CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009885	Xylella fastidiosa strain Hib4 chromosome, complete genome	4 crisprs	DEDDh,Cas9_archaeal,cas14i,csa3,DinG	3	1	11	0
NZ_CP009886	Xylella fastidiosa strain Hib4 plasmid pXF64-HB, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009885_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009885_1

506111-506211

Orphan

Consensus_repeat	Method
TGATGGGCAAAGGCCTCAAAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009885_1

>merge|NZ_CP009885|1|506111-506211|CRISPRCasFinder
TGATGGGCAAAGGCCTCAAAGGCACCCCACTGGTGTTGGCGATGACCACGCCCTCTGGATTGCGCACCATTGGATCTTTGGTGGGCAAAGGCCTCAAAGGC

>NZ_CP009885|1|1|506111-506211|CRISPRCasFinder
TGATGGGCAAAGGCCTCAAAGGC	ACCCCACTGGTGTTGGCGATGACCACGCCCTCTGGATTGCGCACCATTGGATCTT
TGGTGGGCAAAGGCCTCAAAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009885.1\|WP_155641646.1\|506651_507053_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_042462770.1\|501039_501252_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227812
NZ_CP009885.1\|WP_088371810.1\|501481_503044_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|227798
NZ_CP009885.1\|WP_088577701.1\|503040_505350_+\|Clp-protease-ClpP	unknown	unknown	gnl\|CDD\|132927
NZ_CP009885.1\|WP_023907313.1\|507173_507959_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_023907310.1\|505853_506078_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_088577703.1\|507955_508276_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_031336262.1\|508272_508746_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_088577707.1\|513782_515225_+\|DUF2163-domain-containing-protein	unknown	unknown	gnl\|CDD\|378314
NZ_CP009885.1\|WP_088577697.1\|494288_494906_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_088577706.1\|512605_513793_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_088577705.1\|510099_512613_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378817
NZ_CP009885.1\|WP_088577699.1\|496394_497861_+\|virulence-factor	unknown	unknown	gnl\|CDD\|227832
NZ_CP009885.1\|WP_042463315.1\|501248_501485_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_167701471.1\|509931_510099_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_023907315.1\|508742_509492_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_023907309.1\|505422_505782_+\|DUF2190-family-protein	unknown	unknown	gnl\|CDD\|227758
NZ_CP009885.1\|WP_088577700.1\|498257_498866_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_088577698.1\|494940_495342_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_088577704.1\|509488_509935_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009885.1\|WP_042462770.1\|501039_501252_+\|hypothetical-protein	gnl\|CDD\|227812	COG5525, COG5525, Phage terminase, large subunit GpA [Replication, recombination and repair].	1.36255e-13
NZ_CP009885.1\|WP_088371810.1\|501481_503044_+\|phage-portal-protein	gnl\|CDD\|227798	COG5511, COG5511, Bacteriophage capsid protein [General function prediction only].	0
NZ_CP009885.1\|WP_088577707.1\|513782_515225_+\|DUF2163-domain-containing-protein	gnl\|CDD\|378314	pfam09931, DUF2163, Uncharacterized conserved protein (DUF2163). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.04089e-23
NZ_CP009885.1\|WP_088577701.1\|503040_505350_+\|Clp-protease-ClpP	gnl\|CDD\|132927	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function.	2.54468e-56
NZ_CP009885.1\|WP_088577705.1\|510099_512613_+\|hypothetical-protein	gnl\|CDD\|378817	pfam12128, DUF3584, Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.	8.75264e-05
NZ_CP009885.1\|WP_023907309.1\|505422_505782_+\|DUF2190-family-protein	gnl\|CDD\|227758	COG5471, COG5471, Uncharacterized conserved protein [Function unknown].	7.4343e-48
NZ_CP009885.1\|WP_088577699.1\|496394_497861_+\|virulence-factor	gnl\|CDD\|227832	COG5545, COG5545, Predicted P-loop ATPase and inactivated derivatives [General function prediction only].	0

>NZ_CP009885.1|WP_023907310.1|505853_506078_+|hypothetical-protein
MFRNQPINHKIASALGLATVNSTVSASMAVLTESTLIEWISGVYIVLQVAYLLWKWRVDWKHQKMKRQRSTDHA
>NZ_CP009885.1|WP_023907309.1|505422_505782_+|DUF2190-family-protein
MANNFIKPGKHLTYTPPTAIKSGSVVLFGEELCVALNTINAGDSGELAHEGIFELPKAKGTGIREGTRPAWSVSTHEALTGGSPEKGDLINSCLAVETALAAAVKVKVKLLPGCGRWQT
>NZ_CP009885.1|WP_088577701.1|503040_505350_+|Clp-protease-ClpP
MTSTPHPTHRLADTLDPMTGAPMPPQARPPSVVALHASNPKQAELLLYGPIGDLFWEDGVTAASIIAQLSTVTAPLIHVRINSNGGVVSDGLAIYNALTTHPATIHVTIDGVAASIASLIAQAGTTRRVYPNSLMMIHGPQTGGWGFAEDLRDTAAMLDTMAAAMHTAYTSGATHPEAIRRMLSDGHDHWLTAQDMIAAGLADTIIDLAPQHTPADTPDATATAAALLSYLQAIATHPQDTITTALRRHIQATVTPSAFACLCSTQQHALITHIEDPTMKHHLNVILAQAGTTPPPPLNTPASSPPTGHPTPPPHGTTPPPPPAPGGAANDDPLTALEARNARIREVFAAFADVPGVPDLEANCLANPRLSVEHAQAQLLQRLPGGAGPLAATPRHGIHHLHLVHDEHTTRRQRVADGILARAGILTGPEADAARQDNPAAHEALWVLAEQSLKATGVDTRGLDREKVSKTALAQSTGDFPVILENVMHKMLLTAYRLQSYTWMRFCATGSLSDYRPHHRYHMGGFSDLKKVNENGEYENGVLSDAEKETIQAVRKGRILQITPEVLVNDDLGAFSRPTSRLAQAAARTIEKDVYALLAVNAGRGPNMSDGKPLFHADHRNIPVAAALSVESIDAARQLMAQQMDVGGNDFLDIVPTLWLGPLSLGSKARELNAQEYNDEAGKQQRKPNVVRGLFSDVVDSPRLKENAWYTFADPTLEPVIEVAFLNGVHTPTLEQDTNFRTDGLSWKVVHRYGVAAVGWRGATRTSGT
>NZ_CP009885.1|WP_088371810.1|501481_503044_+|phage-portal-protein
MTTASPRLHRLVAAFDRSLLQLAPAWAASRAQSRVKAVAYRQAYEAAEKTHLRQASRDFGSGNTIVTMTGTALRNQARHLDRNHDIISGGLSTLVQNIIGPSGINIVPTPRDVDGNLVESVVDAILPLYHAWSKRPEVTWMHDWPSVQRLLARTWLRDGEAFVQELRGFLPTLQHGSGVPFSIEMLEPDLVPLDYDDPSQHILQGIQRNAWGRATGYYIYTQHPGDPEVLLPEKKLVPSHLIRHIRTIDRIGQVRGISLLASTFTRIEDLKDYEESERIAAKIAACMAAVIIKGDPSQYDPDKYPSTGQRMMRFQPGMVFDTLNPGEKVDPIASTRPNPNLESYRDGQLRAIAAPMRISFSSLAKNYNGTYSAQRQELVEQYGAYGVLAHEFISQMVRPLYERLIAIAVTSGALTLPPNVPLANALGADYLPPSMPWIDPLKEINALTAQVQAGVRSLSSVIAERGGRMYDTVEQLSIDKQWAAERGLTLSVFPSATASPPPATTDVDEGDVPQDQAATT
>NZ_CP009885.1|WP_042463315.1|501248_501485_+|hypothetical-protein
MSLATDQVALLKDAYRKVLLGQSVRYGERQVTRADAKWISDELDKWLRRAAAEAAPSTSGPVRIAIADFRRDSGGDTP
>NZ_CP009885.1|WP_042462770.1|501039_501252_+|hypothetical-protein
MSLATDQVALLKDAYRKVPLGGLVLTAGVDLQHDRAEVHLIATGRGQRRYVVDYITWLAEALPNQHQRHT
>NZ_CP009885.1|WP_088577700.1|498257_498866_+|hypothetical-protein
MGSTVTMTTAEYAKHRGVSDSYIRRMRRKGNVVLGDDGRIHVNASDTLLDGMTNPVQGGKRGMTDPPASGVPPFTVMTPQGIPVQEAVRRERVARALKAELDLGKEAEQLTCVDEVNRAVFTLVRQALNQLRGMSGRLRKTLAAETDAGKVTQIIDTDVAHICKQMRDAAAALLKTNTPDADPVEAADANDTLELEEEGVSG
>NZ_CP009885.1|WP_088577699.1|496394_497861_+|virulence-factor
MTRPVITLLDGGKGRTQGGGGGHGGAPGSDDWTQQLTRTRDGHVEGTMHNLITIIENDERLRDLFWLNDSSNQVVMARPAPWHGSTRDEFVDADSSELAAWLQHPERYGMKCSDDNVLKAVIAVARRHRRHPIRDYLTGVQWDGTPRVETMLIDMFGASDSTYSRQASLCFMVGAVARVLWVDRNNPSIGAKVDFMLVLEGPQGKHKSTSLSELFGTYWFVETAESPTGKDFYQVIQGCWGVEIGEMDSFGKADVTAVKVAITRRTDKFRAPYERLPSSYRRECVFVGTTNDREYLKDATGGRRFLPVRADGNVDVSRIVAERDQLWAEAVRLFLDRFPYWVLPDDAPAEQAARYIGDSWEARVERFLAGQFRKAGDGREIAPQRLKFTAGRVLWTTTDELLEFAIGMDPARHDTSAQMRVAKIMKRLGRDPVQGDGCVEDTWDHLRKRWPDTKTREQRWVREGACINEGAPVSKPLDDNGRDDAPDF
>NZ_CP009885.1|WP_088577698.1|494940_495342_-|hypothetical-protein
MPSLRLTPLRPLTVDLYPPLHPKVRGDVFPTSWLGRTGGVRAHLRQRLDVRPPLRPWLITERVDGLTQTPRHTHVPPRNSNTPCLHRNASASTRIRSRSANAAAPLKPGSLEYNASSAARNPAHCRGVIVPLP
>NZ_CP009885.1|WP_088577697.1|494288_494906_+|hypothetical-protein
MFGMTDRVPLSLEARMKREPRFLPPLQSVIYGYTRRMLDQTAMNAQSFAMVLAETYLSLTAPDVRGVALRIGDDVAEDMRNNAQVLRRYMDGTVKTLPADLVDAWMLALPEPYRGECERDLARRRGVLPVRLPAANPAARVVGVAELVSEFAQLLEVIAPALADGRIDTNDLPFARRILDESDDVIAAVLGIRGQVQAMFQEGVA
>NZ_CP009885.1|WP_155641646.1|506651_507053_+|hypothetical-protein
MPILPFLLIVALLLWISTGLGAFFYGKRLGIQTQIAQQNTALQQAMQQHDAIHTTVAAAGTHAITSVATAVTHNRIATDESARHIRIIRVPTDCSVIADDIVHELRLARDTANSALRSGLRPAPPAASAADSK
>NZ_CP009885.1|WP_023907313.1|507173_507959_+|hypothetical-protein
MTDLLKITVDADAMLGRRFTALESQHLPFAIVQACNTTAFQIRDTWKRTALRIFDRPTPLTIHAALYKKATKQTLWAEIFLRDEAFKGTPPATYLLPQVEGGTRRLKAMERLLMSMQIMPRHMFAVPGDGAPRDRYGNVNVGQVRQILSQLRAGLETGYISNETPERKARRLKRQRQRGGGGSYFVVKEQRGRLRPGIYERVTFGSGSAARSMFIFTTYVHYTPRYNIFGLAQKEWDRLMPFYFNRELQKAIDTSIYRGQA
>NZ_CP009885.1|WP_088577703.1|507955_508276_+|hypothetical-protein
MSEATFKHAVDAAFFEAWADVVGGIDATYTSPRGVITPVQVLVDHGVLQFGDDQVPVSVYSTFITFRRDQIEPEPNATLTLAQATYTLTQRVDSSDASLSKWAVRP
>NZ_CP009885.1|WP_031336262.1|508272_508746_+|hypothetical-protein
MNSPRATLLSSVEAVLTQITTAAGYLTDVGRTFTREPAPVLGETTDACITVIWTRQERATIAALTHTHRLTTFQVIAKVPVSFSDAQARLDAITTDIETAMNAKQAQFPVGFHCPQYQSAEPLIPPQHTVGWIGVCFTYTSHIPIHHPAPSSTEHQP
>NZ_CP009885.1|WP_023907315.1|508742_509492_+|hypothetical-protein
MTHTDYSYVGSGQVLIKEHGAAAPFLPIGNCSKLEFSPQVNTLQLQDFTNPGGGIRNRIDRVNDVQFTLTFHDFSAENFARFLRGTSTVTDLGTVAAEPVVGYAGGWTPLAKIAATITAVKPSGGGTPYTAGEDYLLEHGGLTIPLESAIPIPEPGAPNIQVDYTFARHTVTEAFVHAAQQYTLVFTGMNEARSGKPVRVIAHKISGGVLSTLGLLGEDYGAGDVSGSLLADTTQASGLSKFFQVVVVA
>NZ_CP009885.1|WP_088577704.1|509488_509935_+|hypothetical-protein
MMTPDTLDLLDPPPHLVPFRGESLPIRPLTIGQLPQFVRLTRPLLDALLDVPLDTLPQADAALLDALLTLIAEHGDAAIAAAALLTDKPIEWIQAGDPAEFITLVQAIFAVNRDFFTHRLTAQRGTPVPLANGTGPIPSNTSLSTATP
>NZ_CP009885.1|WP_167701471.1|509931_510099_+|hypothetical-protein
MTEIKGYTLAQLRAFSHAAGRASVRRQRDAAITLRAAQYAQGDFERYIAAMEKDL
>NZ_CP009885.1|WP_088577705.1|510099_512613_+|hypothetical-protein
MASSRGANLRVRISADLADIKQGLGLLRGELAKVKEAASHAAPQTASWTKGIDSVRQALGNLAGAYIGVQTVTTAIRGVFTALGQMDRMDKFVQMSGVSAENISKLAYAAKSSSVDVETLAKGIGRLNKDIISGDSIIHKLGISLKDAAGNTRDVSHVFGDLADVFAQLPDGAEKAALAAKLFGNRMGPGLIPVLNLGKEGLKEFGDQAEATGNVMSTHAAQAASHFSDQLGLLKSQATGMFNIAAQQLLPVLTTIVKTLNDSGEAAHSAATGGRALAAAFKVVVAAGIIVKNVIEGIVNVLAFLGTTAFNVGKFITQSLVGSFRLLGDAVKGLVSGRNPLDVFNEYLSGAAQRARQSQADLADMKNGIIGGFAAAKQGIFESARDILNGVSALFSSIESETKGVEQSANRAGTATQGLLDKVRRLLAGEGGSTAHKNDTRDQLAAIAAAASLVQDEVKRAMTALDQQFSDIKDADKSAAAITAYYEKRITLQQRLIDLQIQQARAELALATESGKRLQIEAKIAILERDRAQVAIDMGRQRFKAQEALNQKIADSFGHRLSGITSHLAAHENSISAQVNAGMLGMAEGERQLNTLRTQALETLRALRTDQQRYLDSMKADGKDVTDAVQGLAQIDQAIAEVTARQQVWRSHLEDIGSGALGGFFNDLIEGAKSFKDAFTDMVRSFLQGVAQMMARELALKAISNIMASLGGGSRIGALLGAKVALAHGGGTAGALRLHRNTINPLLFGTAPRYHSGGVAGLQHDEIPAILKRGEIVRTTQQEAALQTRLNAGQSAPGPIHNIIVFGEDELANAMAGAAGEKVIVSHVRRNRGAIHG
>NZ_CP009885.1|WP_088577706.1|512605_513793_+|hypothetical-protein
MADPVAWTFAPGGGYTETFDWLTDVLQAPTGGTQHRRLRQSPRATLRFWALESGASRRWMDVLLRAHSAARWWVPIAIDVRALAVTAVAGATTLVIAVQGARFTVGGHVLIVGPDPRHYEVHRITALGEQTLTLATGLSFSWGVGTTLYPVRLGRLSEPPQVGRFTADDSALVSLQFRLEDPLDSSAAIPGATYRGYPVFDTLPPVWTSDPVWVPQRHIHVQDDTISTPWMTDTAGVALGTTTMQYAPDETAAILTFRSILFALAGRWAPLWVPSWIHDLSLAADVRAGQRTIDIVGPLLSTPSGALQANRRDIRIALYSGAVWYRRITAVTSRGSRIERLTLDSRLPAAFTLTQVKMISFITFSVQDADTAVLRYFGPQVAQCQIVWRELHHEL
>NZ_CP009885.1|WP_088577707.1|513782_515225_+|DUF2163-domain-containing-protein
MSFSAFELGRFTGRPVRLFVFTRQHLTWRFANSDRDIVSGGFTYLAARIDRSDIQHTTEREKDQITITFPYLLNPAADPLPVTQALGNQWRPYHPVDVIRVVCMVMHVGDTDPPQVEWVGRVIQPRLSDTEMELTCAPHASIALARNQGAKFQTSCWKTVYSTGLRGCNLSPGAHRVTGRVAKLEQLPTDPPQGAHVLVPDMAAHLASLAGQVATWTYEAQVPHSGTVASVLKFHVRFNNVTAIAVGTVLHWTAADGIAHHGTVTGLFGTVAVLNTTEGITAGSVCHWSVAQARQGTATIMQAYDAYDWVSQAAGGSSSGFSWDDASGLHDAHSGTAWSVTYTTRSALVLSDVTGLEEGSSITVALSGSGVSGTLSAVAGLQLTAAHFASAAYSLEGGTLTYTDANGLLIRRSIASHTLGSTTLTLSAGGPNPVVNDAVTVLPTCPRTWDACAARGNTIHFGGAVYRPLHTPDGVSMSWG

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Crispr_ID: NZ_CP009885_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009885_2

1749660-1749746

Orphan

Consensus_repeat	Method
CGGCGCTGAGGGTGCCGGCGGTGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009885_2

>merge|NZ_CP009885|2|1749660-1749746|CRISPRCasFinder
CGGCGTGGAGGAGGCCGCGGTTGGTGAGGTCGCCAGCGGTGGTGAGGGTGAGCAGGCCGGTGGCGCTGAGGGTGCCGGCGGTGTCGA

>NZ_CP009885|2|2|1749660-1749746|CRISPRCasFinder
CGGCGTGGAGGAGGCCGCGGTTGGTG	AGGTCGCCAGCGGTGGTGAGGGTGAGCAGGCCGG
TGGCGCTGAGGGTGCCGGCGGTGTCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009885.1\|WP_075584628.1\|1739255_1739480_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_031336449.1\|1756847_1757414_+\|elongation-factor-P-like-protein-YeiP	unknown	unknown	gnl\|CDD\|131233
NZ_CP009885.1\|WP_088371651.1\|1754341_1754734_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009885.1\|WP_088578198.1\|1759302_1760544_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP009885.1\|WP_088578195.1\|1753605_1754007_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009885.1\|WP_088578193.1\|1740461_1740788_-\|DUF769-domain-containing-protein	unknown	unknown	gnl\|CDD\|283284
NZ_CP009885.1\|WP_088578190.1\|1738128_1738737_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP009885.1\|WP_060871820.1\|1736751_1738005_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP009885.1\|WP_023906336.1\|1760677_1762129_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP009885.1\|WP_088578199.1\|1762203_1763637_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP009885.1\|WP_167701497.1\|1742776_1743097_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_031336451.1\|1756315_1756765_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_088578196.1\|1755294_1756215_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP009885.1\|WP_088578191.1\|1739507_1739837_-\|cytosolic-protein	unknown	unknown	gnl\|CDD\|372824
NZ_CP009885.1\|WP_088578197.1\|1757711_1759100_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP009885.1\|WP_088371649.1\|1754011_1754284_-\|hemagglutinin	unknown	unknown	unknown
NZ_CP009885.1\|WP_167701479.1\|1740962_1741355_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009885.1\|WP_046420352.1\|1742405_1742780_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188533
NZ_CP009885.1\|WP_088578601.1\|1741365_1741617_-\|hemagglutinin	unknown	unknown	unknown
NZ_CP009885.1\|WP_088578194.1\|1741896_1742283_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315

Protein	Function_ID	Function_description	E-value
NZ_CP009885.1\|WP_088371651.1\|1754341_1754734_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	1.22424e-44
NZ_CP009885.1\|WP_088578198.1\|1759302_1760544_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP009885.1\|WP_088578195.1\|1753605_1754007_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	2.02879e-47
NZ_CP009885.1\|WP_088578193.1\|1740461_1740788_-\|DUF769-domain-containing-protein	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	4.79499e-08
NZ_CP009885.1\|WP_088578190.1\|1738128_1738737_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	6.40794e-22
NZ_CP009885.1\|WP_060871820.1\|1736751_1738005_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.1644e-56
NZ_CP009885.1\|WP_023906336.1\|1760677_1762129_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	8.37541e-130
NZ_CP009885.1\|WP_088578199.1\|1762203_1763637_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.24662e-122
NZ_CP009885.1\|WP_088578196.1\|1755294_1756215_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	4.27398e-135
NZ_CP009885.1\|WP_088578191.1\|1739507_1739837_-\|cytosolic-protein	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	8.97597e-25
NZ_CP009885.1\|WP_088578197.1\|1757711_1759100_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	5.55342e-126
NZ_CP009885.1\|WP_031336449.1\|1756847_1757414_+\|elongation-factor-P-like-protein-YeiP	gnl\|CDD\|131233	TIGR02178, Elongation_factor_P-like_protein, elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae. [Protein synthesis, Translation factors].	2.8397e-112
NZ_CP009885.1\|WP_167701479.1\|1740962_1741355_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	8.1919e-53
NZ_CP009885.1\|WP_046420352.1\|1742405_1742780_-\|hypothetical-protein	gnl\|CDD\|188533	TIGR04018, thioredoxin_reductase, putative bacillithiol system oxidoreductase, YpdA family. Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete. [Unknown function, Enzymes of unknown specificity].	0.00972606
NZ_CP009885.1\|WP_088578194.1\|1741896_1742283_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	4.41045e-46

>NZ_CP009885.1|WP_167701497.1|1742776_1743097_-|hypothetical-protein
MIITGPTQPDAFNGTFNLLNTPDRLYNLLGPEKFWEQVNKPFLDGAIKRGDDIVLATKPEERFLNRLASDGSGRIERTGFGREYDYLIGKGYVYDASSGMMKKVKK
>NZ_CP009885.1|WP_046420352.1|1742405_1742780_-|hypothetical-protein
MIRSDYQSYLGKLKKYFRDFGVDYSVFSEEELGAKFYLYSDWMIELECEKFGSGVTVVIRHPEIGRKDGYAIWILMKAFESLKGKSYGDPSVENQIRFLVEEKELIFQYPSFYEAEYTRINDVH
>NZ_CP009885.1|WP_088578194.1|1741896_1742283_-|DUF596-domain-containing-protein
MLTQQQLDIIYEDLGRPLHIMWFKILREHGIPPQRSDPDSFEERKKDFLFLIGKLLDDGKLKLGDRKNEVIIEGTTAELVEKFRKCFPTSDEDLMKGTWLVTEECPFIAVWVHKGEGKDGEDYYEWAD
>NZ_CP009885.1|WP_088578601.1|1741365_1741617_-|hemagglutinin
MLESEAFSDQKIREHAQELAGDVPLKESRRKGVYRADLSDGTIVHLRSVSSSSNETKARWTIDIENNPSLREITNKRIEIKFR
>NZ_CP009885.1|WP_167701479.1|1740962_1741355_-|DUF596-domain-containing-protein
MLTQDMLTQDPDFFCEGEPLHFLWGYIRDAHGLSTGQVDHDSFEERKNDFFFVLGKLMDDGRLKLGNRKTELIMEGSTAELVEMFRSCFPASDEELIEGIWLVIEECPFVVVWVHKGAGENGEDYYDWCF
>NZ_CP009885.1|WP_088578193.1|1740461_1740788_-|DUF769-domain-containing-protein
MSGREFEPIPYEPNVPGGSNKAGNVKVFDSQVLTDKEIRQYAETWAQGAPFKRMSEGVYRADASDVTIVHLRSVSSSSNVTKARWTIDIENNSRVSEITNERVEIKFR
>NZ_CP009885.1|WP_088578191.1|1739507_1739837_-|cytosolic-protein
MTDAAGRVKSIEANLFLKEMDHNTYQQRCVGKCGEVGDEGGHLIASSLGRAGDRINLVSQASALNRVGWRKMENEFAKALQEGKSISVKIDLSYLTSIGVSPNQCAAVR
>NZ_CP009885.1|WP_075584628.1|1739255_1739480_+|hypothetical-protein
MKASYTLPEKTSHFQKMSLPALITLYSKHRFLKFDSLEQQNTHRDLLKVNAFLMGNIPTNVFRAAPVHQNKSPK
>NZ_CP009885.1|WP_088578190.1|1738128_1738737_-|rhomboid-family-intramembrane-serine-protease
MITLILIAMNAVVSWLSFNNSRLLDRLVLWPPAIDRDRQYDRLITYGFVHANISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVSILPSYIKNQKNPKYLSLGASGAVSAVLFAAVLLQPWALIVVLFIPAPAIFYAVFYVGYSIWIERRGDDGINHSAHLSGAAFGVVFMLCMEPQLLQVFLMQLSMPRFG
>NZ_CP009885.1|WP_060871820.1|1736751_1738005_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNTRWYFIALVFDLMGCSTTPHKSDAYPSPATSQIIGGKPTQTASICPPTSPYPPAQELPGTRDGYTKNGLYKPGIKDSVPDQLPDVSCIPEPFVTIEPRSAIGNQSPYVVLGKSYRVLDKAKGYVQRGVASYYGTKFHGRLTSNREVYDMYAFTAAHKTLPLPSFALITNLDNGESVVVRVNDRGPFHDDRLIDLSYAAAVKLGFTENGLANVEVRVLSEDDNPMILARHNKRIAPTTANPVATTMAPTATAQPTTPTNNIAASAKPDNPINHLQPLPTNAPLIATLTPMGSPTTIATRQPESPTITSTNASKATPPSEATKDTLTDSLHTPQVTATTALDSILVQVASFASHENASRALTQLTSAGIVGANLSAIVNSGRTFWRLRINAPNHDTALELIRRITHLGLGRPEIVGL
>NZ_CP009885.1|WP_088578195.1|1753605_1754007_-|DUF596-domain-containing-protein
MLTQEQIDFIYEDLIHAFDFLWFNIGHAYGMYAAQTDKDSFAERKNDFLFLLGKLLDEGKLKLAKKGKFLSGTTTELVEMFRKSFPDSDEAVDLGGAGIWFFTDECPAGAVWVFKEEGENEQGENNEDCYLWT
>NZ_CP009885.1|WP_088371649.1|1754011_1754284_-|hemagglutinin
MSDTAKAFESQELSDQQIKDYAQELAGNIPLKEIRPGIYVSKQEGKAILQLRSVFSSQELSEWRWVITFLNFPDLMAKVSNRKAIELIFR
>NZ_CP009885.1|WP_088371651.1|1754341_1754734_-|DUF596-domain-containing-protein
MLTEEQIDIIREGPLYFLEIIWFRIGQMYGLSPGQIDHDSFEERKNDLFFLLGKLLDEGQIKIGNHKGNFISGPTAALVEMFRNSFPDSDEEAQAAWFVTECPGGIVWVLKGQGEKGQDVYKWWLFTDEK
>NZ_CP009885.1|WP_088578196.1|1755294_1756215_+|50S-ribosomal-protein-L11-methyltransferase
MAFLEVSVQCQGRSQARYEEVLESFGALAVTLLDADADTVRERGVFEPGVGETVLWDVVVLNALFPVETDALGLLAGLEGAEPGLDWGGVRFRVVVDEDWERVWMDQFQPMRFGERTFIVPWNQAVPVEASGMDAAVVRLDPGLAFGSGTHPTTGLCLRWLDRLGGDGVLGGGEVLDFGCGSGILALAALKLGAVYAVGVDNDPQALLASRENALRNGVAERLEVYLPAEAPVRRYPVVVANILASTLVALAEWLAGCVAPGGRLALSGILRGEEKEVLRCYAVWLDVLGCEEEDGWIRIDGVRRC
>NZ_CP009885.1|WP_031336451.1|1756315_1756765_+|hypothetical-protein
MSAIVLAVALAAGQVKEPPAAVGMSESQAEQSAMLLAHCAGVWDWMGNIEKVAGKPSRVEQFHRKADEAETAAMWVLASQHYVATGNTASGAHWKSLTRPKREAGLAHMNALAEPGQEKASLAAIKGCQGMLQEQEKILHMMQKTKVKQ
>NZ_CP009885.1|WP_031336449.1|1756847_1757414_+|elongation-factor-P-like-protein-YeiP
MKASEMKKGSIVEYNNGTYQIRDIQRSSPQGRGGNVRFRFVMYSVPGGSKLEASFDADEMLTAVELLRREASFSYKDGEAFVFLDEEDYTLYTLEAEAIGDNAGYISEGLSGCYVQLIDASPVALQLPQHVVLEVVDTPPELKGGTATKRPKPAKLITGIEVMVPEYITTGERILVNTTTGAFGGRAS
>NZ_CP009885.1|WP_088578197.1|1757711_1759100_-|FAD-binding-oxidoreductase
MNDSRLTSLHQTLPMLRLKTEPADLQHYGRDWTRRFTPAPLAIALPATVQEVQAIVRWANDAHIAIVPSGGRTGLSGGAMATNGELVLSLERMNKMLRFDPMDRTMTVQAGMPLEAVQAAARQHGLLYPVDFAARGSCSIGGTIATNAGGIRVVRYGNTREWIAGLNVVTGTGELLTLNHALIKNSSGYDFRHLMIGSEGTLGIVVEATLRLTDPPPPTKVMLLALPTFDVLMQVFAAFRAQLQIEAFEFFTQRALPHVLAHGAQAPFEHLYPYYVVTEFPCADATQETTALTVFETCMEQGWVLDGVISQSDAQAAQLWRLRESITESIAPYTPYKNDIAVRIAAMPAFLEQAQALLSQAYPEFEVLWFGHIGDGNLHINVLKPHTVPQTDFIHTCEHVTALLADLLQLFRGSISAEHGIGLIKKPYLHSTRSPAEIALMRQLKRAFDPKWILNPGKVFDP
>NZ_CP009885.1|WP_088578198.1|1759302_1760544_+|phosphoglycerate-dehydrogenase
MPPTKTSFPKQDIRILLLEGVSHSGIETFRAAGYSQIKIHTTSLPEEALQAEIAEAHIIGIRSRTQLNAEVLGHAKRLMAIGCFCIGTNQVDLDTAELSGIPVFNAPYSNTRSVAELIIAEAILLLRGIPQKNAECHRGGWSKSAINSHEARGKVLGIVGYGHIGTQVSVLAEAMGMQVIFYDIESKLSLGNARPAASLDELLGIADVVTLHVPETAATKNMLGHAELARMKPGAHLINASRGTVVEIDALDAALVSGHLGGAAVDVFPSEPKGNSDPFISPLSRHDNVILTPHIGGSTLEAQDNIGIEVAAKLIRYSDNGSTLSAVNFPEVSLPEHMGSMRLLHIHRNVPGVLSHINELFSRHNVNIDGQFLRTDATLGYVVIDIGASQTQALALKEALTQVPGTLRTRLLY
>NZ_CP009885.1|WP_023906336.1|1760677_1762129_+|amino-acid-permease
MLKKHLFIVKPIEPTNHTGTGKGETQLKRSLTAGQLVMLGIGAVIGAGIFVLSGHAAAEYAGPAVVLSYILAGIACALAGLCYAEFAAMLPVSGSAYSYAYATLGEFTAWFIGWNLVLEYMFSASTVAVGWSGYLNSFLSSFGYGLPASLSSAPLDVVDGRLIYSGGLINLPAVAIVAAISGLCYVGITQSAFVNSITVAIKVSVIVLFIAFAARYVNPDNWVPFVPDNAAPGKYGMEGVIRGAAVVFFSYIGFDAVSTTAGEAKNPQRDMPIGILGSLAICTVIYIAFSGVLTGLMHYSQLDTPKPVATALETYPTLSWLKHVVEIGAIAGLSSTMLMMLMAQPRIFYAMSQDGLLPKLLSKVHPKFQTPHVGTLLVGACACTLAGLFPISLLGDLVSMGTLLAFATVCIGIVVLRRTRPDLPRPFRVPMYWVIAPAGAAACLYLFWQPFTEHWPLMVGWTVLGLVMYGLYGYHHSKLRHGG
>NZ_CP009885.1|WP_088578199.1|1762203_1763637_+|amino-acid-permease
MFKQLWATKLSQPSQDSAEGLSLQRVLGVWGLTALGIGAVIGGGIFVITGQAAANHAGPAIMLSFALAAICCTFCALAYAEFAAMVPVSGSAYTYTYATFGELAAWFIGWMLVLEYGVSAAAVAVSWSGYFLSLLQHLGIHLPAALVNAPLDGTLHATGAIANLPAASIVLLLTWLCYFGIRKSSKINIAMVALKSGLILLIIGVGWKYVNPDYWQPFIPPNQGPGKYGWDGVLHGASMVFFAYIGFEAVSVAAQESHRPQRDLPISMMSALAICTVLYIMMAAVMTGLVPYTQLGTDEPVVTAVAAHPQLGWLRVVVEIGALVGLSSVVLVMLIGQPRIFMIMAGDGLLPPIFSTIHSKHRTPHINTVITGLGIALLAAVFPLDVLGELTSMGTLIAFAAVCAGVLILRCTRPDLPRPFRMPAAWLFCSAGVLSCITLLSAMTRHNWMLMSVWTVLGFALYFGYGYRHSKLHREST

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Crispr_ID: NZ_CP009885_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009885_3

1749834-1749986

Orphan

Consensus_repeat	Method
CGGCGCTGAGGGTGCCGGCGGTGTTG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP009885_3

>merge|NZ_CP009885|3|1749834-1749986|CRISPRCasFinder
CGCCGCTGAGGAGGGTGCCGGTGTGGTTGCTCAGGTGGTCTGCAGTGAGGTCCAAGGTGCCGCCGGCGCTGAGGGTGCCGGCGGTGTTGGTGAGGGTGTCGCTCAGGGTAAGGGTGAGGTTTTGAGCGGCGCTGAGGGTGCCGGCGGTGTTGT

>NZ_CP009885|3|3|1749834-1749986|CRISPRCasFinder
CGCCGCTGAGGAGGGTGCCGGTGTGG	TTGCTCAGGTGGTCTGCAGTGAGGTCCAAGGTGCCGC
CGGCGCTGAGGGTGCCGGCGGTGTTG	GTGAGGGTGTCGCTCAGGGTAAGGGTGAGGTTTTGAG
CGGCGCTGAGGGTGCCGGCGGTGTTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009885.1\|WP_075584628.1\|1739255_1739480_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_031336449.1\|1756847_1757414_+\|elongation-factor-P-like-protein-YeiP	unknown	unknown	gnl\|CDD\|131233
NZ_CP009885.1\|WP_088371651.1\|1754341_1754734_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009885.1\|WP_088578198.1\|1759302_1760544_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP009885.1\|WP_088578195.1\|1753605_1754007_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009885.1\|WP_088578193.1\|1740461_1740788_-\|DUF769-domain-containing-protein	unknown	unknown	gnl\|CDD\|283284
NZ_CP009885.1\|WP_088578190.1\|1738128_1738737_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP009885.1\|WP_060871820.1\|1736751_1738005_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP009885.1\|WP_023906336.1\|1760677_1762129_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP009885.1\|WP_088578199.1\|1762203_1763637_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP009885.1\|WP_167701497.1\|1742776_1743097_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_031336451.1\|1756315_1756765_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_088578196.1\|1755294_1756215_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP009885.1\|WP_088578191.1\|1739507_1739837_-\|cytosolic-protein	unknown	unknown	gnl\|CDD\|372824
NZ_CP009885.1\|WP_088578197.1\|1757711_1759100_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP009885.1\|WP_088371649.1\|1754011_1754284_-\|hemagglutinin	unknown	unknown	unknown
NZ_CP009885.1\|WP_167701479.1\|1740962_1741355_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009885.1\|WP_046420352.1\|1742405_1742780_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188533
NZ_CP009885.1\|WP_088578601.1\|1741365_1741617_-\|hemagglutinin	unknown	unknown	unknown
NZ_CP009885.1\|WP_088578194.1\|1741896_1742283_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315

Protein	Function_ID	Function_description	E-value
NZ_CP009885.1\|WP_088371651.1\|1754341_1754734_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	1.22424e-44
NZ_CP009885.1\|WP_088578198.1\|1759302_1760544_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP009885.1\|WP_088578195.1\|1753605_1754007_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	2.02879e-47
NZ_CP009885.1\|WP_088578193.1\|1740461_1740788_-\|DUF769-domain-containing-protein	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	4.79499e-08
NZ_CP009885.1\|WP_088578190.1\|1738128_1738737_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	6.40794e-22
NZ_CP009885.1\|WP_060871820.1\|1736751_1738005_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.1644e-56
NZ_CP009885.1\|WP_023906336.1\|1760677_1762129_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	8.37541e-130
NZ_CP009885.1\|WP_088578199.1\|1762203_1763637_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.24662e-122
NZ_CP009885.1\|WP_088578196.1\|1755294_1756215_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	4.27398e-135
NZ_CP009885.1\|WP_088578191.1\|1739507_1739837_-\|cytosolic-protein	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	8.97597e-25
NZ_CP009885.1\|WP_088578197.1\|1757711_1759100_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	5.55342e-126
NZ_CP009885.1\|WP_031336449.1\|1756847_1757414_+\|elongation-factor-P-like-protein-YeiP	gnl\|CDD\|131233	TIGR02178, Elongation_factor_P-like_protein, elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae. [Protein synthesis, Translation factors].	2.8397e-112
NZ_CP009885.1\|WP_167701479.1\|1740962_1741355_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	8.1919e-53
NZ_CP009885.1\|WP_046420352.1\|1742405_1742780_-\|hypothetical-protein	gnl\|CDD\|188533	TIGR04018, thioredoxin_reductase, putative bacillithiol system oxidoreductase, YpdA family. Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete. [Unknown function, Enzymes of unknown specificity].	0.00972606
NZ_CP009885.1\|WP_088578194.1\|1741896_1742283_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	4.41045e-46

>NZ_CP009885.1|WP_167701497.1|1742776_1743097_-|hypothetical-protein
MIITGPTQPDAFNGTFNLLNTPDRLYNLLGPEKFWEQVNKPFLDGAIKRGDDIVLATKPEERFLNRLASDGSGRIERTGFGREYDYLIGKGYVYDASSGMMKKVKK
>NZ_CP009885.1|WP_046420352.1|1742405_1742780_-|hypothetical-protein
MIRSDYQSYLGKLKKYFRDFGVDYSVFSEEELGAKFYLYSDWMIELECEKFGSGVTVVIRHPEIGRKDGYAIWILMKAFESLKGKSYGDPSVENQIRFLVEEKELIFQYPSFYEAEYTRINDVH
>NZ_CP009885.1|WP_088578194.1|1741896_1742283_-|DUF596-domain-containing-protein
MLTQQQLDIIYEDLGRPLHIMWFKILREHGIPPQRSDPDSFEERKKDFLFLIGKLLDDGKLKLGDRKNEVIIEGTTAELVEKFRKCFPTSDEDLMKGTWLVTEECPFIAVWVHKGEGKDGEDYYEWAD
>NZ_CP009885.1|WP_088578601.1|1741365_1741617_-|hemagglutinin
MLESEAFSDQKIREHAQELAGDVPLKESRRKGVYRADLSDGTIVHLRSVSSSSNETKARWTIDIENNPSLREITNKRIEIKFR
>NZ_CP009885.1|WP_167701479.1|1740962_1741355_-|DUF596-domain-containing-protein
MLTQDMLTQDPDFFCEGEPLHFLWGYIRDAHGLSTGQVDHDSFEERKNDFFFVLGKLMDDGRLKLGNRKTELIMEGSTAELVEMFRSCFPASDEELIEGIWLVIEECPFVVVWVHKGAGENGEDYYDWCF
>NZ_CP009885.1|WP_088578193.1|1740461_1740788_-|DUF769-domain-containing-protein
MSGREFEPIPYEPNVPGGSNKAGNVKVFDSQVLTDKEIRQYAETWAQGAPFKRMSEGVYRADASDVTIVHLRSVSSSSNVTKARWTIDIENNSRVSEITNERVEIKFR
>NZ_CP009885.1|WP_088578191.1|1739507_1739837_-|cytosolic-protein
MTDAAGRVKSIEANLFLKEMDHNTYQQRCVGKCGEVGDEGGHLIASSLGRAGDRINLVSQASALNRVGWRKMENEFAKALQEGKSISVKIDLSYLTSIGVSPNQCAAVR
>NZ_CP009885.1|WP_075584628.1|1739255_1739480_+|hypothetical-protein
MKASYTLPEKTSHFQKMSLPALITLYSKHRFLKFDSLEQQNTHRDLLKVNAFLMGNIPTNVFRAAPVHQNKSPK
>NZ_CP009885.1|WP_088578190.1|1738128_1738737_-|rhomboid-family-intramembrane-serine-protease
MITLILIAMNAVVSWLSFNNSRLLDRLVLWPPAIDRDRQYDRLITYGFVHANISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVSILPSYIKNQKNPKYLSLGASGAVSAVLFAAVLLQPWALIVVLFIPAPAIFYAVFYVGYSIWIERRGDDGINHSAHLSGAAFGVVFMLCMEPQLLQVFLMQLSMPRFG
>NZ_CP009885.1|WP_060871820.1|1736751_1738005_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNTRWYFIALVFDLMGCSTTPHKSDAYPSPATSQIIGGKPTQTASICPPTSPYPPAQELPGTRDGYTKNGLYKPGIKDSVPDQLPDVSCIPEPFVTIEPRSAIGNQSPYVVLGKSYRVLDKAKGYVQRGVASYYGTKFHGRLTSNREVYDMYAFTAAHKTLPLPSFALITNLDNGESVVVRVNDRGPFHDDRLIDLSYAAAVKLGFTENGLANVEVRVLSEDDNPMILARHNKRIAPTTANPVATTMAPTATAQPTTPTNNIAASAKPDNPINHLQPLPTNAPLIATLTPMGSPTTIATRQPESPTITSTNASKATPPSEATKDTLTDSLHTPQVTATTALDSILVQVASFASHENASRALTQLTSAGIVGANLSAIVNSGRTFWRLRINAPNHDTALELIRRITHLGLGRPEIVGL
>NZ_CP009885.1|WP_088578195.1|1753605_1754007_-|DUF596-domain-containing-protein
MLTQEQIDFIYEDLIHAFDFLWFNIGHAYGMYAAQTDKDSFAERKNDFLFLLGKLLDEGKLKLAKKGKFLSGTTTELVEMFRKSFPDSDEAVDLGGAGIWFFTDECPAGAVWVFKEEGENEQGENNEDCYLWT
>NZ_CP009885.1|WP_088371649.1|1754011_1754284_-|hemagglutinin
MSDTAKAFESQELSDQQIKDYAQELAGNIPLKEIRPGIYVSKQEGKAILQLRSVFSSQELSEWRWVITFLNFPDLMAKVSNRKAIELIFR
>NZ_CP009885.1|WP_088371651.1|1754341_1754734_-|DUF596-domain-containing-protein
MLTEEQIDIIREGPLYFLEIIWFRIGQMYGLSPGQIDHDSFEERKNDLFFLLGKLLDEGQIKIGNHKGNFISGPTAALVEMFRNSFPDSDEEAQAAWFVTECPGGIVWVLKGQGEKGQDVYKWWLFTDEK
>NZ_CP009885.1|WP_088578196.1|1755294_1756215_+|50S-ribosomal-protein-L11-methyltransferase
MAFLEVSVQCQGRSQARYEEVLESFGALAVTLLDADADTVRERGVFEPGVGETVLWDVVVLNALFPVETDALGLLAGLEGAEPGLDWGGVRFRVVVDEDWERVWMDQFQPMRFGERTFIVPWNQAVPVEASGMDAAVVRLDPGLAFGSGTHPTTGLCLRWLDRLGGDGVLGGGEVLDFGCGSGILALAALKLGAVYAVGVDNDPQALLASRENALRNGVAERLEVYLPAEAPVRRYPVVVANILASTLVALAEWLAGCVAPGGRLALSGILRGEEKEVLRCYAVWLDVLGCEEEDGWIRIDGVRRC
>NZ_CP009885.1|WP_031336451.1|1756315_1756765_+|hypothetical-protein
MSAIVLAVALAAGQVKEPPAAVGMSESQAEQSAMLLAHCAGVWDWMGNIEKVAGKPSRVEQFHRKADEAETAAMWVLASQHYVATGNTASGAHWKSLTRPKREAGLAHMNALAEPGQEKASLAAIKGCQGMLQEQEKILHMMQKTKVKQ
>NZ_CP009885.1|WP_031336449.1|1756847_1757414_+|elongation-factor-P-like-protein-YeiP
MKASEMKKGSIVEYNNGTYQIRDIQRSSPQGRGGNVRFRFVMYSVPGGSKLEASFDADEMLTAVELLRREASFSYKDGEAFVFLDEEDYTLYTLEAEAIGDNAGYISEGLSGCYVQLIDASPVALQLPQHVVLEVVDTPPELKGGTATKRPKPAKLITGIEVMVPEYITTGERILVNTTTGAFGGRAS
>NZ_CP009885.1|WP_088578197.1|1757711_1759100_-|FAD-binding-oxidoreductase
MNDSRLTSLHQTLPMLRLKTEPADLQHYGRDWTRRFTPAPLAIALPATVQEVQAIVRWANDAHIAIVPSGGRTGLSGGAMATNGELVLSLERMNKMLRFDPMDRTMTVQAGMPLEAVQAAARQHGLLYPVDFAARGSCSIGGTIATNAGGIRVVRYGNTREWIAGLNVVTGTGELLTLNHALIKNSSGYDFRHLMIGSEGTLGIVVEATLRLTDPPPPTKVMLLALPTFDVLMQVFAAFRAQLQIEAFEFFTQRALPHVLAHGAQAPFEHLYPYYVVTEFPCADATQETTALTVFETCMEQGWVLDGVISQSDAQAAQLWRLRESITESIAPYTPYKNDIAVRIAAMPAFLEQAQALLSQAYPEFEVLWFGHIGDGNLHINVLKPHTVPQTDFIHTCEHVTALLADLLQLFRGSISAEHGIGLIKKPYLHSTRSPAEIALMRQLKRAFDPKWILNPGKVFDP
>NZ_CP009885.1|WP_088578198.1|1759302_1760544_+|phosphoglycerate-dehydrogenase
MPPTKTSFPKQDIRILLLEGVSHSGIETFRAAGYSQIKIHTTSLPEEALQAEIAEAHIIGIRSRTQLNAEVLGHAKRLMAIGCFCIGTNQVDLDTAELSGIPVFNAPYSNTRSVAELIIAEAILLLRGIPQKNAECHRGGWSKSAINSHEARGKVLGIVGYGHIGTQVSVLAEAMGMQVIFYDIESKLSLGNARPAASLDELLGIADVVTLHVPETAATKNMLGHAELARMKPGAHLINASRGTVVEIDALDAALVSGHLGGAAVDVFPSEPKGNSDPFISPLSRHDNVILTPHIGGSTLEAQDNIGIEVAAKLIRYSDNGSTLSAVNFPEVSLPEHMGSMRLLHIHRNVPGVLSHINELFSRHNVNIDGQFLRTDATLGYVVIDIGASQTQALALKEALTQVPGTLRTRLLY
>NZ_CP009885.1|WP_023906336.1|1760677_1762129_+|amino-acid-permease
MLKKHLFIVKPIEPTNHTGTGKGETQLKRSLTAGQLVMLGIGAVIGAGIFVLSGHAAAEYAGPAVVLSYILAGIACALAGLCYAEFAAMLPVSGSAYSYAYATLGEFTAWFIGWNLVLEYMFSASTVAVGWSGYLNSFLSSFGYGLPASLSSAPLDVVDGRLIYSGGLINLPAVAIVAAISGLCYVGITQSAFVNSITVAIKVSVIVLFIAFAARYVNPDNWVPFVPDNAAPGKYGMEGVIRGAAVVFFSYIGFDAVSTTAGEAKNPQRDMPIGILGSLAICTVIYIAFSGVLTGLMHYSQLDTPKPVATALETYPTLSWLKHVVEIGAIAGLSSTMLMMLMAQPRIFYAMSQDGLLPKLLSKVHPKFQTPHVGTLLVGACACTLAGLFPISLLGDLVSMGTLLAFATVCIGIVVLRRTRPDLPRPFRVPMYWVIAPAGAAACLYLFWQPFTEHWPLMVGWTVLGLVMYGLYGYHHSKLRHGG
>NZ_CP009885.1|WP_088578199.1|1762203_1763637_+|amino-acid-permease
MFKQLWATKLSQPSQDSAEGLSLQRVLGVWGLTALGIGAVIGGGIFVITGQAAANHAGPAIMLSFALAAICCTFCALAYAEFAAMVPVSGSAYTYTYATFGELAAWFIGWMLVLEYGVSAAAVAVSWSGYFLSLLQHLGIHLPAALVNAPLDGTLHATGAIANLPAASIVLLLTWLCYFGIRKSSKINIAMVALKSGLILLIIGVGWKYVNPDYWQPFIPPNQGPGKYGWDGVLHGASMVFFAYIGFEAVSVAAQESHRPQRDLPISMMSALAICTVLYIMMAAVMTGLVPYTQLGTDEPVVTAVAAHPQLGWLRVVVEIGALVGLSSVVLVMLIGQPRIFMIMAGDGLLPPIFSTIHSKHRTPHINTVITGLGIALLAAVFPLDVLGELTSMGTLIAFAAVCAGVLILRCTRPDLPRPFRMPAAWLFCSAGVLSCITLLSAMTRHNWMLMSVWTVLGFALYFGYGYRHSKLHREST

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Crispr_ID: NZ_CP009885_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009885_4

1750128-1750357

Orphan

Consensus_repeat	Method
CGGCGCTGAGGGTGCCGGCGGTGTTG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP009885_4

>merge|NZ_CP009885|4|1750128-1750357|CRISPRCasFinder
CGATGTCGAGGGTGCCGGCGGCGGTGATGCGGCCGTCGTGGTTGTTCAGGGTGTCTTGGAGGTGGAGGCGGGTGTCGCCGCCGCTGTGGAGGCGGCCGCCGGTGTTGGTGAGGGTGGTGCCGTCAATCTGGAGGGTGCCGCTGCTGCTGATGTGTCCGGCGGTGGTGTTGTCGAGGGTGGTGGTGTGCAGGTGGGTGGCGGTCTGGGAGTCGATGGTGCCGCCGCGGTTG

>NZ_CP009885|4|4|1750128-1750357|CRISPRCasFinder
CGATGTCGAGGGTGCCGGCGGCGGTG	ATGCGGCCGTCGTGGTTGTTCAGGGTGTCTTGGAGGTGGAGGCGGGTGTCGCCGC
CGCTGTGGAGGCGGCCGCCGGTGTTG	GTGAGGGTGGTGCCGTCAATCTGGAGGGTGCCGC
TGCTGCTGATGTGTCCGGCGGTGGTG	TTGTCGAGGGTGGTGGTGTGCAGGTGGGTGGCGGTCT
GGGAGTCGATGGTGCCGCCGCGGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009885.1\|WP_075584628.1\|1739255_1739480_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_031336449.1\|1756847_1757414_+\|elongation-factor-P-like-protein-YeiP	unknown	unknown	gnl\|CDD\|131233
NZ_CP009885.1\|WP_088371651.1\|1754341_1754734_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009885.1\|WP_088578198.1\|1759302_1760544_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP009885.1\|WP_088578195.1\|1753605_1754007_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009885.1\|WP_088578193.1\|1740461_1740788_-\|DUF769-domain-containing-protein	unknown	unknown	gnl\|CDD\|283284
NZ_CP009885.1\|WP_088578190.1\|1738128_1738737_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP009885.1\|WP_060871820.1\|1736751_1738005_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP009885.1\|WP_023906336.1\|1760677_1762129_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP009885.1\|WP_088578199.1\|1762203_1763637_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP009885.1\|WP_167701497.1\|1742776_1743097_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_031336451.1\|1756315_1756765_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009885.1\|WP_088578196.1\|1755294_1756215_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP009885.1\|WP_088578191.1\|1739507_1739837_-\|cytosolic-protein	unknown	unknown	gnl\|CDD\|372824
NZ_CP009885.1\|WP_088578197.1\|1757711_1759100_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP009885.1\|WP_088371649.1\|1754011_1754284_-\|hemagglutinin	unknown	unknown	unknown
NZ_CP009885.1\|WP_167701479.1\|1740962_1741355_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315
NZ_CP009885.1\|WP_046420352.1\|1742405_1742780_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188533
NZ_CP009885.1\|WP_088578601.1\|1741365_1741617_-\|hemagglutinin	unknown	unknown	unknown
NZ_CP009885.1\|WP_088578194.1\|1741896_1742283_-\|DUF596-domain-containing-protein	unknown	unknown	gnl\|CDD\|226315

Protein	Function_ID	Function_description	E-value
NZ_CP009885.1\|WP_088371651.1\|1754341_1754734_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	1.22424e-44
NZ_CP009885.1\|WP_088578198.1\|1759302_1760544_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP009885.1\|WP_088578195.1\|1753605_1754007_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	2.02879e-47
NZ_CP009885.1\|WP_088578193.1\|1740461_1740788_-\|DUF769-domain-containing-protein	gnl\|CDD\|283284	pfam05590, DUF769, Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.	4.79499e-08
NZ_CP009885.1\|WP_088578190.1\|1738128_1738737_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	6.40794e-22
NZ_CP009885.1\|WP_060871820.1\|1736751_1738005_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.1644e-56
NZ_CP009885.1\|WP_023906336.1\|1760677_1762129_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	8.37541e-130
NZ_CP009885.1\|WP_088578199.1\|1762203_1763637_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.24662e-122
NZ_CP009885.1\|WP_088578196.1\|1755294_1756215_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	4.27398e-135
NZ_CP009885.1\|WP_088578191.1\|1739507_1739837_-\|cytosolic-protein	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	8.97597e-25
NZ_CP009885.1\|WP_088578197.1\|1757711_1759100_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	5.55342e-126
NZ_CP009885.1\|WP_031336449.1\|1756847_1757414_+\|elongation-factor-P-like-protein-YeiP	gnl\|CDD\|131233	TIGR02178, Elongation_factor_P-like_protein, elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae. [Protein synthesis, Translation factors].	2.8397e-112
NZ_CP009885.1\|WP_167701479.1\|1740962_1741355_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	8.1919e-53
NZ_CP009885.1\|WP_046420352.1\|1742405_1742780_-\|hypothetical-protein	gnl\|CDD\|188533	TIGR04018, thioredoxin_reductase, putative bacillithiol system oxidoreductase, YpdA family. Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete. [Unknown function, Enzymes of unknown specificity].	0.00972606
NZ_CP009885.1\|WP_088578194.1\|1741896_1742283_-\|DUF596-domain-containing-protein	gnl\|CDD\|226315	COG3792, COG3792, Uncharacterized protein conserved in bacteria [Function unknown].	4.41045e-46

>NZ_CP009885.1|WP_167701497.1|1742776_1743097_-|hypothetical-protein
MIITGPTQPDAFNGTFNLLNTPDRLYNLLGPEKFWEQVNKPFLDGAIKRGDDIVLATKPEERFLNRLASDGSGRIERTGFGREYDYLIGKGYVYDASSGMMKKVKK
>NZ_CP009885.1|WP_046420352.1|1742405_1742780_-|hypothetical-protein
MIRSDYQSYLGKLKKYFRDFGVDYSVFSEEELGAKFYLYSDWMIELECEKFGSGVTVVIRHPEIGRKDGYAIWILMKAFESLKGKSYGDPSVENQIRFLVEEKELIFQYPSFYEAEYTRINDVH
>NZ_CP009885.1|WP_088578194.1|1741896_1742283_-|DUF596-domain-containing-protein
MLTQQQLDIIYEDLGRPLHIMWFKILREHGIPPQRSDPDSFEERKKDFLFLIGKLLDDGKLKLGDRKNEVIIEGTTAELVEKFRKCFPTSDEDLMKGTWLVTEECPFIAVWVHKGEGKDGEDYYEWAD
>NZ_CP009885.1|WP_088578601.1|1741365_1741617_-|hemagglutinin
MLESEAFSDQKIREHAQELAGDVPLKESRRKGVYRADLSDGTIVHLRSVSSSSNETKARWTIDIENNPSLREITNKRIEIKFR
>NZ_CP009885.1|WP_167701479.1|1740962_1741355_-|DUF596-domain-containing-protein
MLTQDMLTQDPDFFCEGEPLHFLWGYIRDAHGLSTGQVDHDSFEERKNDFFFVLGKLMDDGRLKLGNRKTELIMEGSTAELVEMFRSCFPASDEELIEGIWLVIEECPFVVVWVHKGAGENGEDYYDWCF
>NZ_CP009885.1|WP_088578193.1|1740461_1740788_-|DUF769-domain-containing-protein
MSGREFEPIPYEPNVPGGSNKAGNVKVFDSQVLTDKEIRQYAETWAQGAPFKRMSEGVYRADASDVTIVHLRSVSSSSNVTKARWTIDIENNSRVSEITNERVEIKFR
>NZ_CP009885.1|WP_088578191.1|1739507_1739837_-|cytosolic-protein
MTDAAGRVKSIEANLFLKEMDHNTYQQRCVGKCGEVGDEGGHLIASSLGRAGDRINLVSQASALNRVGWRKMENEFAKALQEGKSISVKIDLSYLTSIGVSPNQCAAVR
>NZ_CP009885.1|WP_075584628.1|1739255_1739480_+|hypothetical-protein
MKASYTLPEKTSHFQKMSLPALITLYSKHRFLKFDSLEQQNTHRDLLKVNAFLMGNIPTNVFRAAPVHQNKSPK
>NZ_CP009885.1|WP_088578190.1|1738128_1738737_-|rhomboid-family-intramembrane-serine-protease
MITLILIAMNAVVSWLSFNNSRLLDRLVLWPPAIDRDRQYDRLITYGFVHANISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVSILPSYIKNQKNPKYLSLGASGAVSAVLFAAVLLQPWALIVVLFIPAPAIFYAVFYVGYSIWIERRGDDGINHSAHLSGAAFGVVFMLCMEPQLLQVFLMQLSMPRFG
>NZ_CP009885.1|WP_060871820.1|1736751_1738005_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNTRWYFIALVFDLMGCSTTPHKSDAYPSPATSQIIGGKPTQTASICPPTSPYPPAQELPGTRDGYTKNGLYKPGIKDSVPDQLPDVSCIPEPFVTIEPRSAIGNQSPYVVLGKSYRVLDKAKGYVQRGVASYYGTKFHGRLTSNREVYDMYAFTAAHKTLPLPSFALITNLDNGESVVVRVNDRGPFHDDRLIDLSYAAAVKLGFTENGLANVEVRVLSEDDNPMILARHNKRIAPTTANPVATTMAPTATAQPTTPTNNIAASAKPDNPINHLQPLPTNAPLIATLTPMGSPTTIATRQPESPTITSTNASKATPPSEATKDTLTDSLHTPQVTATTALDSILVQVASFASHENASRALTQLTSAGIVGANLSAIVNSGRTFWRLRINAPNHDTALELIRRITHLGLGRPEIVGL
>NZ_CP009885.1|WP_088578195.1|1753605_1754007_-|DUF596-domain-containing-protein
MLTQEQIDFIYEDLIHAFDFLWFNIGHAYGMYAAQTDKDSFAERKNDFLFLLGKLLDEGKLKLAKKGKFLSGTTTELVEMFRKSFPDSDEAVDLGGAGIWFFTDECPAGAVWVFKEEGENEQGENNEDCYLWT
>NZ_CP009885.1|WP_088371649.1|1754011_1754284_-|hemagglutinin
MSDTAKAFESQELSDQQIKDYAQELAGNIPLKEIRPGIYVSKQEGKAILQLRSVFSSQELSEWRWVITFLNFPDLMAKVSNRKAIELIFR
>NZ_CP009885.1|WP_088371651.1|1754341_1754734_-|DUF596-domain-containing-protein
MLTEEQIDIIREGPLYFLEIIWFRIGQMYGLSPGQIDHDSFEERKNDLFFLLGKLLDEGQIKIGNHKGNFISGPTAALVEMFRNSFPDSDEEAQAAWFVTECPGGIVWVLKGQGEKGQDVYKWWLFTDEK
>NZ_CP009885.1|WP_088578196.1|1755294_1756215_+|50S-ribosomal-protein-L11-methyltransferase
MAFLEVSVQCQGRSQARYEEVLESFGALAVTLLDADADTVRERGVFEPGVGETVLWDVVVLNALFPVETDALGLLAGLEGAEPGLDWGGVRFRVVVDEDWERVWMDQFQPMRFGERTFIVPWNQAVPVEASGMDAAVVRLDPGLAFGSGTHPTTGLCLRWLDRLGGDGVLGGGEVLDFGCGSGILALAALKLGAVYAVGVDNDPQALLASRENALRNGVAERLEVYLPAEAPVRRYPVVVANILASTLVALAEWLAGCVAPGGRLALSGILRGEEKEVLRCYAVWLDVLGCEEEDGWIRIDGVRRC
>NZ_CP009885.1|WP_031336451.1|1756315_1756765_+|hypothetical-protein
MSAIVLAVALAAGQVKEPPAAVGMSESQAEQSAMLLAHCAGVWDWMGNIEKVAGKPSRVEQFHRKADEAETAAMWVLASQHYVATGNTASGAHWKSLTRPKREAGLAHMNALAEPGQEKASLAAIKGCQGMLQEQEKILHMMQKTKVKQ
>NZ_CP009885.1|WP_031336449.1|1756847_1757414_+|elongation-factor-P-like-protein-YeiP
MKASEMKKGSIVEYNNGTYQIRDIQRSSPQGRGGNVRFRFVMYSVPGGSKLEASFDADEMLTAVELLRREASFSYKDGEAFVFLDEEDYTLYTLEAEAIGDNAGYISEGLSGCYVQLIDASPVALQLPQHVVLEVVDTPPELKGGTATKRPKPAKLITGIEVMVPEYITTGERILVNTTTGAFGGRAS
>NZ_CP009885.1|WP_088578197.1|1757711_1759100_-|FAD-binding-oxidoreductase
MNDSRLTSLHQTLPMLRLKTEPADLQHYGRDWTRRFTPAPLAIALPATVQEVQAIVRWANDAHIAIVPSGGRTGLSGGAMATNGELVLSLERMNKMLRFDPMDRTMTVQAGMPLEAVQAAARQHGLLYPVDFAARGSCSIGGTIATNAGGIRVVRYGNTREWIAGLNVVTGTGELLTLNHALIKNSSGYDFRHLMIGSEGTLGIVVEATLRLTDPPPPTKVMLLALPTFDVLMQVFAAFRAQLQIEAFEFFTQRALPHVLAHGAQAPFEHLYPYYVVTEFPCADATQETTALTVFETCMEQGWVLDGVISQSDAQAAQLWRLRESITESIAPYTPYKNDIAVRIAAMPAFLEQAQALLSQAYPEFEVLWFGHIGDGNLHINVLKPHTVPQTDFIHTCEHVTALLADLLQLFRGSISAEHGIGLIKKPYLHSTRSPAEIALMRQLKRAFDPKWILNPGKVFDP
>NZ_CP009885.1|WP_088578198.1|1759302_1760544_+|phosphoglycerate-dehydrogenase
MPPTKTSFPKQDIRILLLEGVSHSGIETFRAAGYSQIKIHTTSLPEEALQAEIAEAHIIGIRSRTQLNAEVLGHAKRLMAIGCFCIGTNQVDLDTAELSGIPVFNAPYSNTRSVAELIIAEAILLLRGIPQKNAECHRGGWSKSAINSHEARGKVLGIVGYGHIGTQVSVLAEAMGMQVIFYDIESKLSLGNARPAASLDELLGIADVVTLHVPETAATKNMLGHAELARMKPGAHLINASRGTVVEIDALDAALVSGHLGGAAVDVFPSEPKGNSDPFISPLSRHDNVILTPHIGGSTLEAQDNIGIEVAAKLIRYSDNGSTLSAVNFPEVSLPEHMGSMRLLHIHRNVPGVLSHINELFSRHNVNIDGQFLRTDATLGYVVIDIGASQTQALALKEALTQVPGTLRTRLLY
>NZ_CP009885.1|WP_023906336.1|1760677_1762129_+|amino-acid-permease
MLKKHLFIVKPIEPTNHTGTGKGETQLKRSLTAGQLVMLGIGAVIGAGIFVLSGHAAAEYAGPAVVLSYILAGIACALAGLCYAEFAAMLPVSGSAYSYAYATLGEFTAWFIGWNLVLEYMFSASTVAVGWSGYLNSFLSSFGYGLPASLSSAPLDVVDGRLIYSGGLINLPAVAIVAAISGLCYVGITQSAFVNSITVAIKVSVIVLFIAFAARYVNPDNWVPFVPDNAAPGKYGMEGVIRGAAVVFFSYIGFDAVSTTAGEAKNPQRDMPIGILGSLAICTVIYIAFSGVLTGLMHYSQLDTPKPVATALETYPTLSWLKHVVEIGAIAGLSSTMLMMLMAQPRIFYAMSQDGLLPKLLSKVHPKFQTPHVGTLLVGACACTLAGLFPISLLGDLVSMGTLLAFATVCIGIVVLRRTRPDLPRPFRVPMYWVIAPAGAAACLYLFWQPFTEHWPLMVGWTVLGLVMYGLYGYHHSKLRHGG
>NZ_CP009885.1|WP_088578199.1|1762203_1763637_+|amino-acid-permease
MFKQLWATKLSQPSQDSAEGLSLQRVLGVWGLTALGIGAVIGGGIFVITGQAAANHAGPAIMLSFALAAICCTFCALAYAEFAAMVPVSGSAYTYTYATFGELAAWFIGWMLVLEYGVSAAAVAVSWSGYFLSLLQHLGIHLPAALVNAPLDGTLHATGAIANLPAASIVLLLTWLCYFGIRKSSKINIAMVALKSGLILLIIGVGWKYVNPDYWQPFIPPNQGPGKYGWDGVLHGASMVFFAYIGFEAVSVAAQESHRPQRDLPISMMSALAICTVLYIMMAAVMTGLVPYTQLGTDEPVVTAVAAHPQLGWLRVVVEIGALVGLSSVVLVMLIGQPRIFMIMAGDGLLPPIFSTIHSKHRTPHINTVITGLGIALLAAVFPLDVLGELTSMGTLIAFAAVCAGVLILRCTRPDLPRPFRMPAAWLFCSAGVLSCITLLSAMTRHNWMLMSVWTVLGFALYFGYGYRHSKLHREST

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP009885_2	2.1\|1749686\|34\|NZ_CP009885\|CRISPRCasFinder	1749686-1749719	34	NZ_CP009885.1	2339755-2339788	1.0
NZ_CP009885_3	3.1\|1749860\|37\|NZ_CP009885\|CRISPRCasFinder	1749860-1749896	37	NZ_CP009885.1	2339929-2339965	1.0
NZ_CP009885_4	4.3\|1750295\|37\|NZ_CP009885\|CRISPRCasFinder	1750295-1750331	37	NZ_CP009885.1	2340010-2340046	1.0

1. spacer 2.1|1749686|34|NZ_CP009885|CRISPRCasFinder matches to position: 2339755-2339788, mismatch: 0, identity: 1.0

aggtcgccagcggtggtgagggtgagcaggccgg	CRISPR spacer
aggtcgccagcggtggtgagggtgagcaggccgg	Protospacer
**********************************

2. spacer 3.1|1749860|37|NZ_CP009885|CRISPRCasFinder matches to position: 2339929-2339965, mismatch: 0, identity: 1.0

ttgctcaggtggtctgcagtgaggtccaaggtgccgc	CRISPR spacer
ttgctcaggtggtctgcagtgaggtccaaggtgccgc	Protospacer
*************************************

3. spacer 4.3|1750295|37|NZ_CP009885|CRISPRCasFinder matches to position: 2340010-2340046, mismatch: 0, identity: 1.0

ttgtcgagggtggtggtgtgcaggtgggtggcggtct	CRISPR spacer
ttgtcgagggtggtggtgtgcaggtgggtggcggtct	Protospacer
*************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009885_2	2.1\|1749686\|34\|NZ_CP009885\|CRISPRCasFinder	1749686-1749719	34	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	366263-366296	8	0.765
NZ_CP009885_2	2.1\|1749686\|34\|NZ_CP009885\|CRISPRCasFinder	1749686-1749719	34	NZ_CP010991	Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence	83966-83999	9	0.735
NZ_CP009885_2	2.1\|1749686\|34\|NZ_CP009885\|CRISPRCasFinder	1749686-1749719	34	NC_015314	Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence	180060-180093	9	0.735
NZ_CP009885_2	2.1\|1749686\|34\|NZ_CP009885\|CRISPRCasFinder	1749686-1749719	34	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1455583-1455616	9	0.735
NZ_CP009885_2	2.1\|1749686\|34\|NZ_CP009885\|CRISPRCasFinder	1749686-1749719	34	NZ_CP023976	Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.1, complete sequence	155628-155661	10	0.706

1. spacer 2.1|1749686|34|NZ_CP009885|CRISPRCasFinder matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

aggtcgccagcg-----gtggtgagggtgagcaggccgg	CRISPR spacer
-----gccggcgtcgccgtggtgagggtgaccaggccga	Protospacer
     ***.***     ************* *******.

2. spacer 2.1|1749686|34|NZ_CP009885|CRISPRCasFinder matches to NZ_CP010991 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence) position: , mismatch: 9, identity: 0.735

aggtcgccagcggtggtgagggtgagcaggccgg	CRISPR spacer
cacccgccggcgatggtgagggtgagcagcctcg	Protospacer
 . .****.***.**************** *. *

3. spacer 2.1|1749686|34|NZ_CP009885|CRISPRCasFinder matches to NC_015314 (Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence) position: , mismatch: 9, identity: 0.735

aggtcgccagcggtggtgagggtgagcaggccgg	CRISPR spacer
acctgcgcgtcggtggtgacggtgaccaggccgg	Protospacer
*  *   *. ********* ***** ********

4. spacer 2.1|1749686|34|NZ_CP009885|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 9, identity: 0.735

----aggtcgccagcggtggtgagggtgagcaggccgg	CRISPR spacer
tccgagg----ggacggaggtgagggggagcaggccgg	Protospacer
    ***     ..*** ******** ***********

5. spacer 2.1|1749686|34|NZ_CP009885|CRISPRCasFinder matches to NZ_CP023976 (Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.1, complete sequence) position: , mismatch: 10, identity: 0.706

aggtcgccagcggtggtgagggtgagcaggccgg	CRISPR spacer
caggtacgggcgggggcgagggtgagcaggccgc	Protospacer
 .* ..* .**** **.****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

512605 : 521862

Pseudomonas_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088577706.1\|512605_513793_+	hypothetical protein	J9STL4	Pseudomonas_phage	7.0e-43	32.7
WP_088577707.1\|513782_515225_+	DUF2163 domain-containing protein	NA	NA	NA	NA
WP_060872214.1\|515215_515644_+	hypothetical protein	NA	NA	NA	NA
WP_010894569.1\|515640_515877_+	hypothetical protein	A0A0A1IV01	Pseudomonas_phage	1.6e-12	50.7
WP_088577708.1\|515866_518692_+	hypothetical protein	Q5ZQV9	Pseudomonas_phage	9.4e-70	36.0
WP_088577709.1\|518684_519197_+	hypothetical protein	G8CLC0	Synechococcus_phage	1.7e-09	31.4
WP_088371798.1\|519795_520800_+	peptidase	NA	NA	NA	NA
WP_042462790.1\|521282_521624_-	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.1e-17	49.1
WP_082355533.1\|521607_521862_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	5.3e-17	54.8

DBSCAN-SWA_2

820488 : 832314

Xylella_phage(90.91%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088577809.1\|820488_821190_-	site-specific DNA-methyltransferase	A0A097EWK8	Mycobacterium_phage	4.5e-58	52.2
WP_088577810.1\|821571_822984_-	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	1.5e-225	94.7
WP_088577811.1\|823068_823353_+	DUF1640 domain-containing protein	NA	NA	NA	NA
WP_088577812.1\|823354_823633_-	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	5.6e-44	94.5
WP_088577813.1\|823629_825810_-	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	91.3
WP_088577814.1\|825811_827050_-	hypothetical protein	C8CLG1	Xylella_phage	4.4e-181	83.9
WP_088577815.1\|827040_827607_-	DUF2815 family protein	C8CLG2	Xylella_phage	2.5e-99	94.1
WP_157293237.1\|828880_829327_-	hypothetical protein	C8CLG4	Xylella_phage	6.3e-29	55.7
WP_088577816.1\|829381_829576_-	hypothetical protein	C8CLG5	Xylella_phage	2.3e-20	84.1
WP_088577817.1\|829607_829799_-	hypothetical protein	C8CLG6	Xylella_phage	8.3e-15	70.3
WP_088577818.1\|829822_830014_-	hypothetical protein	NA	NA	NA	NA
WP_088578559.1\|830313_830796_+	hypothetical protein	NA	NA	NA	NA
WP_088577819.1\|830855_831326_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_088578560.1\|831322_831748_-	hypothetical protein	C8CLG9	Xylella_phage	1.1e-33	62.8
WP_088577820.1\|831753_832314_-	hypothetical protein	C8CLG9	Xylella_phage	2.6e-08	35.7

DBSCAN-SWA_3

836020 : 912198

Escherichia_phage(24.24%)

plate,portal,tRNA,terminase,protease,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088577825.1\|836020_836356_+	hypothetical protein	C8CLH4	Xylella_phage	7.0e-25	67.0
WP_088577826.1\|836352_837180_+	hypothetical protein	A4PE61	Ralstonia_virus	8.4e-19	43.7
WP_088577827.1\|837315_839850_+	DNA primase	C8CLH6	Xylella_phage	0.0e+00	73.3
WP_088578562.1\|840592_841210_+	hypothetical protein	V5YTF6	Pseudomonas_phage	1.1e-26	48.8
WP_088577828.1\|841176_841665_+	lysozyme	A0A2I7RLY1	Vibrio_phage	7.6e-28	53.1
WP_088577829.1\|841684_841996_+	hypothetical protein	A0A172PZR6	Pseudomonas_phage	7.0e-19	44.0
WP_088577830.1\|841985_842447_+	hypothetical protein	NA	NA	NA	NA
WP_088577831.1\|842448_842673_+	hypothetical protein	NA	NA	NA	NA
WP_088577832.1\|842845_843385_+	DNA-packaging protein	A0A193GYK5	Enterobacter_phage	6.2e-47	61.3
WP_088577833.1\|843377_845330_+\|terminase	phage terminase large subunit family protein	D5LH04	Escherichia_phage	9.8e-252	67.8
WP_088577834.1\|845333_845885_+	hypothetical protein	V5YTG8	Pseudomonas_phage	6.3e-39	50.0
WP_088577835.1\|845881_847483_+\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	3.2e-131	51.6
WP_088577836.1\|847466_849347_+\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	8.8e-165	48.6
WP_060872391.1\|849364_849625_+	hypothetical protein	NA	NA	NA	NA
WP_088577837.1\|849624_849948_+	hypothetical protein	NA	NA	NA	NA
WP_088577838.1\|849944_850466_+	hypothetical protein	D5LGZ7	Escherichia_phage	2.1e-12	33.9
WP_088577839.1\|850441_850984_+	hypothetical protein	D5LGZ6	Escherichia_phage	3.4e-37	43.4
WP_088577840.1\|850980_851568_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_010893244.1\|851572_851848_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_042463596.1\|851858_852140_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	1.2e-14	46.2
WP_088577841.1\|852196_852496_-	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.2e-15	49.4
WP_088577842.1\|852499_852778_-	excinuclease ABC subunit A	NA	NA	NA	NA
WP_042462908.1\|852868_853207_+\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	2.3e-31	59.5
WP_088577843.1\|853206_854100_+\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	1.5e-69	46.4
WP_088577844.1\|854092_854650_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.5e-51	54.4
WP_088577845.1\|854657_856250_+	hypothetical protein	V9IQX0	Stenotrophomonas_phage	2.7e-82	36.2
WP_088577846.1\|856314_857493_+\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	9.8e-138	56.1
WP_088577847.1\|857492_858002_+\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	1.5e-47	52.7
WP_088577848.1\|858004_858292_+\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	9.0e-13	43.4
WP_088577849.1\|858418_860638_+\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	1.4e-116	49.5
WP_088577850.1\|860634_861117_+\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	1.7e-27	46.0
WP_088577851.1\|861113_861332_+\|tail	phage tail protein	NA	NA	NA	NA
WP_088577852.1\|861322_862405_+	phage late control D family protein	A0A088FRU7	Escherichia_phage	4.8e-91	45.7
WP_010893891.1\|862700_863042_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
WP_088577853.1\|863041_863650_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
WP_088577854.1\|863655_865653_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_023907802.1\|865646_866606_-	ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_023907801.1\|867069_868068_-	octaprenyl-diphosphate synthase	NA	NA	NA	NA
WP_004083791.1\|868316_868811_+	single-stranded DNA-binding protein	A0A0U1VYM4	Pseudomonas_phage	6.1e-33	62.6
WP_010893900.1\|870424_871336_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_010893902.1\|873021_873549_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_031337907.1\|875102_876830_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_004089222.1\|876890_877160_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_010893907.1\|877152_877545_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_046419455.1\|877915_878788_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	7.0e-08	33.0
WP_004083779.1\|878784_879735_-	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_004083778.1\|880000_880318_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_088577855.1\|880408_881797_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_023906744.1\|881838_882561_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.1e-26	32.2
WP_023906743.1\|882560_883091_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_088577856.1\|883068_883638_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_004089213.1\|883634_884183_-	HAD family hydrolase	NA	NA	NA	NA
WP_010893914.1\|884200_885202_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	3.4e-38	35.7
WP_004089208.1\|885263_885491_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_088577857.1\|885560_886838_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_010893917.1\|886834_887137_+	EF-hand domain-containing protein	NA	NA	NA	NA
WP_031336788.1\|887515_887845_-	hypothetical protein	NA	NA	NA	NA
WP_088577858.1\|888118_889003_+	acetyltransferase	NA	NA	NA	NA
WP_088577859.1\|889364_889604_-	hypothetical protein	NA	NA	NA	NA
WP_023906737.1\|893768_894557_-	DsbC family protein	NA	NA	NA	NA
WP_088577860.1\|894688_895663_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	5.0e-31	30.2
WP_088577861.1\|895910_896804_-	ion transporter	NA	NA	NA	NA
WP_088577862.1\|896871_898107_+	acetylornithine transaminase	A0A1V0SKB7	Klosneuvirus	4.2e-22	24.8
WP_023907787.1\|898322_899687_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_088577863.1\|899961_900573_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_088577864.1\|901553_902489_-	peptidase	NA	NA	NA	NA
WP_010893937.1\|903261_903909_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
WP_088577865.1\|904016_904799_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
WP_023906730.1\|904814_905582_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_010893940.1\|905690_906305_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_088577866.1\|906301_907441_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_010893942.1\|907437_907896_-	NUDIX hydrolase	NA	NA	NA	NA
WP_010893943.1\|908069_908390_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.2e-11	42.0
WP_010893944.1\|908522_910799_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.4e-169	44.7
WP_010893946.1\|911131_911350_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_010893947.1\|911466_912198_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA

DBSCAN-SWA_4

1039972 : 1050767

Pseudomonas_phage(33.33%)

terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088577906.1\|1039972_1041028_+	DNA primase	A0A1S5RF89	Helicobacter_phage	5.7e-12	41.8
WP_088577907.1\|1041024_1042530_+	virulence factor	A0A2D1GN57	Marinobacter_phage	1.5e-58	32.8
WP_088577908.1\|1042952_1043588_+	hypothetical protein	A0A2I7S8M0	Vibrio_phage	6.9e-05	40.7
WP_088577909.1\|1043584_1045675_+\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	1.4e-73	30.7
WP_157293239.1\|1045613_1045964_+	hypothetical protein	NA	NA	NA	NA
WP_010893037.1\|1045960_1046197_+	hypothetical protein	NA	NA	NA	NA
WP_088577910.1\|1046193_1046721_+\|portal	phage portal protein	NA	NA	NA	NA
WP_157293240.1\|1046873_1047164_+	hypothetical protein	NA	NA	NA	NA
WP_052262867.1\|1047290_1047719_+	hypothetical protein	NA	NA	NA	NA
WP_010894569.1\|1047715_1047952_+	hypothetical protein	A0A0A1IV01	Pseudomonas_phage	1.6e-12	50.7
WP_088577912.1\|1047941_1050767_+	hypothetical protein	J9RWA5	Pseudomonas_phage	4.7e-69	35.5

DBSCAN-SWA_5

1381972 : 1391338

Aggregatibacter_phage(25.0%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088578038.1\|1381972_1383367_+	hypothetical protein	D0UII2	Aggregatibacter_phage	3.9e-16	33.0
WP_023907681.1\|1383378_1383645_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5SB46	Streptococcus_phage	1.3e-13	42.7
WP_031336679.1\|1383628_1383856_-	CopG family transcriptional regulator	NA	NA	NA	NA
WP_088578039.1\|1383966_1384737_+	hypothetical protein	Q7Y5T0	Haemophilus_phage	1.6e-27	33.2
WP_088578040.1\|1384736_1385030_+	hypothetical protein	NA	NA	NA	NA
WP_023906521.1\|1385026_1385857_+	hypothetical protein	D0UIH8	Aggregatibacter_phage	4.0e-77	51.8
WP_088578041.1\|1385853_1386495_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.6e-33	38.4
WP_088578042.1\|1386491_1386845_+	hypothetical protein	Q7Y5S5	Haemophilus_phage	6.9e-23	47.0
WP_088578043.1\|1386937_1388083_+\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	4.8e-97	48.9
WP_088578044.1\|1388079_1388640_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.4e-06	26.1
WP_088578045.1\|1388643_1389807_+\|tail	tail fiber protein	A0A222ZFV4	Arthrobacter_phage	7.2e-08	50.0
WP_023906515.1\|1389807_1390035_-	hypothetical protein	C8CLJ6	Xylella_phage	1.7e-14	62.9
WP_088578046.1\|1390034_1390601_-	SocA family protein	I6R0L8	Salmonella_phage	7.5e-19	34.4
WP_088578047.1\|1391005_1391338_+	DNA-binding transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	2.4e-17	40.7

DBSCAN-SWA_6

1515894 : 1522976

Xylella_phage(50.0%)

integrase

attL 1511955:1511969|attR 1532276:1532290

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1511955:1511969	attL	NA	NA	NA	NA
WP_088578139.1\|1515894_1516296_+	hypothetical protein	C8CLG7	Xylella_phage	4.1e-56	81.2
WP_069107101.1\|1516292_1516484_+	hypothetical protein	NA	NA	NA	NA
WP_088578140.1\|1516507_1516699_+	hypothetical protein	C8CLG6	Xylella_phage	2.0e-16	71.9
WP_088578141.1\|1516719_1517646_+	phage recombination protein Bet	U6C6J0	Ralstonia_phage	1.3e-57	48.2
WP_088578142.1\|1517642_1519286_+	hypothetical protein	U6C712	Ralstonia_phage	5.6e-99	38.5
WP_162009303.1\|1519318_1520083_+	hypothetical protein	NA	NA	NA	NA
WP_088578596.1\|1520373_1521174_+	hypothetical protein	Q7Y5V4	Haemophilus_phage	1.2e-35	63.8
WP_088578143.1\|1521243_1521690_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	2.5e-33	52.9
WP_088578144.1\|1521708_1521957_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	1.0e-33	81.7
WP_088578145.1\|1521956_1522976_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.2e-168	88.2
1532276:1532290	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1568774 : 1598757

Haemophilus_phage(28.57%)

tail,capsid,plate,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088578042.1\|1568774_1569128_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	6.9e-23	47.0
WP_060870179.1\|1570042_1571059_+	peptidase M4 family protein	NA	NA	NA	NA
WP_081089730.1\|1571066_1571420_+	hypothetical protein	NA	NA	NA	NA
WP_088372204.1\|1571443_1571716_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_167701495.1\|1571762_1572254_+	SocA family protein	I6R0L8	Salmonella_phage	5.1e-16	34.8
WP_023906515.1\|1572253_1572481_+	hypothetical protein	C8CLJ6	Xylella_phage	1.7e-14	62.9
WP_088578045.1\|1572481_1573645_-\|tail	tail fiber protein	A0A222ZFV4	Arthrobacter_phage	7.2e-08	50.0
WP_088578044.1\|1573648_1574209_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.4e-06	26.1
WP_088578043.1\|1574205_1575351_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	4.8e-97	48.9
WP_088578155.1\|1575443_1575797_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	9.1e-23	47.0
WP_088578156.1\|1575793_1576435_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	3.5e-33	38.4
WP_023906521.1\|1576431_1577262_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	4.0e-77	51.8
WP_088578040.1\|1577258_1577552_-	hypothetical protein	NA	NA	NA	NA
WP_088578039.1\|1577551_1578322_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	1.6e-27	33.2
WP_031336679.1\|1578432_1578660_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_023907681.1\|1578643_1578910_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5SB46	Streptococcus_phage	1.3e-13	42.7
WP_088578157.1\|1578921_1580811_-	hypothetical protein	A0A2I7RBK9	Vibrio_phage	6.8e-32	34.9
WP_088578158.1\|1580958_1581381_-	hypothetical protein	NA	NA	NA	NA
WP_088578159.1\|1581377_1581815_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	1.4e-44	63.1
WP_088578160.1\|1581824_1583321_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	4.7e-121	47.4
WP_167701496.1\|1583321_1583825_-	hypothetical protein	NA	NA	NA	NA
WP_088578162.1\|1583778_1584147_-	hypothetical protein	Q776V7	Haemophilus_phage	3.7e-19	38.5
WP_088578163.1\|1584133_1584613_-	hypothetical protein	M4SN98	Psychrobacter_phage	1.7e-08	28.0
WP_023906532.1\|1584609_1584984_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	9.0e-13	39.1
WP_023906533.1\|1584986_1585286_-	hypothetical protein	NA	NA	NA	NA
WP_088578164.1\|1585349_1586333_-	DUF2184 domain-containing protein	A0A2I7S4F8	Vibrio_phage	3.1e-44	35.4
WP_088578165.1\|1586342_1586825_-	hypothetical protein	NA	NA	NA	NA
WP_088578166.1\|1586852_1588043_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	2.8e-39	41.3
WP_088578167.1\|1588042_1588888_-\|capsid	minor capsid protein	Q7Y5U5	Haemophilus_phage	5.9e-28	32.7
WP_088578597.1\|1588799_1590146_-	DUF1073 domain-containing protein	H9C106	Vibrio_phage	6.7e-66	38.6
WP_088578168.1\|1590226_1591777_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	1.9e-112	44.9
WP_023906540.1\|1591727_1592126_-	hypothetical protein	NA	NA	NA	NA
WP_088578169.1\|1592412_1592874_-	hypothetical protein	NA	NA	NA	NA
WP_010894063.1\|1592863_1593193_-	hypothetical protein	NA	NA	NA	NA
WP_088578170.1\|1593185_1593686_-	lysozyme	A0A2I7RLY1	Vibrio_phage	4.3e-26	49.7
WP_088578171.1\|1593867_1594149_+	excinuclease ABC subunit A	NA	NA	NA	NA
WP_004089519.1\|1594158_1594458_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.1e-13	45.9
WP_088578172.1\|1594540_1595239_-	hypothetical protein	C8CLH7	Xylella_phage	1.6e-103	83.9
WP_031337812.1\|1595258_1595621_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	2.5e-12	43.9
WP_088572695.1\|1595668_1596358_-	hypothetical protein	NA	NA	NA	NA
WP_088578129.1\|1596338_1597190_-	YdaU family protein	A0A142K7R2	Mycobacterium_phage	4.7e-17	63.4
WP_023907990.1\|1597233_1597524_-	hypothetical protein	NA	NA	NA	NA
WP_088578130.1\|1597644_1598757_-	hypothetical protein	C8CLG1	Xylella_phage	3.7e-110	56.7

DBSCAN-SWA_8

1605272 : 1612354

Xylella_phage(50.0%)

integrase

attL 1601333:1601347|attR 1621654:1621668

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1601333:1601347	attL	NA	NA	NA	NA
WP_088578139.1\|1605272_1605674_+	hypothetical protein	C8CLG7	Xylella_phage	4.1e-56	81.2
WP_069107101.1\|1605670_1605862_+	hypothetical protein	NA	NA	NA	NA
WP_088578140.1\|1605885_1606077_+	hypothetical protein	C8CLG6	Xylella_phage	2.0e-16	71.9
WP_088578141.1\|1606097_1607024_+	phage recombination protein Bet	U6C6J0	Ralstonia_phage	1.3e-57	48.2
WP_088578142.1\|1607020_1608664_+	hypothetical protein	U6C712	Ralstonia_phage	5.6e-99	38.5
WP_162009303.1\|1608696_1609461_+	hypothetical protein	NA	NA	NA	NA
WP_088578596.1\|1609751_1610552_+	hypothetical protein	Q7Y5V4	Haemophilus_phage	1.2e-35	63.8
WP_088578143.1\|1610621_1611068_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	2.5e-33	52.9
WP_088578144.1\|1611086_1611335_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	1.0e-33	81.7
WP_088578145.1\|1611334_1612354_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.2e-168	88.2
1621654:1621668	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1658152 : 1688504

Haemophilus_phage(27.59%)

tail,capsid,plate,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088578042.1\|1658152_1658506_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	6.9e-23	47.0
WP_060870179.1\|1659420_1660437_+	peptidase M4 family protein	NA	NA	NA	NA
WP_081089730.1\|1660444_1660798_+	hypothetical protein	NA	NA	NA	NA
WP_088372204.1\|1660821_1661094_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_167701495.1\|1661140_1661632_+	SocA family protein	I6R0L8	Salmonella_phage	5.1e-16	34.8
WP_023906515.1\|1661631_1661859_+	hypothetical protein	C8CLJ6	Xylella_phage	1.7e-14	62.9
WP_088578045.1\|1661859_1663023_-\|tail	tail fiber protein	A0A222ZFV4	Arthrobacter_phage	7.2e-08	50.0
WP_088578044.1\|1663026_1663587_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.4e-06	26.1
WP_088578043.1\|1663583_1664729_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	4.8e-97	48.9
WP_088578155.1\|1664821_1665175_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	9.1e-23	47.0
WP_088578156.1\|1665171_1665813_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	3.5e-33	38.4
WP_023906521.1\|1665809_1666640_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	4.0e-77	51.8
WP_088578040.1\|1666636_1666930_-	hypothetical protein	NA	NA	NA	NA
WP_088578039.1\|1666929_1667700_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	1.6e-27	33.2
WP_031336679.1\|1667810_1668038_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_023907681.1\|1668021_1668288_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5SB46	Streptococcus_phage	1.3e-13	42.7
WP_088578157.1\|1668299_1670189_-	hypothetical protein	A0A2I7RBK9	Vibrio_phage	6.8e-32	34.9
WP_088578158.1\|1670336_1670759_-	hypothetical protein	NA	NA	NA	NA
WP_088578159.1\|1670755_1671193_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	1.4e-44	63.1
WP_088578160.1\|1671202_1672699_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	4.7e-121	47.4
WP_167701496.1\|1672699_1673203_-	hypothetical protein	NA	NA	NA	NA
WP_088578162.1\|1673156_1673525_-	hypothetical protein	Q776V7	Haemophilus_phage	3.7e-19	38.5
WP_088578163.1\|1673511_1673991_-	hypothetical protein	M4SN98	Psychrobacter_phage	1.7e-08	28.0
WP_023906532.1\|1673987_1674362_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	9.0e-13	39.1
WP_023906533.1\|1674364_1674664_-	hypothetical protein	NA	NA	NA	NA
WP_088578164.1\|1674727_1675711_-	DUF2184 domain-containing protein	A0A2I7S4F8	Vibrio_phage	3.1e-44	35.4
WP_088578165.1\|1675720_1676203_-	hypothetical protein	NA	NA	NA	NA
WP_088578166.1\|1676230_1677421_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	2.8e-39	41.3
WP_088578173.1\|1677420_1678266_-\|capsid	minor capsid protein	Q7Y5U5	Haemophilus_phage	5.9e-28	32.7
WP_088578174.1\|1678334_1678673_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_023907694.1\|1678669_1678951_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	8.8e-13	45.2
WP_088578598.1\|1678999_1680304_-	DUF1073 domain-containing protein	H9C106	Vibrio_phage	2.6e-67	37.1
WP_088578168.1\|1680384_1681935_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	1.9e-112	44.9
WP_023906540.1\|1681885_1682284_-	hypothetical protein	NA	NA	NA	NA
WP_088578169.1\|1682570_1683032_-	hypothetical protein	NA	NA	NA	NA
WP_088578175.1\|1683021_1683351_-	hypothetical protein	NA	NA	NA	NA
WP_088578176.1\|1683343_1683844_-	lysozyme	A0A2I7S753	Vibrio_phage	5.6e-26	50.3
WP_004085696.1\|1684046_1684385_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.0e-07	54.9
WP_010894061.1\|1684371_1684638_-	hypothetical protein	K4NX81	Burkholderia_phage	8.1e-08	40.7
WP_088578177.1\|1684825_1685524_-	hypothetical protein	C8CLH7	Xylella_phage	2.7e-103	83.0
WP_088578599.1\|1685652_1686063_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	1.2e-10	45.7
WP_088578178.1\|1686110_1686800_-	hypothetical protein	NA	NA	NA	NA
WP_031336702.1\|1687997_1688237_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_060872184.1\|1688255_1688504_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	1.4e-33	81.7

DBSCAN-SWA_10

1837557 : 1850449

uncultured_Caudovirales_phage(40.0%)

integrase,tRNA

attL 1843659:1843673|attR 1850460:1850474

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023907479.1\|1837557_1838490_-	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	4.9e-15	36.6
WP_010894730.1\|1838489_1839284_-	ParA family protein	A0A0K2FLP4	Brevibacillus_phage	8.0e-19	29.7
WP_046420578.1\|1839581_1840535_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_010894734.1\|1841340_1842621_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.5e-95	51.2
1843659:1843673	attL	NA	NA	NA	NA
WP_088578218.1\|1843697_1844759_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	4.9e-96	53.3
WP_010894737.1\|1844770_1845067_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	4.5e-07	48.1
WP_088578606.1\|1845063_1845378_-	hypothetical protein	C8CLF7	Xylella_phage	2.8e-31	93.4
WP_088578219.1\|1846997_1847276_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	8.1e-43	93.4
WP_088578220.1\|1847277_1847661_-	DUF1640 domain-containing protein	NA	NA	NA	NA
WP_088578221.1\|1847745_1849143_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	1.3e-258	94.3
WP_088578222.1\|1849139_1849376_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	1.1e-08	52.6
WP_088578223.1\|1849387_1850449_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.9e-103	58.6
1850460:1850474	attR	NA	NA	NA	NA

DBSCAN-SWA_11

2456362 : 2542389

Xylella_phage(37.5%)

plate,portal,integrase,tRNA,terminase,tail,capsid

attL 2489021:2489037|attR 2545626:2545642

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023908085.1\|2456362_2457097_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_031337090.1\|2457093_2457888_-	thiazole synthase	NA	NA	NA	NA
WP_031337091.1\|2457936_2458137_-	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_010893304.1\|2458278_2460072_+	autotransporter domain-containing esterase	NA	NA	NA	NA
WP_023908086.1\|2460464_2460713_-	hypothetical protein	NA	NA	NA	NA
WP_157293268.1\|2460992_2461535_-	hypothetical protein	NA	NA	NA	NA
WP_088578403.1\|2461525_2463619_+	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	5.5e-91	37.0
WP_031337093.1\|2463979_2464414_-	phosphotransferase	NA	NA	NA	NA
WP_023906986.1\|2464391_2466758_-	MMPL family transporter	NA	NA	NA	NA
WP_080507193.1\|2466935_2467583_-	fatty acyl CoA synthetase	NA	NA	NA	NA
WP_023908089.1\|2468487_2468775_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_088578404.1\|2469017_2469758_-	ketosynthase	NA	NA	NA	NA
WP_010893294.1\|2469732_2470002_-	acyl carrier protein	NA	NA	NA	NA
WP_088578405.1\|2470365_2471346_+	pteridine-dependent deoxygenase	NA	NA	NA	NA
WP_088578406.1\|2471771_2473067_+	TIGR01244 family phosphatase	NA	NA	NA	NA
WP_010893290.1\|2473060_2473405_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010893289.1\|2473401_2473809_+	YeeE/YedE family protein	NA	NA	NA	NA
WP_088578407.1\|2473805_2474246_+	YeeE/YedE family protein	NA	NA	NA	NA
WP_088578408.1\|2474242_2475028_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_010893285.1\|2475600_2476176_+	dCTP deaminase	S5VM63	Pseudomonas_phage	2.8e-69	67.7
WP_023906990.1\|2476444_2477407_-	DUF1684 domain-containing protein	NA	NA	NA	NA
WP_088578409.1\|2477406_2479266_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	5.2e-85	35.6
WP_088372124.1\|2479401_2481021_-	N-acetylmuramoyl-L-alanine amidase	Q0H257	Geobacillus_phage	1.0e-12	27.6
WP_046418493.1\|2481079_2481568_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_088578410.1\|2481564_2483055_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_088578411.1\|2483505_2484840_+	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	1.4e-36	34.5
WP_088578412.1\|2484905_2485763_-	virulence factor family protein	NA	NA	NA	NA
WP_088578624.1\|2485889_2487692_-	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	6.3e-27	35.2
WP_023908098.1\|2487814_2488903_+	ribonuclease D	NA	NA	NA	NA
2489021:2489037	attL	NA	NA	NA	NA
WP_010893272.1\|2489181_2489586_+	H-NS histone family protein	NA	NA	NA	NA
WP_010893271.1\|2490371_2491427_-	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA
WP_088578413.1\|2491574_2492174_+	hypothetical protein	NA	NA	NA	NA
WP_023908099.1\|2492410_2492554_+	hypothetical protein	NA	NA	NA	NA
WP_031337099.1\|2493121_2493478_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_010893266.1\|2493458_2493758_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.6e-12	40.4
WP_088578414.1\|2493781_2496160_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_031337101.1\|2496243_2497239_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	9.7e-30	35.5
WP_010893263.1\|2497517_2497877_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_004090402.1\|2497887_2498085_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_075584689.1\|2498330_2498858_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-12	32.7
WP_010893260.1\|2498925_2500833_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.3e-126	37.5
WP_088578415.1\|2501924_2503007_-	phage late control D family protein	A0A088FRU7	Escherichia_phage	8.8e-93	48.4
WP_023906711.1\|2502997_2503216_-\|tail	tail protein	NA	NA	NA	NA
WP_088578416.1\|2503212_2503695_-\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	5.7e-28	46.8
WP_088578417.1\|2503691_2505911_-\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	1.5e-107	47.8
WP_088578418.1\|2506037_2506325_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	5.3e-13	43.4
WP_088578419.1\|2506327_2506837_-\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	2.0e-47	52.7
WP_088577846.1\|2506836_2508015_-\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	9.8e-138	56.1
WP_088577845.1\|2508079_2509672_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	2.7e-82	36.2
WP_088577844.1\|2509679_2510237_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.5e-51	54.4
WP_088577843.1\|2510229_2511123_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	1.5e-69	46.4
WP_042462908.1\|2511122_2511461_-\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	2.3e-31	59.5
WP_060872141.1\|2511610_2511874_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_060872142.1\|2511860_2512142_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_088578420.1\|2512187_2512775_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_088578421.1\|2512771_2513314_-	hypothetical protein	D5LGZ6	Escherichia_phage	2.6e-37	43.4
WP_088578422.1\|2513289_2513811_-	hypothetical protein	D5LGZ7	Escherichia_phage	1.6e-12	33.9
WP_088578423.1\|2513807_2514131_-	hypothetical protein	NA	NA	NA	NA
WP_088578424.1\|2514130_2514391_-	hypothetical protein	NA	NA	NA	NA
WP_088578425.1\|2514408_2516289_-\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	3.0e-165	48.7
WP_088578426.1\|2516272_2517871_-\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	9.2e-131	49.0
WP_088578427.1\|2517867_2518416_-	hypothetical protein	V5YTG8	Pseudomonas_phage	3.7e-39	50.6
WP_088578428.1\|2518419_2520372_-\|terminase	phage terminase large subunit family protein	A0A088FQV3	Escherichia_phage	9.8e-252	67.6
WP_088578429.1\|2520364_2520898_-	DNA-packaging protein	A0A193GYK5	Enterobacter_phage	8.0e-47	59.2
WP_069107045.1\|2521070_2521295_-	hypothetical protein	NA	NA	NA	NA
WP_088578430.1\|2521296_2521758_-	hypothetical protein	NA	NA	NA	NA
WP_088577829.1\|2521747_2522059_-	hypothetical protein	A0A172PZR6	Pseudomonas_phage	7.0e-19	44.0
WP_088578431.1\|2522078_2522567_-	lysozyme	A0A2I7RLY1	Vibrio_phage	9.9e-28	52.4
WP_088578625.1\|2522506_2523151_-	hypothetical protein	V5YTF6	Pseudomonas_phage	8.5e-27	50.0
WP_088578432.1\|2523647_2526182_-	DNA primase	C8CLH6	Xylella_phage	0.0e+00	71.3
WP_088578626.1\|2526320_2526890_-	hypothetical protein	C8CLH5	Xylella_phage	1.2e-64	67.2
WP_088578433.1\|2527179_2527431_-	hypothetical protein	NA	NA	NA	NA
WP_088578434.1\|2527499_2527748_-	hypothetical protein	NA	NA	NA	NA
WP_088578435.1\|2527744_2527933_-	hypothetical protein	NA	NA	NA	NA
WP_088578436.1\|2528549_2528750_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_088578437.1\|2528823_2529594_+	helix-turn-helix transcriptional regulator	C8CLH0	Xylella_phage	5.4e-28	36.0
WP_052262873.1\|2529834_2530146_+	hypothetical protein	NA	NA	NA	NA
WP_088578438.1\|2530335_2530863_+	hypothetical protein	C8CLG9	Xylella_phage	3.6e-07	34.8
WP_088578439.1\|2530859_2531228_+	hypothetical protein	C8CLG9	Xylella_phage	2.2e-32	61.9
WP_088578440.1\|2531291_2531696_+	hypothetical protein	C8CLG8	Xylella_phage	1.8e-11	68.3
WP_088578559.1\|2531752_2532235_-	hypothetical protein	NA	NA	NA	NA
WP_088578441.1\|2532534_2532726_+	hypothetical protein	NA	NA	NA	NA
WP_088578442.1\|2532749_2532941_+	hypothetical protein	C8CLG6	Xylella_phage	3.6e-18	75.0
WP_088578443.1\|2532972_2533170_+	hypothetical protein	C8CLG5	Xylella_phage	5.4e-25	93.8
WP_088578444.1\|2533221_2533665_+	hypothetical protein	C8CLG4	Xylella_phage	3.5e-32	75.7
WP_088578445.1\|2533661_2534939_+	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	1.4e-201	82.7
WP_088578446.1\|2534938_2535505_+	DUF2815 family protein	C8CLG2	Xylella_phage	4.6e-101	95.2
WP_088578627.1\|2535573_2536722_+	hypothetical protein	C8CLG1	Xylella_phage	2.5e-178	84.4
WP_088578447.1\|2536723_2538904_+	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	92.8
WP_088578448.1\|2538900_2539179_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	4.7e-43	92.3
WP_023907477.1\|2539180_2539486_-	hypothetical protein	NA	NA	NA	NA
WP_088578449.1\|2539549_2540968_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	6.9e-263	93.4
WP_167701484.1\|2540964_2541129_+	hypothetical protein	C8CLF6	Xylella_phage	2.4e-18	88.9
WP_088578450.1\|2541121_2541370_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	3.2e-35	86.6
WP_088578451.1\|2541369_2542389_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	4.6e-184	93.8
2545626:2545642	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009885

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection