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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014330 Xylella fastidiosa strain Fb7 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP010051 Xylella fastidiosa strain Fb7 chromosome, complete genome 2 crisprs csa3,Cas9_archaeal,DEDDh 0 4 11 0

Results visualization

1. NZ_CP010051
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010051_1 1461197-1461345 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010051_2 2191669-2191817 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010051_1 1.1|1461223|37|NZ_CP010051|CRISPRCasFinder 1461223-1461259 37 NZ_CP035092 Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence 602553-602589 8 0.784
NZ_CP010051_1 1.1|1461223|37|NZ_CP010051|CRISPRCasFinder 1461223-1461259 37 NC_008688 Paracoccus denitrificans PD1222 plasmid 1, complete sequence 196086-196122 8 0.784
NZ_CP010051_2 2.1|2191695|37|NZ_CP010051|CRISPRCasFinder 2191695-2191731 37 NZ_CP035092 Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence 602553-602589 8 0.784
NZ_CP010051_2 2.1|2191695|37|NZ_CP010051|CRISPRCasFinder 2191695-2191731 37 NC_008688 Paracoccus denitrificans PD1222 plasmid 1, complete sequence 196086-196122 8 0.784
NZ_CP010051_1 1.2|1461286|34|NZ_CP010051|CRISPRCasFinder 1461286-1461319 34 NZ_CP020810 Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence 61106-61139 10 0.706
NZ_CP010051_1 1.2|1461286|34|NZ_CP010051|CRISPRCasFinder 1461286-1461319 34 MN692199 Pectobacterium phage MA12, complete genome 54468-54501 10 0.706
NZ_CP010051_1 1.2|1461286|34|NZ_CP010051|CRISPRCasFinder 1461286-1461319 34 MN518139 Pectobacterium phage MA11, partial genome 29039-29072 10 0.706
NZ_CP010051_2 2.2|2191758|34|NZ_CP010051|CRISPRCasFinder 2191758-2191791 34 NZ_CP020810 Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence 61106-61139 10 0.706
NZ_CP010051_2 2.2|2191758|34|NZ_CP010051|CRISPRCasFinder 2191758-2191791 34 MN692199 Pectobacterium phage MA12, complete genome 54468-54501 10 0.706
NZ_CP010051_2 2.2|2191758|34|NZ_CP010051|CRISPRCasFinder 2191758-2191791 34 MN518139 Pectobacterium phage MA11, partial genome 29039-29072 10 0.706
NZ_CP010051_1 1.2|1461286|34|NZ_CP010051|CRISPRCasFinder 1461286-1461319 34 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 340551-340584 11 0.676
NZ_CP010051_2 2.2|2191758|34|NZ_CP010051|CRISPRCasFinder 2191758-2191791 34 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 340551-340584 11 0.676

1. spacer 1.1|1461223|37|NZ_CP010051|CRISPRCasFinder matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.784

ggagggtgccgttgctgctgatgtggccggtagcggt	CRISPR spacer
tggcggcgccgctgctgctgatgtggccggttgggat	Protospacer
 *. **.****.******************* * *.*

2. spacer 1.1|1461223|37|NZ_CP010051|CRISPRCasFinder matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.784

ggagggtgccgttgctgctgatgtggccggtagcggt	CRISPR spacer
tggcggcgccgctgctgctgatgtggccggttgggat	Protospacer
 *. **.****.******************* * *.*

3. spacer 2.1|2191695|37|NZ_CP010051|CRISPRCasFinder matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.784

ggagggtgccgttgctgctgatgtggccggtagcggt	CRISPR spacer
tggcggcgccgctgctgctgatgtggccggttgggat	Protospacer
 *. **.****.******************* * *.*

4. spacer 2.1|2191695|37|NZ_CP010051|CRISPRCasFinder matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.784

ggagggtgccgttgctgctgatgtggccggtagcggt	CRISPR spacer
tggcggcgccgctgctgctgatgtggccggttgggat	Protospacer
 *. **.****.******************* * *.*

5. spacer 1.2|1461286|34|NZ_CP010051|CRISPRCasFinder matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
acaccgtggtctgggagtcgacgttgccgccggc	Protospacer
. .. *.**************.* ********  

6. spacer 1.2|1461286|34|NZ_CP010051|CRISPRCasFinder matches to MN692199 (Pectobacterium phage MA12, complete genome) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tggcggcggtcagggagtcgatggtcttgactaa	Protospacer
 **.******* ************* ..* *  .

7. spacer 1.2|1461286|34|NZ_CP010051|CRISPRCasFinder matches to MN518139 (Pectobacterium phage MA11, partial genome) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tggcggcggtcagggagtcgatggtcttgactaa	Protospacer
 **.******* ************* ..* *  .

8. spacer 2.2|2191758|34|NZ_CP010051|CRISPRCasFinder matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
acaccgtggtctgggagtcgacgttgccgccggc	Protospacer
. .. *.**************.* ********  

9. spacer 2.2|2191758|34|NZ_CP010051|CRISPRCasFinder matches to MN692199 (Pectobacterium phage MA12, complete genome) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tggcggcggtcagggagtcgatggtcttgactaa	Protospacer
 **.******* ************* ..* *  .

10. spacer 2.2|2191758|34|NZ_CP010051|CRISPRCasFinder matches to MN518139 (Pectobacterium phage MA11, partial genome) position: , mismatch: 10, identity: 0.706

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tggcggcggtcagggagtcgatggtcttgactaa	Protospacer
 **.******* ************* ..* *  .

11. spacer 1.2|1461286|34|NZ_CP010051|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tccacacggtctcggagtggatggtgccgctgtc	Protospacer
     .****** ***** ***********.*. 

12. spacer 2.2|2191758|34|NZ_CP010051|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

gggtggcggtctgggagtcgatggtgccgccgcg	CRISPR spacer
tccacacggtctcggagtggatggtgccgctgtc	Protospacer
     .****** ***** ***********.*. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 495016 : 503387 9 Xylella_phage(16.67%) terminase NA
DBSCAN-SWA_2 820009 : 832569 13 Xylella_phage(33.33%) integrase,tRNA attL 816708:816721|attR 835454:835467
DBSCAN-SWA_3 923169 : 938809 24 Haemophilus_phage(35.71%) NA NA
DBSCAN-SWA_4 1104161 : 1110695 10 Xylella_phage(50.0%) integrase attL 1102589:1102601|attR 1111510:1111522
DBSCAN-SWA_5 1116526 : 1148044 44 Haemophilus_phage(20.69%) terminase,capsid,tail NA
DBSCAN-SWA_6 1175505 : 1186140 18 Xanthomonas_phage(50.0%) NA NA
DBSCAN-SWA_7 1464880 : 1474805 16 Vibrio_phage(16.67%) integrase,terminase attL 1459289:1459305|attR 1474231:1474247
DBSCAN-SWA_8 1802915 : 1810097 11 Stenotrophomonas_phage(50.0%) integrase attL 1800917:1800968|attR 1810114:1810165
DBSCAN-SWA_9 2071733 : 2104554 40 Haemophilus_phage(20.0%) terminase,tail NA
DBSCAN-SWA_10 2111709 : 2120395 12 Xylella_phage(18.18%) NA NA
DBSCAN-SWA_11 2305041 : 2392704 93 Xylella_phage(40.0%) plate,integrase,tail,terminase,capsid,tRNA attL 2350191:2350207|attR 2392795:2392811
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage