CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009827	Xylella fastidiosa strain Pr8x plasmid pXF39, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP009826	Xylella fastidiosa strain Pr8x, complete genome	3 crisprs	DEDDh,Cas9_archaeal,csa3,DinG	6	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009826_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009826_1

924328-924540

Orphan

Consensus_repeat	Method
CAACACCGCCGGCACCCTCAGCGCCG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP009826_1

>merge|NZ_CP009826|1|924328-924540|CRISPRCasFinder
CAACCGCGGCGGCACCATCGACTCCCAGACCGCCACCCACCTGCACACCACCACCCTCGACAACACCACCGCCGGACACATCAGCAGCAGCGGCACCCTCCAGATTGACGGCACCACCCTCACCAACACCGGCGGCCGCCTCCACAGCGGCGGCGACACCCGCCTCCACCTCCAAGACACCCTGAACAACCACGACGGCCGCATCACCGCCGC

>NZ_CP009826|1|1|924328-924540|CRISPRCasFinder
CAACCGCGGCGGCACCATCGACTCCC	AGACCGCCACCCACCTGCACAC
CACCACCCTCGACAACACCACCGCCG	GACACATCAGCAGCAGCGGCACCCTCCAGATTGACGGCACCACCCTCAC
CAACACCGGCGGCCGCCTCCACAGCG	GCGGCGACACCCGCCTCCACCTCCAAGACACCCTGAA
CAACCACGACGGCCGCATCACCGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009826.1\|WP_010894655.1\|912811_914263_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP009826.1\|WP_023907516.1\|920932_921334_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_075584628.1\|939524_939749_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009826.1\|WP_010894641.1\|936610_937003_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_031336451.1\|918175_918625_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009826.1\|WP_060870410.1\|932419_932836_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009826.1\|WP_031336473.1\|937413_938520_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283284
NZ_CP009826.1\|WP_031336449.1\|917526_918093_-\|elongation-factor-P-like-protein-YeiP	unknown	unknown	gnl\|CDD\|131233
NZ_CP009826.1\|WP_031336454.1\|920205_920598_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_023907514.1\|915840_917229_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP009826.1\|WP_042463324.1\|936268_936601_+\|hemagglutinin	unknown	unknown	gnl\|CDD\|283284
NZ_CP009826.1\|WP_010894656.1\|911303_912737_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP009826.1\|WP_031336474.1\|938531_938909_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_010894654.1\|914396_915638_-\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP009826.1\|WP_075584627.1\|939156_939381_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372824
NZ_CP009826.1\|WP_060870414.1\|931860_932238_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_031336455.1\|920655_920928_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009826.1\|WP_081089895.1\|932866_935710_+\|hemagglutinin-related-protein	unknown	unknown	gnl\|CDD\|379124
NZ_CP009826.1\|WP_031336471.1\|935714_936098_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_023907513.1\|910642_911299_-\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|236415

Protein	Function_ID	Function_description	E-value
NZ_CP009826.1\|WP_010894655.1\|912811_914263_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	9.62397e-130
NZ_CP009826.1\|WP_023907516.1\|920932_921334_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	9.57436e-47
NZ_CP009826.1\|WP_010894641.1\|936610_937003_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	7.96913e-52
NZ_CP009826.1\|WP_031336449.1\|917526_918093_-\|elongation-factor-P-like-protein-YeiP	gnl\|CDD\|131233	TIGR02178, Elongation_factor_P-like_protein, elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae. [Protein synthesis, Translation factors].	2.8397e-112
NZ_CP009826.1\|WP_031336471.1\|935714_936098_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	3.43906e-53
NZ_CP009826.1\|WP_031336473.1\|937413_938520_+\|hypothetical-protein	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	2.4133e-06
NZ_CP009826.1\|WP_081089895.1\|932866_935710_+\|hemagglutinin-related-protein	gnl\|CDD\|379124	pfam13332, Fil_haemagg_2, Haemagluttinin repeat.	9.42086e-43
NZ_CP009826.1\|WP_031336454.1\|920205_920598_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	1.68367e-44
NZ_CP009826.1\|WP_023907514.1\|915840_917229_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.11815e-127
NZ_CP009826.1\|WP_042463324.1\|936268_936601_+\|hemagglutinin	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	2.08295e-09
NZ_CP009826.1\|WP_010894656.1\|911303_912737_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.87742e-122
NZ_CP009826.1\|WP_031336474.1\|938531_938909_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	1.121e-47
NZ_CP009826.1\|WP_010894654.1\|914396_915638_-\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP009826.1\|WP_060870414.1\|931860_932238_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	1.16914e-47
NZ_CP009826.1\|WP_075584627.1\|939156_939381_+\|hypothetical-protein	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	3.9507e-19
NZ_CP009826.1\|WP_023907513.1\|910642_911299_-\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|236415	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase.	6.55432e-116

>NZ_CP009826.1|WP_023907516.1|920932_921334_+|DUF596-domain-containing-protein
MLTQEQIDFIYEDLIHAFDFLWFNIGHAYGMYAAQTDKDSFAERKNDFLFLLSKLLDEGKLKLAKKGKFLSGTTTELVEMFRKSFPDSDEAVDLGGAGIWFFTDECPAGAVWVFKEEGENEQGENNEDCYLWT
>NZ_CP009826.1|WP_031336455.1|920655_920928_+|hypothetical-protein
MSDTAKAFESQELSDQQIKDYAQELAGNISLKEIRPGIYVSKQEGKAILQLRSVFSSQELSEWRWVITFLNFPDLMAEVSNRKAIELIFR
>NZ_CP009826.1|WP_031336454.1|920205_920598_+|DUF596-domain-containing-protein
MLTEEQIDIIREGPLYFLEIIWFRIGQMYGLSPGQIDHDSFEERKNDLFFLLGKLLDEGQIKIGNHKGNFISGPTAALVEMFRNSFPDSDEEAQTAWFVTECPGGIVWVLKGQGEKGQDVYKWWLFTDEK
>NZ_CP009826.1|WP_031336451.1|918175_918625_-|hypothetical-protein
MSAIVLAVALAAGQVKEPPAAVGMSESQAEQSAMLLAHCAGVWDWMGNIEKVAGKPSRVEQFHRKADEAETAAMWVLASQHYVATGNTASGAHWKSLTRPKREAGLAHMNALAEPGQEKASLAAIKGCQGMLQEQEKILHMMQKTKVKQ
>NZ_CP009826.1|WP_031336449.1|917526_918093_-|elongation-factor-P-like-protein-YeiP
MKASEMKKGSIVEYNNGTYQIRDIQRSSPQGRGGNVRFRFVMYSVPGGSKLEASFDADEMLTAVELLRREASFSYKDGEAFVFLDEEDYTLYTLEAEAIGDNAGYISEGLSGCYVQLIDASPVALQLPQHVVLEVVDTPPELKGGTATKRPKPAKLITGIEVMVPEYITTGERILVNTTTGAFGGRAS
>NZ_CP009826.1|WP_023907514.1|915840_917229_+|FAD-binding-oxidoreductase
MNDSRLTSLHQTLPTLRLKTEPADLQHYGRDWTRRFTPAPLAIALPATVQEVQAIVRWANDAHIAIVPSGGRTGLSGGAMATNGELVLSLERMNKMLRFDPMDRTMTVQAGMPLEAVQAAARQHGLLYPVDFAARGSCSIGGTIATNAGGIRVVRYGNTREWIAGLNVVTGTGELLTLNHALIKNSSGYDFRHLMIGSEGTLGIVVEATLRLTDPPPPTKVMLLALPTFDVLMQVFAAFRAQLQIEAFEFFTQRALPHVLAHGAQAPFEHPYPYYVVTEFPCADATQETTALTVFETCMEQGWVLDGVISQSDAQAAQLWRLRESITESIAPYTPYKNDIAVRIAAMPAFLEQAQALLSQAYPEFEVLWFGHIGDGNLHINVLKPHTVPQADFIHTCEHVTALLADLLQRFRGSISAEHGIGLIKKPYLDSTRSPAEIALMRQLKRAFDPKWILNPGKVFDP
>NZ_CP009826.1|WP_010894654.1|914396_915638_-|phosphoglycerate-dehydrogenase
MPPTKTSFPKQDIRILLLEGVSHSGIETFRAAGYSQIKIHTTSLPEEALQAEIAEAHIIGIRSRTQLNAEVLGHAKRLMAIGCFCIGTNQVDLDTAELSGIPVFNAPYSNTRSVAELIIAEAILLLRGIPQKNAECHRGGWSKSAINSHEARGKVLGIVGYGHIGTQVSVLAEAMGMQVIFYDIESKLSLGNARPAASLDELLGIADVVTLHVPETAATKNMLGHAELARMKPGAHLINASRGTVVEIDALDAALVSGHLGGAAVDVFPSEPKGNSDPFISPLSRHDNVILTPHIGGSTLEAQDNIGIEVAAKLIRYSDNGSTLSAVNFPEVSLPEHVGSMRLLHIHRNVPGVLSHINELFSRHNVNIDGQFLRTDATLGYVVIDIGASQTQALALKEALTQVPGTLRTRLLY
>NZ_CP009826.1|WP_010894655.1|912811_914263_-|amino-acid-permease
MLKKHLFIVKPIEPTNHTGTGKGETQLKRSLTAGQLVMLGIGAVIGAGIFVLSGHAAAEYAGPAVVLSYILAGIACALAGLCYAEFAAMLPVSGSAYSYAYATLGEFTAWFIGWNLVLEYMFSASTVAVGWSGYLNSFLSSFGYGLPASLSSAPLDVVDGRLIYSGGLINLPAVAIVAAISGLCYVGITQSAFVNSITVAIKVSVIVLFIAFAARYVNPDNWVPFVPDNAAPGKYGMEGVIRGAAVVFFSYIGFDAVSTTAGEAKNPQRDMPIGILGSLAICTVIYIAFSGVLTGLMHYSQLDTPKPVATALETYPTLSWLKHVVEIGAIAGLSSTMLMMLMAQPRIFYAMSQDGLLPKLLSKVHPKFQTPHVGTLLVGACACTLAGLFPISLLGDLVSMGTLLAFATVCIGIVVLRRTRPDLPRPFRVPMYWVIAPAGAAACLYLFWQPFTEHWPLMVGWTVLGLVMYGLYGYHHSKLRRGG
>NZ_CP009826.1|WP_010894656.1|911303_912737_-|amino-acid-permease
MFKQLWATKLSQPSQDSAEGLSLQRVLGVWGLTALGIGAVIGGGIFVITGQAAANHAGPAIMLSFALAAICCTFCALAYAEFAAMVPVSGSAYTYTYATFGELAAWFIGWMLVLEYGVSAAAVAVSWSGYFLSLLQHLGIDLPAALVNAPLDGTLHATGAIANLPAATIVLLLTWLCYFGIRKSSKINIAMVALKSGLILLIIGVGWKYVNPDYWQPFIPPNQGPGKYGWDGVLHGASMVFFAYIGFEAVSVAAQESHRPQRDLPISMMSALAICTVLYIMMAAVMTGLVPYTQLGTDEPVVTAVAAHPQLGWLRVVVEIGALVGLSSVVLVMLIGQPRIFMIMAGDGLLPPIFSTIHSKHRTPHINTVITGLGIALLAAVFPLDVLGELTSMGTLIAFAAVCAGVLILRCTRPDLPRPFRMPAAWLFCSAGVLSCITLLSAMTRHNWMLMSVWTVLGFALYFGYGYRHSKLHREST
>NZ_CP009826.1|WP_023907513.1|910642_911299_-|methylthioribulose-1-phosphate-dehydratase
MNATSTPSLPYDANRLRELAHLLIDTISEFAQAGWTPATSSNFSHRLDEHHVAITVSGRDKRYLTEEDIMAVDLDGNAVGHPHTPSAETLLHTQLYRRFPEIDCVLHTHSPTQTVASRVYAGAGNISLKDYELLKAFEGHSTHETTLDVPVFCNTQNMNILAAQVDTLLDKQRMWGYLINGHGMYTWGNTLADARRHLEALEFLLHCELNLLKLRGYL
>NZ_CP009826.1|WP_060870414.1|931860_932238_+|DUF596-domain-containing-protein
MLTQQQIDHICEDLGGALDGVWYQIGYAHGITGIQVDPASFEERKNDFLFLIRKLLDEGRLKLAKNGEFIPGTTEELVEMFRSSFPASDEELETGTWFFFDECPAGAVWVFKGEGENGEDYYEWT
>NZ_CP009826.1|WP_060870410.1|932419_932836_+|hypothetical-protein
MNFIYPRSKVFIKLFIIAVFCSGHLYAQDATSDLEKDKEKAISQALDNLMDIYLKIQKDALSAVAVKRSCSKIYPQLKEKFEANIVSGKGGFEKRIREEMKKLEASKDPYVLGQIDGASMMLFNENVMKSECKSFSGM
>NZ_CP009826.1|WP_081089895.1|932866_935710_+|hemagglutinin-related-protein
MRPQWAGLTTALGAKNTIDAVRQDPRALGGLNASLTVGRSTHDSTTTTTTSTAAGSNVTAGGNVRISATGDGTASTLTIQGSDVRGDTMTSLKADGDIALLAAQNTVTNQRDNRGRSAGVGVAVNLGSGGTSAGLTAHASTSTGSGQSTDLTWSNSHVGGGNLLAIETGGDLLMKGAIGTAKHVIADIAGNLRIESLQDTHQYRSTDRSLGGSLTAGAGFSGSANLNHQTIRSDYASVTEQSGLFTGDGGYQLTVGGQTHLIGGAITSSLSAIHNGLNSLDTGTLTVQDIENHATYTATQVNLGGGYSRNGGTVGTDQQGHAATATHVPGTTLPSHNGLSASPPSAMTARDSSHSTTYSGISQGALTIRDPAAQHALTGHTVAETIAGLNRDILTDTATSNALTPIFDEQRINAGFDIVSGLQRETGIFLNNRAAEADLKTRQATAAEQAAHDPTNGFNDQQRQALREQAIALTNEAHALKDAWGPGGTYRQITTALAAGASGNVSAASSDLAKNMIVNYVQQQGATAIGHWVATGQLTEGSPLHAALHALLACAGAAASQQHCSSGAQGAAASSVLTGLFSDPRPEDTAQDREAKRNLITSIVTGIASIGNTDPATATHAAIAAVDNNWLAAKQYVQMLNEEFEAATEKEKGRLEEEKVRAKWREIDARQNKLTADGLLKGLKESGINDINGLEHVILHPVDTFHELEKILTHPTLLLQLGERAVQELLNKVSRMSEALLVGGDQHAQQFGEDLGSVIADVGVALAAAGTFKAAEILGEAGINLSKDVLEGMATSKANQLPHIEVVDTAKLPLLVQYEKYVDNAVSLIDKRHPNNQFIISGKQLEPLPYDPKVPGGSNKAGNVKVFPSEMLTDKEIRQHAEVWARGAPFKEVKPGVYVADVSDGTKVTLRSVSSSDQVTKARWTLDIRDNPKLREVTKETVEFKFR
>NZ_CP009826.1|WP_031336471.1|935714_936098_+|DUF596-domain-containing-protein
MLTQEQIDFFCGRSGEPLHFIWGYIEDAYRIPPQRPDPNSFEERKNDFFFIIGKLLDEGLLKLGNRKGEFFTDTTAELVDKFRSCFPASDEELIEGIWLVIEECPFVAVWVHKGEGKDGEDYHEWAF
>NZ_CP009826.1|WP_042463324.1|936268_936601_+|hemagglutinin
MISRKQLEPLPYDPNVPGGSNKAGNVRVFKSEALTDKQIMNYAQQLAGDVPLKETRTPGVYMAELSDGTKVTLRSVSSSDQVTKARWTIDIDKNPSLREVTNKKVELKFR
>NZ_CP009826.1|WP_010894641.1|936610_937003_+|DUF596-domain-containing-protein
MLTQEQLDDIYESLGCPLHFLWSYIGDAHGLSHDQVDPDSFEERKNDFFFLVGKLLDDGLLKLGNRKTELIMEGTAVELVEMFRKSLPASDEEIDQEVGGLWFFTDCPFVAAWVYKGTGENGEDEYDWCF
>NZ_CP009826.1|WP_031336473.1|937413_938520_+|hypothetical-protein
MTALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLACAGAAGGAAAVVINSLLDRANGAEGASLSPAEKQYRTDLVTSLVAGITTAAGGDAAVSSAAARLETENNAAFIPVILGAIWLADKGITVYQAWQDIKAIRSGKKTIEQVALERGQDYVTSILVGNLAKYGLKAAMIGGRWIAGTAKEIANAEKEALKQIRNNPKGPDLTQKPPGQIIVMQQQKRLDDVKSVIGRGSQKDTLVVGGIEVKAVPYDRNVPGGSNKSGTTKVFDSQALTDAQIKDYAQQLTGGVPLKQTRTPGVYIAELSDGTKVTLRSESSSKASTQARWTIDIRDNPSLRGVTKERVELKFR
>NZ_CP009826.1|WP_031336474.1|938531_938909_+|DUF596-domain-containing-protein
MLTQEQIDFIYEDLEHPLHFLWSDIERVHGIIGTKKDPDSFEERKKDFLFIIGKLLDEGRLKLAKKGKFMTGTTEEQVEMFRKSFPASDEEMELGAWFFADDCPAGAVWVLKGEGENGEDYYEWT
>NZ_CP009826.1|WP_075584627.1|939156_939381_+|hypothetical-protein
MTDAAGRVKSIEANLFLKEMDRNTYQQRCVGKCGEVGDEGGHLIASSLGRAGDRINLVSQASALNRIGWRKMEK
>NZ_CP009826.1|WP_075584628.1|939524_939749_-|hypothetical-protein
MKASYTLPEKTSHFQKMSLPALITLYSKHRFLKFDSLEQQNTHRDLLKVNAFLMGNIPTNVFRAAPVHQNKSPK

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Crispr_ID: NZ_CP009826_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009826_2

924700-924849

Orphan

Consensus_repeat	Method
CAACACCGCCGGCACCCTCAGCGCCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP009826_2

>merge|NZ_CP009826|2|924700-924849|CRISPRCasFinder
CAACACCGCCGGCACCCTCAGCGCCGCTCAAAACCTCACCCTTACCCTGAGCGACACTCTCACCAACACCGCCGGCACCCTCAGCGCCGGCGGCACCTTGGACCTCACTGCAGACCAGCTGAGCAACCACACCGGCACCCTCCTCAGCGG

>NZ_CP009826|2|2|924700-924849|CRISPRCasFinder
CAACACCGCCGGCACCCTCAGCGCCG	CTCAAAACCTCACCCTTACCCTGAGCGACACTCTCAC
CAACACCGCCGGCACCCTCAGCGCCG	GCGGCACCTTGGACCTCACTGCAGACCAGCTGAG
CAACCACACCGGCACCCTCCTCAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009826.1\|WP_010894655.1\|912811_914263_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP009826.1\|WP_023907516.1\|920932_921334_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_075584628.1\|939524_939749_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009826.1\|WP_010894641.1\|936610_937003_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_031336451.1\|918175_918625_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009826.1\|WP_060870410.1\|932419_932836_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009826.1\|WP_031336473.1\|937413_938520_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283284
NZ_CP009826.1\|WP_031336449.1\|917526_918093_-\|elongation-factor-P-like-protein-YeiP	unknown	unknown	gnl\|CDD\|131233
NZ_CP009826.1\|WP_031336454.1\|920205_920598_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_023907514.1\|915840_917229_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP009826.1\|WP_042463324.1\|936268_936601_+\|hemagglutinin	unknown	unknown	gnl\|CDD\|283284
NZ_CP009826.1\|WP_010894656.1\|911303_912737_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP009826.1\|WP_031336474.1\|938531_938909_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_010894654.1\|914396_915638_-\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP009826.1\|WP_075584627.1\|939156_939381_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372824
NZ_CP009826.1\|WP_060870414.1\|931860_932238_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_031336455.1\|920655_920928_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009826.1\|WP_081089895.1\|932866_935710_+\|hemagglutinin-related-protein	unknown	unknown	gnl\|CDD\|379124
NZ_CP009826.1\|WP_031336471.1\|935714_936098_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_023907513.1\|910642_911299_-\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|236415

Protein	Function_ID	Function_description	E-value
NZ_CP009826.1\|WP_010894655.1\|912811_914263_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	9.62397e-130
NZ_CP009826.1\|WP_023907516.1\|920932_921334_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	9.57436e-47
NZ_CP009826.1\|WP_010894641.1\|936610_937003_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	7.96913e-52
NZ_CP009826.1\|WP_031336449.1\|917526_918093_-\|elongation-factor-P-like-protein-YeiP	gnl\|CDD\|131233	TIGR02178, Elongation_factor_P-like_protein, elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae. [Protein synthesis, Translation factors].	2.8397e-112
NZ_CP009826.1\|WP_031336471.1\|935714_936098_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	3.43906e-53
NZ_CP009826.1\|WP_031336473.1\|937413_938520_+\|hypothetical-protein	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	2.4133e-06
NZ_CP009826.1\|WP_081089895.1\|932866_935710_+\|hemagglutinin-related-protein	gnl\|CDD\|379124	pfam13332, Fil_haemagg_2, Haemagluttinin repeat.	9.42086e-43
NZ_CP009826.1\|WP_031336454.1\|920205_920598_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	1.68367e-44
NZ_CP009826.1\|WP_023907514.1\|915840_917229_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.11815e-127
NZ_CP009826.1\|WP_042463324.1\|936268_936601_+\|hemagglutinin	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	2.08295e-09
NZ_CP009826.1\|WP_010894656.1\|911303_912737_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.87742e-122
NZ_CP009826.1\|WP_031336474.1\|938531_938909_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	1.121e-47
NZ_CP009826.1\|WP_010894654.1\|914396_915638_-\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP009826.1\|WP_060870414.1\|931860_932238_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	1.16914e-47
NZ_CP009826.1\|WP_075584627.1\|939156_939381_+\|hypothetical-protein	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	3.9507e-19
NZ_CP009826.1\|WP_023907513.1\|910642_911299_-\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|236415	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase.	6.55432e-116

>NZ_CP009826.1|WP_023907516.1|920932_921334_+|DUF596-domain-containing-protein
MLTQEQIDFIYEDLIHAFDFLWFNIGHAYGMYAAQTDKDSFAERKNDFLFLLSKLLDEGKLKLAKKGKFLSGTTTELVEMFRKSFPDSDEAVDLGGAGIWFFTDECPAGAVWVFKEEGENEQGENNEDCYLWT
>NZ_CP009826.1|WP_031336455.1|920655_920928_+|hypothetical-protein
MSDTAKAFESQELSDQQIKDYAQELAGNISLKEIRPGIYVSKQEGKAILQLRSVFSSQELSEWRWVITFLNFPDLMAEVSNRKAIELIFR
>NZ_CP009826.1|WP_031336454.1|920205_920598_+|DUF596-domain-containing-protein
MLTEEQIDIIREGPLYFLEIIWFRIGQMYGLSPGQIDHDSFEERKNDLFFLLGKLLDEGQIKIGNHKGNFISGPTAALVEMFRNSFPDSDEEAQTAWFVTECPGGIVWVLKGQGEKGQDVYKWWLFTDEK
>NZ_CP009826.1|WP_031336451.1|918175_918625_-|hypothetical-protein
MSAIVLAVALAAGQVKEPPAAVGMSESQAEQSAMLLAHCAGVWDWMGNIEKVAGKPSRVEQFHRKADEAETAAMWVLASQHYVATGNTASGAHWKSLTRPKREAGLAHMNALAEPGQEKASLAAIKGCQGMLQEQEKILHMMQKTKVKQ
>NZ_CP009826.1|WP_031336449.1|917526_918093_-|elongation-factor-P-like-protein-YeiP
MKASEMKKGSIVEYNNGTYQIRDIQRSSPQGRGGNVRFRFVMYSVPGGSKLEASFDADEMLTAVELLRREASFSYKDGEAFVFLDEEDYTLYTLEAEAIGDNAGYISEGLSGCYVQLIDASPVALQLPQHVVLEVVDTPPELKGGTATKRPKPAKLITGIEVMVPEYITTGERILVNTTTGAFGGRAS
>NZ_CP009826.1|WP_023907514.1|915840_917229_+|FAD-binding-oxidoreductase
MNDSRLTSLHQTLPTLRLKTEPADLQHYGRDWTRRFTPAPLAIALPATVQEVQAIVRWANDAHIAIVPSGGRTGLSGGAMATNGELVLSLERMNKMLRFDPMDRTMTVQAGMPLEAVQAAARQHGLLYPVDFAARGSCSIGGTIATNAGGIRVVRYGNTREWIAGLNVVTGTGELLTLNHALIKNSSGYDFRHLMIGSEGTLGIVVEATLRLTDPPPPTKVMLLALPTFDVLMQVFAAFRAQLQIEAFEFFTQRALPHVLAHGAQAPFEHPYPYYVVTEFPCADATQETTALTVFETCMEQGWVLDGVISQSDAQAAQLWRLRESITESIAPYTPYKNDIAVRIAAMPAFLEQAQALLSQAYPEFEVLWFGHIGDGNLHINVLKPHTVPQADFIHTCEHVTALLADLLQRFRGSISAEHGIGLIKKPYLDSTRSPAEIALMRQLKRAFDPKWILNPGKVFDP
>NZ_CP009826.1|WP_010894654.1|914396_915638_-|phosphoglycerate-dehydrogenase
MPPTKTSFPKQDIRILLLEGVSHSGIETFRAAGYSQIKIHTTSLPEEALQAEIAEAHIIGIRSRTQLNAEVLGHAKRLMAIGCFCIGTNQVDLDTAELSGIPVFNAPYSNTRSVAELIIAEAILLLRGIPQKNAECHRGGWSKSAINSHEARGKVLGIVGYGHIGTQVSVLAEAMGMQVIFYDIESKLSLGNARPAASLDELLGIADVVTLHVPETAATKNMLGHAELARMKPGAHLINASRGTVVEIDALDAALVSGHLGGAAVDVFPSEPKGNSDPFISPLSRHDNVILTPHIGGSTLEAQDNIGIEVAAKLIRYSDNGSTLSAVNFPEVSLPEHVGSMRLLHIHRNVPGVLSHINELFSRHNVNIDGQFLRTDATLGYVVIDIGASQTQALALKEALTQVPGTLRTRLLY
>NZ_CP009826.1|WP_010894655.1|912811_914263_-|amino-acid-permease
MLKKHLFIVKPIEPTNHTGTGKGETQLKRSLTAGQLVMLGIGAVIGAGIFVLSGHAAAEYAGPAVVLSYILAGIACALAGLCYAEFAAMLPVSGSAYSYAYATLGEFTAWFIGWNLVLEYMFSASTVAVGWSGYLNSFLSSFGYGLPASLSSAPLDVVDGRLIYSGGLINLPAVAIVAAISGLCYVGITQSAFVNSITVAIKVSVIVLFIAFAARYVNPDNWVPFVPDNAAPGKYGMEGVIRGAAVVFFSYIGFDAVSTTAGEAKNPQRDMPIGILGSLAICTVIYIAFSGVLTGLMHYSQLDTPKPVATALETYPTLSWLKHVVEIGAIAGLSSTMLMMLMAQPRIFYAMSQDGLLPKLLSKVHPKFQTPHVGTLLVGACACTLAGLFPISLLGDLVSMGTLLAFATVCIGIVVLRRTRPDLPRPFRVPMYWVIAPAGAAACLYLFWQPFTEHWPLMVGWTVLGLVMYGLYGYHHSKLRRGG
>NZ_CP009826.1|WP_010894656.1|911303_912737_-|amino-acid-permease
MFKQLWATKLSQPSQDSAEGLSLQRVLGVWGLTALGIGAVIGGGIFVITGQAAANHAGPAIMLSFALAAICCTFCALAYAEFAAMVPVSGSAYTYTYATFGELAAWFIGWMLVLEYGVSAAAVAVSWSGYFLSLLQHLGIDLPAALVNAPLDGTLHATGAIANLPAATIVLLLTWLCYFGIRKSSKINIAMVALKSGLILLIIGVGWKYVNPDYWQPFIPPNQGPGKYGWDGVLHGASMVFFAYIGFEAVSVAAQESHRPQRDLPISMMSALAICTVLYIMMAAVMTGLVPYTQLGTDEPVVTAVAAHPQLGWLRVVVEIGALVGLSSVVLVMLIGQPRIFMIMAGDGLLPPIFSTIHSKHRTPHINTVITGLGIALLAAVFPLDVLGELTSMGTLIAFAAVCAGVLILRCTRPDLPRPFRMPAAWLFCSAGVLSCITLLSAMTRHNWMLMSVWTVLGFALYFGYGYRHSKLHREST
>NZ_CP009826.1|WP_023907513.1|910642_911299_-|methylthioribulose-1-phosphate-dehydratase
MNATSTPSLPYDANRLRELAHLLIDTISEFAQAGWTPATSSNFSHRLDEHHVAITVSGRDKRYLTEEDIMAVDLDGNAVGHPHTPSAETLLHTQLYRRFPEIDCVLHTHSPTQTVASRVYAGAGNISLKDYELLKAFEGHSTHETTLDVPVFCNTQNMNILAAQVDTLLDKQRMWGYLINGHGMYTWGNTLADARRHLEALEFLLHCELNLLKLRGYL
>NZ_CP009826.1|WP_060870414.1|931860_932238_+|DUF596-domain-containing-protein
MLTQQQIDHICEDLGGALDGVWYQIGYAHGITGIQVDPASFEERKNDFLFLIRKLLDEGRLKLAKNGEFIPGTTEELVEMFRSSFPASDEELETGTWFFFDECPAGAVWVFKGEGENGEDYYEWT
>NZ_CP009826.1|WP_060870410.1|932419_932836_+|hypothetical-protein
MNFIYPRSKVFIKLFIIAVFCSGHLYAQDATSDLEKDKEKAISQALDNLMDIYLKIQKDALSAVAVKRSCSKIYPQLKEKFEANIVSGKGGFEKRIREEMKKLEASKDPYVLGQIDGASMMLFNENVMKSECKSFSGM
>NZ_CP009826.1|WP_081089895.1|932866_935710_+|hemagglutinin-related-protein
MRPQWAGLTTALGAKNTIDAVRQDPRALGGLNASLTVGRSTHDSTTTTTTSTAAGSNVTAGGNVRISATGDGTASTLTIQGSDVRGDTMTSLKADGDIALLAAQNTVTNQRDNRGRSAGVGVAVNLGSGGTSAGLTAHASTSTGSGQSTDLTWSNSHVGGGNLLAIETGGDLLMKGAIGTAKHVIADIAGNLRIESLQDTHQYRSTDRSLGGSLTAGAGFSGSANLNHQTIRSDYASVTEQSGLFTGDGGYQLTVGGQTHLIGGAITSSLSAIHNGLNSLDTGTLTVQDIENHATYTATQVNLGGGYSRNGGTVGTDQQGHAATATHVPGTTLPSHNGLSASPPSAMTARDSSHSTTYSGISQGALTIRDPAAQHALTGHTVAETIAGLNRDILTDTATSNALTPIFDEQRINAGFDIVSGLQRETGIFLNNRAAEADLKTRQATAAEQAAHDPTNGFNDQQRQALREQAIALTNEAHALKDAWGPGGTYRQITTALAAGASGNVSAASSDLAKNMIVNYVQQQGATAIGHWVATGQLTEGSPLHAALHALLACAGAAASQQHCSSGAQGAAASSVLTGLFSDPRPEDTAQDREAKRNLITSIVTGIASIGNTDPATATHAAIAAVDNNWLAAKQYVQMLNEEFEAATEKEKGRLEEEKVRAKWREIDARQNKLTADGLLKGLKESGINDINGLEHVILHPVDTFHELEKILTHPTLLLQLGERAVQELLNKVSRMSEALLVGGDQHAQQFGEDLGSVIADVGVALAAAGTFKAAEILGEAGINLSKDVLEGMATSKANQLPHIEVVDTAKLPLLVQYEKYVDNAVSLIDKRHPNNQFIISGKQLEPLPYDPKVPGGSNKAGNVKVFPSEMLTDKEIRQHAEVWARGAPFKEVKPGVYVADVSDGTKVTLRSVSSSDQVTKARWTLDIRDNPKLREVTKETVEFKFR
>NZ_CP009826.1|WP_031336471.1|935714_936098_+|DUF596-domain-containing-protein
MLTQEQIDFFCGRSGEPLHFIWGYIEDAYRIPPQRPDPNSFEERKNDFFFIIGKLLDEGLLKLGNRKGEFFTDTTAELVDKFRSCFPASDEELIEGIWLVIEECPFVAVWVHKGEGKDGEDYHEWAF
>NZ_CP009826.1|WP_042463324.1|936268_936601_+|hemagglutinin
MISRKQLEPLPYDPNVPGGSNKAGNVRVFKSEALTDKQIMNYAQQLAGDVPLKETRTPGVYMAELSDGTKVTLRSVSSSDQVTKARWTIDIDKNPSLREVTNKKVELKFR
>NZ_CP009826.1|WP_010894641.1|936610_937003_+|DUF596-domain-containing-protein
MLTQEQLDDIYESLGCPLHFLWSYIGDAHGLSHDQVDPDSFEERKNDFFFLVGKLLDDGLLKLGNRKTELIMEGTAVELVEMFRKSLPASDEEIDQEVGGLWFFTDCPFVAAWVYKGTGENGEDEYDWCF
>NZ_CP009826.1|WP_031336473.1|937413_938520_+|hypothetical-protein
MTALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLACAGAAGGAAAVVINSLLDRANGAEGASLSPAEKQYRTDLVTSLVAGITTAAGGDAAVSSAAARLETENNAAFIPVILGAIWLADKGITVYQAWQDIKAIRSGKKTIEQVALERGQDYVTSILVGNLAKYGLKAAMIGGRWIAGTAKEIANAEKEALKQIRNNPKGPDLTQKPPGQIIVMQQQKRLDDVKSVIGRGSQKDTLVVGGIEVKAVPYDRNVPGGSNKSGTTKVFDSQALTDAQIKDYAQQLTGGVPLKQTRTPGVYIAELSDGTKVTLRSESSSKASTQARWTIDIRDNPSLRGVTKERVELKFR
>NZ_CP009826.1|WP_031336474.1|938531_938909_+|DUF596-domain-containing-protein
MLTQEQIDFIYEDLEHPLHFLWSDIERVHGIIGTKKDPDSFEERKKDFLFIIGKLLDEGRLKLAKKGKFMTGTTEEQVEMFRKSFPASDEEMELGAWFFADDCPAGAVWVLKGEGENGEDYYEWT
>NZ_CP009826.1|WP_075584627.1|939156_939381_+|hypothetical-protein
MTDAAGRVKSIEANLFLKEMDRNTYQQRCVGKCGEVGDEGGHLIASSLGRAGDRINLVSQASALNRIGWRKMEK
>NZ_CP009826.1|WP_075584628.1|939524_939749_-|hypothetical-protein
MKASYTLPEKTSHFQKMSLPALITLYSKHRFLKFDSLEQQNTHRDLLKVNAFLMGNIPTNVFRAAPVHQNKSPK

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Crispr_ID: NZ_CP009826_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009826_3

924940-925007

Orphan

Consensus_repeat	Method
CAACACCGCCGGCACCCTCAGCGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009826_3

>merge|NZ_CP009826|3|924940-925007|CRISPRCasFinder
CGACACCGCCGGCACCCTCAGCGCCACCGGCCTGCTCACCCTCACCACCGCTGGCGACCTCACCAACC

>NZ_CP009826|3|3|924940-925007|CRISPRCasFinder
CGACACCGCCGGCACCCTCAGCGCCA	CCGGCCTGCTCACCCT
CACCACCGCTGGCGACCTCACCAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009826.1\|WP_010894655.1\|912811_914263_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP009826.1\|WP_023907516.1\|920932_921334_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_075584628.1\|939524_939749_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009826.1\|WP_010894641.1\|936610_937003_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_031336451.1\|918175_918625_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009826.1\|WP_060870410.1\|932419_932836_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009826.1\|WP_031336473.1\|937413_938520_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283284
NZ_CP009826.1\|WP_031336449.1\|917526_918093_-\|elongation-factor-P-like-protein-YeiP	unknown	unknown	gnl\|CDD\|131233
NZ_CP009826.1\|WP_031336454.1\|920205_920598_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_023907514.1\|915840_917229_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP009826.1\|WP_042463324.1\|936268_936601_+\|hemagglutinin	unknown	unknown	gnl\|CDD\|283284
NZ_CP009826.1\|WP_010894656.1\|911303_912737_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP009826.1\|WP_031336474.1\|938531_938909_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_010894654.1\|914396_915638_-\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP009826.1\|WP_075584627.1\|939156_939381_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372824
NZ_CP009826.1\|WP_060870414.1\|931860_932238_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_031336455.1\|920655_920928_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009826.1\|WP_081089895.1\|932866_935710_+\|hemagglutinin-related-protein	unknown	unknown	gnl\|CDD\|379124
NZ_CP009826.1\|WP_031336471.1\|935714_936098_+\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009826.1\|WP_023907513.1\|910642_911299_-\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|236415

Protein	Function_ID	Function_description	E-value
NZ_CP009826.1\|WP_010894655.1\|912811_914263_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	9.62397e-130
NZ_CP009826.1\|WP_023907516.1\|920932_921334_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	9.57436e-47
NZ_CP009826.1\|WP_010894641.1\|936610_937003_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	7.96913e-52
NZ_CP009826.1\|WP_031336449.1\|917526_918093_-\|elongation-factor-P-like-protein-YeiP	gnl\|CDD\|131233	TIGR02178, Elongation_factor_P-like_protein, elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae. [Protein synthesis, Translation factors].	2.8397e-112
NZ_CP009826.1\|WP_031336471.1\|935714_936098_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	3.43906e-53
NZ_CP009826.1\|WP_031336473.1\|937413_938520_+\|hypothetical-protein	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	2.4133e-06
NZ_CP009826.1\|WP_081089895.1\|932866_935710_+\|hemagglutinin-related-protein	gnl\|CDD\|379124	pfam13332, Fil_haemagg_2, Haemagluttinin repeat.	9.42086e-43
NZ_CP009826.1\|WP_031336454.1\|920205_920598_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	1.68367e-44
NZ_CP009826.1\|WP_023907514.1\|915840_917229_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.11815e-127
NZ_CP009826.1\|WP_042463324.1\|936268_936601_+\|hemagglutinin	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	2.08295e-09
NZ_CP009826.1\|WP_010894656.1\|911303_912737_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.87742e-122
NZ_CP009826.1\|WP_031336474.1\|938531_938909_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	1.121e-47
NZ_CP009826.1\|WP_010894654.1\|914396_915638_-\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP009826.1\|WP_060870414.1\|931860_932238_+\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	1.16914e-47
NZ_CP009826.1\|WP_075584627.1\|939156_939381_+\|hypothetical-protein	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	3.9507e-19
NZ_CP009826.1\|WP_023907513.1\|910642_911299_-\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|236415	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase.	6.55432e-116

>NZ_CP009826.1|WP_023907516.1|920932_921334_+|DUF596-domain-containing-protein
MLTQEQIDFIYEDLIHAFDFLWFNIGHAYGMYAAQTDKDSFAERKNDFLFLLSKLLDEGKLKLAKKGKFLSGTTTELVEMFRKSFPDSDEAVDLGGAGIWFFTDECPAGAVWVFKEEGENEQGENNEDCYLWT
>NZ_CP009826.1|WP_031336455.1|920655_920928_+|hypothetical-protein
MSDTAKAFESQELSDQQIKDYAQELAGNISLKEIRPGIYVSKQEGKAILQLRSVFSSQELSEWRWVITFLNFPDLMAEVSNRKAIELIFR
>NZ_CP009826.1|WP_031336454.1|920205_920598_+|DUF596-domain-containing-protein
MLTEEQIDIIREGPLYFLEIIWFRIGQMYGLSPGQIDHDSFEERKNDLFFLLGKLLDEGQIKIGNHKGNFISGPTAALVEMFRNSFPDSDEEAQTAWFVTECPGGIVWVLKGQGEKGQDVYKWWLFTDEK
>NZ_CP009826.1|WP_031336451.1|918175_918625_-|hypothetical-protein
MSAIVLAVALAAGQVKEPPAAVGMSESQAEQSAMLLAHCAGVWDWMGNIEKVAGKPSRVEQFHRKADEAETAAMWVLASQHYVATGNTASGAHWKSLTRPKREAGLAHMNALAEPGQEKASLAAIKGCQGMLQEQEKILHMMQKTKVKQ
>NZ_CP009826.1|WP_031336449.1|917526_918093_-|elongation-factor-P-like-protein-YeiP
MKASEMKKGSIVEYNNGTYQIRDIQRSSPQGRGGNVRFRFVMYSVPGGSKLEASFDADEMLTAVELLRREASFSYKDGEAFVFLDEEDYTLYTLEAEAIGDNAGYISEGLSGCYVQLIDASPVALQLPQHVVLEVVDTPPELKGGTATKRPKPAKLITGIEVMVPEYITTGERILVNTTTGAFGGRAS
>NZ_CP009826.1|WP_023907514.1|915840_917229_+|FAD-binding-oxidoreductase
MNDSRLTSLHQTLPTLRLKTEPADLQHYGRDWTRRFTPAPLAIALPATVQEVQAIVRWANDAHIAIVPSGGRTGLSGGAMATNGELVLSLERMNKMLRFDPMDRTMTVQAGMPLEAVQAAARQHGLLYPVDFAARGSCSIGGTIATNAGGIRVVRYGNTREWIAGLNVVTGTGELLTLNHALIKNSSGYDFRHLMIGSEGTLGIVVEATLRLTDPPPPTKVMLLALPTFDVLMQVFAAFRAQLQIEAFEFFTQRALPHVLAHGAQAPFEHPYPYYVVTEFPCADATQETTALTVFETCMEQGWVLDGVISQSDAQAAQLWRLRESITESIAPYTPYKNDIAVRIAAMPAFLEQAQALLSQAYPEFEVLWFGHIGDGNLHINVLKPHTVPQADFIHTCEHVTALLADLLQRFRGSISAEHGIGLIKKPYLDSTRSPAEIALMRQLKRAFDPKWILNPGKVFDP
>NZ_CP009826.1|WP_010894654.1|914396_915638_-|phosphoglycerate-dehydrogenase
MPPTKTSFPKQDIRILLLEGVSHSGIETFRAAGYSQIKIHTTSLPEEALQAEIAEAHIIGIRSRTQLNAEVLGHAKRLMAIGCFCIGTNQVDLDTAELSGIPVFNAPYSNTRSVAELIIAEAILLLRGIPQKNAECHRGGWSKSAINSHEARGKVLGIVGYGHIGTQVSVLAEAMGMQVIFYDIESKLSLGNARPAASLDELLGIADVVTLHVPETAATKNMLGHAELARMKPGAHLINASRGTVVEIDALDAALVSGHLGGAAVDVFPSEPKGNSDPFISPLSRHDNVILTPHIGGSTLEAQDNIGIEVAAKLIRYSDNGSTLSAVNFPEVSLPEHVGSMRLLHIHRNVPGVLSHINELFSRHNVNIDGQFLRTDATLGYVVIDIGASQTQALALKEALTQVPGTLRTRLLY
>NZ_CP009826.1|WP_010894655.1|912811_914263_-|amino-acid-permease
MLKKHLFIVKPIEPTNHTGTGKGETQLKRSLTAGQLVMLGIGAVIGAGIFVLSGHAAAEYAGPAVVLSYILAGIACALAGLCYAEFAAMLPVSGSAYSYAYATLGEFTAWFIGWNLVLEYMFSASTVAVGWSGYLNSFLSSFGYGLPASLSSAPLDVVDGRLIYSGGLINLPAVAIVAAISGLCYVGITQSAFVNSITVAIKVSVIVLFIAFAARYVNPDNWVPFVPDNAAPGKYGMEGVIRGAAVVFFSYIGFDAVSTTAGEAKNPQRDMPIGILGSLAICTVIYIAFSGVLTGLMHYSQLDTPKPVATALETYPTLSWLKHVVEIGAIAGLSSTMLMMLMAQPRIFYAMSQDGLLPKLLSKVHPKFQTPHVGTLLVGACACTLAGLFPISLLGDLVSMGTLLAFATVCIGIVVLRRTRPDLPRPFRVPMYWVIAPAGAAACLYLFWQPFTEHWPLMVGWTVLGLVMYGLYGYHHSKLRRGG
>NZ_CP009826.1|WP_010894656.1|911303_912737_-|amino-acid-permease
MFKQLWATKLSQPSQDSAEGLSLQRVLGVWGLTALGIGAVIGGGIFVITGQAAANHAGPAIMLSFALAAICCTFCALAYAEFAAMVPVSGSAYTYTYATFGELAAWFIGWMLVLEYGVSAAAVAVSWSGYFLSLLQHLGIDLPAALVNAPLDGTLHATGAIANLPAATIVLLLTWLCYFGIRKSSKINIAMVALKSGLILLIIGVGWKYVNPDYWQPFIPPNQGPGKYGWDGVLHGASMVFFAYIGFEAVSVAAQESHRPQRDLPISMMSALAICTVLYIMMAAVMTGLVPYTQLGTDEPVVTAVAAHPQLGWLRVVVEIGALVGLSSVVLVMLIGQPRIFMIMAGDGLLPPIFSTIHSKHRTPHINTVITGLGIALLAAVFPLDVLGELTSMGTLIAFAAVCAGVLILRCTRPDLPRPFRMPAAWLFCSAGVLSCITLLSAMTRHNWMLMSVWTVLGFALYFGYGYRHSKLHREST
>NZ_CP009826.1|WP_023907513.1|910642_911299_-|methylthioribulose-1-phosphate-dehydratase
MNATSTPSLPYDANRLRELAHLLIDTISEFAQAGWTPATSSNFSHRLDEHHVAITVSGRDKRYLTEEDIMAVDLDGNAVGHPHTPSAETLLHTQLYRRFPEIDCVLHTHSPTQTVASRVYAGAGNISLKDYELLKAFEGHSTHETTLDVPVFCNTQNMNILAAQVDTLLDKQRMWGYLINGHGMYTWGNTLADARRHLEALEFLLHCELNLLKLRGYL
>NZ_CP009826.1|WP_060870414.1|931860_932238_+|DUF596-domain-containing-protein
MLTQQQIDHICEDLGGALDGVWYQIGYAHGITGIQVDPASFEERKNDFLFLIRKLLDEGRLKLAKNGEFIPGTTEELVEMFRSSFPASDEELETGTWFFFDECPAGAVWVFKGEGENGEDYYEWT
>NZ_CP009826.1|WP_060870410.1|932419_932836_+|hypothetical-protein
MNFIYPRSKVFIKLFIIAVFCSGHLYAQDATSDLEKDKEKAISQALDNLMDIYLKIQKDALSAVAVKRSCSKIYPQLKEKFEANIVSGKGGFEKRIREEMKKLEASKDPYVLGQIDGASMMLFNENVMKSECKSFSGM
>NZ_CP009826.1|WP_081089895.1|932866_935710_+|hemagglutinin-related-protein
MRPQWAGLTTALGAKNTIDAVRQDPRALGGLNASLTVGRSTHDSTTTTTTSTAAGSNVTAGGNVRISATGDGTASTLTIQGSDVRGDTMTSLKADGDIALLAAQNTVTNQRDNRGRSAGVGVAVNLGSGGTSAGLTAHASTSTGSGQSTDLTWSNSHVGGGNLLAIETGGDLLMKGAIGTAKHVIADIAGNLRIESLQDTHQYRSTDRSLGGSLTAGAGFSGSANLNHQTIRSDYASVTEQSGLFTGDGGYQLTVGGQTHLIGGAITSSLSAIHNGLNSLDTGTLTVQDIENHATYTATQVNLGGGYSRNGGTVGTDQQGHAATATHVPGTTLPSHNGLSASPPSAMTARDSSHSTTYSGISQGALTIRDPAAQHALTGHTVAETIAGLNRDILTDTATSNALTPIFDEQRINAGFDIVSGLQRETGIFLNNRAAEADLKTRQATAAEQAAHDPTNGFNDQQRQALREQAIALTNEAHALKDAWGPGGTYRQITTALAAGASGNVSAASSDLAKNMIVNYVQQQGATAIGHWVATGQLTEGSPLHAALHALLACAGAAASQQHCSSGAQGAAASSVLTGLFSDPRPEDTAQDREAKRNLITSIVTGIASIGNTDPATATHAAIAAVDNNWLAAKQYVQMLNEEFEAATEKEKGRLEEEKVRAKWREIDARQNKLTADGLLKGLKESGINDINGLEHVILHPVDTFHELEKILTHPTLLLQLGERAVQELLNKVSRMSEALLVGGDQHAQQFGEDLGSVIADVGVALAAAGTFKAAEILGEAGINLSKDVLEGMATSKANQLPHIEVVDTAKLPLLVQYEKYVDNAVSLIDKRHPNNQFIISGKQLEPLPYDPKVPGGSNKAGNVKVFPSEMLTDKEIRQHAEVWARGAPFKEVKPGVYVADVSDGTKVTLRSVSSSDQVTKARWTLDIRDNPKLREVTKETVEFKFR
>NZ_CP009826.1|WP_031336471.1|935714_936098_+|DUF596-domain-containing-protein
MLTQEQIDFFCGRSGEPLHFIWGYIEDAYRIPPQRPDPNSFEERKNDFFFIIGKLLDEGLLKLGNRKGEFFTDTTAELVDKFRSCFPASDEELIEGIWLVIEECPFVAVWVHKGEGKDGEDYHEWAF
>NZ_CP009826.1|WP_042463324.1|936268_936601_+|hemagglutinin
MISRKQLEPLPYDPNVPGGSNKAGNVRVFKSEALTDKQIMNYAQQLAGDVPLKETRTPGVYMAELSDGTKVTLRSVSSSDQVTKARWTIDIDKNPSLREVTNKKVELKFR
>NZ_CP009826.1|WP_010894641.1|936610_937003_+|DUF596-domain-containing-protein
MLTQEQLDDIYESLGCPLHFLWSYIGDAHGLSHDQVDPDSFEERKNDFFFLVGKLLDDGLLKLGNRKTELIMEGTAVELVEMFRKSLPASDEEIDQEVGGLWFFTDCPFVAAWVYKGTGENGEDEYDWCF
>NZ_CP009826.1|WP_031336473.1|937413_938520_+|hypothetical-protein
MTALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLACAGAAGGAAAVVINSLLDRANGAEGASLSPAEKQYRTDLVTSLVAGITTAAGGDAAVSSAAARLETENNAAFIPVILGAIWLADKGITVYQAWQDIKAIRSGKKTIEQVALERGQDYVTSILVGNLAKYGLKAAMIGGRWIAGTAKEIANAEKEALKQIRNNPKGPDLTQKPPGQIIVMQQQKRLDDVKSVIGRGSQKDTLVVGGIEVKAVPYDRNVPGGSNKSGTTKVFDSQALTDAQIKDYAQQLTGGVPLKQTRTPGVYIAELSDGTKVTLRSESSSKASTQARWTIDIRDNPSLRGVTKERVELKFR
>NZ_CP009826.1|WP_031336474.1|938531_938909_+|DUF596-domain-containing-protein
MLTQEQIDFIYEDLEHPLHFLWSDIERVHGIIGTKKDPDSFEERKKDFLFIIGKLLDEGRLKLAKKGKFMTGTTEEQVEMFRKSFPASDEEMELGAWFFADDCPAGAVWVLKGEGENGEDYYEWT
>NZ_CP009826.1|WP_075584627.1|939156_939381_+|hypothetical-protein
MTDAAGRVKSIEANLFLKEMDRNTYQQRCVGKCGEVGDEGGHLIASSLGRAGDRINLVSQASALNRIGWRKMEK
>NZ_CP009826.1|WP_075584628.1|939524_939749_-|hypothetical-protein
MKASYTLPEKTSHFQKMSLPALITLYSKHRFLKFDSLEQQNTHRDLLKVNAFLMGNIPTNVFRAAPVHQNKSPK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP009826_1	1.1\|924354\|22\|NZ_CP009826\|CRISPRCasFinder	924354-924375	22	NZ_CP009826.1	2219955-2219976	1.0
NZ_CP009826_1	1.1\|924354\|22\|NZ_CP009826\|CRISPRCasFinder	924354-924375	22	NZ_CP009826.1	2655973-2655994	1.0
NZ_CP009826_1	1.2\|924402\|49\|NZ_CP009826\|CRISPRCasFinder	924402-924450	49	NZ_CP009826.1	2219880-2219928	1.0
NZ_CP009826_1	1.2\|924402\|49\|NZ_CP009826\|CRISPRCasFinder	924402-924450	49	NZ_CP009826.1	2655898-2655946	1.0
NZ_CP009826_1	1.3\|924477\|37\|NZ_CP009826\|CRISPRCasFinder	924477-924513	37	NZ_CP009826.1	2219817-2219853	1.0
NZ_CP009826_1	1.3\|924477\|37\|NZ_CP009826\|CRISPRCasFinder	924477-924513	37	NZ_CP009826.1	2655835-2655871	1.0
NZ_CP009826_2	2.1\|924726\|37\|NZ_CP009826\|CRISPRCasFinder	924726-924762	37	NZ_CP009826.1	2219568-2219604	1.0
NZ_CP009826_2	2.1\|924726\|37\|NZ_CP009826\|CRISPRCasFinder	924726-924762	37	NZ_CP009826.1	2655586-2655622	1.0
NZ_CP009826_2	2.2\|924789\|34\|NZ_CP009826\|CRISPRCasFinder	924789-924822	34	NZ_CP009826.1	2219508-2219541	1.0
NZ_CP009826_2	2.2\|924789\|34\|NZ_CP009826\|CRISPRCasFinder	924789-924822	34	NZ_CP009826.1	2655526-2655559	1.0
NZ_CP009826_3	3.1\|924966\|16\|NZ_CP009826\|CRISPRCasFinder	924966-924981	16	NZ_CP009826.1	2219349-2219364	1.0
NZ_CP009826_3	3.1\|924966\|16\|NZ_CP009826\|CRISPRCasFinder	924966-924981	16	NZ_CP009826.1	2655367-2655382	1.0

1. spacer 1.1|924354|22|NZ_CP009826|CRISPRCasFinder matches to position: 2219955-2219976, mismatch: 0, identity: 1.0

agaccgccacccacctgcacac	CRISPR spacer
agaccgccacccacctgcacac	Protospacer
**********************

2. spacer 1.1|924354|22|NZ_CP009826|CRISPRCasFinder matches to position: 2655973-2655994, mismatch: 0, identity: 1.0

agaccgccacccacctgcacac	CRISPR spacer
agaccgccacccacctgcacac	Protospacer
**********************

3. spacer 1.2|924402|49|NZ_CP009826|CRISPRCasFinder matches to position: 2219880-2219928, mismatch: 0, identity: 1.0

gacacatcagcagcagcggcaccctccagattgacggcaccaccctcac	CRISPR spacer
gacacatcagcagcagcggcaccctccagattgacggcaccaccctcac	Protospacer
*************************************************

4. spacer 1.2|924402|49|NZ_CP009826|CRISPRCasFinder matches to position: 2655898-2655946, mismatch: 0, identity: 1.0

gacacatcagcagcagcggcaccctccagattgacggcaccaccctcac	CRISPR spacer
gacacatcagcagcagcggcaccctccagattgacggcaccaccctcac	Protospacer
*************************************************

5. spacer 1.3|924477|37|NZ_CP009826|CRISPRCasFinder matches to position: 2219817-2219853, mismatch: 0, identity: 1.0

gcggcgacacccgcctccacctccaagacaccctgaa	CRISPR spacer
gcggcgacacccgcctccacctccaagacaccctgaa	Protospacer
*************************************

6. spacer 1.3|924477|37|NZ_CP009826|CRISPRCasFinder matches to position: 2655835-2655871, mismatch: 0, identity: 1.0

gcggcgacacccgcctccacctccaagacaccctgaa	CRISPR spacer
gcggcgacacccgcctccacctccaagacaccctgaa	Protospacer
*************************************

7. spacer 2.1|924726|37|NZ_CP009826|CRISPRCasFinder matches to position: 2219568-2219604, mismatch: 0, identity: 1.0

ctcaaaacctcacccttaccctgagcgacactctcac	CRISPR spacer
ctcaaaacctcacccttaccctgagcgacactctcac	Protospacer
*************************************

8. spacer 2.1|924726|37|NZ_CP009826|CRISPRCasFinder matches to position: 2655586-2655622, mismatch: 0, identity: 1.0

ctcaaaacctcacccttaccctgagcgacactctcac	CRISPR spacer
ctcaaaacctcacccttaccctgagcgacactctcac	Protospacer
*************************************

9. spacer 2.2|924789|34|NZ_CP009826|CRISPRCasFinder matches to position: 2219508-2219541, mismatch: 0, identity: 1.0

gcggcaccttggacctcactgcagaccagctgag	CRISPR spacer
gcggcaccttggacctcactgcagaccagctgag	Protospacer
**********************************

10. spacer 2.2|924789|34|NZ_CP009826|CRISPRCasFinder matches to position: 2655526-2655559, mismatch: 0, identity: 1.0

gcggcaccttggacctcactgcagaccagctgag	CRISPR spacer
gcggcaccttggacctcactgcagaccagctgag	Protospacer
**********************************

11. spacer 3.1|924966|16|NZ_CP009826|CRISPRCasFinder matches to position: 2219349-2219364, mismatch: 0, identity: 1.0

ccggcctgctcaccct	CRISPR spacer
ccggcctgctcaccct	Protospacer
****************

12. spacer 3.1|924966|16|NZ_CP009826|CRISPRCasFinder matches to position: 2655367-2655382, mismatch: 0, identity: 1.0

ccggcctgctcaccct	CRISPR spacer
ccggcctgctcaccct	Protospacer
****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009826_1	1.1\|924354\|22\|NZ_CP009826\|CRISPRCasFinder	924354-924375	22	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1770321-1770342	2	0.909
NZ_CP009826_1	1.1\|924354\|22\|NZ_CP009826\|CRISPRCasFinder	924354-924375	22	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	42950-42971	2	0.909
NZ_CP009826_1	1.1\|924354\|22\|NZ_CP009826\|CRISPRCasFinder	924354-924375	22	KY385423	Klebsiella phage vB_KpnP_KpV74, complete genome	23167-23188	3	0.864

1. spacer 1.1|924354|22|NZ_CP009826|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 2, identity: 0.909

agaccgccacccacctgcacac	CRISPR spacer
ggaccgtcacccacctgcacac	Protospacer
.*****.***************

2. spacer 1.1|924354|22|NZ_CP009826|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 2, identity: 0.909

agaccgccacccacctgcacac	CRISPR spacer
ggaccgtcacccacctgcacac	Protospacer
.*****.***************

3. spacer 1.1|924354|22|NZ_CP009826|CRISPRCasFinder matches to KY385423 (Klebsiella phage vB_KpnP_KpV74, complete genome) position: , mismatch: 3, identity: 0.864

agaccgccacccacctgcacac	CRISPR spacer
ccaccgccacccacctgcacag	Protospacer
  *******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

407486 : 420312

Burkholderia_phage(11.11%)

terminase,protease,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031336253.1\|407486_407939_-	hypothetical protein	C7BGF7	Burkholderia_phage	6.0e-11	47.1
WP_010893028.1\|408053_408485_-	transcriptional regulator	A0A2D1GNH0	Pseudomonas_phage	3.8e-15	57.4
WP_023907299.1\|408561_408858_+	transcriptional regulator	D0UIL8	Aggregatibacter_phage	1.9e-13	57.1
WP_023907300.1\|408844_409195_+	hypothetical protein	NA	NA	NA	NA
WP_023907301.1\|409252_409870_+	hypothetical protein	NA	NA	NA	NA
WP_023907302.1\|409904_410306_-	hypothetical protein	NA	NA	NA	NA
WP_023907303.1\|410304_411360_+	Zn-finger, CHC2 type	A0A1S5RF89	Helicobacter_phage	6.7e-13	41.8
WP_023907304.1\|411356_412823_+	virulence factor	A0A2D1GN57	Marinobacter_phage	3.3e-58	31.9
WP_023907305.1\|413219_413828_+	hypothetical protein	A0A2I7S8M0	Vibrio_phage	6.6e-05	40.7
WP_088572679.1\|413824_415924_+\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	9.7e-72	30.2
WP_157288617.1\|416000_416447_+	hypothetical protein	NA	NA	NA	NA
WP_023907307.1\|416443_418006_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	2.4e-91	39.2
WP_023907308.1\|418002_420312_+\|protease	Clp protease ClpP	B7SYD7	Stenotrophomonas_phage	6.1e-83	42.8

DBSCAN-SWA_2

994316 : 1007807

Pseudomonas_phage(22.22%)

terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023907540.1\|994316_995372_+	Zn-finger, CHC2 type	A0A1S5RF89	Helicobacter_phage	3.9e-13	43.0
WP_023907541.1\|995368_996832_+	virulence factor	A0A2D1GN57	Marinobacter_phage	1.6e-57	32.3
WP_031336493.1\|997225_997834_+	hypothetical protein	A0A2I7S8M0	Vibrio_phage	6.6e-05	40.7
WP_088572686.1\|997830_999924_+\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	6.7e-73	30.0
WP_042462770.1\|1000000_1000213_+	hypothetical protein	NA	NA	NA	NA
WP_010893037.1\|1000209_1000446_+	hypothetical protein	NA	NA	NA	NA
WP_023907544.1\|1000442_1000922_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.5e-12	32.1
WP_023907545.1\|1001074_1001365_+	hypothetical protein	NA	NA	NA	NA
WP_031336503.1\|1001491_1001920_+	hypothetical protein	NA	NA	NA	NA
WP_010894569.1\|1001916_1002153_+	hypothetical protein	A0A0A1IV01	Pseudomonas_phage	1.6e-12	50.7
WP_023907547.1\|1002142_1004968_+	VWA domain-containing protein	J9RWA5	Pseudomonas_phage	1.7e-71	36.5
WP_023907548.1\|1004960_1005473_+	hypothetical protein	G8CLC0	Synechococcus_phage	2.2e-09	31.4
WP_010894565.1\|1005808_1006201_-	hypothetical protein	NA	NA	NA	NA
WP_023906405.1\|1006251_1006551_-	hypothetical protein	NA	NA	NA	NA
WP_023906406.1\|1006645_1006897_-	glycine zipper family protein	NA	NA	NA	NA
WP_075584631.1\|1006909_1007152_-	hypothetical protein	NA	NA	NA	NA
WP_031336505.1\|1007474_1007807_+	DNA-binding transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	5.4e-17	39.8

DBSCAN-SWA_3

1193074 : 1201179

Stenotrophomonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088572689.1\|1193074_1194250_+	Replication initiation factor	S0F3F7	Stenotrophomonas_phage	1.3e-76	45.8
WP_075584639.1\|1194290_1194605_+	hypothetical protein	NA	NA	NA	NA
WP_031336583.1\|1194616_1194820_+	hypothetical protein	S0F2M5	Stenotrophomonas_phage	2.8e-16	60.0
WP_038227439.1\|1194816_1195062_+	hypothetical protein	NA	NA	NA	NA
WP_023907621.1\|1196653_1197025_+	DUF2523 domain-containing protein	A0A1D6ZIU0	Xanthomonas_phage	3.1e-21	46.8
WP_023907622.1\|1197029_1198181_+	hypothetical protein	S0F3F8	Stenotrophomonas_phage	1.4e-112	55.9
WP_031336586.1\|1198414_1198696_-	hypothetical protein	NA	NA	NA	NA
WP_023907624.1\|1198758_1199106_-	hypothetical protein	Q38057	Xanthomonas_phage	3.1e-07	53.1
WP_075584643.1\|1199330_1199618_+	hypothetical protein	NA	NA	NA	NA
WP_010894337.1\|1199680_1199929_+	hypothetical protein	NA	NA	NA	NA
WP_023907625.1\|1200105_1201179_-	zonular occludens toxin	Q6UAZ2	Ralstonia_phage	2.5e-23	28.7

DBSCAN-SWA_4

1391995 : 1419915

Haemophilus_phage(25.0%)

integrase,terminase,head

attL 1400921:1400934|attR 1420831:1420844

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023906641.1\|1391995_1392871_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.3e-09	25.2
WP_023907674.1\|1392867_1393848_+	hypothetical protein	NA	NA	NA	NA
WP_031336674.1\|1394089_1394536_+	hypothetical protein	NA	NA	NA	NA
WP_010894094.1\|1395136_1395433_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.4e-23	53.7
WP_004085592.1\|1395435_1395729_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	6.2e-09	37.9
WP_023907675.1\|1395784_1396138_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	1.8e-23	47.8
WP_023907676.1\|1396134_1396776_-	hypothetical protein	D0UIH7	Aggregatibacter_phage	5.7e-31	40.9
WP_088572692.1\|1396772_1397603_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	1.8e-77	52.6
WP_060870277.1\|1397599_1397917_-	hypothetical protein	NA	NA	NA	NA
WP_023907680.1\|1397916_1398687_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	2.0e-27	33.0
WP_031336679.1\|1398797_1399025_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_023907681.1\|1399008_1399275_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5SB46	Streptococcus_phage	1.3e-13	42.7
WP_023907682.1\|1399286_1401176_-	hypothetical protein	A0A2I7RBK9	Vibrio_phage	2.0e-31	35.2
1400921:1400934	attL	NA	NA	NA	NA
WP_023907683.1\|1401746_1402184_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	1.8e-44	62.4
WP_088572693.1\|1402193_1403690_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	7.3e-122	47.8
WP_038227621.1\|1403690_1404161_-	hypothetical protein	NA	NA	NA	NA
WP_038227618.1\|1404147_1404516_-	hypothetical protein	Q776V7	Haemophilus_phage	1.0e-16	37.7
WP_023907975.1\|1404502_1404982_-	hypothetical protein	M4SN98	Psychrobacter_phage	1.5e-07	26.7
WP_023907976.1\|1404978_1405347_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	1.5e-12	37.4
WP_023907977.1\|1405349_1405649_-	hypothetical protein	NA	NA	NA	NA
WP_023907978.1\|1405714_1406698_-	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	9.9e-51	39.3
WP_023907979.1\|1406707_1407190_-	hypothetical protein	NA	NA	NA	NA
WP_031336977.1\|1407217_1408408_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	2.5e-40	42.0
WP_023907981.1\|1408407_1409253_-\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	1.0e-27	32.7
WP_075584677.1\|1409164_1410511_-	DUF1073 domain-containing protein	H9C106	Vibrio_phage	2.3e-66	39.5
WP_088572694.1\|1410591_1412142_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	2.1e-111	44.9
WP_023907697.1\|1412092_1412491_-	hypothetical protein	NA	NA	NA	NA
WP_023907698.1\|1412795_1413257_-	hypothetical protein	A0A0S0N8C8	Pseudomonas_phage	3.0e-10	32.1
WP_010894063.1\|1413246_1413576_-	hypothetical protein	NA	NA	NA	NA
WP_031336691.1\|1413568_1414069_-	lysozyme	A0A2I7RLY1	Vibrio_phage	5.6e-26	49.7
WP_004085696.1\|1414271_1414610_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.0e-07	54.9
WP_010894061.1\|1414596_1414863_-	hypothetical protein	K4NX81	Burkholderia_phage	8.1e-08	40.7
WP_031336694.1\|1415050_1415749_-	hypothetical protein	C8CLH7	Xylella_phage	1.5e-101	82.2
WP_088572716.1\|1415745_1416135_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	3.0e-11	43.0
WP_088572695.1\|1416182_1416872_-	hypothetical protein	NA	NA	NA	NA
WP_031336697.1\|1416852_1417704_-	YdaU family protein	A0A142K7R2	Mycobacterium_phage	2.1e-17	60.3
WP_031336699.1\|1417700_1418009_-	DUF1376 domain-containing protein	A0A0R6PIU3	Moraxella_phage	1.4e-14	45.6
WP_031336702.1\|1418382_1418622_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_023907703.1\|1418895_1419915_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.0e-183	93.8
1420831:1420844	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1498472 : 1633535

155

Xylella_phage(29.89%)

integrase,tail,terminase,plate,capsid,portal,tRNA,protease

attL 1499535:1499594|attR 1542087:1583471

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023907725.1\|1498472_1499534_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	5.8e-97	53.5
1499535:1499594	attL	NA	NA	NA	NA
WP_023906705.1\|1499545_1499842_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	5.8e-07	48.1
WP_023906706.1\|1499838_1501257_-	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	2.9e-261	93.0
WP_023907477.1\|1501320_1501626_+	hypothetical protein	NA	NA	NA	NA
WP_023906708.1\|1501627_1501906_-	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	2.5e-44	96.7
WP_088572697.1\|1501902_1504083_-	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	91.9
WP_023907727.1\|1504084_1505683_-	antirepressor	C8CLG1	Xylella_phage	9.7e-181	64.5
WP_023907728.1\|1505673_1506240_-	DUF2815 family protein	C8CLG2	Xylella_phage	4.1e-102	96.8
WP_023907730.1\|1507513_1507960_-	hypothetical protein	C8CLG4	Xylella_phage	1.0e-31	74.3
WP_023907731.1\|1508012_1508207_-	hypothetical protein	C8CLG5	Xylella_phage	4.6e-21	84.4
WP_023907732.1\|1508238_1508430_-	hypothetical protein	C8CLG6	Xylella_phage	2.0e-16	71.9
WP_023907733.1\|1508453_1508645_-	hypothetical protein	NA	NA	NA	NA
WP_023907734.1\|1508641_1509043_-	hypothetical protein	C8CLG7	Xylella_phage	8.7e-46	69.2
WP_023907735.1\|1509042_1509510_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_023907736.1\|1509506_1510064_-	hypothetical protein	C8CLG9	Xylella_phage	6.2e-10	37.5
WP_038227519.1\|1510352_1510613_+	hypothetical protein	NA	NA	NA	NA
WP_031336741.1\|1510784_1511381_-	hypothetical protein	NA	NA	NA	NA
WP_023907739.1\|1511395_1512166_-	helix-turn-helix transcriptional regulator	C8CLH0	Xylella_phage	4.6e-27	35.1
WP_023907740.1\|1512239_1512440_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_023907741.1\|1512436_1512742_-	hypothetical protein	NA	NA	NA	NA
WP_023907743.1\|1513027_1513519_-	hypothetical protein	A0A127KNL4	Pseudomonas_phage	1.5e-15	28.6
WP_023907744.1\|1513560_1513866_-	hypothetical protein	NA	NA	NA	NA
WP_023907746.1\|1514245_1514434_+	hypothetical protein	NA	NA	NA	NA
WP_023907747.1\|1514430_1514679_+	hypothetical protein	NA	NA	NA	NA
WP_023907748.1\|1514739_1515003_+	hypothetical protein	NA	NA	NA	NA
WP_023907749.1\|1515292_1515892_+	phage antirepressor	C8CLH5	Xylella_phage	6.5e-29	44.1
WP_023907750.1\|1516026_1518558_+	primase	C8CLH6	Xylella_phage	0.0e+00	72.7
WP_031336745.1\|1519049_1519667_+	hypothetical protein	V5YTF6	Pseudomonas_phage	8.1e-27	50.0
WP_023907752.1\|1519633_1520122_+	lysozyme	A0A2I7RLY1	Vibrio_phage	2.6e-28	52.4
WP_010893232.1\|1520141_1520453_+	hypothetical protein	A0A172PZR6	Pseudomonas_phage	2.0e-18	43.0
WP_031336749.1\|1520442_1520904_+	hypothetical protein	NA	NA	NA	NA
WP_023907754.1\|1520905_1521130_+	hypothetical protein	NA	NA	NA	NA
WP_051372732.1\|1521302_1521854_+	DNA-packaging protein	A0A193GYK5	Enterobacter_phage	3.7e-47	61.3
WP_023907756.1\|1521846_1523799_+\|terminase	phage terminase large subunit family protein	D5LH04	Escherichia_phage	1.5e-252	67.8
WP_023907757.1\|1523802_1524351_+	hypothetical protein	V5YTG8	Pseudomonas_phage	1.1e-38	50.0
WP_023907758.1\|1524347_1525946_+\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	9.2e-131	51.1
WP_023907020.1\|1525929_1527810_+\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	1.9e-167	48.6
WP_010893239.1\|1527827_1528088_+	hypothetical protein	NA	NA	NA	NA
WP_031336752.1\|1528087_1528411_+	hypothetical protein	NA	NA	NA	NA
WP_023907759.1\|1528407_1528929_+	hypothetical protein	D5LGZ7	Escherichia_phage	1.9e-13	35.4
WP_023907873.1\|1528904_1529447_+	hypothetical protein	D5LGZ6	Escherichia_phage	4.5e-37	42.9
WP_031336754.1\|1529443_1530031_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_023907761.1\|1530035_1530335_-	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	4.1e-16	49.4
WP_023907014.1\|1530346_1530628_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_023907013.1\|1530629_1530944_-	hypothetical protein	O64357	Escherichia_phage	6.2e-07	30.4
WP_031336756.1\|1531077_1531416_+\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	1.9e-30	58.6
WP_023907762.1\|1531415_1532309_+\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	8.1e-68	45.4
WP_031336758.1\|1532301_1532859_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	5.1e-52	54.4
WP_023907764.1\|1532866_1534459_+	hypothetical protein	V9IQX0	Stenotrophomonas_phage	6.7e-81	36.2
WP_023907007.1\|1534523_1535702_+\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	4.4e-138	56.3
WP_023907765.1\|1535701_1536211_+\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	2.6e-47	52.7
WP_023907766.1\|1536213_1536501_+\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.8e-13	44.6
WP_023907767.1\|1536627_1538847_+\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	3.1e-116	49.1
WP_023907768.1\|1538843_1539326_+\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	9.8e-28	46.0
WP_023906711.1\|1539322_1539541_+\|tail	tail protein	NA	NA	NA	NA
WP_023907769.1\|1539531_1540614_+	phage late control D family protein	A0A088FRU7	Escherichia_phage	2.0e-92	48.1
WP_023907725.1\|1541024_1542086_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	5.8e-97	53.5
WP_023906705.1\|1542097_1542394_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	5.8e-07	48.1
WP_023906706.1\|1542390_1543809_-	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	2.9e-261	93.0
WP_023907477.1\|1543872_1544178_+	hypothetical protein	NA	NA	NA	NA
WP_023906708.1\|1544179_1544458_-	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	2.5e-44	96.7
WP_088572697.1\|1544454_1546635_-	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	91.9
WP_023907727.1\|1546636_1548235_-	antirepressor	C8CLG1	Xylella_phage	9.7e-181	64.5
WP_023907728.1\|1548225_1548792_-	DUF2815 family protein	C8CLG2	Xylella_phage	4.1e-102	96.8
WP_023907730.1\|1550065_1550512_-	hypothetical protein	C8CLG4	Xylella_phage	1.0e-31	74.3
WP_023907731.1\|1550564_1550759_-	hypothetical protein	C8CLG5	Xylella_phage	4.6e-21	84.4
WP_023907732.1\|1550790_1550982_-	hypothetical protein	C8CLG6	Xylella_phage	2.0e-16	71.9
WP_023907733.1\|1551005_1551197_-	hypothetical protein	NA	NA	NA	NA
WP_023907734.1\|1551193_1551595_-	hypothetical protein	C8CLG7	Xylella_phage	8.7e-46	69.2
WP_023907735.1\|1551594_1552062_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_023907736.1\|1552058_1552616_-	hypothetical protein	C8CLG9	Xylella_phage	6.2e-10	37.5
WP_038227519.1\|1552904_1553165_+	hypothetical protein	NA	NA	NA	NA
WP_031336741.1\|1553336_1553933_-	hypothetical protein	NA	NA	NA	NA
WP_023907739.1\|1553947_1554718_-	helix-turn-helix transcriptional regulator	C8CLH0	Xylella_phage	4.6e-27	35.1
WP_023907740.1\|1554791_1554992_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_023907741.1\|1554988_1555294_-	hypothetical protein	NA	NA	NA	NA
WP_023907743.1\|1555579_1556071_-	hypothetical protein	A0A127KNL4	Pseudomonas_phage	1.5e-15	28.6
WP_023907744.1\|1556112_1556418_-	hypothetical protein	NA	NA	NA	NA
WP_023907746.1\|1556797_1556986_+	hypothetical protein	NA	NA	NA	NA
WP_023907747.1\|1556982_1557231_+	hypothetical protein	NA	NA	NA	NA
WP_023907748.1\|1557291_1557555_+	hypothetical protein	NA	NA	NA	NA
WP_023907749.1\|1557844_1558444_+	phage antirepressor	C8CLH5	Xylella_phage	6.5e-29	44.1
WP_023907750.1\|1558578_1561110_+	primase	C8CLH6	Xylella_phage	0.0e+00	72.7
WP_031336745.1\|1561601_1562219_+	hypothetical protein	V5YTF6	Pseudomonas_phage	8.1e-27	50.0
WP_023907752.1\|1562185_1562674_+	lysozyme	A0A2I7RLY1	Vibrio_phage	2.6e-28	52.4
WP_010893232.1\|1562693_1563005_+	hypothetical protein	A0A172PZR6	Pseudomonas_phage	2.0e-18	43.0
WP_031336749.1\|1562994_1563456_+	hypothetical protein	NA	NA	NA	NA
WP_023907754.1\|1563457_1563682_+	hypothetical protein	NA	NA	NA	NA
WP_051372732.1\|1563854_1564406_+	DNA-packaging protein	A0A193GYK5	Enterobacter_phage	3.7e-47	61.3
WP_023907756.1\|1564398_1566351_+\|terminase	phage terminase large subunit family protein	D5LH04	Escherichia_phage	1.5e-252	67.8
WP_023907757.1\|1566354_1566903_+	hypothetical protein	V5YTG8	Pseudomonas_phage	1.1e-38	50.0
WP_023907758.1\|1566899_1568498_+\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	9.2e-131	51.1
WP_023907020.1\|1568481_1570362_+\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	1.9e-167	48.6
WP_010893239.1\|1570379_1570640_+	hypothetical protein	NA	NA	NA	NA
WP_031336752.1\|1570639_1570963_+	hypothetical protein	NA	NA	NA	NA
WP_023907759.1\|1570959_1571481_+	hypothetical protein	D5LGZ7	Escherichia_phage	1.9e-13	35.4
WP_023907873.1\|1571456_1571999_+	hypothetical protein	D5LGZ6	Escherichia_phage	4.5e-37	42.9
WP_031336754.1\|1571995_1572583_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_023907761.1\|1572587_1572887_-	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	4.1e-16	49.4
WP_023907014.1\|1572898_1573180_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_023907013.1\|1573181_1573496_-	hypothetical protein	O64357	Escherichia_phage	6.2e-07	30.4
WP_031336756.1\|1573629_1573968_+\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	1.9e-30	58.6
WP_023907762.1\|1573967_1574861_+\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	8.1e-68	45.4
WP_031336758.1\|1574853_1575411_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	5.1e-52	54.4
WP_023907764.1\|1575418_1577011_+	hypothetical protein	V9IQX0	Stenotrophomonas_phage	6.7e-81	36.2
WP_023907007.1\|1577075_1578254_+\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	4.4e-138	56.3
WP_023907765.1\|1578253_1578763_+\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	2.6e-47	52.7
WP_023907766.1\|1578765_1579053_+\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.8e-13	44.6
WP_023907767.1\|1579179_1581399_+\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	3.1e-116	49.1
WP_023907768.1\|1581395_1581878_+\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	9.8e-28	46.0
WP_023906711.1\|1581874_1582093_+\|tail	tail protein	NA	NA	NA	NA
WP_023907769.1\|1582083_1583166_+	phage late control D family protein	A0A088FRU7	Escherichia_phage	2.0e-92	48.1
WP_031336760.1\|1583749_1585105_+	DUF2252 domain-containing protein	NA	NA	NA	NA
1542087:1583471	attR	NA	NA	NA	NA
WP_010893986.1\|1585323_1586703_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	8.4e-40	29.7
WP_023907771.1\|1586771_1587323_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_023907772.1\|1587912_1588797_-	tyrosine recombinase XerC	A0A0K0N6I5	Gordonia_phage	3.5e-15	32.5
WP_031336763.1\|1588820_1589492_-	DUF484 family protein	NA	NA	NA	NA
WP_023907774.1\|1589488_1590343_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_075584652.1\|1590352_1590661_-	lipoprotein	NA	NA	NA	NA
WP_031336764.1\|1590667_1592821_-	oligopeptidase B	F2Y2Z7	Organic_Lake_phycodnavirus	3.1e-25	36.6
WP_004083722.1\|1593576_1594044_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
WP_031336766.1\|1594207_1594669_+	SUF system Fe-S cluster assembly regulator	NA	NA	NA	NA
WP_031336768.1\|1594689_1596147_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_023906716.1\|1596297_1597134_+	Fe-S cluster assembly ATPase SufC	A0A2R8FG22	Brazilian_cedratvirus	2.2e-11	27.6
WP_010893975.1\|1597133_1598402_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_010893974.1\|1598389_1599640_+	cysteine desulfurase	Q2XUY6	environmental_halophage	1.1e-86	39.4
WP_010893973.1\|1599743_1600073_+	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_023907777.1\|1600574_1601720_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_010893970.1\|1601716_1602571_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_010893969.1\|1602654_1604001_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_010893968.1\|1603997_1604894_-	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_031336771.1\|1605625_1606783_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_023906719.1\|1606782_1607823_-	SIS domain-containing protein	NA	NA	NA	NA
WP_023907779.1\|1607819_1608890_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_023907780.1\|1608893_1610183_-	glucose/galactose MFS transporter	NA	NA	NA	NA
WP_031336773.1\|1610276_1610462_-	hypothetical protein	NA	NA	NA	NA
WP_031336775.1\|1610880_1611885_+	glucokinase-like protein	NA	NA	NA	NA
WP_010893960.1\|1611904_1612321_-	antibiotic resistance protein VanZ	NA	NA	NA	NA
WP_023907781.1\|1612308_1613493_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_010893958.1\|1613579_1614317_+	pteridine reductase	NA	NA	NA	NA
WP_080507206.1\|1614327_1614894_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_023907782.1\|1614972_1616469_-	response regulator	A0A2K9L0Z8	Tupanvirus	1.4e-08	35.8
WP_031336780.1\|1617121_1617553_-	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_023906726.1\|1617693_1619061_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.3e-69	36.7
WP_023906727.1\|1619193_1619838_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_010893952.1\|1620381_1622292_-	DUF3857 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_088572698.1\|1622476_1624831_-	DNA translocase FtsK	G1D482	Mycobacterium_virus	3.1e-82	45.1
WP_010893949.1\|1625097_1626063_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.4e-64	43.0
WP_023906728.1\|1626493_1627627_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010893947.1\|1627638_1628370_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_010893946.1\|1628486_1628705_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_010893944.1\|1629037_1631314_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.4e-169	44.7
WP_010893943.1\|1631446_1631767_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.2e-11	42.0
WP_010893942.1\|1631940_1632399_+	NUDIX hydrolase	NA	NA	NA	NA
WP_010893941.1\|1632395_1633535_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_6

2099262 : 2146334

Xylella_phage(15.38%)

terminase,plate,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023907957.1\|2099262_2100900_+	response regulator	A0A2K9L5I4	Tupanvirus	2.3e-12	24.2
WP_010893491.1\|2100936_2101569_-	response regulator transcription factor	NA	NA	NA	NA
WP_031336968.1\|2102389_2102713_+	hypothetical protein	NA	NA	NA	NA
WP_023907958.1\|2103719_2104052_-	DNA-binding transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	1.4e-17	40.7
WP_023907959.1\|2104456_2105005_+	SocA family protein	I6R0L8	Salmonella_phage	9.5e-19	39.4
WP_143704186.1\|2104937_2105561_+	hypothetical protein	NA	NA	NA	NA
WP_023907961.1\|2105574_2105802_+	hypothetical protein	C8CLJ6	Xylella_phage	6.4e-14	62.9
WP_023907962.1\|2105802_2106966_-\|tail	tail fiber protein	A0A0U4JQ24	Arthrobacter_phage	2.5e-08	50.7
WP_023907963.1\|2106969_2107530_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	5.5e-06	25.5
WP_023907964.1\|2107526_2108672_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	2.8e-97	48.9
WP_023906519.1\|2108764_2109118_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	9.1e-23	47.0
WP_023907965.1\|2109114_2109756_-	hypothetical protein	D0UIH7	Aggregatibacter_phage	6.7e-32	42.6
WP_060870491.1\|2109752_2110583_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	3.0e-77	52.6
WP_023906522.1\|2110579_2110897_-	hypothetical protein	NA	NA	NA	NA
WP_023906523.1\|2110896_2111667_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	2.2e-29	34.1
WP_023906524.1\|2111827_2112100_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_023907968.1\|2112096_2112501_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_088572706.1\|2112519_2114409_-	hypothetical protein	A0A2I7RBK9	Vibrio_phage	1.5e-31	34.8
WP_023907971.1\|2114556_2114979_-	hypothetical protein	NA	NA	NA	NA
WP_023907683.1\|2114975_2115413_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	1.8e-44	62.4
WP_023907685.1\|2116920_2117391_-	hypothetical protein	NA	NA	NA	NA
WP_038227495.1\|2117377_2117746_-	hypothetical protein	Q776V7	Haemophilus_phage	1.0e-16	37.7
WP_023907687.1\|2117732_2118212_-	hypothetical protein	M4SN98	Psychrobacter_phage	1.7e-08	28.0
WP_023907688.1\|2118208_2118580_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	1.8e-13	38.9
WP_023907689.1\|2118582_2118882_-	hypothetical protein	NA	NA	NA	NA
WP_023907690.1\|2118946_2119930_-	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	9.9e-51	39.3
WP_023906534.1\|2119939_2120422_-	hypothetical protein	NA	NA	NA	NA
WP_031336687.1\|2120449_2121640_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	3.6e-39	41.6
WP_023907692.1\|2121639_2122485_-\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	9.1e-29	33.1
WP_023907693.1\|2122557_2122896_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_023907694.1\|2122892_2123174_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	8.8e-13	45.2
WP_088572718.1\|2123222_2124527_-	DUF1073 domain-containing protein	H9C106	Vibrio_phage	9.0e-68	37.9
WP_088572612.1\|2124607_2126158_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	8.4e-113	44.9
WP_023907983.1\|2126108_2126507_-	hypothetical protein	NA	NA	NA	NA
WP_023907984.1\|2126811_2127273_-	hypothetical protein	A0A0S0N8C8	Pseudomonas_phage	1.0e-10	32.8
WP_010894063.1\|2127262_2127592_-	hypothetical protein	NA	NA	NA	NA
WP_023907985.1\|2127584_2128082_-	lysozyme	A0A2I7RLY1	Vibrio_phage	1.7e-27	53.8
WP_023907986.1\|2128184_2128916_-	site-specific DNA-methyltransferase	A0A097EWK8	Mycobacterium_phage	1.2e-61	51.5
WP_031336983.1\|2129004_2129703_-	hypothetical protein	C8CLH7	Xylella_phage	2.1e-103	83.5
WP_088572719.1\|2129722_2130085_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	1.4e-10	45.7
WP_031337814.1\|2130132_2130822_-	hypothetical protein	NA	NA	NA	NA
WP_023907989.1\|2130802_2131654_-	YdaU family protein	A0A142K7R2	Mycobacterium_phage	1.8e-16	62.0
WP_023907990.1\|2131697_2131988_-	hypothetical protein	NA	NA	NA	NA
WP_031336988.1\|2132108_2133221_-	hypothetical protein	C8CLG1	Xylella_phage	3.7e-110	57.0
WP_023907991.1\|2133423_2133807_-	hypothetical protein	NA	NA	NA	NA
WP_031336990.1\|2133803_2134052_-	hypothetical protein	NA	NA	NA	NA
WP_023907993.1\|2134048_2134237_-	hypothetical protein	NA	NA	NA	NA
WP_023907994.1\|2134297_2134579_-	hypothetical protein	NA	NA	NA	NA
WP_023907996.1\|2134680_2135052_+	hypothetical protein	NA	NA	NA	NA
WP_023907997.1\|2135231_2135477_-	hypothetical protein	NA	NA	NA	NA
WP_023907998.1\|2135475_2136255_+	helix-turn-helix transcriptional regulator	D0UIL9	Aggregatibacter_phage	6.3e-08	26.3
WP_023907999.1\|2136305_2136917_-	cell filamentation protein Fic	NA	NA	NA	NA
WP_004087046.1\|2136913_2137102_-	antitoxin VbhA family protein	NA	NA	NA	NA
WP_023908001.1\|2138228_2138687_+	hypothetical protein	NA	NA	NA	NA
WP_023908002.1\|2138686_2139088_+	hypothetical protein	C8CLG7	Xylella_phage	3.5e-55	80.5
WP_023908003.1\|2139084_2139276_+	hypothetical protein	NA	NA	NA	NA
WP_075584676.1\|2139319_2139847_+	hypothetical protein	NA	NA	NA	NA
WP_023908006.1\|2139965_2140157_+	hypothetical protein	C8CLG6	Xylella_phage	2.9e-15	70.3
WP_023908007.1\|2140177_2140552_+	hypothetical protein	U5P4J6	Shigella_phage	8.7e-16	45.5
WP_023908008.1\|2140571_2141393_+	YfdQ family protein	I3PUY7	Vibrio_phage	1.6e-46	42.2
WP_023908009.1\|2141408_2142335_+	phage recombination protein Bet	U6C6J0	Ralstonia_phage	1.0e-57	48.6
WP_023908010.1\|2142331_2143975_+	hypothetical protein	U6C712	Ralstonia_phage	2.1e-98	38.3
WP_031337033.1\|2144325_2145114_+	hypothetical protein	C8CLH5	Xylella_phage	5.5e-28	56.8
WP_023906569.1\|2145110_2145824_+	DNA-binding protein	G0ZND1	Cronobacter_phage	1.1e-43	59.4
WP_023908011.1\|2145881_2146334_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	7.3e-33	50.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009826

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection