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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010271 Mycobacteroides saopaulense strain EPM10906 chromosome, complete genome 1 crisprs cas3,csa3,DinG,DEDDh,cas4,WYL 1 1 2 0

Results visualization

1. NZ_CP010271
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010271_1 4045602-4045744 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP010271_1 1.1|4045637|17|NZ_CP010271|PILER-CR 4045637-4045653 17 NZ_CP010271.1 248897-248913 1 0.941

1. spacer 1.1|4045637|17|NZ_CP010271|PILER-CR matches to position: 248897-248913, mismatch: 1, identity: 0.941

tccagccagcgcgccac	CRISPR spacer
tccagccagcccgccac	Protospacer
********** ******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010271_1 1.2|4045689|25|NZ_CP010271|PILER-CR 4045689-4045713 25 NZ_CP032325 Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence 113011-113035 3 0.88
NZ_CP010271_1 1.2|4045689|25|NZ_CP010271|PILER-CR 4045689-4045713 25 AP017627 Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome 73299-73323 4 0.84
NZ_CP010271_1 1.2|4045689|25|NZ_CP010271|PILER-CR 4045689-4045713 25 NZ_CP015269 Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 2, complete sequence 61531-61555 4 0.84
NZ_CP010271_1 1.2|4045689|25|NZ_CP010271|PILER-CR 4045689-4045713 25 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 1159392-1159416 4 0.84
NZ_CP010271_1 1.2|4045689|25|NZ_CP010271|PILER-CR 4045689-4045713 25 NZ_AP020328 Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p2-JPH1, complete sequence 39050-39074 4 0.84
NZ_CP010271_1 1.2|4045689|25|NZ_CP010271|PILER-CR 4045689-4045713 25 KM659098 Sinorhizobium sp. LM21 plasmid pLM21S1, complete sequence 39643-39667 4 0.84
NZ_CP010271_1 1.2|4045689|25|NZ_CP010271|PILER-CR 4045689-4045713 25 NZ_CP012886 Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence 143811-143835 4 0.84
NZ_CP010271_1 1.2|4045689|25|NZ_CP010271|PILER-CR 4045689-4045713 25 NZ_CP017105 Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence 1747743-1747767 4 0.84
NZ_CP010271_1 1.2|4045689|25|NZ_CP010271|PILER-CR 4045689-4045713 25 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 89339-89363 5 0.8

1. spacer 1.2|4045689|25|NZ_CP010271|PILER-CR matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 3, identity: 0.88

gtcttgccgtccgcggtcgccgagg	CRISPR spacer
ggcctgccctccgcggtcgccgagg	Protospacer
* *.**** ****************

2. spacer 1.2|4045689|25|NZ_CP010271|PILER-CR matches to AP017627 (Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome) position: , mismatch: 4, identity: 0.84

gtcttgccgtccgcggtcgccgagg	CRISPR spacer
cgcgagccgtccgcggtcgccgagg	Protospacer
  *  ********************

3. spacer 1.2|4045689|25|NZ_CP010271|PILER-CR matches to NZ_CP015269 (Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 2, complete sequence) position: , mismatch: 4, identity: 0.84

gtcttgccgtccgcggtcgccgagg	CRISPR spacer
cacttgccgcccgaggtcgccgagg	Protospacer
  *******.*** ***********

4. spacer 1.2|4045689|25|NZ_CP010271|PILER-CR matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 4, identity: 0.84

gtcttgccgtccgcggtcgccgagg	CRISPR spacer
atcttggcgtccgcggccgccgaga	Protospacer
.***** *********.*******.

5. spacer 1.2|4045689|25|NZ_CP010271|PILER-CR matches to NZ_AP020328 (Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p2-JPH1, complete sequence) position: , mismatch: 4, identity: 0.84

gtcttgccgtccgcggtcgccgagg	CRISPR spacer
cacttgccgcccgaggtcgccgagg	Protospacer
  *******.*** ***********

6. spacer 1.2|4045689|25|NZ_CP010271|PILER-CR matches to KM659098 (Sinorhizobium sp. LM21 plasmid pLM21S1, complete sequence) position: , mismatch: 4, identity: 0.84

gtcttgccgtccgcggtcgccgagg	CRISPR spacer
ttcttgccatccgcggtcgcccaga	Protospacer
 *******.************ **.

7. spacer 1.2|4045689|25|NZ_CP010271|PILER-CR matches to NZ_CP012886 (Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gtcttgccgtccgcggtcgccgagg	CRISPR spacer
cacttgccgcccgaggtcgccgagg	Protospacer
  *******.*** ***********

8. spacer 1.2|4045689|25|NZ_CP010271|PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 4, identity: 0.84

gtcttgccgtccgcggtcgccgagg	CRISPR spacer
gtcttgccgttcggggtcgccgaaa	Protospacer
**********.** *********..

9. spacer 1.2|4045689|25|NZ_CP010271|PILER-CR matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.8

gtcttgccgtccgcggtcgccgagg	CRISPR spacer
tctgtgccgtccgcggtcaccgagg	Protospacer
 .. **************.******

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2642308 : 2650759 7 Streptococcus_phage(16.67%) NA NA
DBSCAN-SWA_2 3881025 : 3889176 7 Burkholderia_phage(28.57%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage