTPASSMSREQALEMITRERESRPTPPPLPIGKRHTSRG
>NZ_CP012987.1|WP_004178519.1|2049238_2050111_-|2-dehydro-3-deoxygalactonokinase
MNEYIAVDWGSTQLRAWRMRDGECIDKLKLPCGVTRLNGQRAEAVFQQQLAPWRGDPALPVVMAGMIGSDAGWQPVPYLACPLALEALNGQLYEVAEKVWIVPGLKVAQAADYDVMRGEETQLLGAWQLMPAECYVMPGTHCKWVQVQNGVVRQFATAMTGELHHLLLNHSLLGQQLPAQLPDEAAFALGMEKGLNQPALLSGLFSARAARVLGALAATSVSDYLSGLLIGAEVATFSERYRASRVVLVGEHSLSARYQQAMAARGLAVSCCSGEAAFLSGIARMIDGQD
>NZ_CP012987.1|WP_048990683.1|2048652_2049252_-|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase
MDKIKLVAILRGIQPAEAADHIETLINAGFRYIEIPLNSPNWQQSIPAMVRQFGERAMIGAGTVLKVEQVDFLAEAGAKLIVTPNTAPAVIRRAVDKGMLVCAGCATASEAFSALDAGAQWLKIFPSSAFGADYIRALKAVLPPEVPVLAVGGVTPENLATWIQAGCAGAGLGSDLYRAGQAVERTREQAERFISASKS
>NZ_CP012987.1|WP_004177525.1|2047792_2048656_+|MurR/RpiR-family-transcriptional-regulator
MSWSIDIISCITDRFVELTATEKRIAQFILDDVAAAAELPIAEIARLTQTSQASVTRFARALGCKDVRELKMKLAQSLAVGQRFILDVPDLEGVQGIYESIISVLETNRRALDIEALKRAVSWLSDARQILALGMGGGSTICAQEIQYRLFRLGLPVVSQSDGLLVRMMSSAVTPQDVVIVLSLGGYTREIIESAAIASQYGAKVIAITPAGTPLAEQADLVLPLLVRENDYIFKPSTSRYAMLAMVDVLATELAMANKTQAKGKLRRIKLALDSHRGGVDRQPLGD
>NZ_CP012987.1|WP_002887560.1|2047189_2047723_+|GNAT-family-N-acetyltransferase
MKTNTITAGAVLRLTQESDIALLPAIERSAAQAFRQIPSLAWLADSEVISVARHHDYLETEHSLLAVAAGQPVGFILTEPLDDALFIVEVAVHQAWQQQGIGRMLLERVIESARQMGYPAVTLTTFREVPWNAPFYTRLGFAMLDELTLPAGLAAKREQETRHGLPPESRCAMRLAL
>NZ_CP012987.1|WP_019705591.1|2046320_2047157_-|GNAT-family-N-acetyltransferase
MELTAVPATQFSSVQLTDILNACFEAYLVPVTQSVEGFVQRFSAEGMSLVDSRVWLAGDEPAAIAIVARRGSAARLAAFALRPAWRGKGLGRKLMQELLMLLQQQGIETVYLEVIRDNHAAVALYQSLGFTRRYGLCGYLSTELLAPVPGVLQLYPTLSLLRRAIEESNSQLPWLLDPLTFATLPCQVVTLEQRAFAVLTTAGSRPVLSFLWVEPAARRQGLARELLMALAQQFPGIGTSVTVPETFTPLFAAAGYAALTLQQYEMSATMNALRSAGR
>NZ_CP012987.1|WP_048990681.1|2055264_2056281_-|Ldh-family-oxidoreductase
MESVTLSLPEAYDLALEVLSANGFSADHAAAIARNVTAGERDGCASHGLWRLLGIVDTLRKGKVSPDAEPQIHDQAPAIARADAGGAFSLLAYERALPLLLEKTRHNGIAALAINRCVHFSALFADIEPLTEAGLVGLACTPSHAWVAPAGGTRPLFGTNPIAFGWPRQDKPPFIVDMATSAAARGEIQLHQRAGKALPEGWGIDSQGQPTTDAAEVLNGAMLTFGGHKGSALAAMVELLAGPLIGDMTSAESLAWDNGAGGLPYGGELILALDPQRFLGAQAQEQLERAETLFNAMQDQGARLPGERRFACRQQSERQGVAISRSLHDEICALRQGG
>NZ_CP012987.1|WP_023316373.1|2056553_2056883_-|hypothetical-protein
MASLPGAVMKKSSGYGSALSLARAISVSARAGDSGSLGCGSGQPYSQRALGQFGLQPVVGGSYVAAAHIFATAQQALRRRRVFQRFRQPEGAVYGVGEVLPAPGAALAQ
>NZ_CP012987.1|WP_002887503.1|2056845_2057286_-|homoprotocatechuate-degradation-operon-regulator-HpaR
MHDSLTIALLQAREAAMAYFRPIVKRHNLTEQQWRIVRILAERPSMDFHDLAFRACILRPSLTGILTRMERDGLVLRLKPVNDQRKLYVSLTPAGTALYESAQAEVEETYRLLEAQFTTEKLQQLTSLLEEFIALGVPAGRGDEEE
>NZ_CP012987.1|WP_004146085.1|2057572_2058205_+|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase
MKGTIFAVALNHRSQLDAWREAFQQAPYKTPPKTAVWFIKPRNTVIGDGEAIPYPQGETVQSGATVALIVGKTARKVAAEEAANYIAGYALANDVSLPEESFYRPAIKAKCRDGFCPIGTLSAVRNVDDLTIITEINGREADSWHTGDLQRNAAQLLSALSEFATLNPGDAILIGTPHSRVTLRPGDRVRILADGFPALENPVVAEGELA
>NZ_CP012987.1|WP_004177534.1|2058201_2058966_+|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase
MKQARIEWQGQVRDVLVNERDQVRLDDGTVLKEGEFRWLPPADGTLFALGLNYADHASELEFKPPTEPLVFIKAPNTFTGHQQQSVRPDNVEYMHYEAELVVVIGKTARRVSEAEAMDYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDTLTPIGPWIVSKEAIPDPHNLALRTWVNGELRQQGTTADLIFSIPFLIAYLSEFMTLQPGDMIATGTPKGLSDVVPGDEVIVEVEGVGRLVNHIISQQAYEETLS
>NZ_CP012987.1|WP_002887494.1|2058962_2060429_+|5-carboxymethyl-2-hydroxymuconate-semialdehyde-dehydrogenase
MKKINHWINGKNVAGADYFHTTNPATGEVLAEVASGGEAEINQAVAAAKEAFPKWANLPMKERARLMRRLGDLIDQNVPEIAAMETADTGLPIHQTKNVLIPRASHNFEFFAEVCQQMNGKTYPVDDKMLNYTLVQPVGVCALVSPWNVPFMTATWKVAPCLALGNTAVLKMSELSPLTADRLGELALEAGIPAGVLNVVQGYGATAGDALVRHHDVRAVSFTGGTATGRNIMKNAGLKKYSMELGGKSPVLIFEDADIERALDAALFTIFSINGERCTAGSRIFIQQSIYPEFVKRFAERANRLRVGDPTDPNTQVGALISQQHWEKVSGYIRLGIEEGATLLAGGADKPSDLPAHLKAGNFLRPTVLADVDNRMRVAQEEIFGPVACLLPFKDEAEGLRLANDVEYGLASYIWTQDVSKVLRLARGIEAGMVFVNTQNVRDLRQPFGGVKASGTGREGGEYSFEVFAEMKNVCISMGDHPIPKWGV
>NZ_CP012987.1|WP_002887492.1|2060430_2061288_+|3,4-dihydroxyphenylacetate-2,3-dioxygenase
MGKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEIGKRCREMGVDTIIVFDTHWLVNSAYHINCADHFQGVYTSNELPHFIRDMTYDYDGNPELGQLIADEAVKLGVRAKAHNIPSLKLEYGTLVPMRYMNSDKHFKVVSISAFCTVHDFADSRRLGEAILKAIEKYDGTVAVLASGSLSHRFIDDQRAEEGMNSYTREFDHQMDERVVKLWREGKFKEFCTMLPEYADYCYGEGNMHDTVMLLGLLGWDKYDGKVEFITELFASSGTGQVNAVFPLPAQA
>NZ_CP012987.1|WP_004151392.1|2061297_2061678_+|5-carboxymethyl-2-hydroxymuconate-Delta-isomerase
MPHFIAECTDNIREQADLPGLFAKVNEALAATGIFPIGGIRSRAHWLDTWQMADGRQDYAFVHMTLKIGAGRSLESRQDVGDMLFALIKSHFATLMESRYLALSFAMEELDPTLNYKQNNVHALFK
>NZ_CP012987.1|WP_002887487.1|2061786_2062590_+|2-oxo-hepta-3-ene-1,7-dioic-acid-hydratase
MLDKQTRTLIAQRLNQAEKQREQIRAISLDYPSITIEDAYAVQREWVEMKIAEGRVLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGSDIPTDRFIVPRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCHNIDPETQRPRKVFDTISDNAANAGVILGGRPIKPDELDLRWISALLYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGAISCRFV
>NZ_CP012987.1|WP_032413340.1|2062600_2063398_+|4-hydroxy-2-oxoheptanedioate-aldolase
MNNAFKEALKAGRPQIGLWLGLCSSYSAELLAGAGFDWLLIDGEHAPNNVPTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLVPMVQNAEEARLAVRATRYPPAGIRGVGSALARASRWNRVPDYIHQANDAMCVLVQIETREALKNLPQILDVDGVDGVFIGPADLSADMGHGGNPQHPEVQAAIEDAIQQIRQAGKAPGILMANEQLAKRYLELGALFVAVGVDTTLLARGAEALAARFTHTATTTTDNNKSVY

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Crispr_ID: NZ_CP012987_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012987_6

4215243-4215338

Orphan

Consensus_repeat	Method
TTGTGCCAACAGAATGCCAACAAAGTGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012987_6

>merge|NZ_CP012987|6|4215243-4215338|CRISPRCasFinder
TTGTGCCAACAGAATGCCAACAAAGTGCCAACGCAAACCCAGTAACCACGCTGCGTACCGGCGAGGTTGTGCCAACAGAATGCCAACAAAGTGCCA

>NZ_CP012987|6|6|4215243-4215338|CRISPRCasFinder
TTGTGCCAACAGAATGCCAACAAAGTGCCA	ACGCAAACCCAGTAACCACGCTGCGTACCGGCGAGG
TTGTGCCAACAGAATGCCAACAAAGTGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012987.1\|WP_162779383.1\|4215752_4217168_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP012987.1\|WP_074183191.1\|4212861_4212987_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_004151303.1\|4212674_4212869_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_071717292.1\|4221126_4221297_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP012987.1\|WP_060579332.1\|4213305_4213938_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NZ_CP012987.1\|WP_004151308.1\|4210608_4210767_-\|DUF1317-family-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP012987.1\|WP_139618712.1\|4219963_4220317_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223880
NZ_CP012987.1\|WP_060579331.1\|4211440_4212286_-\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP012987.1\|WP_040181701.1\|4217897_4218158_+\|DUF4752-family-protein	unknown	unknown	gnl\|CDD\|339554
NZ_CP012987.1\|WP_060579335.1\|4218743_4218956_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_023284762.1\|4214037_4214253_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP012987.1\|WP_004141720.1\|4214302_4214623_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP012987.1\|WP_016529276.1\|4212301_4212586_-\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
NZ_CP012987.1\|WP_004151298.1\|4214709_4214856_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012987.1\|WP_060579336.1\|4218952_4219585_+\|DUF551-domain-containing-protein	unknown	unknown	gnl\|CDD\|367946
NZ_CP012987.1\|WP_004218528.1\|4217167_4217470_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CP012987.1\|WP_060579338.1\|4220671_4221127_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NZ_CP012987.1\|WP_101977350.1\|4217466_4217901_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340308
NZ_CP012987.1\|WP_032434117.1\|4210763_4211444_-\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP012987.1\|WP_060579334.1\|4218264_4218744_+\|ead/Ea22-like-family-protein	unknown	unknown	gnl\|CDD\|379401

Protein	Function_ID	Function_description	E-value
NZ_CP012987.1\|WP_162779383.1\|4215752_4217168_+\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	1.54207e-159
NZ_CP012987.1\|WP_071717292.1\|4221126_4221297_+\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	5.03968e-20
NZ_CP012987.1\|WP_060579332.1\|4213305_4213938_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	5.52647e-25
NZ_CP012987.1\|WP_004151308.1\|4210608_4210767_-\|DUF1317-family-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	3.35548e-20
NZ_CP012987.1\|WP_139618712.1\|4219963_4220317_+\|hypothetical-protein	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	4.77159e-05
NZ_CP012987.1\|WP_060579331.1\|4211440_4212286_-\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	3.62688e-34
NZ_CP012987.1\|WP_040181701.1\|4217897_4218158_+\|DUF4752-family-protein	gnl\|CDD\|339554	pfam15944, DUF4752, Domain of unknown function (DUF4752). This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 90 and 105 amino acids in length. There is a conserved GLA sequence motif.	3.35925e-41
NZ_CP012987.1\|WP_023284762.1\|4214037_4214253_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	5.1306e-12
NZ_CP012987.1\|WP_004141720.1\|4214302_4214623_+\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	0.00392054
NZ_CP012987.1\|WP_060579336.1\|4218952_4219585_+\|DUF551-domain-containing-protein	gnl\|CDD\|367946	pfam04448, DUF551, Protein of unknown function (DUF551). This family represents the carboxy terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.	4.77231e-10
NZ_CP012987.1\|WP_004218528.1\|4217167_4217470_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	0.00203375
NZ_CP012987.1\|WP_060579338.1\|4220671_4221127_+\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	3.63537e-78
NZ_CP012987.1\|WP_101977350.1\|4217466_4217901_+\|hypothetical-protein	gnl\|CDD\|340308	pfam17593, DUF5490, Family of unknown function (DUF5490). This is a family of unknown function found in Myoviridae.	0.00473479
NZ_CP012987.1\|WP_032434117.1\|4210763_4211444_-\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	2.5077e-32
NZ_CP012987.1\|WP_060579334.1\|4218264_4218744_+\|ead/Ea22-like-family-protein	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	6.39594e-12

>NZ_CP012987.1|WP_004151298.1|4214709_4214856_+|hypothetical-protein
MPKSNRFYQAQTHKNVTRDRFIRSVNPVVGMKMRAILEELKRKEEGRE
>NZ_CP012987.1|WP_004141720.1|4214302_4214623_+|hypothetical-protein
MENAIARKLEPPILNPIEIEGILLNRLLSIGQKVFAEMRGVSESTISRRKSEGYYAEMAKEISALGLQVVPPEAVVVSRHYLQSVETLADIGLRAERCRPGPLGWD
>NZ_CP012987.1|WP_023284762.1|4214037_4214253_+|helix-turn-helix-transcriptional-regulator
METISQRLKKKREEMNLSQAQLAKKVGMRQQSLQAIEAGTTKRPRYLFELATALHCDPKWLLYGEMPSQSQ
>NZ_CP012987.1|WP_060579332.1|4213305_4213938_-|helix-turn-helix-domain-containing-protein
MSLADRVKQKRIELGLTQTEAALSAGITQQSWQSIEKGDTRKPRNIIGIAKALKCDPDWLMNGGAFMPIAEVSSKKVPLISYVQAGALAEKNPIEAFDGSFEYILTDHEVSDFTFALRIEGDSMEPDFKAGDVIIVDPEVEPTPGEFVVAKNGGAQATFKKYRPTYTDHLGCQHFELVPLNDDYPIISSEHQPLTIIGVMIEHRIYRRKR
>NZ_CP012987.1|WP_074183191.1|4212861_4212987_-|hypothetical-protein
MLGCGMSRNGIRSLIYCLLICGVIWTALIIKILHATGVFNG
>NZ_CP012987.1|WP_004151303.1|4212674_4212869_-|hypothetical-protein
MANSIPNNGRAVMMRNRRTGAAWLVSFDYRDGSYWHEPQGNLRHIRRPYASRSIEPNLVPAGTH
>NZ_CP012987.1|WP_016529276.1|4212301_4212586_-|host-nuclease-inhibitor-GamL
MNAYRAYDAIEERKWAEQSLTEEKQKWIDDRAQEIIDALPKEPSGLFRFSVPMDKSPYEGLRSDAAGEAYNDLISAVAYAQAEYDWDHRTGCPF
>NZ_CP012987.1|WP_060579331.1|4211440_4212286_-|phage-recombination-protein-Bet
MANELVITASSLSERGIDGATWSALKNSIYPGAKDESVMMALDYCRARNLDPLLKPVHLVPMSVKDSKSGKSEWRDVVMPGIGLYRIQADRSGDYAGAKEPEFGPDVTLTLTGIEVTVPQWCKYTVSKRMPSGEIVEFSAKEYWVENYATAGRDTTAPNAMWKKRPYGQLAKCAEAQALRKAWPEIGQQPTAEEMEGKTLEVDARDVTPRSTTEALPLVASEETLQAITDLLTSMNKDWEQDFLPLCSNIFKRDIFQASQLTEEEAQKGFSFLQKKAQVAA
>NZ_CP012987.1|WP_032434117.1|4210763_4211444_-|YqaJ-viral-recombinase-family-protein
MTPEIILERTGIDVTRVEQGDESWHRLRLGVITASEVHNVISKPKSGKKWTDMKMSYFLTLLAEVCTGEAPEVNAKALAWGKQYEADARTLFEFTTDVKVTESPILFRDEGMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGKDAWYFANYDPRMKREGIHHVVVERDDKYMSDFNEMVPEFISKMDESLAEIGFTFGEQWK
>NZ_CP012987.1|WP_004151308.1|4210608_4210767_-|DUF1317-family-protein
MKHYRDAITVGKVKCMYSVLHRGWLMPSGEVVRNPLKAQRLAEELDTKRGAR
>NZ_CP012987.1|WP_162779383.1|4215752_4217168_+|AAA-family-ATPase
MTPPHSIEAEQSVLGGLLLDDDSSERTQKVLSILKPESFYSRQHQVIFAEMRQMYRDHKPVDLLTLFDALESKGLTETVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERLKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGINCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMTKDDYGYRGDWNGDLKKATGVMGALIDTNNLLIDDTPGISLAHVVAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKTLAKELDCVVVLLTQLNRELEKRTNKRPLPSDSRDTGQIEQDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRREKEEKPTKRGGF
>NZ_CP012987.1|WP_004218528.1|4217167_4217470_+|MarR-family-transcriptional-regulator
MKKNSGKQAVINFIGQHPGCSFQDIRRGTGLDSSVVNSSLWQMHRDGQVKREGECRSYRYTLIDTTAVTESDPSVQYRQRPGGVNPMTNLFNQCLAGVRK
>NZ_CP012987.1|WP_101977350.1|4217466_4217901_+|hypothetical-protein
MKNEVEQIALQNDMSIEFVTWFFNEKKAGCGNVWFMMMAAMWEGWKGRSIEMDKLAAENVALKESRNNLAEFIHEELDADYPLNMNLETHATDRIVAGIKADGVEEFAAKLRIPGDDQFFDALAKGVALAADDFAKQLREGAGK
>NZ_CP012987.1|WP_040181701.1|4217897_4218158_+|DUF4752-family-protein
MSIATYLNTGLAILGWAYIMVKTGQWITKNALRQWDKRRKESRRQKAVNEFYDAFELNSLEPGSTVRLATKGDLTIMMFRSEGDDK
>NZ_CP012987.1|WP_060579334.1|4218264_4218744_+|ead/Ea22-like-family-protein
MTDITELAQSLKAAVEKATQGNWRAFQYHDGRCGIGGGHNDEIMVCEHISKERPHDAMFIALANPANVLALVEALEKAQQRIVELDRKNCELDSLTQRWAVERAENADRIAELESRTVKLPDLRQIVSGDRYVWSDGVYNYSRDVKVALAAAGIKVEVE
>NZ_CP012987.1|WP_060579335.1|4218743_4218956_+|hypothetical-protein
MAITEGFCADLYCDCDGCQSGKIYPQGQADFIGRNMTDISQQARKAGWRISKDRQRCYAPGHKISRGASQ
>NZ_CP012987.1|WP_060579336.1|4218952_4219585_+|DUF551-domain-containing-protein
MTKSTITRDELNEVIATYGKHHIAHRMANVLLAAMDSEPDCKERKLFCSTDTTRTRKTISVSAGIEGAPLYRHAQPALVIPDEMTAEQAYEIGYYYGDPVNVFARGANWMRQHIIDSTLAAAQHDTPALNSVQSVVTVPGKWIPVSERMPEVGVKVLCFPAEDEPIHAVFNGQLWLQDVSWSGSEEPIDNVIPVTVTHWMPLPAGPQEVR
>NZ_CP012987.1|WP_139618712.1|4219963_4220317_+|hypothetical-protein
MDARKTTIGIVYEKTLLLVCAVLVSNVALAIEKKEEIVPVRISCPAPVMPVKAQALRIEGSVDYAAWVNDKGDVYSVDITGDEVFFREAEVAIKKCKFMLGHPGVYRDTIKFSLVKP
>NZ_CP012987.1|WP_060579338.1|4220671_4221127_+|hypothetical-protein
MNIPQCGIKLHSGNFSAIGKILQEQLSDGKCLRLQVKEWREKRSLSQNALSHMWYTEISEYLINSGRTDATPEWVKRNLKKTYLGCEEVTYTDFITGEKTTTWEPRHTSDLDTGEMHIFLTKVEAWCAQFGLTLTIPHGCEYQQLQQKQEA
>NZ_CP012987.1|WP_071717292.1|4221126_4221297_+|hypothetical-protein
MSSLLAKVMERGIFRVPARRKRKVEVKPSDIPTLKDYTARLVDKKWLRLRARRPHV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012987_6	6.1\|4215273\|36\|NZ_CP012987\|CRISPRCasFinder	4215273-4215308	36	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8447-8482	0	1.0
NZ_CP012987_6	6.1\|4215273\|36\|NZ_CP012987\|CRISPRCasFinder	4215273-4215308	36	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8447-8482	0	1.0
NZ_CP012987_6	6.1\|4215273\|36\|NZ_CP012987\|CRISPRCasFinder	4215273-4215308	36	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11383-11418	0	1.0
NZ_CP012987_1	1.1\|279542\|37\|NZ_CP012987\|CRISPRCasFinder	279542-279578	37	MH178096	Aeromonas phage AsXd-1, complete genome	10850-10886	5	0.865

1. spacer 6.1|4215273|36|NZ_CP012987|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

2. spacer 6.1|4215273|36|NZ_CP012987|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

3. spacer 6.1|4215273|36|NZ_CP012987|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

4. spacer 1.1|279542|37|NZ_CP012987|CRISPRCasFinder matches to MH178096 (Aeromonas phage AsXd-1, complete genome) position: , mismatch: 5, identity: 0.865

caggtagtgaatctgttgcaccaggtagtgaacgatt	CRISPR spacer
tacggggtgaatctgctgcaccaggtagtgaacgatt	Protospacer
.* * .*********.*********************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

160644 : 170058

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160333886.1\|160644_162279_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	3.1e-182	55.8
WP_032431772.1\|162333_163599_+	MFS transporter	NA	NA	NA	NA
WP_032431771.1\|163629_164718_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	1.2e-209	99.7
WP_004183954.1\|164804_165065_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_023282555.1\|165362_166223_+	class A extended-spectrum beta-lactamase SHV-27	A0A077SL40	Escherichia_phage	2.9e-155	99.3
WP_002210513.1\|166243_167005_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|167265_168168_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004224682.1\|168179_169445_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	7.8e-234	99.8
WP_002210516.1\|169437_170058_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_2

205278 : 288983

Klebsiella_phage(42.0%)

integrase,head,terminase,portal,holin,protease,tail,capsid

attL 215299:215314|attR 284942:284957

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002903687.1\|205278_206091_+\|protease	serine protease	NA	NA	NA	NA
WP_029602375.1\|206104_206221_+	hypothetical protein	NA	NA	NA	NA
WP_002903683.1\|206264_206594_-	multidrug efflux SMR transporter subunit KpnF	NA	NA	NA	NA
WP_002903681.1\|206580_206943_-	multidrug efflux SMR transporter subunit KpnE	NA	NA	NA	NA
WP_002903679.1\|207385_208420_+	AI-2E family transporter	NA	NA	NA	NA
WP_004176297.1\|208644_210300_+	malonate decarboxylase subunit alpha	NA	NA	NA	NA
WP_032412136.1\|210299_211142_+	triphosphoribosyl-dephospho-CoA synthase	NA	NA	NA	NA
WP_004143106.1\|211159_211459_+	malonate decarboxylase acyl carrier protein	NA	NA	NA	NA
WP_032412133.1\|211451_212285_+	biotin-independent malonate decarboxylase subunit beta	NA	NA	NA	NA
WP_032412130.1\|212284_213085_+	biotin-independent malonate decarboxylase subunit gamma	NA	NA	NA	NA
WP_004148291.1\|213221_214181_+	AEC family transporter	A0A0U2C0Y4	Salmonella_phage	2.7e-53	90.3
WP_004152239.1\|214184_214802_+	malonate decarboxylase holo-ACP synthase	NA	NA	NA	NA
WP_002903633.1\|214801_215704_+	malonate decarboxylase subunit epsilon	NA	NA	NA	NA
215299:215314	attL	NA	NA	NA	NA
WP_002903632.1\|215693_216620_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_048299811.1\|217273_218452_+	hypothetical protein	NA	NA	NA	NA
WP_015958364.1\|218454_218850_+	hypothetical protein	NA	NA	NA	NA
WP_004190310.1\|219010_220666_-	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_048299432.1\|220930_221851_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_004179716.1\|222014_222371_-	hypothetical protein	NA	NA	NA	NA
WP_040153866.1\|222526_224143_+	two-component system sensor histidine kinase DcuS	NA	NA	NA	NA
WP_004176303.1\|224139_224859_+	two-component system response regulator DcuR	NA	NA	NA	NA
WP_060579195.1\|224839_225790_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_004152245.1\|225857_228635_-	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	6.2e-66	31.1
WP_002903581.1\|229350_230787_+	anion permease	NA	NA	NA	NA
WP_004152246.1\|230841_232494_+	class I fumarate hydratase	NA	NA	NA	NA
WP_023316815.1\|232657_234274_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_004143067.1\|235351_235741_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
WP_004151556.1\|235733_236498_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA
WP_040183187.1\|236487_237840_-	3-carboxy-cis,cis-muconate cycloisomerase	NA	NA	NA	NA
WP_004179693.1\|237849_239052_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_016947027.1\|239062_239719_-	CoA transferase subunit B	NA	NA	NA	NA
WP_002903522.1\|239729_240416_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_004143057.1\|240585_241392_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_009760676.1\|241388_241952_-	DNA endonuclease SmrA	NA	NA	NA	NA
WP_002903460.1\|242053_242962_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_032431758.1\|243128_244439_+	M20 family metallo-hydrolase	NA	NA	NA	NA
WP_060579196.1\|244438_245884_+	amidohydrolase	NA	NA	NA	NA
WP_017879817.1\|246003_247122_+	transporter	NA	NA	NA	NA
WP_004146386.1\|247250_248351_+\|integrase	site-specific integrase	A0A1W6JP34	Morganella_phage	2.9e-115	56.8
WP_075212415.1\|249242_249452_-	helix-turn-helix domain-containing protein	A0A286S1P7	Klebsiella_phage	4.1e-23	80.9
WP_077265819.1\|249609_253191_-	SGNH/GDSL hydrolase family protein	A0A286S1P0	Klebsiella_phage	3.6e-34	67.2
WP_049109130.1\|253266_256344_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	62.1
WP_049109129.1\|256340_256721_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.4e-58	81.0
WP_049109128.1\|256733_257210_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	4.8e-51	65.8
WP_004884312.1\|257196_257670_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.1e-55	62.7
WP_060579197.1\|257691_261078_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	1.5e-303	56.7
WP_016530182.1\|261137_261371_-	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
WP_049109985.1\|261444_261750_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	2.1e-28	65.7
WP_021313622.1\|261752_262157_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	8.5e-33	57.7
WP_049109987.1\|262187_262892_-	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	5.5e-80	66.5
WP_049109989.1\|262948_263296_-	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.6e-30	59.3
WP_049109991.1\|263292_263742_-	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	2.7e-64	84.6
WP_049109993.1\|263738_264077_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	2.4e-41	74.1
WP_049109995.1\|264088_264415_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.8e-41	69.4
WP_060579198.1\|264414_264666_-	hypothetical protein	K7PHI6	Enterobacteria_phage	1.6e-10	68.1
WP_023341472.1\|264708_265926_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	1.3e-196	88.1
WP_032442230.1\|265935_266784_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	7.8e-129	84.6
WP_049110000.1\|266796_268104_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.6e-213	84.8
WP_023341469.1\|268103_269846_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	1.6e-141	46.2
WP_004177162.1\|269799_270264_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	3.7e-48	61.4
WP_004177164.1\|270446_270788_-	HNH endonuclease	K7P7P4	Enterobacteria_phage	3.0e-47	73.9
WP_029497198.1\|270843_271089_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.6e-18	64.2
WP_029497197.1\|271413_271686_-	hypothetical protein	NA	NA	NA	NA
WP_004177174.1\|271818_272103_+	hypothetical protein	NA	NA	NA	NA
WP_004190672.1\|272338_272614_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_004190674.1\|272610_272955_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-38	80.7
WP_004184488.1\|272951_273491_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	2.3e-102	100.0
WP_031280382.1\|273487_273787_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	2.9e-46	99.0
WP_071717307.1\|274313_274637_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_049109622.1\|275083_275866_-	molecular chaperone	F1C595	Cronobacter_phage	5.5e-113	78.7
WP_049109620.1\|275862_276339_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.1e-68	77.8
WP_049109615.1\|276420_276789_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	3.6e-38	60.3
WP_023328640.1\|276775_278155_-	AAA family ATPase	Q8W640	Enterobacteria_phage	8.1e-160	64.7
WP_049109614.1\|278151_279030_-	ATP-binding protein	Q8W641	Enterobacteria_phage	1.9e-85	63.9
WP_049109612.1\|279041_279872_-	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	8.5e-80	66.2
WP_032430925.1\|279868_280057_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_019705432.1\|280132_280360_-	helix-turn-helix domain-containing protein	A0A0N7C1T6	Escherichia_phage	1.5e-15	60.0
WP_023328643.1\|280484_281192_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	1.5e-53	49.8
WP_019705434.1\|281350_281659_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	3.9e-22	56.3
WP_019705435.1\|281648_281843_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.5e-08	50.0
WP_019705436.1\|282013_282238_+	hypothetical protein	NA	NA	NA	NA
WP_004218017.1\|282442_282604_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.5e-20	96.2
WP_040186816.1\|282596_282851_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	1.4e-36	89.3
WP_004146412.1\|282918_283041_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.3e-16	100.0
WP_004152156.1\|283037_283463_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_009309071.1\|283459_283654_+	hypothetical protein	NA	NA	NA	NA
WP_023304718.1\|283650_284478_+	hypothetical protein	Q8W654	Enterobacteria_phage	9.3e-111	84.0
WP_021441619.1\|284582_285101_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.3e-94	99.4
284942:284957	attR	NA	NA	NA	NA
WP_049109610.1\|285106_285832_+	DNA-binding protein	A0A286S260	Klebsiella_phage	7.1e-131	99.6
WP_049109607.1\|285821_286046_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	1.8e-29	90.5
WP_023313034.1\|287144_287405_+	hypothetical protein	A0A1L5C290	Pseudoalteromonas_phage	1.5e-11	43.7
WP_002903398.1\|288016_288175_-	hypothetical protein	NA	NA	NA	NA
WP_004224598.1\|288467_288983_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	4.6e-23	53.5

DBSCAN-SWA_3

600717 : 645838

Enterobacteria_phage(54.55%)

plate,integrase,terminase,head,portal,tail,tRNA,capsid

attL 605945:605962|attR 642104:642121

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004892876.1\|600717_601218_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|601334_601781_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_075212342.1\|601764_602559_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020324105.1\|602666_603842_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|603873_604566_-	CTP synthase	NA	NA	NA	NA
WP_004176547.1\|604711_605221_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_014343000.1\|605225_605564_+	DUF488 family protein	NA	NA	NA	NA
WP_004176548.1\|605553_605793_-	DUF333 domain-containing protein	NA	NA	NA	NA
605945:605962	attL	NA	NA	NA	NA
WP_004213128.1\|606057_606309_-	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
WP_060579213.1\|606352_607492_-	phage late control D family protein	B9A7A9	Serratia_phage	3.6e-145	70.5
WP_032411327.1\|607646_608819_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	2.9e-158	70.7
WP_004216461.1\|608818_609334_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.2
WP_004131585.1\|609379_609697_+	hypothetical protein	B9A7B2	Serratia_phage	1.0e-17	54.8
WP_032440702.1\|609696_609855_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.5e-11	63.3
WP_060579214.1\|609841_612817_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	6.3e-218	46.7
WP_060579215.1\|612832_613270_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.8e-52	67.4
WP_071717265.1\|613517_615248_+	deoxycytidylate deaminase	NA	NA	NA	NA
WP_060579216.1\|615478_616576_-\|tail	phage tail protein	G4KKN6	Yersinia_phage	8.8e-08	46.7
WP_032688258.1\|616575_616788_-	hypothetical protein	NA	NA	NA	NA
WP_060579217.1\|616784_619811_-\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
WP_032457349.1\|619800_620724_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	9.9e-53	43.6
WP_032411305.1\|620725_621076_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	2.1e-27	54.8
WP_032457348.1\|621072_621660_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	2.2e-61	61.0
WP_032457347.1\|621656_622292_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	6.6e-56	50.5
WP_023328065.1\|622288_622756_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	5.4e-47	59.5
WP_157835119.1\|622756_623092_-	peptidase	B6SD31	Bacteriophage	9.6e-06	33.3
WP_023339943.1\|623278_623824_-	lysozyme	Q1I0Z1	Pasteurella_virus	6.3e-31	43.0
WP_004213110.1\|623820_624105_-	hypothetical protein	NA	NA	NA	NA
WP_004131559.1\|624095_624296_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
WP_004213109.1\|624295_624811_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	4.1e-40	49.4
WP_032457346.1\|624923_625781_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	1.1e-69	58.1
WP_023328071.1\|625830_626865_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	3.6e-96	50.0
WP_004213106.1\|626874_627714_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	5.6e-95	66.3
WP_060579218.1\|627870_629598_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	2.6e-232	67.9
WP_017898633.1\|629591_630653_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.2e-142	68.7
WP_127717256.1\|631187_631937_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_060579220.1\|632223_633273_-	FRG domain-containing protein	NA	NA	NA	NA
WP_060579221.1\|633345_634044_-	hypothetical protein	NA	NA	NA	NA
WP_060579222.1\|634578_637206_-	replication endonuclease	A0A0M4RTM8	Salmonella_phage	1.7e-190	50.7
WP_060579223.1\|637223_638180_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	6.6e-84	52.9
WP_048978239.1\|638412_638979_-	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	3.6e-13	32.6
WP_032457341.1\|638975_639200_-	hypothetical protein	NA	NA	NA	NA
WP_004131520.1\|639268_639541_-	hypothetical protein	NA	NA	NA	NA
WP_032457340.1\|639556_639934_-	hypothetical protein	NA	NA	NA	NA
WP_004131515.1\|639949_640168_-	hypothetical protein	A0A0M5M1I3	Salmonella_phage	4.7e-06	49.1
WP_017898643.1\|640188_640467_-	hypothetical protein	Q1JS60	Enterobacteria_phage	2.0e-41	87.6
WP_048024533.1\|640588_640888_+	helix-turn-helix transcriptional regulator	Q1JS83	Enterobacteria_phage	3.0e-43	85.9
WP_017898644.1\|641003_641987_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	8.4e-151	79.8
WP_004176549.1\|642252_643266_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
642104:642121	attR	NA	NA	NA	NA
WP_004150782.1\|643323_643425_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004213093.1\|643424_643499_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|643616_643742_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|643801_644065_-	DUF2534 family protein	NA	NA	NA	NA
WP_049006378.1\|644195_644834_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|644923_645838_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4

DBSCAN-SWA_4

668247 : 714055

Salmonella_phage(16.67%)

plate,integrase,head,terminase,portal,tail,tRNA,capsid

attL 701336:701349|attR 710774:710787

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032437619.1\|668247_668619_-	hypothetical protein	K7PGV5	Enterobacterial_phage	8.3e-27	51.9
WP_040174799.1\|669474_669897_-	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_073553305.1\|669974_670184_-	Hin recombinase	A0A286S1P7	Klebsiella_phage	4.5e-22	77.9
WP_077259490.1\|670341_673947_-	SGNH/GDSL hydrolase family protein	A0A286S1P0	Klebsiella_phage	3.9e-20	51.6
WP_049006245.1\|674033_674996_+	glycosyltransferase	A0A1V0SAH6	Catovirus	1.6e-08	32.7
WP_071717287.1\|675013_675898_-	hypothetical protein	NA	NA	NA	NA
WP_047719060.1\|675929_676607_-	YmfQ family protein	NA	NA	NA	NA
WP_049006248.1\|676603_677752_-\|plate	baseplate J/gp47 family protein	R9TN81	Rhizobium_phage	5.8e-18	27.8
WP_077259491.1\|678183_678732_-\|plate	phage baseplate assembly protein	A0A077KAY0	Edwardsiella_phage	5.4e-06	33.3
WP_049006252.1\|678767_679847_-\|tail	tail protein	Q8HAC0	Salmonella_phage	3.1e-37	30.5
WP_049006254.1\|679843_681244_-	hypothetical protein	NA	NA	NA	NA
WP_049006255.1\|681289_683164_-	hypothetical protein	T1SBJ1	Salmonella_phage	6.5e-19	45.0
WP_049006256.1\|683305_683584_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_048294781.1\|683585_683954_-\|tail	phage tail protein	NA	NA	NA	NA
WP_049006257.1\|683957_685469_-\|tail	tail protein	B5TK67	Pseudomonas_phage	1.5e-106	44.2
WP_032735091.1\|685465_685651_-	DUF2635 domain-containing protein	A0A2P9JZJ7	Alteromonadaceae_phage	2.8e-07	46.8
WP_049006258.1\|685654_686200_-	hypothetical protein	NA	NA	NA	NA
WP_071717286.1\|686196_686556_-	hypothetical protein	NA	NA	NA	NA
WP_049006261.1\|686561_686960_-	hypothetical protein	NA	NA	NA	NA
WP_049006262.1\|686931_687981_-\|capsid	major capsid protein	V5Q8X6	Xylella_phage	3.5e-38	29.1
WP_049006264.1\|688079_688484_-\|head	head decoration protein	A0A0C5AN05	Bacteriophage	2.4e-11	37.6
WP_049006266.1\|688483_689065_-	hypothetical protein	NA	NA	NA	NA
WP_049006268.1\|689066_689933_-	S49 family peptidase	A0A248XD65	Klebsiella_phage	2.0e-47	46.8
WP_049006270.1\|689929_691567_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	4.0e-89	36.2
WP_032735077.1\|691566_691830_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
WP_053090091.1\|691838_693962_-\|terminase	terminase	A0A2K9V3X4	Faecalibacterium_phage	4.2e-99	35.6
WP_048294759.1\|693903_694488_-	hypothetical protein	NA	NA	NA	NA
WP_049006301.1\|694732_695371_-	hypothetical protein	NA	NA	NA	NA
WP_130939985.1\|695653_696019_+	hypothetical protein	NA	NA	NA	NA
WP_032735066.1\|696008_696242_+	DUF4199 domain-containing protein	NA	NA	NA	NA
WP_049006276.1\|696561_696951_-	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	2.5e-21	44.4
WP_048294746.1\|696947_697472_-	lysozyme	Q71TF3	Escherichia_phage	1.3e-49	54.2
WP_049006278.1\|697455_697776_-	hypothetical protein	O64361	Escherichia_phage	5.3e-22	50.0
WP_049006280.1\|698507_699086_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.3e-50	57.2
WP_071717285.1\|699099_700080_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.1e-134	66.9
WP_000779146.1\|700092_700470_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.3e-48	73.6
WP_049006283.1\|700479_701289_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	3.5e-110	69.3
WP_049006285.1\|701285_702254_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	5.5e-86	66.4
701336:701349	attL	NA	NA	NA	NA
WP_004184738.1\|702243_702423_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.6e-15	75.0
WP_004213338.1\|702660_703122_-	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_001191665.1\|703156_703399_-	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.3e-25	80.3
WP_000690183.1\|703496_704192_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	2.7e-87	71.3
WP_049006289.1\|704724_705642_+	recombination-associated protein RdgC	A0A1W6JP69	Morganella_phage	5.2e-46	36.9
WP_040186300.1\|705729_706029_+	hypothetical protein	K7PJS4	Enterobacterial_phage	1.0e-14	47.8
WP_049006292.1\|706028_706814_+	hypothetical protein	C7BGF1	Burkholderia_phage	1.5e-62	52.5
WP_025714330.1\|706941_707250_+	hypothetical protein	NA	NA	NA	NA
WP_114138601.1\|707262_707679_+	hypothetical protein	NA	NA	NA	NA
WP_023283338.1\|707678_707891_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	2.4e-10	43.9
WP_040176408.1\|707887_708283_+	hypothetical protein	A0A077K9V6	Edwardsiella_phage	1.0e-06	33.8
WP_040176407.1\|708275_708494_+	hypothetical protein	G8C7S3	Escherichia_phage	3.5e-09	53.4
WP_000089156.1\|708794_709031_+	excisionase	NA	NA	NA	NA
WP_000741346.1\|709020_710163_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	9.1e-173	82.2
WP_004150800.1\|710275_711526_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
710774:710787	attR	NA	NA	NA	NA
WP_004150801.1\|711766_712417_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_004150802.1\|712433_712892_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|712948_714055_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_5

954483 : 963946

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016532437.1\|954483_956205_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_004141853.1\|956231_956951_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|957304_957523_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|957642_959922_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|959952_960270_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|960595_960817_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|960893_962834_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_004191152.1\|962830_963946_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_6

3228750 : 3261179

uncultured_Caudovirales_phage(78.57%)

integrase,head,terminase,portal,protease,tail,tRNA,capsid

attL 3246356:3246373|attR 3261793:3261810

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004150007.1\|3228750_3229698_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_004174081.1\|3229712_3230222_-	peptide deformylase	E3SLL2	Synechococcus_phage	1.5e-18	40.3
WP_002919139.1\|3230350_3231475_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|3231446_3231920_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|3231945_3232488_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|3232492_3233065_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|3233068_3233887_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|3233883_3234141_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_023279307.1\|3234116_3234671_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|3240464_3240686_-	membrane protein	NA	NA	NA	NA
WP_004144975.1\|3240979_3244090_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|3244102_3245242_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004900945.1\|3245620_3246274_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
3246356:3246373	attL	NA	NA	NA	NA
WP_004149996.1\|3246543_3247764_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	3.5e-154	63.0
WP_019077825.1\|3247763_3248414_+	hypothetical protein	NA	NA	NA	NA
WP_019077824.1\|3248994_3249279_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_019077822.1\|3250338_3250542_-	hypothetical protein	NA	NA	NA	NA
WP_032660562.1\|3250684_3250873_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_060579284.1\|3250865_3251060_+	hypothetical protein	NA	NA	NA	NA
WP_060579285.1\|3251056_3251269_+	hypothetical protein	NA	NA	NA	NA
WP_060579286.1\|3251258_3253922_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	5.6e-274	54.6
WP_060579287.1\|3254276_3254579_+	hypothetical protein	A0A2H4JB54	uncultured_Caudovirales_phage	2.0e-42	86.3
WP_060579288.1\|3254811_3255978_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	2.2e-214	99.2
WP_060579289.1\|3256029_3256590_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	3.8e-100	97.8
WP_060579290.1\|3256591_3257833_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	3.6e-231	96.5
WP_004150961.1\|3257829_3258165_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|3258161_3258461_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_001547823.1\|3258460_3258904_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	3.3e-78	92.5
WP_001547822.1\|3258896_3259049_+	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	1.3e-15	84.0
WP_019077808.1\|3259177_3259534_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	3.3e-57	94.1
WP_019077807.1\|3259517_3261179_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	97.1
3261793:3261810	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3431528 : 3475908

Erwinia_phage(24.39%)

plate,integrase,head,terminase,lysis,portal,holin,tail,tRNA,capsid

attL 3422998:3423012|attR 3462602:3462616

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3422998:3423012	attL	NA	NA	NA	NA
WP_060579293.1\|3431528_3434771_-	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	7.3e-34	33.3
WP_004174237.1\|3434775_3435390_-	acid-sensing system DNA-binding response regulator EvgA	NA	NA	NA	NA
WP_004900718.1\|3435691_3436057_+	hdeB family protein	NA	NA	NA	NA
WP_004889691.1\|3436125_3436398_-	hypothetical protein	NA	NA	NA	NA
WP_032454123.1\|3437064_3438102_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	2.7e-123	64.7
WP_032454122.1\|3438108_3438693_-	phage repressor protein CI	F1BUS8	Erwinia_phage	1.0e-31	38.7
WP_004195891.1\|3438812_3439034_+	hypothetical protein	NA	NA	NA	NA
WP_032454121.1\|3439064_3439574_+	phage regulatory CII family protein	Q6K1F8	Salmonella_virus	4.6e-84	93.5
WP_032454120.1\|3439581_3439782_+	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	1.1e-30	93.9
WP_032454119.1\|3439745_3440084_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	8.0e-53	92.0
WP_060579294.1\|3440152_3440380_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	3.0e-19	73.3
WP_042943327.1\|3440379_3440601_+	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	4.0e-29	87.7
WP_047718529.1\|3440601_3440883_+	DUF5405 family protein	A0A218M4I8	Erwinia_phage	3.7e-43	91.4
WP_162779380.1\|3441031_3443104_+	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	89.9
WP_060579296.1\|3443218_3443659_+	DinI family protein	A0A218M4I0	Erwinia_phage	5.4e-57	81.8
WP_060579297.1\|3443791_3444526_-	hypothetical protein	NA	NA	NA	NA
WP_060579298.1\|3445012_3446056_-\|portal	phage portal protein	M1SV64	Escherichia_phage	1.5e-166	82.1
WP_015959022.1\|3446055_3447825_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	2.8e-306	87.9
WP_060579299.1\|3447990_3448845_+\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	2.4e-117	75.4
WP_032440340.1\|3448918_3449977_+\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	3.5e-163	83.5
WP_162779381.1\|3450004_3450724_+\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	1.8e-94	79.2
WP_025710538.1\|3450820_3451327_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	5.4e-61	84.3
WP_060579301.1\|3451326_3451530_+\|tail	phage tail protein	S4TTA0	Salmonella_phage	1.0e-23	77.6
WP_019725381.1\|3451534_3451825_+\|holin	holin	A0A0M5M1H1	Salmonella_phage	5.0e-35	79.6
WP_060579302.1\|3451811_3452309_+	glycoside hydrolase family 104 protein	O80309	Escherichia_phage	3.0e-80	84.2
WP_060579303.1\|3452305_3452737_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	2.0e-40	64.7
WP_060579304.1\|3452711_3452870_+	hypothetical protein	A0A218M4L1	Erwinia_phage	8.4e-13	72.0
WP_060579305.1\|3452832_3453300_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	9.7e-65	76.1
WP_060579306.1\|3453292_3453742_+	phage virion morphogenesis protein	A0A0M3UL83	Salmonella_phage	4.4e-46	61.9
WP_023317710.1\|3453761_3454307_+	hypothetical protein	NA	NA	NA	NA
WP_060579307.1\|3454316_3455675_+	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA
WP_060579308.1\|3455784_3456426_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	2.9e-91	77.0
WP_060579309.1\|3456422_3456770_+\|plate	baseplate assembly protein	Q7Y4D7	Escherichia_virus	4.9e-45	77.4
WP_060579310.1\|3456774_3457683_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	9.9e-114	71.5
WP_162779382.1\|3457690_3458278_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.2e-51	56.2
WP_141769590.1\|3458171_3460511_+	hypothetical protein	NA	NA	NA	NA
WP_060579313.1\|3460510_3461293_+	hypothetical protein	NA	NA	NA	NA
WP_060579314.1\|3461314_3462388_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	8.0e-30	41.9
WP_060579315.1\|3462498_3463680_+\|tail	phage tail sheath protein	Q7Y4D1	Escherichia_virus	5.1e-195	86.1
3462602:3462616	attR	NA	NA	NA	NA
WP_014343412.1\|3463693_3464209_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	3.2e-69	75.6
WP_060579316.1\|3464268_3464544_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.4e-31	76.1
WP_014343413.1\|3464576_3464696_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	2.0e-14	92.3
WP_060579317.1\|3464688_3467127_+\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	4.5e-294	72.0
WP_032454094.1\|3467143_3467623_+\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	4.5e-65	77.1
WP_060579318.1\|3467622_3468783_+	phage late control D family protein	Q7Y4C6	Escherichia_virus	3.7e-174	80.5
WP_071717250.1\|3468831_3469239_-	hypothetical protein	S4TTB4	Salmonella_phage	1.3e-25	43.6
WP_032454093.1\|3469331_3469550_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	1.0e-32	84.7
WP_002917636.1\|3469918_3470425_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_004174339.1\|3470524_3472366_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7
WP_004149864.1\|3472584_3474330_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.6e-75	38.7
WP_001144069.1\|3474441_3474657_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_004900709.1\|3474894_3475908_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	59.2

DBSCAN-SWA_8

4204685 : 4256230

Cronobacter_phage(25.0%)

head,terminase,integrase,holin

attL 4240673:4240688|attR 4260865:4260880

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023280390.1\|4204685_4205144_-	nucleoside deaminase	A0A0B5J096	Pandoravirus	1.9e-12	33.9
WP_004149227.1\|4205276_4206185_+	transcriptional regulator CynR	A0A2P0ZL89	Lactobacillus_phage	4.6e-10	24.2
WP_049006705.1\|4206194_4207076_-	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	1.5e-05	56.8
WP_002913367.1\|4207443_4207926_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
WP_023301637.1\|4208262_4208463_-	transcriptional regulator	K7P7V0	Enterobacteria_phage	3.7e-29	86.4
WP_060579327.1\|4208459_4208693_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.7e-07	48.1
WP_060579328.1\|4208694_4208913_-	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	2.4e-10	47.2
WP_060579329.1\|4208909_4209959_-	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	5.1e-146	68.3
WP_060579330.1\|4209955_4210612_-	DNA methyltransferase	G8C7S6	Escherichia_phage	9.3e-114	88.0
WP_004151308.1\|4210608_4210767_-	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	3.0e-10	60.8
WP_032434117.1\|4210763_4211444_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	3.9e-123	92.9
WP_060579331.1\|4211440_4212286_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.5e-68	59.2
WP_016529276.1\|4212301_4212586_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	8.6e-40	79.8
WP_004151303.1\|4212674_4212869_-	hypothetical protein	NA	NA	NA	NA
WP_074183191.1\|4212861_4212987_-	hypothetical protein	NA	NA	NA	NA
WP_060579332.1\|4213305_4213938_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	6.0e-33	43.0
WP_023284762.1\|4214037_4214253_+	helix-turn-helix transcriptional regulator	Q716D6	Shigella_phage	4.2e-15	60.9
WP_004141720.1\|4214302_4214623_+	hypothetical protein	A0A0M4RU01	Salmonella_phage	3.8e-36	68.9
WP_004151298.1\|4214709_4214856_+	hypothetical protein	NA	NA	NA	NA
WP_162779384.1\|4214896_4215748_+	DNA replication protein	F1C5C3	Cronobacter_phage	2.0e-84	56.0
WP_162779383.1\|4215752_4217168_+	AAA family ATPase	Q9MCT4	Escherichia_phage	3.7e-184	67.7
WP_004218528.1\|4217167_4217470_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_101977350.1\|4217466_4217901_+	hypothetical protein	A0A193GYX5	Enterobacter_phage	3.0e-12	74.4
WP_040181701.1\|4217897_4218158_+	DUF4752 family protein	T1S9K2	Salmonella_phage	1.6e-29	75.6
WP_060579334.1\|4218264_4218744_+	ead/Ea22-like family protein	K7P6V8	Enterobacteria_phage	8.6e-08	41.0
WP_060579335.1\|4218743_4218956_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_060579336.1\|4218952_4219585_+	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	5.3e-05	32.5
WP_139618712.1\|4219963_4220317_+	hypothetical protein	NA	NA	NA	NA
WP_060579338.1\|4220671_4221127_+	hypothetical protein	K7P7B8	Enterobacteria_phage	1.0e-55	69.5
WP_071717292.1\|4221126_4221297_+	hypothetical protein	G8C7V4	Escherichia_phage	1.7e-14	72.7
WP_060579339.1\|4221289_4221925_+	NinG family protein	M9NYX8	Enterobacteria_phage	1.9e-79	76.1
WP_060579340.1\|4221921_4222062_+	YlcG family protein	NA	NA	NA	NA
WP_004884209.1\|4222058_4222559_+	phage antitermination Q family protein	G8C7V7	Escherichia_phage	3.3e-87	91.5
WP_060579341.1\|4223166_4223505_+	hypothetical protein	NA	NA	NA	NA
WP_019704119.1\|4224636_4224861_+\|holin	holin	M9NZI9	Enterobacteria_phage	4.0e-32	91.9
WP_019704120.1\|4224838_4225333_+	lysozyme	M9P0E5	Enterobacteria_phage	1.7e-88	95.1
WP_060579342.1\|4225329_4225680_+	hypothetical protein	H2EQH5	Salmonella_phage	7.1e-12	39.8
WP_060579343.1\|4225834_4226107_-	hypothetical protein	NA	NA	NA	NA
WP_032443192.1\|4226262_4226499_-	hypothetical protein	NA	NA	NA	NA
WP_060595339.1\|4226546_4226756_-	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_060579344.1\|4226783_4227299_+\|terminase	terminase small subunit	I6PDJ6	Cronobacter_phage	3.9e-67	76.4
WP_060579345.1\|4227298_4228771_+	hypothetical protein	A0A1W6JNY3	Morganella_phage	2.2e-248	82.3
WP_060579346.1\|4228783_4230253_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	2.4e-149	56.6
WP_060579347.1\|4230179_4231184_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.6e-117	70.7
WP_004151273.1\|4231225_4231702_+	hypothetical protein	NA	NA	NA	NA
WP_060579348.1\|4231774_4233160_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	3.0e-154	60.0
WP_004151271.1\|4233163_4233592_+	hypothetical protein	F1C5E0	Cronobacter_phage	1.6e-42	60.8
WP_004151270.1\|4233603_4234698_+	hypothetical protein	F1C5E1	Cronobacter_phage	1.7e-123	62.8
WP_060579349.1\|4234708_4234948_+	hypothetical protein	NA	NA	NA	NA
WP_060579350.1\|4234950_4235331_+	hypothetical protein	F1C5E2	Cronobacter_phage	1.6e-28	54.5
WP_049110627.1\|4235330_4235504_+	hypothetical protein	I6R0P9	Salmonella_phage	9.2e-13	52.6
WP_040246669.1\|4235503_4235866_+	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	1.3e-19	49.2
WP_060579351.1\|4235868_4236237_+	hypothetical protein	F1C5E3	Cronobacter_phage	3.8e-48	82.8
WP_060579352.1\|4236233_4236617_+	hypothetical protein	NA	NA	NA	NA
WP_063343980.1\|4236675_4237440_+	immunoglobulin domain-containing protein	G0ZNE6	Cronobacter_phage	5.5e-41	43.8
WP_060579353.1\|4237507_4238203_+	hypothetical protein	G0ZNE7	Cronobacter_phage	1.8e-62	53.7
WP_004223321.1\|4238397_4238760_-	Arc family DNA-binding protein	H6WRU6	Salmonella_phage	3.3e-12	65.6
WP_004223324.1\|4238872_4239046_+	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	5.1e-19	85.7
WP_060579354.1\|4239035_4239737_+	hypothetical protein	H6WRU8	Salmonella_phage	1.4e-38	40.6
WP_060579355.1\|4239802_4240588_+	Bro-N domain-containing protein	A0A2L1IV39	Escherichia_phage	7.1e-84	59.7
4240673:4240688	attL	NA	NA	NA	NA
WP_060579356.1\|4240681_4240894_+	hypothetical protein	H6WRV2	Salmonella_phage	8.1e-11	62.1
WP_032439739.1\|4240968_4241583_+	hypothetical protein	NA	NA	NA	NA
WP_060579357.1\|4241642_4244921_+	tape measure protein	R9TMK1	Aeromonas_phage	1.0e-192	50.4
WP_048987939.1\|4244943_4245567_+	hypothetical protein	NA	NA	NA	NA
WP_060579358.1\|4245629_4246106_+	hypothetical protein	A0A2P1MXB5	Escherichia_phage	1.5e-36	47.7
WP_048287261.1\|4246105_4246576_+	hypothetical protein	F1C5F1	Cronobacter_phage	3.4e-25	37.7
WP_016531193.1\|4246572_4246968_+	hypothetical protein	F1C5F2	Cronobacter_phage	2.3e-35	52.8
WP_060579360.1\|4246954_4249426_+	hypothetical protein	F1C5A7	Cronobacter_phage	2.2e-203	45.2
WP_114141038.1\|4249511_4253087_+	SGNH/GDSL hydrolase family protein	A0A286S1P0	Klebsiella_phage	8.1e-18	56.0
WP_060579361.1\|4253322_4253640_+	hypothetical protein	K7PGV5	Enterobacterial_phage	3.7e-23	53.5
WP_047693700.1\|4253814_4254975_-\|integrase	tyrosine-type recombinase/integrase	Q716F9	Shigella_phage	8.0e-193	85.3
WP_004149224.1\|4255300_4256230_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	6.7e-134	81.4
4260865:4260880	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4478195 : 4485100

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004180551.1\|4478195_4479059_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004180550.1\|4479069_4479843_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004151134.1\|4480083_4480980_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|4481222_4482584_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|4482902_4483625_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|4483621_4485100_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012988

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP012989

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP012987

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection