CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LN831051	Streptococcus pneumoniae strain NCTC7465 chromosome 1	4 crisprs	cas3,RT,csa3,DEDDh,DinG	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LN831051_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN831051_1

366291-366386

Orphan

Consensus_repeat	Method
TTATATATAAAAATTTTACACATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN831051_1

>merge|NZ_LN831051|1|366291-366386|CRISPRCasFinder
TTATATATAAAAATTTTACACATTTCTCTTGACAGGGCTTTCTTTTAGATGTACAATGTATATGTAGAAAAATTATATATAAAAATCTTACACATT

>NZ_LN831051|1|1|366291-366386|CRISPRCasFinder
TTATATATAAAAATTTTACACATT	TCTCTTGACAGGGCTTTCTTTTAGATGTACAATGTATATGTAGAAAAA
TTATATATAAAAATCTTACACATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN831051.1\|WP_000198692.1\|366716_367310_+\|DUF1700-domain-containing-protein	unknown	unknown	gnl\|CDD\|227053
NZ_LN831051.1\|WP_001140347.1\|369517_370378_-\|DUF4299-domain-containing-protein	unknown	unknown	gnl\|CDD\|339103
NZ_LN831051.1\|WP_001030032.1\|370499_371486_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|234663
NZ_LN831051.1\|WP_000744903.1\|365098_366265_+\|CynX/NimT-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340897
NZ_LN831051.1\|WP_000200890.1\|361048_361681_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319798
NZ_LN831051.1\|WP_000800407.1\|371757_373233_-\|DUF3502-domain-containing-protein	unknown	unknown	gnl\|CDD\|378792
NZ_LN831051.1\|WP_000500040.1\|360154_361027_+\|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-alpha	unknown	unknown	gnl\|CDD\|129801
NZ_LN831051.1\|WP_000096213.1\|363901_365041_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133016
NZ_LN831051.1\|WP_001189271.1\|358288_358609_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN831051.1\|WP_001035706.1\|361983_363834_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|224011
NZ_LN831051.1\|WP_001230167.1\|357579_357864_-\|lactococcin-972-family-bacteriocin	unknown	unknown	gnl\|CDD\|370615
NZ_LN831051.1\|WP_000273863.1\|366403_366730_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_LN831051.1\|WP_001075102.1\|373316_374240_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_LN831051.1\|WP_000723960.1\|355416_357525_-\|bacteriocin-associated-integral-membrane-family-protein	unknown	unknown	gnl\|CDD\|273736
NZ_LN831051.1\|WP_000836451.1\|358660_359233_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_LN831051.1\|WP_000838912.1\|359474_360146_+\|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-beta	unknown	unknown	gnl\|CDD\|224674
NZ_LN831051.1\|WP_000714582.1\|374253_375183_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
NZ_LN831051.1\|WP_000148252.1\|375501_375852_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN831051.1\|WP_000808443.1\|368276_369341_+\|membrane-protein	unknown	unknown	gnl\|CDD\|370966
NZ_LN831051.1\|WP_001233685.1\|367302_368214_+\|DUF4097-domain-containing-protein	unknown	unknown	gnl\|CDD\|372574

Protein	Function_ID	Function_description	E-value
NZ_LN831051.1\|WP_001140347.1\|369517_370378_-\|DUF4299-domain-containing-protein	gnl\|CDD\|339103	pfam14132, DUF4299, Domain of unknown function (DUF4299). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 275 and 313 amino acids in length. There are two conserved sequence motifs: RGF and DAY. There are two completely conserved residues (P and D) that may be functionally important.	6.60514e-120
NZ_LN831051.1\|WP_001030032.1\|370499_371486_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|234663	PRK00142, PRK00142, rhodanese-related sulfurtransferase.	0
NZ_LN831051.1\|WP_000744903.1\|365098_366265_+\|CynX/NimT-family-MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.00309e-125
NZ_LN831051.1\|WP_000200890.1\|361048_361681_+\|HAD-family-hydrolase	gnl\|CDD\|319798	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065. 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	8.29103e-98
NZ_LN831051.1\|WP_000836451.1\|358660_359233_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	5.58739e-13
NZ_LN831051.1\|WP_000800407.1\|371757_373233_-\|DUF3502-domain-containing-protein	gnl\|CDD\|378792	pfam12010, DUF3502, Domain of unknown function (DUF3502). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 140 amino acids in length. This domain is found associated with pfam01547.	4.24398e-44
NZ_LN831051.1\|WP_000500040.1\|360154_361027_+\|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-alpha	gnl\|CDD\|129801	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit. This enzyme is also called serine deaminase. L-serine dehydratase converts serine into pyruvate in the gluconeogenesis pathway from serine. This model describes the alpha chain of an iron-sulfur-dependent L-serine dehydratase, found in Bacillus subtilis. A fairly deep split in a UPGMA tree separates members of this family of alpha chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	1.44295e-105
NZ_LN831051.1\|WP_000096213.1\|363901_365041_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133016	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.	9.65723e-108
NZ_LN831051.1\|WP_001035706.1\|361983_363834_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
NZ_LN831051.1\|WP_001230167.1\|357579_357864_-\|lactococcin-972-family-bacteriocin	gnl\|CDD\|370615	pfam09683, Lactococcin_972, Bacteriocin (Lactococcin_972). These sequences represent bacteriocins related to lactococcin. Members tend to be found in association with a seven transmembrane putative immunity protein.	4.66681e-22
NZ_LN831051.1\|WP_000273863.1\|366403_366730_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	8.86871e-19
NZ_LN831051.1\|WP_001075102.1\|373316_374240_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	5.04007e-69
NZ_LN831051.1\|WP_000723960.1\|355416_357525_-\|bacteriocin-associated-integral-membrane-family-protein	gnl\|CDD\|273736	TIGR01654, unnamed_protein_product, bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear. [Cellular processes, Toxin production and resistance].	0
NZ_LN831051.1\|WP_000198692.1\|366716_367310_+\|DUF1700-domain-containing-protein	gnl\|CDD\|227053	COG4709, COG4709, Predicted membrane protein [Function unknown].	3.2841e-63
NZ_LN831051.1\|WP_000838912.1\|359474_360146_+\|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-beta	gnl\|CDD\|224674	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism].	1.1908e-89
NZ_LN831051.1\|WP_000714582.1\|374253_375183_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	3.01638e-143
NZ_LN831051.1\|WP_000808443.1\|368276_369341_+\|membrane-protein	gnl\|CDD\|370966	pfam10310, DUF5427, Family of unknown function (DUF5427). This is a domain of unknown function. Family members found in Saccharomyces cerevisiae, are synthetic lethal with genes involved in maintenance of telomere capping. However, experimental evidence is yet to verify the exact function of family members and the domain.	9.90573e-05
NZ_LN831051.1\|WP_001233685.1\|367302_368214_+\|DUF4097-domain-containing-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	1.5652e-38

>NZ_LN831051.1|WP_000744903.1|365098_366265_+|CynX/NimT-family-MFS-transporter
MKKQSLFFVPGIILIGVSLRTPFTVLPIILGNISQGLEVEVSSLGVLTSLPLLMFTLFSPFSTRLAQKIGLEHLFTYSLFFLTIGSLIRLINLPLLYLGTLMVGASVAVINVLLPSLIQANQPKKIGFLTTLYVTSMGIATALASYLAVPITQASSWKGLILLLTLLCLATFLVWLPNHRYNHRLAPQTKQKSQIKVMRNKQVWAIIIFSGFQSLIFYTAMTWLPTMSIHAGLSSHEAGLLTSILSLISIPFSMTIPSLTTSLSTRNRQLMLTLVSLAGVVGISMLFFPINNFIYWLAIHLLIGTATSALFPYLMVNFSLKTSAPEKTAQLSGLSQTGGYILAAFGPTLFGYSFDLFHSWVPAVAALLLIDILMTVALFTVDRADKIL
>NZ_LN831051.1|WP_000096213.1|363901_365041_-|glycosyltransferase-family-2-protein
MSSKVSGFQDKNGKVLKIMIEWWKGKFRRVVVTQNVESLLVSIVISAYNEEKYLPGLIEDLKNQTYPKENIEILFINAMSTDGTTAIIQQFIKEDAEFNSIRLYNNPKKNQASGFNLGVKHSVGGLILKIDAHSKVTESFVMNNVAVIQQGEFVCGGPRPTIVKGKGKWAETLHLVEENMFGSSIANYRNSSEDRYVSSIFHGMYKREVFQKVGLVNEQLGRTEDNDIHYRIREHGYKIRYSPSILSYQYIRPTFKKMLHQKYSNGLWIGLTSHVQFKCLSLFHYVPCLFVLSLVFSLALLPITFVFITLLLGAYFLLLSLLSLLTLLTLLKHKNGFLIVMPFLLFSIHFAYGLGTIVGLIRGFKWKKEYKGTVIYLEK
>NZ_LN831051.1|WP_001035706.1|361983_363834_-|polysaccharide-biosynthesis-protein
MNKKLTDYVIDLVEILNKQQKQVFWGIFDIFSMVVSIIVSYILFYGLINPAPVDYIIYTSLAFLFYQLMVDFWGLSASISRYSKITDFMKIFFGVTASSVLSYSICYAFLPLFSIRFIILFILLSAFLILLPRITWQLIYSRRKKGSGDGEHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLGGIPVLGSYDNLPELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQKIDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGENSIYLVYHELIRKFQGIDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERNPKEAFKNNIRGTYNVARAVDEAKVPKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQRSQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGAYAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELVDNQVMDKIFVGKVNVMPLESINQKIGEFRTLSGDELKQAIIAFANQTTHIE
>NZ_LN831051.1|WP_000200890.1|361048_361681_+|HAD-family-hydrolase
MTSITAIFFDLDGTLVDSSIGIHNAFTYTFKELGVPSPDAKTIRGFMGPPLESSFATCLSKDQISEAMQIYRSYYKAKGIYEAQLFPQIIDLLEELSSSYPLYITTTKNTSTAQDMAKNLEIHHFFDGIYGSSPEAPHKADVIHQALQTHQLAPEQAIIIGDTKFDMLGARETGIQKLAVTWGFGEQADLLNYQPDYIAHKPLEVLAYFQ
>NZ_LN831051.1|WP_000500040.1|360154_361027_+|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-alpha
MFYSIKELVEQADLDFQGNVAELMITTEFELTGREREEVFLLMERNLEVMKASVQLGLNENKSRSGLTGGDAAKLDHYIKNEKTLSDYTILSAARNAIAVNEHNAKMGLVCATPTAGSAGCLPSVLTAAIEKLDLSHEQQLDFLFAAGAFGLVIANNASISGAEGGCQAEVGSASAMSAAALTLAAGGTPYQASQAIAFVIKNMLGLICDPVAGLVEVPCVKRNAMGASFAFIAADMALAGIESKIPVDEVIDAMYQVGASMPTAFRETAEGGLATTPTGRRLQKEIFGE
>NZ_LN831051.1|WP_000838912.1|359474_360146_+|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-beta
MKSLRFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFDDTPTEVEFQLFNSFAKTYRGHGTDLALVAGILGMDTDDPEIPNSLEIAHKRGIKIVWTIQKDSNAPHPNTTKITVKNAHKTISVTGISIGGGNIQVTELNGFAVSLNMNTPTIIIVHQDIPGMIALVTEALSRYGINIAQMNVTREKAGEKAIMIIEVDSRNCDEAIEEIRKIPHLHNVNFFK
>NZ_LN831051.1|WP_000836451.1|358660_359233_-|LysM-peptidoglycan-binding-domain-containing-protein
MKSITKKIKATLAGVAALFAVFSPSFVSAQESSTYTVKEGDTLSEIAETHNTTVEKLAENNHIDNIHLIYVDQELVIDGPVAPVATPAPATYAAPAAQDETVSAPVVSETVVSTVSGSEAEAKEWIAQKESGGSYTATNGRYIGRYQLTDSYLNGDYSAENQERVADAYVAGRYGSWTAAKNFWLNNGWY
>NZ_LN831051.1|WP_001189271.1|358288_358609_+|hypothetical-protein
MQRLEVYKNYQHLYDLQIAILLNLSTLYLYNQDKNMCKQICYTLLEDAKNKKSYDRLAICYVRIGICTDDSKLIQKGFSLLELTEETSMLSHLKKEVEIYYQAKER
>NZ_LN831051.1|WP_001230167.1|357579_357864_-|lactococcin-972-family-bacteriocin
MRKLVKIGVASLMVCSILASTSVLAVWVDGGQWNYGVGWSGNFGYSDYLHSTRSHTATVKDGNKFSKDRAEAEAWARASIFKFPPTGMEYFYGF
>NZ_LN831051.1|WP_000723960.1|355416_357525_-|bacteriocin-associated-integral-membrane-family-protein
MKKISHLCMLLLLLCTTFFVFNVNYTREVVRIQEMGKTVDSLDLYLKDINEPAASVLRFFEDVSKEYKVSIIKTDSGDEVVKSGVFDKDTFPYQEFGISSLDFTTDGEGVYSNKEISNKLGTIPTFLKAKPIQLMTFQTYIKDTSRSLNGRYTITSTQEMDKDRIVQKWSDFFKIDQATLLEPTYKSAVEVINRDLLLSAIVFVLAILLLVLVTVYQPMMEMKRVGVQKLLGFQDRAVLADVVKGNLYLLLGGALVINLGVFFLLDYKPKDLFPMLWLSHFLLLQLYLFISWLTYLLIQKMTISSLLKGFSSFKFGLLFNYLMKIGTTILLTVLLVGVGKSLEQENKELDYQKQWISQGNYLTLETFQLNDNLWQEQLAGSGKALDYFYRFYQDLVEKTQAGYVQSSSLPVKNFVQSEQIQQYQLTDTVDVYYANRNFLKSKGFKLPDTGIKKVILMPASTKGEEDKNQLLGKLIAFHSMKYEEQQKRTIEEMDVEIAYYEGDWSFFPYSDKRKENLSNPIISLVNDSDMMWDEKASLSTTGLNNPIKIENTVQHQKEITELVEKLSDGNYLKFSSIQAIQQEKVDSYRDAVRNFNLLFALFGLLSMMISYFLLVITFLLKRRDIITKKFMGWKLVDRYRPLLVLLLLGYSFPLLVLIFFAHAFLPLLLFAGFTCLDILFVLVLASRMEKRSLVELLKGGIL
>NZ_LN831051.1|WP_000273863.1|366403_366730_+|PadR-family-transcriptional-regulator
MYFPTSSALIEFLILAVLEQGDSYGYEISQTIKLIANIKESTLYPILKKLEGNSFLTTYSREFQGRMRKYYSLTNGGIEQLLTLKDEWALYTDTINGIIEGSIRHDKN
>NZ_LN831051.1|WP_000198692.1|366716_367310_+|DUF1700-domain-containing-protein
MTRTEYLTQLELYLKKLPEADRIEAMDYFRELFDDAGVEGEEELIASLGTPKEAAHEVLSNLLDKKINEAPAQKNNRQILHIALLALLAAPIGIPLGIAILVTLFAILVAALTVILAFFAVSILGIIGGFLFLVESFTVLAQAKSAFILIFGSGLLAIGASSLVLLGISYVARFFGLLIVRLVQFVLKKRKRGNQHA
>NZ_LN831051.1|WP_001233685.1|367302_368214_+|DUF4097-domain-containing-protein
MRKWTKGFLIFGVVTTVIGFILLFVGIQSDGIKSLLSMSKEPIYDSRTEKLTFGKEVENLEITLHQHALTITDSFDDQIHISYHPSLSAHHDLITNQNDRTLSLTDKKLSETPFLSSGIGGILHIASSYSSRFEEVILQLPKGRTLKGINISANRGQTTIINASLENATLNTNSYILRIEGSRIKNSKLTTPNIVNIFDTVLTDSQLESTENHFHAENIQVHGKVELTAKDYLRIILNQKESQRINWDISSNYGSIFQFTREKPESRGTELSNPYKTEKTDVKDQLIARSDDNIDLISTPSRR
>NZ_LN831051.1|WP_000808443.1|368276_369341_+|membrane-protein
MKQEWFESNDFVKTTSKNKPEEQAQEVADKAEETIADLDTPIEKNTQLEEEVPQAEVELESQQEEKIEAPEDSEARTEIEEKKASNSTEEEPDLSKETEKVTIAEESQEALPQQKATTKEPLLISKSLESPYIPDQAPKSRDKWKEQVLDFWSWLVEAIKSPTSKLETSITHSYTAFLLLILFSASSFFFSIYHIKHAYYGHIASINSRFPEQLAPLTLFSIISILVATTLFFFSFLLGSFVVRRFIHQEKDWTLDKVLQQYSQLLAIPIFLTAIASFFAFFDSLRFTALLCVISIGIILLASLHIITRPSQASETDSFYQLFLSVLVNGVIILLFFVAEVALIGDYLRILAFL
>NZ_LN831051.1|WP_001140347.1|369517_370378_-|DUF4299-domain-containing-protein
MAKTFFIPNKQSILGEQEILNAKSILALLDGLESHSYDVVYLRQPLNRLEYIECAIVGQSQFLFKVSYADGQKAYRVDLPDLLTKTDWQIIKSFLDALLAYTGTDIEGLDGFDFEAYFQASIQAYLADPVARFTICQGIFNPIFFSRENLKSFLEADGLAQFEARVRAVQETDAYFARVSFYQDGEGKVHGVYHLAQGVKTVLPREPFVPAAYIEQLVDKEVQWEIDLVQITGDGSKPEDYEAIARLDYAKFLEVLPLSFYHQLDANQIEVQPILDKDFKALAQEE
>NZ_LN831051.1|WP_001030032.1|370499_371486_-|rhodanese-related-sulfurtransferase
MAKDIRVLLYYLYTPIENAEQFAADHLAFCKSIGLKGRILVADEGINGTVSGDYETTQKYMDYVHSLPGMEELWFKIDEESEQAFKKMFVRYKKEIVHLGLEDNDFDNDINPLETTGAYLSPKEFKEALLDKDTVVLDTRNDYEYDLGHFRGAIRPDIRNFRELPQWVRDNKEKFMDKRVVVYCTGGVRCEKFSGWMVREGYKDVGQLHGGIATYGKDPEVQGELWDGKMYVFDERIAVDVNHVNPTIVGKDWFDGTPCERYVNCGNPFCNRRILTSEENEDKYLRGCSHECRVHPRNRYVSKNELTQAEVIERLAAIGESLDQAATV
>NZ_LN831051.1|WP_000800407.1|371757_373233_-|DUF3502-domain-containing-protein
MKNWKKYAFASASVVALAAGLAACGNLTGNSKKAADSGDKPVIKMYQIGDKPDNLDELLANANKIIEEKVGAKLDIQYLGWGDYGKKMSVITSSGENYDIAFADNYIVNAQKGAYADLTELYKKEGKDLYKALDPAYIKGNTVNGKIYAVPVAANVASSQNFAFNGTLLAKYGIDISGVTSYETLEPVLKQIKEKAPDVVPFAIGKVFIPSDNFDYPVANGLPFVIDLEGDTTKVVNRYEVPRFKEHLKTLHKFYEAGYIPKDVATSDTSFDLQQDTWFVREETVGPADYGNSLLSRVANKDIQIKPITNFIKKNQTTQVANFVISNNSKNKEKSMEILNLLNTNPELLNGLVYGPEGKNWEKIEGKENRVRVLDGYKGNTHMGGWNTGNNWILYINENVTDQQIENSKKELAEAKESPALGFIFNTDNVKSEISAIANTMQQFDTAINTGTVDPDKAIPELMEKLKSEGAYEKVLNEMQKQYDEFLKNKK
>NZ_LN831051.1|WP_001075102.1|373316_374240_-|carbohydrate-ABC-transporter-permease
MAKKKIKKEKIDNVGIHSFSKKADIFFSIISGLIALSCILPFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFKDKILQALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIMVTRVLQLGDTVWALIVPMLLSPFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICLPLSLPGIATITLLTALGFWNDWFNALLYIKSDNLYPLQYLLMQIQQNMDYIAKAVGLTGQLGVALPKETGRMAMVVVATLPIAILYPFFQRYFVKGLTIGGVKE
>NZ_LN831051.1|WP_000714582.1|374253_375183_-|sugar-ABC-transporter-permease
MKKFSKTLRDNWIFLLMVLPGALWLILFFYIPVFGNVVAFKDYHMTSNGFIDSIINSKWVGLDNFRFLFSSRDAFIITRNTVLYNLGFIFLGLVVSVGIAIILSELRSKRMVKIFQTSMLFPYFLSWVIISFFTDAFLNIDKGVFNHLLESLGLKEVNFYADLGIWPYLLLFLGIWKGFGYSSVMYYATIMGIDPTYYEAATVDGASKWQRIRNVTIPQLTPLVTVLTILAVGNIFRADFGLFYQIPHNAGQLYNVTNVLDVYVFNGLTQTADIGMAAAAGLYQSVVGLILVILSNLLARRVDPNSALF
>NZ_LN831051.1|WP_000148252.1|375501_375852_-|hypothetical-protein
MTGVSNPTTDSARLVLAEAKKAFADDSLTEQGLRDILQTVKDAIASLESIKESQSATKDGGQTAGKETADKDVLENSQEELQKAVLFLADEKGSEHTEAELIDNLKEVIAKLKANA

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Crispr_ID: NZ_LN831051_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN831051_2

945487-945570

Orphan

Consensus_repeat	Method
AAAAATGAAACGTTTCAAAAAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN831051_2

>merge|NZ_LN831051|2|945487-945570|CRISPRCasFinder
AAAAATGAAACGTTTCAAAAAAGAAATAAAGAGACAGCGCCAAGCGCCATCTTTTCTAGAAAAAATGAAACGTTTCAAAAAGGA

>NZ_LN831051|2|2|945487-945570|CRISPRCasFinder
AAAAATGAAACGTTTCAAAAAAGA	AATAAAGAGACAGCGCCAAGCGCCATCTTTTCTAGA
AAAAATGAAACGTTTCAAAAAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN831051.1\|WP_000229330.1\|938352_939123_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_LN831051.1\|WP_000797237.1\|952684_952933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN831051.1\|WP_000030213.1\|941336_941903_-\|alkaline-shock-response-membrane-anchor-protein-AmaP	unknown	unknown	gnl\|CDD\|380217
NZ_LN831051.1\|WP_001113225.1\|950914_952186_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_LN831051.1\|WP_000502561.1\|949050_950370_+\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|224536
NZ_LN831051.1\|WP_025173802.1\|945577_946495_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
NZ_LN831051.1\|WP_000961810.1\|953285_953738_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_LN831051.1\|WP_000797961.1\|946505_947396_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_LN831051.1\|WP_000064115.1\|940507_941116_-\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|224221
NZ_LN831051.1\|WP_000109957.1\|940273_940477_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NZ_LN831051.1\|WP_000230201.1\|944427_945429_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_LN831051.1\|WP_000782425.1\|937489_938338_+\|formylglycine-generating-enzyme-family-protein	unknown	unknown	gnl\|CDD\|335469
NZ_LN831051.1\|WP_000192221.1\|953075_953249_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_LN831051.1\|WP_000818079.1\|952455_952695_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN831051.1\|WP_001809002.1\|941986_942151_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_LN831051.1\|WP_016398465.1\|939400_939688_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_LN831051.1\|WP_000455066.1\|941154_941325_-\|DUF2273-domain-containing-protein	unknown	unknown	gnl\|CDD\|227834
NZ_LN831051.1\|WP_001205301.1\|942593_944066_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|285470
NZ_LN831051.1\|WP_000257100.1\|954028_954499_+\|DUF3013-family-protein	unknown	unknown	gnl\|CDD\|337951
NZ_LN831051.1\|WP_000669749.1\|947424_949041_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270299

Protein	Function_ID	Function_description	E-value
NZ_LN831051.1\|WP_000229330.1\|938352_939123_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.97394e-17
NZ_LN831051.1\|WP_000030213.1\|941336_941903_-\|alkaline-shock-response-membrane-anchor-protein-AmaP	gnl\|CDD\|380217	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP. The founding member of this family, AmaP (Asp23 membrane anchoring protein), is related to Asp23 through part of its length, but includes a highly hydrophobic N-terminal region that should make it an integral membrane protein. Asp23 (alkaline shock protein of 23 kDa), described in PMID:7864904, is a cytosolic protein in Staphylococcus aureus, strongly induced by a pH shift from 7 to 10, and also recruited to the membrane. AmaP appears to be the partner protein with an integral membrane segment and the ability to anchor Asp23 to the membrane. This model was built to identify full-length homologs of AmaP, while excluding Asp23. Some but not all members of this family score above the cutoffs of Pfam model version PF03780.11, but full-length homologs of Asp23 score considerably higher. Asp23 family members previously were known as DUF322.	7.65552e-46
NZ_LN831051.1\|WP_001113225.1\|950914_952186_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_LN831051.1\|WP_000502561.1\|949050_950370_+\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	6.96785e-177
NZ_LN831051.1\|WP_025173802.1\|945577_946495_+\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	5.21662e-137
NZ_LN831051.1\|WP_000961810.1\|953285_953738_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	1.2282e-11
NZ_LN831051.1\|WP_000797961.1\|946505_947396_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.20755e-67
NZ_LN831051.1\|WP_000064115.1\|940507_941116_-\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	1.35166e-33
NZ_LN831051.1\|WP_000109957.1\|940273_940477_-\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	1.20386e-07
NZ_LN831051.1\|WP_000230201.1\|944427_945429_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.44937e-98
NZ_LN831051.1\|WP_000782425.1\|937489_938338_+\|formylglycine-generating-enzyme-family-protein	gnl\|CDD\|335469	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.	2.9109e-66
NZ_LN831051.1\|WP_000192221.1\|953075_953249_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	3.3112e-07
NZ_LN831051.1\|WP_001809002.1\|941986_942151_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	6.92661e-06
NZ_LN831051.1\|WP_016398465.1\|939400_939688_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	5.2782e-14
NZ_LN831051.1\|WP_000455066.1\|941154_941325_-\|DUF2273-domain-containing-protein	gnl\|CDD\|227834	COG5547, COG5547, Small integral membrane protein [Function unknown].	9.45975e-16
NZ_LN831051.1\|WP_001205301.1\|942593_944066_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|285470	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain. Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This corresponds to the PRD like region.	2.39278e-74
NZ_LN831051.1\|WP_000257100.1\|954028_954499_+\|DUF3013-family-protein	gnl\|CDD\|337951	pfam11217, DUF3013, Protein of unknown function (DUF3013). This bacterial family of proteins with unknown function appear to be restricted to Firmicutes.	4.52511e-66
NZ_LN831051.1\|WP_000669749.1\|947424_949041_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270299	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	0

>NZ_LN831051.1|WP_000230201.1|944427_945429_+|LacI-family-DNA-binding-transcriptional-regulator
MVEQRKSITMKDVALEAGVSVGTVSRVINKEKGIKEVTLKKVEQAIKTLNYIPDYYARGMKKNRTETIAIIVPSIWHPFFSEFAMHVENEVYKRNNKLLLCSINGTNREQDYLEMLRHNKVDGVVAITYSPIEHYLTSGIPFVSIDRTYSDIAIPCVSSDNDAGGREAAKQLISKGCQHLAFVGGHNTTINETKRRRISFEKYVQEHKIPLSIFDLDETVTDYYGKLESFLEENSSIDGIFTINDFTALDVIEIIEKNGKRIPHDVQIIGYDGIKMAGDRDYLLSTIEQPLEEMAKEAVRILFDIIDGKTVNLQTILPVKFVEGKTTKNENKS
>NZ_LN831051.1|WP_001205301.1|942593_944066_+|helix-turn-helix-domain-containing-protein
MRDLLSKKSHRQLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGIRIINTDDSDIEMVYHHFFKHSTHFSILEFIFFNEGCQAESICKEFYISSSSLYRIISQINKVIKRQFQFEVSLTPVQIIGNERDIRYFFAQYFSEKYYFLEWPFENFSSEPLSQLLELVYKETSFPMNLSTHRMLKLLLVTNLYRIKFGHFMEVDKDSFNDQSLDFLMQAEGIEGVAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKDSYVEKSYHLLSDFIDQISVKYQIEIENKDNLIWHLHNTAHLYRQELFTEFILFDQKGNTIRNFQNIFPKFVSDVKKELSHYLETLEVCSSSMMVNHLSYTFITHTKHLVINLLQNQPKLKVLVMSNFDQYHAKFVAETLSYYCSNNFELEVWTELELSKESLEDSSYDIIISNFIIPPIENKRLIYSNNINTVSLIYLLNAMMFIRLDE
>NZ_LN831051.1|WP_001809002.1|941986_942151_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGIIANVFAGLVGAYAGQSLLGSWGPSIAGMALLPSIVGAAIVITVVSFFTGRK
>NZ_LN831051.1|WP_000030213.1|941336_941903_-|alkaline-shock-response-membrane-anchor-protein-AmaP
MSKAKKICFIIFCILILTIFLPVLIDYHQVSDLGIHLLSWRQNSVVEFYLARYVFWGTVVLSTLVLLSILVVMFYPKRYLEIQLETKNDTLKLKNSAIEGFVRSLVSDHRLIKNPTVHVNLRKNKCFVHVEGKILPSDNIADRCQIIQNEITNGLKQFFGIERQVKLEVAVKNYQPKPQNKKTVSRVK
>NZ_LN831051.1|WP_000455066.1|941154_941325_-|DUF2273-domain-containing-protein
MEWLKQYRYPIIAGLIGVFLACLIVSFGFFKTIFVLILGALGVAAGLYIEKNYIDK
>NZ_LN831051.1|WP_000064115.1|940507_941116_-|Asp23/Gls24-family-envelope-stress-response-protein
MSNEKNTNTNVEKKDATVVAHEIKGELTYEDKVIQKIIGLSLENVSGLLGIDGGFFSNLKEKIVNSDDVTSGVNVEVGKTQVAVDLNVIVEYQKNVPALYSEIREIVSSEVAKMTDLEIVEINVNVVDIKTKEQHEADSVSLQDRVSDVAESTGEFTSEQFEKAKSGLGSGFSTVQEKVSEGVEAVKGAANGVVSHENTRVN
>NZ_LN831051.1|WP_000109957.1|940273_940477_-|CsbD-family-protein
MSVEEKLNQAKGSIKEGVGKAIGDEKMEKEGAAEKVVSKVKEVAEDAKDAVEGAVEGVKNMLSGDDK
>NZ_LN831051.1|WP_016398465.1|939400_939688_-|IS30-family-transposase
MIVSLKTKSRKAKDMAESIQGWLAQFLVNLFKSITFDCGKEFSKWKDISNHHDSESFFANLGCPRQRRLNEHSNRLLRCHDLPKQTDFNEVSQEF
>NZ_LN831051.1|WP_000229330.1|938352_939123_+|sulfite-exporter-TauE/SafE-family-protein
MVEIIYFLIIIIASGLGSISGMGGGIIIKPLMDSFGYHSVSDIAFYSSFSVFIMAIISTIKRFSQSKEIKWRLIFTVSFSSVLGGFLGHLIFQVLLSQLSVRLVSIVQMILLFVMLLVSFVLTDFKKTYQFDKIGFYMICGLLLGLISSFLGIGGGPLNVSLLMVFFSISIKEATMYSLAIIFFSQLSHLATIVVVTGLNQYHLAPVPVIFLASICGGVLGTVVSKVLPENWVRYCFKGMLFCVMGMTLYNLFHIL
>NZ_LN831051.1|WP_000782425.1|937489_938338_+|formylglycine-generating-enzyme-family-protein
MKMKKIKGGTFMMGTNSEEGFLDDFEGPQVAVSVKDFSIADTPVTNQEFAQFVKETGYKTLAERQEWSFVFILFVPEAEREGYPHPAGAPWWLQVPNACWKHPYGENSNLVGLEDHPVVHVALEDALAFCNWSGMSLPTEAQWEYAARGGRQSEYPWGDTLLEGGYYHANTWQGRFPYENTALDGFIGTAPVYEFLPNDFGLYQMIGNVWEWCRNPRYTLLASFNEDDYELPKYGIQDEEYAIRGGSFLCHCSYCNRYRVAARNGCISTSTSSHLGFRCLKE
>NZ_LN831051.1|WP_025173802.1|945577_946495_+|sugar-ABC-transporter-permease
MNSKAKQVSLWERIKKQKLLLLMTVPGLVLTFIFKYISMYGVLIAFKDYNPLKGILGSDWIGFSEFTKFISSPNFGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISVVVIVGMIFLFFSVGGPINNFLSMFGMKADFLTNPDFFRPLYIFSGIWQGMGWASTLYTATLVNVDPALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQTSLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNGEGI
>NZ_LN831051.1|WP_000797961.1|946505_947396_+|carbohydrate-ABC-transporter-permease
MKNSIMDTKFDRRILLLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIILARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQPGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLKG
>NZ_LN831051.1|WP_000669749.1|947424_949041_+|ABC-transporter-substrate-binding-protein
MKFKTFSKSAVLLTASLAVLAACGSKNTASSPDYKLEGVTFPLQEKKTLKFMTASSPLSPKDPNEKLILQRLEKETGVHIDWTNYQSDFAEKRNLDISSGDLPDAIHNDGASDVDLMNWAKKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFPWIEELGDGKESIHSVNDMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNGNGEADEIPFTFISGNGNEDFKFLFAAFGIGDNDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEKGLIDKEAFEHDWNSYIAKGHDQKFGVYFTWDKNNVTGSNESYDVLPVLAGPSGQKHVARTNGMGFARDKMVITSVNKNLELTAKWIDAQYAPLQSVQNNWGTYGDDKQQNIFELDQASNSLKHLPLNGTAPAELRQKTEVGGPLAILDSYYGKVTTMPDDAKWRLDLIKEYYVPYMSNDNNYPRVFMTQEDLDKIAHIEADMNDYIYRKRAEWIVNGNIDTEWDDYKKELEKYGLSDYLAIKQKYYDQYQANKN
>NZ_LN831051.1|WP_000502561.1|949050_950370_+|glycoside-hydrolase-family-32-protein
MGDKKYTVEKANRFIAENKHLVNTQYKPEEHFSAEIGWINDPNGFVYFRGEYHLFYQFYPYDSVWGPMHWGHAKSKDLVTWEHLPVALAPDQDYDRNGCFSGSAIVKDDRLWLMYTGHIEEKTGVRQVQNMAFSDDGIHFEKISQNPVVTGTDLPDELIAADFRDPKLFEKDGRYYSVVAAKHKDNVGCIVLLGSDNLVEWQFESIFLKGVEHQGFMWECPDYFELDGKDCLIMSSMRYQREGDSYHNINSSLLFTGKVDWGEKRFIPESVQEIDHGQDFYAPQTLLDDQNRRILIAWMQTWGRTLPTHDQEHKWACAMTLPRILRLEDGKLRQFPVKKGQYQIQIDKDCHYHLGNDTDYLEFGYDSNAQQVYIDRSHLIQKILGEEEQDTSRRYVDIEAKELEVVLDKNSIEIFVNQGEASLTATYYLTVPAELSRID
>NZ_LN831051.1|WP_001113225.1|950914_952186_-|replication-associated-recombination-protein-A
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQITLSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHYDVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVVIDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWIKQDYLPEKIRNHHYFQAEDTGKYERALAQRKEAIDRLRKI
>NZ_LN831051.1|WP_000818079.1|952455_952695_+|hypothetical-protein
MKREVISNGNDGPSQEILIFTKQIRHWILSDQVISGKRKLFFREDTPKEILDLYENIKSKLDFAYQEVYSNNGLKKYEK
>NZ_LN831051.1|WP_000797237.1|952684_952933_+|hypothetical-protein
MKNRIIDVFEVVNRILVITVENPDFEDLRVNQFVKIGDKKYRVRSGPMIHSTPPQSVLDRDTFTIDYTDDELLDKEAVFTTH
>NZ_LN831051.1|WP_000192221.1|953075_953249_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MTQKEMVKLLTAHGWIKTRGGKGSHIKIEKQGERPITILHGELNKYTERGIGKQAGL
>NZ_LN831051.1|WP_000961810.1|953285_953738_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLVTYPALFYYDDTDGTEATYFVHFPDFEYSATQGEGISEALAMGSEWLGITVADLIESDGELPQPSDINSLSLIDNDPFKDDEDFVSTYDLDKSFISMVSVDVSEYLGSQEPIKKTLTIPKWADKLGREMGLNFSQTLTDAIADKKVQA
>NZ_LN831051.1|WP_000257100.1|954028_954499_+|DUF3013-family-protein
MATYGFLDVLEEELDKNFPFDFEISWDKRNHAVEVSFLLEAQNAAGVEMVDEDGEVSSDDILFEEAVLFYNPAKSTVNEEDYLTVIPYLPKKGFSREFLAYFALFLKDTAEVGLDALMDFLEDPEAEEFVMEWNQEVFEEGKVGLEEGEFYPYPKY

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Crispr_ID: NZ_LN831051_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN831051_3

1395180-1395251

Orphan

Consensus_repeat	Method
AGAGCGAGGCTGATTTTGTAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN831051_3

>merge|NZ_LN831051|3|1395180-1395251|CRISPRCasFinder
AGAGCGAGGCTGATTTTGTAAATCATTTTTTCCCGAGCCTAAAAATAAGAGAGCGAGGTTGATTTTGTAAAT

>NZ_LN831051|3|3|1395180-1395251|CRISPRCasFinder
AGAGCGAGGCTGATTTTGTAAAT	CATTTTTTCCCGAGCCTAAAAATAAG
AGAGCGAGGTTGATTTTGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN831051.1\|WP_000802934.1\|1395269_1395983_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_LN831051.1\|WP_000402071.1\|1391573_1391906_+\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NZ_LN831051.1\|WP_000712098.1\|1386427_1386802_+\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|184575
NZ_LN831051.1\|WP_000808288.1\|1393683_1394967_-\|uracil-transporter	unknown	unknown	gnl\|CDD\|236744
NZ_LN831051.1\|WP_001009007.1\|1387869_1388868_-\|SAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|366887
NZ_LN831051.1\|WP_000166701.1\|1402760_1403840_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_LN831051.1\|WP_000850024.1\|1401247_1401769_+\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	unknown	unknown	gnl\|CDD\|235365
NZ_LN831051.1\|WP_000237418.1\|1386795_1387125_+\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|172717
NZ_LN831051.1\|WP_001814693.1\|1391105_1391483_+\|DUF1934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378129
NZ_LN831051.1\|WP_000895723.1\|1396638_1397538_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235318
NZ_LN831051.1\|WP_029710210.1\|1397581_1399141_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_LN831051.1\|WP_000244451.1\|1400407_1401037_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_LN831051.1\|WP_001293845.1\|1401787_1402711_+\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NZ_LN831051.1\|WP_001003469.1\|1389729_1391034_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NZ_LN831051.1\|WP_000023524.1\|1388910_1389717_-\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509
NZ_LN831051.1\|WP_000219847.1\|1396076_1396637_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_LN831051.1\|WP_000863631.1\|1391917_1393489_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_LN831051.1\|WP_001844622.1\|1404152_1407329_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_LN831051.1\|WP_000773235.1\|1399865_1400408_+\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|224317
NZ_LN831051.1\|WP_001068669.1\|1387243_1387591_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418

Protein	Function_ID	Function_description	E-value
NZ_LN831051.1\|WP_000802934.1\|1395269_1395983_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	3.79502e-86
NZ_LN831051.1\|WP_000402071.1\|1391573_1391906_+\|putative-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	5.93935e-50
NZ_LN831051.1\|WP_000712098.1\|1386427_1386802_+\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|184575	PRK14221, PRK14221, fluoride efflux transporter CrcB.	1.11883e-61
NZ_LN831051.1\|WP_000808288.1\|1393683_1394967_-\|uracil-transporter	gnl\|CDD\|236744	PRK10720, PRK10720, uracil transporter; Provisional.	1.07534e-120
NZ_LN831051.1\|WP_001009007.1\|1387869_1388868_-\|SAP-domain-containing-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	2.22832e-08
NZ_LN831051.1\|WP_000166701.1\|1402760_1403840_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_LN831051.1\|WP_000850024.1\|1401247_1401769_+\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	gnl\|CDD\|235365	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR.	1.21354e-86
NZ_LN831051.1\|WP_000237418.1\|1386795_1387125_+\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|172717	PRK14229, PRK14229, fluoride efflux transporter CrcB.	9.19381e-53
NZ_LN831051.1\|WP_001814693.1\|1391105_1391483_+\|DUF1934-domain-containing-protein	gnl\|CDD\|378129	pfam09148, DUF1934, Domain of unknown function (DUF1934). Members of this family are found in a set of hypothetical bacterial proteins. Their precise function has not, as yet, been defined.	8.42688e-19
NZ_LN831051.1\|WP_000895723.1\|1396638_1397538_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235318	PRK04897, PRK04897, heat shock protein HtpX; Provisional.	0
NZ_LN831051.1\|WP_029710210.1\|1397581_1399141_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	5.95824e-108
NZ_LN831051.1\|WP_000244451.1\|1400407_1401037_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	2.52203e-105
NZ_LN831051.1\|WP_001293845.1\|1401787_1402711_+\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.93722e-162
NZ_LN831051.1\|WP_001003469.1\|1389729_1391034_-\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	5.07657e-171
NZ_LN831051.1\|WP_000023524.1\|1388910_1389717_-\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	8.42552e-118
NZ_LN831051.1\|WP_000219847.1\|1396076_1396637_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	5.12361e-86
NZ_LN831051.1\|WP_000863631.1\|1391917_1393489_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_LN831051.1\|WP_001844622.1\|1404152_1407329_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_LN831051.1\|WP_000773235.1\|1399865_1400408_+\|DUF177-domain-containing-protein	gnl\|CDD\|224317	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only].	7.39343e-42
NZ_LN831051.1\|WP_001068669.1\|1387243_1387591_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	4.91316e-70

>NZ_LN831051.1|WP_000808288.1|1393683_1394967_-|uracil-transporter
MKQESTVDLLLDVDQRPSDGKGILLSFQHVFAMFGATILVPLILGMPVSVALFASGVGTLIYMIATGFKVPVYLGSSFAFITAMSLAMKEMGGDVSAAQTGVILTGLVYVLVATSIRFVGTKWIDKLLPPIIIGPMIIVIGLGLAGSAVTNAGLVADGNWKNALVAVVTFLIAAFINTKGKGFLRIIPFLFAIIGGYLFALTLGLVDFTPVLKANWFEIPGFYLPFSTGGAFKEYNLYFGPEAIAILPIAIVTISEHIGDHTVLGQICGRQFLKEPGLHRTLLGDGIATSVSAFLGGPANTTYGENTGVIGMTRIASVSVIRNAAFIAIALSFLGKFTALISTIPNAVLGGMSILLYGVIASNGLKVLIKERVDFAQMRNLIIASAMLVLGLGGAILKLGPVTLSGTALSAMTGIILNLILPYENKD
>NZ_LN831051.1|WP_000863631.1|1391917_1393489_+|signal-recognition-particle-protein
MAFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAVGHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEIIKSPKIPTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLMNELRDVKALAQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDMLTLIEKASQEYDEQKALEMAEKMRENTFDFNDFIDQLDQVQNMGPMEDLLKMIPGMANNPALQNMKVDERQIARKRAIVSSMTPEERENPNLLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKNMPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMANKMKKAKKKRK
>NZ_LN831051.1|WP_000402071.1|1391573_1391906_+|putative-DNA-binding-protein
MEIEKTNRMNALFEFYAALLTDKQMNYIELYYADDYSLAEIAEEFGVSRQAVYDNIKRTEKILEDYEMKLHMYSDYIVRSQIFDQILERYPKDNFLQEQIEILTSIDNRE
>NZ_LN831051.1|WP_001814693.1|1391105_1391483_+|DUF1934-domain-containing-protein
MKIRMRNTIQFDEQLEVIDQLYDVEVHEKGDYSYLLFYNEEKEKVVIKFHGQELVMSRFSNPKTIMRFLKNSDSLAYIPTPMGMQEFIIQTSHYQVDRQKIELDYQLQNQEGHPFASYQLEITWG
>NZ_LN831051.1|WP_001003469.1|1389729_1391034_-|HD-domain-containing-protein
MNEKVFRDPVHNYIHVINQIIYDLINTKEFQRLRRIKQLGTSSYTFHGGEHSRFSHCLGVYEIARRITEIFEEKYPEEWNPAESLLTMIAALLHDLGHGAYSHTFEHLFDTDHEAITQEIIQSPETEIHQVLLQVAPDFPEKVASVIDHTYPNKQVVQLISSQIDADRMDYLLRDSYFTGASYGEFDLTRILRVIRPIENGIAFQRNGMHAIEDYVLSRYQMYMQVYFHPATRAMEVLLQNLLKRAKELYPKDKDFFARTSPHLLPFFEKNVTLSDYLALDDGVMNTYFQLWMTSPDKILADLSQRFVNRKVFKSITFSQEDQDQLASMRKLVEDIGFDPDYYTAIHKNFDLPYDIYRPESENPRTQIEILQKNGELAELSSLSPIVQSLAGSRHGDNRFYFPKEMLDQNSIFASITQQFLYLIENDHFTPNKN
>NZ_LN831051.1|WP_000023524.1|1388910_1389717_-|sugar-phosphatase
MSIKLIAVDIDGTLVNSQKEITPEVFSAIQDAKEAGVKVVIATGRPIAGVAKLLDDLQLRDQGDYVVTFNGALVQETATGHEIISESLTYEDYLDMEFLSRKLGVHMHAITKDGIYTANRNIGTYTVHESTLVSMPIFYRTPEEMAGKEIVKCMFIDEPEILDAAIEKIPAEFYEHYSINKSAPFYLELLKKNVDKGSAITHLAEKLGLTKDETMAIGDEENDRAMLEVVGNPVVMENGNPEIKKIAKYITKSNDESGVAHAIRTWVL
>NZ_LN831051.1|WP_001009007.1|1387869_1388868_-|SAP-domain-containing-protein
MNFFSKLFNLKQNNHNRDTNSDCNNFYLNKLECGLTPGQLILIDWTQKTGRNYNFPRYFKYSLQIDPESTHNQLYKLGYFTKNKTLSYLKVVELKTILSKHNLATSGKKAELITRIINNINVDKLDIPFEFKLTKEAQNLIIEHSDYIKAYYDKDISMEDYCKEKNNISFKATFGDIKWSLLNKQAHRNTVSGDFGCLSNTRKAQGRHLEQEGNIKHALIYYIESLIITISGLENNFSATDYPVYYPDSIPDYSLKHIQTLMESLSDDDYDFAFDEALFRFSILNANHFLSKEDIDYLRVNLPRSTAEEINNYLKKYECYSPLNNLELDDFE
>NZ_LN831051.1|WP_001068669.1|1387243_1387591_+|50S-ribosomal-protein-L19
MNPLIQSLTEGQLRTDIPSFRPGDTVRVHAKVVEGNRERIQIFEGVVIARKGAGISENYTVRKISNGVGVERIFPIHTPRVEKIEVVRYGKVRRAKLYYLRALQGKAARIKEIRR
>NZ_LN831051.1|WP_000237418.1|1386795_1387125_+|fluoride-efflux-transporter-CrcB
MVIVYLAIACGLGALVRYFFSRYNQVSKLPLGTLIANLLGCFLIGVFYNHVESKEVYAILATGFCGGLTTFSTLNDELQRLLSDKKVFYSYLTLTYIGGLVAIFLGILL
>NZ_LN831051.1|WP_000712098.1|1386427_1386802_+|fluoride-efflux-transporter-CrcB
MKKEQFYPLGIFLAAMLGGLVRYLVSTWLPASPDFPWGTLFVNYLGIFCLIYLVKGYLVYKGTSKGLILALGTGFCGGLTTFSSLMLDTVKLLDTGRYLSLILYLLLSIGGGLLLAYYLGRKKW
>NZ_LN831051.1|WP_000802934.1|1395269_1395983_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MKPKTFYNLLAEQNLPLSDQQKEQFERYFELLVEWNEKINLTAITDKEEVYLKHFYDSIAPILQGLIPNETIKLLDIGAGAGFPSLPMKILYPELDVTIIDSLNKRINFLQLLAQELDLNGVHFYHGRAEDFAQDKNFRAQYDFVTARAVARMQVLSELTIPYLKVGGKLLALKASNAPEELLEAKNALNLLFSKVEDNLSYALPNRDPRYITVVEKKKETPNKYPRKAGMPNKRPL
>NZ_LN831051.1|WP_000219847.1|1396076_1396637_+|LemA-family-protein
MTWIILGVLALVVIFVIVSYNGLVKNRMQTKEAWSQIDVQLKRRNDLLPNLIETVKGYAKYEGSTLEKVAELRNQVAAATSPAEAMKASDALTRQVSGIFAVAESYPDLKASANFVKLQEELTNTENKISYSRQLYNSVVSNYNVKLETFPSNIIAGMFGFKAADFLQTPEEEKSVPKVDFSGLGD
>NZ_LN831051.1|WP_000895723.1|1396638_1397538_+|zinc-metalloprotease-HtpX
MLFDQIASNKRKTWILLLVFFLLLALVGYAVGYLFIRSGLGGLVIALIIGFIYALSMIFQSTEIVMSMNGAREVDEQTAPDLYHVLEDMALVAQIPMPRIFIIDDPALNAFATGSNPQNAAVAATSGLLAIMNREELEAVMGHEVSHIRNYDIRISTIAVALASAITMLSSMAGRMMWWGGAGRRRSDDDRDGNGLEIIMLVVSLLAIVLAPLAATLVQLAISRQREFLADASSVELTRNPQGMINALDKLDNSKPMSRHVDDASSALYINDPKKGGGFQKLFYTHPPISERIERLKQM
>NZ_LN831051.1|WP_029710210.1|1397581_1399141_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MHYEHSRKGNSMIKINHLTITQNKDLRDLVSDLSMTIQDGEKVAIIGEEGNGKSTLLKTLMGEALSDFTIKGNIQSDYQSLAYIPQKLPEELKKKTLHDYFFLDSIDLDYSILYRLAEELHFDSNRFASDQEIGNLSGGEALKIQLIHELAKPFEILFLDEPSNDLDLETVDWLKGQIQKTRQTVIFISHDEDFLSETADTIVHLRLVKHRKEAETLVEHLDYDSYSEQRKANFAKQSQQAANNQRAYDKTMEKHRRVKQNVETALRATKDSTAGRLLAKKMKTVLSQEKRYEKAAQSMTQKPLEEEQIQLFFSDIQPLPASKVLVQLEKENLSIDDRVLAQELQLTVRGQEKIGIIGPNGVGKSTLLAKLKQFLNDKREISLGFMPQDYHKKLQLDLSPIAYLSKTGEKEELQKIQSHLASLNFSYPEMQHQIRSLSGGQQGKLLLLDLVLRKPNFLLLDEPTRNFSPTSQPQIRKLFATYPGGLITVSHDRRFLKEVCSSIYRLTEHGLELVNLEDV
>NZ_LN831051.1|WP_000773235.1|1399865_1400408_+|DUF177-domain-containing-protein
MKLNIQEIRKQSEGLNFEQTLDLVDDLRARNQEILDVKDILAVGKVQYEDRMYFLDYQLSYTIVLASSRSMEPVELVESYPVTEVFMEGATNQLDQEVLDDDLVLPIENGELDLAESVSDNILLNIPIKVLTAEEEAGQGFVSGNDWQIMTEEEYQAQQAVKKEENSPFAGLQGLFDGDE
>NZ_LN831051.1|WP_000244451.1|1400407_1401037_+|endonuclease-III
MVLSKKRARKVLEEIIALFPDAKPSLDFTNHFELLVAVMLSAQTTDAAVNKATPGLFVAFPTPQAMSVATESEIASHISRLGLYRNKAKFLKKCAQQLLDDFDGQVPQTREELESLAGVGRKTANVVMSVGFGIPAFAVDTHVERICKHHDIVKKSATPLEVEKRVMDILPPEQWLAAHQAMIYFGRAICHPKNPECDQYPQLYDFSNL
>NZ_LN831051.1|WP_000850024.1|1401247_1401769_+|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR
MKTKEVVDELTVKRAITRITYEIIERNKDLNKIVLAGIKTRGVFIAHRIQERLKQLENLSVPVVELDTKPFRDDVKSGEDTSLVSVDVTDREVILVDDVLYTGRTIRAAIDNIVGHGRPARVSLAVLVDRGHRELPIRPDYVGKNIPTSRSEEIIVEMTELDDQDRVLITEEA
>NZ_LN831051.1|WP_001293845.1|1401787_1402711_+|aspartate-carbamoyltransferase-catalytic-subunit
MSENQQALNHVVSMEDLTVDQVMKLIKRGIEFKNGAQLPYEDHPIVSNLFFEDSTRTHKSFEVAEIKLGLERLDFDVKTSSVNKGETLYDTILTLSALGVDVCVIRHPEVDYYRELIASPTITTSIINGGDGSGQHPSQSLLDLMTIYEEFGHFEGLKVAIAGDLDHSRVAKSNMQILKRLGSELFFAGPEEWRSQEFADYGQFVTIDEIIDQVDVMMFLRVQHERHDSGAVFSKEDYHAQHGLTQERYDRLKETAILMHPAPINRDVEIADHLVEAPKSRIVQQMTNGVFVRMAILESVLASRNAN
>NZ_LN831051.1|WP_000166701.1|1402760_1403840_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MTKRILVLEDGTVFEGKAFGADIDVTGEIVFNTGMTGYQESITDQSYNGQILTFTYPLVGNYGINRDDYESIIPTCKGVVVFEEARRASNWRNQMTLDEFLKAKKIPGISGIDTRALTKIIRKHGTMRATLTHVGDSMDHVTDQLQATVLPTDNIKQVSTKTSYPAPGVGLSVVLVDFGLKHSILRELSKRNCNVTVVPYSTTAEEILHLNPDGVMLSNGPGNPEDVPQALDMIRGVQGKIPIFGICMGHQLFAMANGAKTYKMKFGHRGFNHAVREIATGRVDFTSQNHGYAVSREDLPEHLIITHEEINDKSVEGVRHRYQPAFSVQYHPDAAPGPHDASYLFDEFIEMMEVFKQSN
>NZ_LN831051.1|WP_001844622.1|1404152_1407329_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIQKIMVIGSGPIIIGQAAEFDYAGTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTGLNMAMELSKNGILDELSVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSIAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYENQMLRDASLSIIRALKIEGGCNVQLALDPNSFKYYVIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEVINPVTGSTYAMFEPALDYVVAKIPRFPFDKFEKGERRLGTQMKATGEVMAIGRNIEESLLKACRSLEIGVHHNEIPELAAVSDDALIEKVVKAQDDRLFYVSEAIRRGYTPEEIAELTKIDIFYLDKLLHIFEIEQELGAHPQDLEVLKTAKLNGFSDRKIAELWGTTDDKVRQLRLENKIVPVYKMVDTCAAEFDSETPYFYSTYGWENESIRSDKESVLVLGSGPIRIGQGVEFDYATVHSVKAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQTAINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVLAARKIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVLIPGIMEHIERAGVHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMNIQFVIKDEKVYVIEVNPRASRTVPFLSKVTNIPMAQVATKLILGQSLSELGYQNGLYPESTRVHIKAPVFSFTKLAKVDSLLGPEMKSTGEVMGSDATLEKALYKAFEASYLHLPTFGNVVFTIADDAKEEALNLARRFQNIGYGILATEGTAAFFASHGLQAQPVGKIGDDDKDIPSFVRKGRIQAIINTVGTKRTADEDGEQIRRSAIEHGVPLFTALDTANAMLKVLESRSFVTEAI

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Crispr_ID: NZ_LN831051_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN831051_4

1537068-1537180

Orphan

Consensus_repeat	Method
ACAACAGGAGTAGATGAAAATGGAAACTTGATTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LN831051_4

>merge|NZ_LN831051|4|1537068-1537180|CRISPRCasFinder
ACAACAGGAGTAGATGAAAATGGAAACTTGATTGAACCACCTGTTAACGACATCCCAGAATATACTGAGCCAGTAGGTACAACAGGAGTGGATGAAAATGGAAACTTGATTGA

>NZ_LN831051|4|4|1537068-1537180|CRISPRCasFinder
ACAACAGGAGTAGATGAAAATGGAAACTTGATTGA	ACCACCTGTTAACGACATCCCAGAATATACTGAGCCAGTAGGT
ACAACAGGAGTGGATGAAAATGGAAACTTGATTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN831051.1\|WP_000417162.1\|1529686_1536166_+\|G5-domain-containing-protein	unknown	unknown	gnl\|CDD\|369436
NZ_LN831051.1\|WP_000201102.1\|1542718_1543498_+\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
NZ_LN831051.1\|WP_000201306.1\|1541880_1542732_+\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|236570
NZ_LN831051.1\|WP_000491151.1\|1548679_1549369_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_LN831051.1\|WP_000772340.1\|1521207_1524483_+\|ATP-dependent-nuclease-subunit-B	unknown	unknown	gnl\|CDD\|274291
NZ_LN831051.1\|WP_000767230.1\|1524479_1528130_+\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_LN831051.1\|WP_044811956.1\|1519502_1519949_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NZ_LN831051.1\|WP_000392561.1\|1543513_1545064_+\|ClC-family-H(+)/Cl(-)-exchange-transporter	unknown	unknown	gnl\|CDD\|238504
NZ_LN831051.1\|WP_001844778.1\|1516000_1516225_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319803
NZ_LN831051.1\|WP_162499286.1\|1552987_1554673_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
NZ_LN831051.1\|WP_001145974.1\|1547244_1548561_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|365904
NZ_LN831051.1\|WP_000964255.1\|1546813_1547170_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN831051.1\|WP_000174775.1\|1528299_1529478_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN831051.1\|WP_000873993.1\|1551934_1552924_-\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|161920
NZ_LN831051.1\|WP_000817878.1\|1550791_1551862_+\|tyrosine-recombinase-XerS	unknown	unknown	gnl\|CDD\|235339
NZ_LN831051.1\|WP_000431196.1\|1545772_1546669_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN831051.1\|WP_000022813.1\|1518060_1519365_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_LN831051.1\|WP_001809343.1\|1515684_1516056_+\|HAD-IB-family-phosphatase	unknown	unknown	gnl\|CDD\|319803
NZ_LN831051.1\|WP_000706434.1\|1516338_1517454_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_LN831051.1\|WP_000131079.1\|1517450_1517897_-\|YueI-family-protein	unknown	unknown	gnl\|CDD\|227793

Protein	Function_ID	Function_description	E-value
NZ_LN831051.1\|WP_000417162.1\|1529686_1536166_+\|G5-domain-containing-protein	gnl\|CDD\|369436	pfam07580, Peptidase_M26_C, M26 IgA1-specific Metallo-endopeptidase C-terminal region. These peptidases, which cleave mammalian IgA, are found in Gram-positive bacteria. Often found associated with pfam00746, they may be attached to the cell wall.	0
NZ_LN831051.1\|WP_000201306.1\|1541880_1542732_+\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	5.19854e-158
NZ_LN831051.1\|WP_000491151.1\|1548679_1549369_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	6.07968e-22
NZ_LN831051.1\|WP_000772340.1\|1521207_1524483_+\|ATP-dependent-nuclease-subunit-B	gnl\|CDD\|274291	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important; this model represents specifically RexB proteins as found in Streptococcus and Lactococcus. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LN831051.1\|WP_000767230.1\|1524479_1528130_+\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LN831051.1\|WP_044811956.1\|1519502_1519949_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.29836e-15
NZ_LN831051.1\|WP_000392561.1\|1543513_1545064_+\|ClC-family-H(+)/Cl(-)-exchange-transporter	gnl\|CDD\|238504	cd01031, EriC, ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.	4.85363e-163
NZ_LN831051.1\|WP_001809343.1\|1515684_1516056_+\|HAD-IB-family-phosphatase	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.00146e-40
NZ_LN831051.1\|WP_162499286.1\|1552987_1554673_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
NZ_LN831051.1\|WP_001145974.1\|1547244_1548561_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	1.77098e-55
NZ_LN831051.1\|WP_001844778.1\|1516000_1516225_+\|HAD-family-hydrolase	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.19358e-24
NZ_LN831051.1\|WP_000131079.1\|1517450_1517897_-\|YueI-family-protein	gnl\|CDD\|227793	COG5506, COG5506, Uncharacterized conserved protein [Function unknown].	9.24487e-56
NZ_LN831051.1\|WP_000873993.1\|1551934_1552924_-\|lipoate--protein-ligase	gnl\|CDD\|161920	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair].	8.8089e-98
NZ_LN831051.1\|WP_000817878.1\|1550791_1551862_+\|tyrosine-recombinase-XerS	gnl\|CDD\|235339	PRK05084, xerS, site-specific tyrosine recombinase XerS; Reviewed.	0
NZ_LN831051.1\|WP_000022813.1\|1518060_1519365_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_LN831051.1\|WP_000201102.1\|1542718_1543498_+\|ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	7.8274e-106
NZ_LN831051.1\|WP_000706434.1\|1516338_1517454_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0

>NZ_LN831051.1|WP_000417162.1|1529686_1536166_+|G5-domain-containing-protein
MEKYFGEKQERFSFRKLSVGLVSATISSLFFMSVLASSSVDAQETAGVHYKYVADSELSSEEKKQLVYDIPTYVENDDETYYLVYKLNSQNQLAELPNTGSKNERQALVAGASLAALGILIFAVSKKKVKNKTVLHLVLVAGMGNGVLVSVHALENHLLLNYNTDYELTSGEKLPLPKEISGYTYIGYIKEGKTTSDFEVSNQEKSAATPTKQQKVDYNVTPNFVDHPSTVQAIQEQTPVSSTKPTEVQVVEKPFSTELINPRKEEKQSSDSQEQLAEHKNLETKKEEKISPKEKTGVNTLNPQDEVLSGQLNKPELLYRDETIETKIDFQEEIQENPDLAEGTVRVKQEGALGKKVEIVRIFSVNNEEVSREIISTSTTAPVSRIVEKGTKKAQVIKEQAETGAEHKEVQSGAIVEPAIQPELPAAVLTDKGESAVQPELPEAVVSDKGVPEVQPALPEAVMTDKGDPEQVEPLPEYTGVQAGAIVEPEKVEPEYAGVQAGAIVEPEQVAPLPEYTGVQAGAIVEPEKVEAPKEYTGVQAGAIVEPEKVEAPKEYTGVQAGAIVEPEKVEPSKEYTGVQAGAIVEPEQIAPLPEYTGVQAGAIVEPEKVEALKEYTGKIEQPSAEDTKPNNENTNTPEEMSIQKKSSALINMNFITDSSKVTGVGSATFIAPNVLLTVAHNFINNSTDNTTGEFRGDKSKNVYEWVTPDGQKGTFTANNIHFYNKKDYPKGFIYDLAVIKLPETTGREHVELVKNYSKVNLNDKLNVHGYPAGKYTHLKDATVEMEQEYANNTYGVQYQGGNPGMSGGGIFNANGEVIGVHQNGAQNRSGGLILSPTQLAWIKSIIAGNEIPPVYDELYRHKDEKKDDAKDEKEVIKKLELRNISSVELYSKDGNKYRHVTSLASLPSNAENYFMKVKSENFKDVMLPVTSITNDTKDNRDVYKIVASANSLIQHENNNVLENYTYYLPKTQQSETGVYTSFKNLVDAMNSNPNGTFRLGATMDAREVELPDGQESYVNNVFHGILVGTNNEKYYAIYNLKKPLFGELNGATVEKLSLKDVNISAKDDTATLAKEANNNTHIDNVHADGAIAGERSIGGLVSQVNNSTISNSSYTGRITNTYKTVASYQIGGLVGKLSGPRGLIDKSFASIDLSSNATQGDQSIGGIVGAVENSALISNSYAEGNLNNVQRFANVGGVVGNLWDPVGGLEKSGRLSNVLSDVNVTNGNAIAGYNFNGIKANGTYSNKNNKVVNVVQEDDEILTKDSTVQRGEVLEDAQIKEKKATFVSKNTIKTEDFNFSSRYVTDYKNLENADSSKEKVYKNIEKLLPFYNRETIVKYGNLVETSSNLYNKELLSVVPMKDKEVISDINKNKSSINKLLLYYADNTSETLNVNYQTDFSNVAEYRIGGTNLIYTPNTLLRNYQNILDEVLPALNSVEYKSEAIRKVLDVSKDVSLTELYLEEQFNTTKTNLKDSLTKLLTADAAIAENNNKVIDNYVIEKIKNNKEALLLGLTYLERWYDFKYRDTKAKDLVMYHLDFFGKSNSSALDNVIELGKSGYNNLLAKNNVITYNVLLAKNYKTNNLFDALEKYRKAFVPDKTNNEWFKEQTKAYIVEEKSTIKEVSDKQSIAGSPYSIGVYDRLTSPSWKYPSMVLPLLTLPEKSVFIIANISTIGFGAYDRYRSKEHPAGTDLNDYVEKKAKEAAVRFRDHYDYWYRILDDKNKEKLYRSVLVYDAFRFGTDEKEDKDTYQATFETNHPAIKHFFGPAGNNVVHNSNGAYATGDAFYYMAYRMLDKDGAVTYTHEMTHNSDREIYLGGYGRRNGLGPEFYAKGLLQAPDHPNDPTVTINSILKYDQSEESTRLQVADPTQRFGSVDDLNKYMHNMFDVIYMLEILEGKAVAKLDTNQKYDLLRKIENEYKPDPDGNSVYATNVVRRLKPEELTKLTTFNSLIEHDIITRRGYVDEATYKRNGYYTINLFSPIYSALSSKIGTPGDLMGRRIAFELLAAKGYKDGMVPYISNQYEKEAKAQGKVITSYGKQIGLVTDEIVLSKVFNNQYNSWIDFKKDMYKEREDKFGKLNKVSFIDPNGSWARQQKVTIDNINRLEKMIEDAVKFDAEDEVAKLYPETNSRVLKLKKAIFKAYLDQTGDFRSSIFENKK
>NZ_LN831051.1|WP_000174775.1|1528299_1529478_+|hypothetical-protein
MTLPVRKSLHDAVLQASKADTWEQATKEWNEVSLIFNGIGRSNCVCGNAIKYAYELFNGVTGQRLFPIGSDCVRHFHRLSLDQQLEEEEKLLRKVENLTRKAQKKEKIKVNKSDFDERLLKWLWEKGVFKPNRGNQFAPERDYQLFLEVFQGGSWTKAEPKKKARMEEVLEKCIKPFLLGKSDDQLYLVKLGKEKIDYEQELRIQAEKERKKRDKIAKQYADNLVLAMGPAERAYQDYFGFTETLTQEERKWEKILFGKNRAERAIKAKQYQKELEKDQRIASQDPIERKQKQTWLLNSYFRELPEEKARFSRLLLEYRKSGEVPFSTEYLSDHLIDFFYKMKAFEFEIAPEQVRDFLKKSLQEDHRSSAQGSWIEGILLNCLKPFLERLVI
>NZ_LN831051.1|WP_000767230.1|1524479_1528130_+|helicase-exonuclease-AddAB-subunit-AddA
MKLIPFLSEEEIQKLQEAEANSSKEQKKTAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDDVDLKQHLGRQLADLPNAAIGTMDSFTQKFLGKHGYLLDIAPNFRILQNQSEQLLLENEVFHEVFEAHYQGKQKESFSHLLKNFAGRGKDERGLRQQVYKIYDFLQSTSNPQKWLSESFLKGFEKADFTSEKEKLTEQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARVVAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTWKLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFANTKLTPNPDNKAEFLLYDKDDTGEEEESQTETKLTGEMRLVIKEILKLHQEKGVAFKEIALLTSSRSRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKMASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNSNTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNRQSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVGKKISFDLPDFSTKEKVTGAEIGSATHELMQRIDLSQQLTLASLTETLKQVQTSQAVRDKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYENKIVLFDYKTDRYDEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVVKV
>NZ_LN831051.1|WP_000772340.1|1521207_1524483_+|ATP-dependent-nuclease-subunit-B
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFSITVTRFAQMARYLVLNDLPAKTTLDDIGLGLAFYKCLAELDPKDLRVYGAIKQDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRADLLLIFEKVTAYLNQGQLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHGKGVEIVIGAYASKKAYTSPFSEGNLYQASVKFLHHLASKYQTPAQDCSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILALKRYRFRQEDLINLLRTDLYTDLSQSDIDAFEQYIRYLGINGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQNAENLLQKWSVFLKEGAVTKQLQDLTTTLEAVEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQATEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGFRRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQGLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRLKANGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGKQNFFGAMYLEMAEPVQSLMAVKSLAGAVVEASKSMKYQGLFLEKESSYLGEFYNKNKANQLTDEEFQLLLDYNAYLYKKAAEKILAGRFAINPYTENGRSIAPYVQQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWFEKIREELNR
>NZ_LN831051.1|WP_044811956.1|1519502_1519949_-|tyrosine-type-recombinase/integrase
MRKHGLISKSTSKGYYQVAIPFMRLFCLVLVSIDYINCLSETTDKNWHKSDRIFVTNTGKPVHSSILSKSLQRANERLKKPIPKHLSPHIFRHTTISILSENKIPLKTITDRVGHSDSEVTTSIYTHVTKNMKDEAINVLDKVMKKIF
>NZ_LN831051.1|WP_000022813.1|1518060_1519365_+|phosphopyruvate-hydratase
MSIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGGFNTKVLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRGLETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFIGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLKSFYNLKK
>NZ_LN831051.1|WP_000131079.1|1517450_1517897_-|YueI-family-protein
MTDLSKQLLEKAHGGLKINPDEQRRYLGTFEERVLGYVDIDTANSPQLEKGFLFILENLQEKAEPLFVKISPTIEFDKQVFYLKEAKETDSQATIVSEEHITSPLGLVIHSNAPVQVEEKDLRLAFPKLWEVKKEEPAKTSLWKKWFS
>NZ_LN831051.1|WP_000706434.1|1516338_1517454_+|glycerate-kinase
MKIVIAPDSFKESLTAQQVAEAIKRGFQQSIADVECLLCPVGDGGEGTVDAIRHSLDLKEKWIQVTDPSGQKEAMRYFQKGELALFEVADLVGLGKIPLEKRNPLQIQTCGIGELILHLISKGIKDIYIGVGGTASNDGGLGIAAGLGYQFYDRDGNVLPASDQSLLNLASVSTENCYKIPEGVQIHILADVVSPLCGHQGATYTFGNQKGLHPTMFAVVDQAIQDFYEKFSPATLEIKGAGAGGGLAGGLCAFAQASIVSGIDTCLDLINFDKKVSDADLVVVGEGRLDSQSFAGKAPIGVAKRTPVGVPVIAICGSLAEDLPPLPFENIQAVFSILEKSEPLEDSLKNASLYLERTAANIGHLLNMCKI
>NZ_LN831051.1|WP_001844778.1|1516000_1516225_+|HAD-family-hydrolase
MERLAKSLGIAYFTANQLEVKEGLLTGKLVGQIISPQVKKETLEKWRKKLKLSKERTVAIGDGVNNLLMLKSAE
>NZ_LN831051.1|WP_001809343.1|1515684_1516056_+|HAD-IB-family-phosphatase
MSQVKGLCVLDVDGTLILEEVIDLLGREAGHEAEISQITSRAMRGELVFESSLRKRVSLLEGLPILVFDNVFNSIHLSLNVPEFISILQKNGILVGLVSGGFTPIVGEISKIPWYCLFHCQPA
>NZ_LN831051.1|WP_000201306.1|1541880_1542732_+|ribosome-biogenesis-GTPase-YlqF
MATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQWLKTNKDLEILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIFGLNYFKEHYPEKLAERFKQMKIEEEAPIIIMDMTRALGFRDDYDRFYSLFVKEVRDGKLGNYTLDTLEDLDGDD
>NZ_LN831051.1|WP_000201102.1|1542718_1543498_+|ribonuclease-HII
MATIKEIKELLATVKDLDNPIFLDLEKDNRSGVQKEISKRKKAIQAELDEDLRLEAMLSYEKELYKQGVTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEIFKAVQNQALSIGIGIMNNQVIDQVNIYEATKLAMKEAISQLSPQPEYLLIDAMKLDLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFAANAGYGTAKHLEGLEKLGVTPIHRTSFEPIKSLVLDKKES
>NZ_LN831051.1|WP_000392561.1|1543513_1545064_+|ClC-family-H(+)/Cl(-)-exchange-transporter
MEEQSEIVRSKKEFAFASSTILSQVGRGIIVGLVVGIIVGSFRFLIEKGFHLIQGLYQDQAHLFVNLFIIALFYLIICWLSAKLTRSEKDIKGSGIPQVEAELKGLMTLNWWGILWKKYILGILAIASGLMLGREGPSIQLGAVGGKGIAKWLKSSPVEERSLIASGAAAGLAAAFNAPIAGLLFVVEEVYHHFSRFFWVSTLAASLVANFVSLLIFGLTPVLDMPDNIPLMTLDQYWIYLVMGIFLGFSGFLYEKAVLNVGRVYDLIGQKIHLDRAYYPILAFILIIPVGIFLPHILGGGNQLVLSLTEQDFSFQVLLAYFLIRFIWSMISYGSGLPGGIFLPILALGSLLGALVGVICVNLGLVSQEQFPIFVILGMSGYFGAISKAPLTAMILVTEMVGDIRNLMPLGLVTLVSYIIMDLLKGAPVYEAMLEKMLPEEVSSEGEVTLIEIPVSDKIAGKQVHELNLPHNVLITTQVHNGKSQTVNGSTRMYLGDMIHLVIPKSEIGKVKDLLL
>NZ_LN831051.1|WP_000431196.1|1545772_1546669_-|hypothetical-protein
MENPWIDTTSEIYNGEKIIVATADLKYIKKLLNSKKYPPVDKVDDDANEKTKKAAKEKYKLRLNVYPQHFVGDIDNAKIIILSLNPGYSTEYYDAYKNSTNKDGIKYEQTIKENLEMEQPFFHAFELANESDLGYWGNKMKCWVEDHDEKDNEKDKEKYNKKIIKSLKKITKNIALAEFFPYHSISYNDMYDKLAKGTSPNSNRKIKDYLPTQKFLFRKIKKRIDDKNDKVIIILTRSFAKWYEAIPELKNYENCFEVNNPNNPSLKPKNILKVTRISVESKINNLLNDLNKEVQTQE
>NZ_LN831051.1|WP_000964255.1|1546813_1547170_+|hypothetical-protein
MLWDAVYQADNFRNGISVGINGKSIRYVKRFTYSFVTLPSNKLKKDGKDTFKTTSTSVLRVLNLSGGNYWGLPSKSGVASSVKELVNRNLHTGYNNLVINTIGMAIPQLNSTFNYFKL
>NZ_LN831051.1|WP_001145974.1|1547244_1548561_-|DNA-cytosine-methyltransferase
MPYAIDLFCGAGGCSEGLIQSGFHILFSSDISEMVEKTYVNRHEQLGLIQGKNTWFERRDIRELTGSDIKKHISELEIFKNKEIPEIDLIMGGPSCQGFSRAGRRDKSDPRNMLFGEYVRVVNEIHPKYIILENVEGFMDMQFLGYKGITGIEYPDGSVTPDILKSELNEIGYETLEPRILNAADYGVPQRRNRVIFIGYKKGLKQPQYPAPTHGPENYISLEEAIGDLIIDKEIKEMVNPSPSTYQNKSKEGRTPSLNGEPIASKKILNNEVSKQTDIVKERFSLFKQGETGTALRKRIFEEGIDLSGHKALIQLCCEKLNLSKQEVVSKFKDKNVSKEYLDVLLTKKNIRQRWAPDQPSATIVTIADDYISPWENRTFTVREMARCQSFDDSFEFLGKRTTGGLKRRVEVPQYTQVGNAVPPLLAKALADEILKVL
>NZ_LN831051.1|WP_000491151.1|1548679_1549369_-|helix-turn-helix-transcriptional-regulator
MFSGQRLKSLRKEKKMSQEKLGSLLNISKVAVCNWENAKSFPTMDNLNELAKVLEVEPHYFEEHSEVISIYRQLNKANKNKVVVYSSELLEEQEKFDNKVVDIFSYKTYKGLSAGTGYSYFGDGKYTLTYSTENIPHDFASWVVGDSMEPELPDGDVVLIKQSTNIEDGQIYAIEFNNQTYVKKVYRYKTYLRLVSINEKYDDIYAPYEENPRIIGKIVGHFTPIDDVK
>NZ_LN831051.1|WP_000817878.1|1550791_1551862_+|tyrosine-recombinase-XerS
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDMESFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETAGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDSVNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL
>NZ_LN831051.1|WP_000873993.1|1551934_1552924_-|lipoate--protein-ligase
MKYIINHSNDTAFNIALEEYAFKHLLDEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLNYTIISKEDENKAFDFKSFSTPVINTLAQLGVKAEFTGRNDLEIDGKKFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEMTEYVFSEEELAEINRIKDTKFGTWDWNYGKSPEFNVRRGTKFTSGKVEVFANVTESKIQDIKIYGDFFGIEDVAAVEDVLRGVKYEREDVLKALKTIDITRYFAGISREEIAEAVVG
>NZ_LN831051.1|WP_162499286.1|1552987_1554673_-|dihydrolipoyl-dehydrogenase
MPKAGVDMTEGQIVQWNKKVGEFVKEGEILLEIMTDKVSMELEAEEDGYLIAILKGDGETVPVTEVIGYLGEERENIPTAGAASPEASSVPVASTSNDDDKSDDAFDIVVIGGGPAGYVAAIKAAQFGGKVALVEKSELGGTCLNRGCIPTKTYLHNAEIIENIGHAANRGIVIENPNFTVDMEKLLETKSKVVNTLVGGVAGLLRSYGVTVHKGIGTITKDKNVLVNGSELLETKKIILAGGSKVSKINVPGMESPLVMTSDDILEMNEVPESLVIIGGGVVGIELGQAFMTFGSKVTVIEMMDCIVPAMDAEVSKNLRLILERKGMTILTGTKLQEIIEENGQLRIKVEGKDDIIASKALLSIGRMPDLEGIGEVEFELDRGCIKVNEYMETSVPGIYAPGDINGTKMLAHAAFRMGEVSAENALKGNHAVAKLNLTPAAIYTLPEVAAVGLTEEQAREKYDVAIGKFNFAANGRAIASDAAQGFVKVIVDKKYGEILGVHIIGPAAAELINEASSIIEMEITVEEMLKTIHGHPTYSEVMYEAFADVLGMAIHSPKKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

294549 : 348476

Staphylococcus_phage(33.33%)

tRNA,protease,bacteriocin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000987416.1\|294549_295227_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000166586.1\|295223_295787_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_000271493.1\|295796_296390_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_001284090.1\|296794_297895_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	5.0e-51	37.9
WP_000493842.1\|297879_298515_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.3e-43	46.9
WP_000456639.1\|298534_299740_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.5e-106	49.5
WP_001099502.1\|299740_300208_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.7e-40	52.6
WP_000018164.1\|300532_302482_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	3.4e-71	32.6
WP_000861968.1\|302687_303128_+	response regulator transcription factor	NA	NA	NA	NA
WP_000745054.1\|303124_303583_+	DUF3021 domain-containing protein	NA	NA	NA	NA
WP_000075789.1\|303892_305155_+	divalent metal cation transporter	NA	NA	NA	NA
WP_000849618.1\|305447_305918_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_000729037.1\|305995_306529_-	hypothetical protein	NA	NA	NA	NA
WP_000278864.1\|306580_307867_-	response regulator transcription factor	NA	NA	NA	NA
WP_174514584.1\|307878_309525_-	histidine kinase	NA	NA	NA	NA
WP_000532354.1\|309526_310141_-	YesL family protein	NA	NA	NA	NA
WP_000748380.1\|310275_310845_+	MptD family putative ECF transporter S component	NA	NA	NA	NA
WP_000444642.1\|310874_311567_-	ABC transporter permease	NA	NA	NA	NA
WP_000085677.1\|311568_312630_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.7e-29	35.7
WP_000465974.1\|312622_313996_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_000694507.1\|314095_314950_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000724951.1\|315103_315934_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001141654.1\|316037_316652_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_000862424.1\|317105_318332_-	MFS transporter	NA	NA	NA	NA
WP_000720788.1\|318403_319069_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000738307.1\|319080_319758_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000933479.1\|319779_320013_-	hypothetical protein	NA	NA	NA	NA
WP_000570712.1\|320298_321162_-	MutR family transcriptional regulator	NA	NA	NA	NA
WP_001017606.1\|321556_322729_-	nucleotide sugar dehydrogenase	M1IJ73	Paramecium_bursaria_Chlorella_virus	9.2e-80	43.2
WP_001283046.1\|322741_323491_-	PIG-L family deacetylase	NA	NA	NA	NA
WP_000399185.1\|323502_324213_-	hypothetical protein	NA	NA	NA	NA
WP_000777225.1\|324193_324697_-	asparagine synthase	NA	NA	NA	NA
WP_000432158.1\|324716_325043_-	hypothetical protein	NA	NA	NA	NA
WP_000288029.1\|325934_327551_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	3.0e-28	36.0
WP_000655036.1\|332327_333338_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA	NA	NA	NA
WP_000569807.1\|333327_333765_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_000865669.1\|333761_334445_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_000180803.1\|334622_334808_+\|bacteriocin	fratricide two-peptide bacteriocin subunit CibA	NA	NA	NA	NA
WP_000977347.1\|334809_334962_+\|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	NA	NA	NA	NA
WP_000639574.1\|335767_336001_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA
WP_000331961.1\|336002_337682_+	ribonuclease J	NA	NA	NA	NA
WP_000220964.1\|338060_339974_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_000193606.1\|339983_340439_-	NUDIX hydrolase	NA	NA	NA	NA
WP_001282978.1\|340579_341701_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_001035310.1\|342101_343937_-	pneumococcal surface protein A	NA	NA	NA	NA
WP_000058766.1\|344222_344468_-	hypothetical protein	M1Q0Z8	Streptococcus_phage	1.7e-15	57.6
WP_000770316.1\|344486_344726_-	hypothetical protein	NA	NA	NA	NA
WP_000072905.1\|345857_346586_-	hypothetical protein	NA	NA	NA	NA
WP_000424427.1\|346582_346936_-	hypothetical protein	NA	NA	NA	NA
WP_000619752.1\|346991_347894_-	hypothetical protein	NA	NA	NA	NA
WP_000424407.1\|348101_348476_-\|bacteriocin	SPH_0224 family bacteriocin-like peptide	NA	NA	NA	NA

DBSCAN-SWA_2

409591 : 492988

Streptococcus_phage(76.92%)

head,capsid,transposase,terminase,protease,portal,integrase,tail,holin,tRNA,bacteriocin

attL 437657:437677|attR 473137:473157

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000717500.1\|409591_410137_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.1e-22	33.9
WP_000182586.1\|410133_411156_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	1.6e-64	43.9
WP_000220665.1\|411192_412635_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.2e-54	34.9
WP_000361197.1\|412727_416453_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	3.3e-38	25.9
WP_000043300.1\|416654_417362_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D8KNF0	Synechococcus_phage	1.8e-41	39.2
WP_000801605.1\|417531_418881_-	HlyD family secretion protein	NA	NA	NA	NA
WP_000668306.1\|418893_421047_-	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	8.8e-44	27.8
WP_001093075.1\|421759_421990_-\|bacteriocin	bacteriocin-like peptide BlpU	NA	NA	NA	NA
WP_000136447.1\|422528_422762_-	acyl carrier protein	A0A2I7RIC8	Vibrio_phage	3.3e-05	40.6
WP_000717461.1\|422767_423760_-	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_000616164.1\|423756_424527_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000366351.1\|424523_425693_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_000009173.1\|425841_426852_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_000076480.1\|427214_427652_-	CoA-binding protein	NA	NA	NA	NA
WP_001844860.1\|427736_430370_-	DNA polymerase I	A0A218MKQ4	uncultured_virus	1.3e-57	30.1
WP_060544779.1\|430625_430976_+\|transposase	PD-(D/E)XK nuclease family transposase	NA	NA	NA	NA
WP_161801537.1\|431190_431295_+	damage-inducible protein CinA	NA	NA	NA	NA
WP_000492760.1\|431299_431533_+	hypothetical protein	NA	NA	NA	NA
WP_000010163.1\|432074_433043_-	ribose-phosphate diphosphokinase	A0A1V0SHF7	Hokovirus	4.0e-44	34.7
WP_001819301.1\|433187_433811_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_001844651.1\|433792_433987_-	hypothetical protein	NA	NA	NA	NA
WP_001809263.1\|434011_434509_-	carbonic anhydrase	NA	NA	NA	NA
WP_078065389.1\|434581_435943_-	DNA repair protein RadA	NA	NA	NA	NA
WP_000691236.1\|435956_436472_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_000701992.1\|436473_436917_-	dUTP diphosphatase	Q2WG49	Clostridium_botulinum_D_phage	2.1e-29	47.3
WP_000291875.1\|437103_437571_-	nucleoside deaminase	NA	NA	NA	NA
437657:437677	attL	NA	NA	NA	NA
WP_001030863.1\|437852_438002_+	hypothetical protein	C5J952	Streptococcus_phage	9.1e-17	95.9
WP_001209433.1\|438143_438323_+	hypothetical protein	Q3BLW4	Phage_SK137	3.5e-23	96.6
WP_000350458.1\|438592_439549_-	N-acetylmuramoyl-L-alanine amidase family protein	A0A1S5S8I6	Streptococcus_phage	1.5e-144	100.0
WP_001186237.1\|439548_439884_-\|holin	phage holin	A0A1S5S8N1	Streptococcus_phage	7.5e-51	100.0
WP_001165344.1\|439887_440304_-\|holin	phage holin family protein	A0A1S5SCE8	Streptococcus_phage	1.9e-67	100.0
WP_000852247.1\|440313_440664_-	hypothetical protein	A0A1S5S8I0	Streptococcus_phage	2.8e-64	100.0
WP_001091109.1\|440666_440870_-	hypothetical protein	A0A060QN53	Streptococcus_phage	1.3e-26	100.0
WP_000589852.1\|447449_448172_-	hypothetical protein	A0A1S5S8M4	Streptococcus_phage	1.8e-134	100.0
WP_000918322.1\|448168_450928_-	hypothetical protein	A0A1S5S8I3	Streptococcus_phage	2.4e-288	100.0
WP_001227145.1\|451205_451625_-	hypothetical protein	A0A1S5S8H9	Streptococcus_phage	8.7e-73	100.0
WP_000191278.1\|451636_452215_-	hypothetical protein	A0A1S5S8L9	Streptococcus_phage	2.6e-107	100.0
WP_000777003.1\|452226_452550_-	hypothetical protein	A0A1S5SEP5	Streptococcus_phage	3.5e-53	100.0
WP_000063886.1\|452546_452894_-	HK97 gp10 family phage protein	A0A1S5SEL8	Streptococcus_phage	8.8e-47	100.0
WP_000267061.1\|452890_453190_-\|head	phage head closure protein	A0A1S5S8I2	Streptococcus_phage	3.7e-49	100.0
WP_000371962.1\|453176_453458_-\|head,tail	phage head-tail connector protein	A0A1S5S8H0	Streptococcus_phage	1.8e-45	100.0
WP_000120767.1\|453460_453751_-	hypothetical protein	A0A1S5S8Q9	Streptococcus_phage	7.7e-36	100.0
WP_001037661.1\|453762_454935_-\|capsid	phage major capsid protein	A0A1S5S8J5	Streptococcus_phage	1.6e-180	100.0
WP_001172113.1\|454931_455507_-\|head,protease	HK97 family phage prohead protease	A0A1S5S8L3	Streptococcus_phage	2.6e-104	100.0
WP_000510807.1\|455490_456693_-\|portal	phage portal protein	A0A1S5S8H6	Streptococcus_phage	8.8e-227	100.0
WP_001002923.1\|456710_456929_-	hypothetical protein	A0A1S5SEK2	Streptococcus_phage	1.3e-32	100.0
WP_000527303.1\|456936_458667_-\|terminase	terminase large subunit	A0A1S5S8L1	Streptococcus_phage	0.0e+00	100.0
WP_001118282.1\|458659_459052_-\|terminase	P27 family phage terminase small subunit	A0A1S5S8F2	Streptococcus_phage	1.6e-65	100.0
WP_025173811.1\|459196_459502_-	endonuclease	A0A1S5S8G6	Streptococcus_phage	9.2e-56	100.0
WP_000238198.1\|459621_459813_-	hypothetical protein	A0A1S5S8H4	Streptococcus_phage	3.2e-30	100.0
WP_000397552.1\|459976_460519_-\|integrase	site-specific integrase	A0A1S5S8G1	Streptococcus_phage	1.4e-99	100.0
WP_000736391.1\|460707_461109_-	transcriptional activator	A0A1S5S8P9	Streptococcus_phage	6.2e-68	100.0
WP_153231720.1\|461320_461479_-	hypothetical protein	NA	NA	NA	NA
WP_001067627.1\|461475_461712_-	DUF3310 domain-containing protein	A0A1S5S8G0	Streptococcus_phage	6.0e-39	100.0
WP_000612387.1\|461711_462101_-	hypothetical protein	A0A1S5S8G9	Streptococcus_phage	4.7e-73	100.0
WP_000772905.1\|462611_463037_-	DUF1642 domain-containing protein	A0A1S5S8E4	Streptococcus_phage	1.2e-77	100.0
WP_000969678.1\|463026_463356_-	hypothetical protein	A0A141E1Y9	Streptococcus_phage	2.3e-60	100.0
WP_000872730.1\|463327_463537_-	hypothetical protein	A0A1S5S8G8	Streptococcus_phage	8.5e-29	100.0
WP_000233203.1\|463523_463691_-	hypothetical protein	A0A1S5SEY3	Streptococcus_phage	5.0e-24	100.0
WP_000891963.1\|463817_464045_-	hypothetical protein	A0A1S5S8I1	Streptococcus_phage	2.3e-40	100.0
WP_000470303.1\|464044_464239_-	hypothetical protein	A0A1S5SCY7	Streptococcus_phage	1.8e-28	100.0
WP_000228214.1\|464253_465024_-	ATP-binding protein	A0A1S5S8G3	Streptococcus_phage	5.2e-140	100.0
WP_001289767.1\|465163_465991_-	phage replisome organizer N-terminal domain-containing protein	A0A1S5SCN0	Streptococcus_phage	3.5e-150	100.0
WP_001156934.1\|465983_466280_-	hypothetical protein	A0A1S5S8D4	Streptococcus_phage	4.0e-48	100.0
WP_000462827.1\|466295_466616_-	hypothetical protein	A0A1S5S8E5	Streptococcus_phage	5.6e-48	100.0
WP_000370958.1\|466701_466959_-	hypothetical protein	A0A1S5SFD5	Streptococcus_phage	1.2e-43	100.0
WP_001002346.1\|466971_467685_-	ORF6C domain-containing protein	A0A1S5S8E1	Streptococcus_phage	5.2e-134	100.0
WP_000456433.1\|467738_468164_+	hypothetical protein	A0A1S5S8M8	Streptococcus_phage	2.1e-37	100.0
WP_001004503.1\|468158_468320_-	hypothetical protein	A0A1S5S8H5	Streptococcus_phage	4.5e-22	100.0
WP_001057654.1\|468330_468528_-	hypothetical protein	A0A1S5SEL5	Streptococcus_phage	3.6e-29	100.0
WP_000032100.1\|468544_468748_-	hypothetical protein	A0A1S5S8F3	Streptococcus_phage	1.2e-27	100.0
WP_000573356.1\|468740_469115_-	hypothetical protein	A0A1S5S8E6	Streptococcus_phage	3.5e-65	100.0
WP_001001334.1\|469158_469305_-	hypothetical protein	A0A141E188	Streptococcus_phage	2.5e-19	100.0
WP_000495824.1\|469589_469958_+	helix-turn-helix transcriptional regulator	A0A1S5S8C4	Streptococcus_phage	3.2e-63	100.0
WP_000156422.1\|469957_470191_+	hypothetical protein	A0A1S5S8D5	Streptococcus_phage	4.7e-36	100.0
WP_000285962.1\|470190_470454_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5S8E8	Streptococcus_phage	1.2e-43	100.0
WP_001174227.1\|470884_471697_+	restriction endonuclease	A0A1S5S8D3	Streptococcus_phage	5.7e-129	100.0
WP_000876726.1\|471871_473020_+\|integrase	site-specific integrase	A0A1S5S8M0	Streptococcus_phage	1.6e-217	100.0
WP_000205044.1\|473251_474538_-	adenylosuccinate synthase	L7Y4J5	Megavirus	2.7e-72	37.1
473137:473157	attR	NA	NA	NA	NA
WP_000939546.1\|474768_475005_-	hypothetical protein	NA	NA	NA	NA
WP_000588897.1\|482440_482920_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_000744537.1\|483041_485000_-\|protease	ATP-dependent zinc metalloprotease FtsH	H8ZJI5	Ostreococcus_tauri_virus	5.4e-109	45.8
WP_000892184.1\|485015_485558_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	2.7e-10	28.9
WP_001208983.1\|485561_486839_-\|tRNA	tRNA lysidine(34) synthetase TilS	A7K9Y8	Acanthocystis_turfacea_chlorella_virus	2.5e-06	24.1
WP_001224756.1\|486835_488104_-	serine hydrolase	NA	NA	NA	NA
WP_000041909.1\|488223_488592_-	septum formation initiator family protein	NA	NA	NA	NA
WP_001234978.1\|488584_488851_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_000258090.1\|488908_492418_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_000163932.1\|492418_492988_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA

DBSCAN-SWA_3

510762 : 519516

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000073427.1\|510762_512241_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.2e-94	40.5
WP_000266657.1\|512291_513389_-	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_000455903.1\|513391_513760_-	S4 domain-containing protein YaaA	A0A1X9I5V8	Streptococcus_phage	7.0e-18	57.3
WP_000424262.1\|513918_515169_+	insulinase family protein	A0A1X9I714	Streptococcus_phage	2.7e-93	42.3
WP_000170194.1\|515165_516449_+	insulinase family protein	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	1.1e-17	30.0
WP_001227958.1\|516490_517312_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000712132.1\|517322_517868_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_000835715.1\|517864_518692_+	energy-coupling factor transporter ATPase	W8CYL7	Bacillus_phage	3.5e-17	33.3
WP_000510406.1\|518676_519516_+	energy-coupling factor transporter ATPase	W8CYL7	Bacillus_phage	1.5e-15	32.6

DBSCAN-SWA_4

870374 : 877706

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000351904.1\|870374_871103_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	9.0e-09	22.3
WP_000105314.1\|871121_871691_+	segregation/condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	6.6e-15	34.9
WP_001222228.1\|871677_872400_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_000821640.1\|872399_872642_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.3e-17	59.4
WP_000858242.1\|872866_873832_-	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000764310.1\|873927_874680_-	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	3.7e-13	30.2
WP_001193669.1\|874676_875633_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_000777252.1\|875622_876582_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	3.4e-56	40.5
WP_000167817.1\|877004_877706_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	9.2e-35	36.5

DBSCAN-SWA_5

1162469 : 1169223

Streptococcus_phage(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000162483.1\|1162469_1162976_+	dihydrofolate reductase	G3MBI7	Bacillus_virus	6.7e-27	42.5
WP_000106346.1\|1163177_1164410_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.2e-131	59.0
WP_000422409.1\|1164418_1165006_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_001140412.1\|1165016_1165397_+	RidA family protein	NA	NA	NA	NA
WP_000163033.1\|1165448_1166339_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.9e-06	29.8
WP_001231093.1\|1166335_1167313_+	YvcK family protein	A1IMD5	Streptococcus_phage	9.8e-184	99.4
WP_000011276.1\|1167309_1168221_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	2.3e-155	100.0
WP_000081003.1\|1168254_1169223_-	NAD(P)/FAD-dependent oxidoreductase	Q9JRK7	Streptococcus_phage	2.8e-66	100.0

DBSCAN-SWA_6

1232900 : 1274251

Streptococcus_phage(21.43%)

tRNA,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001833809.1\|1232900_1233044_+\|transposase	transposase	NA	NA	NA	NA
WP_001844799.1\|1233010_1233226_+	hypothetical protein	NA	NA	NA	NA
WP_000200313.1\|1233212_1233746_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_001833808.1\|1234103_1234358_+	hypothetical protein	NA	NA	NA	NA
WP_001021420.1\|1234468_1235575_+	MucBP domain-containing protein	NA	NA	NA	NA
WP_000248973.1\|1235532_1236213_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_000348122.1\|1236435_1237305_+	aquaporin family protein	NA	NA	NA	NA
WP_001040724.1\|1238180_1239377_+	elongation factor Tu	A0A076FFS6	Aureococcus_anophage	7.3e-32	29.6
WP_000850587.1\|1240870_1241953_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.2e-37	31.0
WP_000915901.1\|1241949_1242927_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_001813436.1\|1243141_1243519_+\|transposase	PD-(D/E)XK nuclease family transposase	NA	NA	NA	NA
WP_001844203.1\|1243753_1245145_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_001099669.1\|1245258_1246101_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.9e-51	40.2
WP_001846081.1\|1246373_1246658_+	hypothetical protein	NA	NA	NA	NA
WP_012677106.1\|1246624_1246951_+	hypothetical protein	NA	NA	NA	NA
WP_000038731.1\|1247319_1248237_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_000164758.1\|1248496_1250533_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_000371286.1\|1250574_1250832_+	DUF896 family protein	NA	NA	NA	NA
WP_000673680.1\|1251054_1252299_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	3.8e-55	52.7
WP_000915945.1\|1252316_1252922_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	4.5e-54	54.2
WP_000175414.1\|1252981_1253905_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_000036769.1\|1254199_1255579_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_000138517.1\|1255730_1256606_+	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA
WP_000689945.1\|1256606_1257188_+	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA
WP_001097986.1\|1257208_1257856_-	hemolysin III family protein	NA	NA	NA	NA
WP_000858730.1\|1257852_1258299_-	DUF1836 domain-containing protein	NA	NA	NA	NA
WP_000405832.1\|1258433_1258928_+	GNAT family N-acetyltransferase	M1PSC3	Streptococcus_phage	1.9e-42	52.1
WP_001170353.1\|1258927_1259440_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.1e-45	55.0
WP_000889093.1\|1259452_1259809_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.2e-33	57.3
WP_001102484.1\|1259966_1260767_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_000590986.1\|1260766_1261510_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-29	41.0
WP_000926600.1\|1261587_1261812_+	DUF4059 family protein	NA	NA	NA	NA
WP_000272302.1\|1261877_1262789_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	4.5e-90	51.8
WP_000855749.1\|1262827_1263556_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_001272941.1\|1263600_1264212_-	peptide deformylase	E3SLL2	Synechococcus_phage	4.9e-16	42.4
WP_001844748.1\|1264734_1265451_+	CapA family protein	A0A0N9SJ77	Staphylococcus_phage	2.1e-26	31.1
WP_000972921.1\|1265809_1266637_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_000290648.1\|1266638_1267274_+\|holin	1-alkyl-2-acetylglycerophosphocholine esterase	A0A2K9L661	Tupanvirus	4.3e-07	28.2
WP_001102214.1\|1267357_1268083_+	CppA family protein	NA	NA	NA	NA
WP_000872220.1\|1268079_1269015_+	serine hydrolase	NA	NA	NA	NA
WP_000071665.1\|1269023_1269920_+	EamA family transporter	NA	NA	NA	NA
WP_000936186.1\|1269962_1270661_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000065723.1\|1270802_1272365_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.4e-19	32.8
WP_001136120.1\|1272668_1272854_+	hypothetical protein	NA	NA	NA	NA
WP_025173796.1\|1272834_1273122_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_000691855.1\|1273356_1273551_+\|transposase	transposase	NA	NA	NA	NA
WP_179944384.1\|1273474_1274251_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1720194 : 1729836

Streptococcus_phage(88.89%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000345254.1\|1720194_1720842_-	replication initiator protein A	A0A2P0VK56	Streptococcus_phage	7.0e-13	33.7
WP_001261452.1\|1720950_1721469_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_001166878.1\|1721695_1722565_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	2.3e-115	75.7
WP_000358228.1\|1722567_1722885_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	2.9e-28	60.0
WP_000806708.1\|1722924_1723815_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	6.4e-73	51.4
WP_000033388.1\|1723811_1724450_-	dTMP kinase	M1PSC7	Streptococcus_phage	2.9e-75	67.6
WP_000689700.1\|1724669_1725467_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	1.1e-60	50.9
WP_000254688.1\|1725470_1726733_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.3e-140	65.0
WP_001844793.1\|1726742_1727873_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-114	58.4
WP_000728264.1\|1727952_1729836_-\|holin	phosphorylcholine esterase CbpE	Q332B9	Clostridium_botulinum_C_phage	9.5e-10	23.7

DBSCAN-SWA_8

2034745 : 2085801

Moumouvirus(16.67%)

tRNA,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000591096.1\|2034745_2036089_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.2e-46	35.8
WP_000613655.1\|2036170_2037055_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000539991.1\|2037066_2037684_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_001118983.1\|2037699_2039913_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_000089982.1\|2040471_2041338_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
WP_000108204.1\|2041401_2043651_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_001844589.1\|2043910_2044177_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000597991.1\|2044905_2045907_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000909142.1\|2045974_2048377_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_000619941.1\|2048453_2048963_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001813261.1\|2048962_2050009_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	1.6e-27	32.8
WP_000151832.1\|2050600_2052016_-	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	1.9e-23	23.7
WP_000120566.1\|2052028_2053867_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_000584538.1\|2053884_2054724_-	PRD domain-containing protein	NA	NA	NA	NA
WP_001192124.1\|2059337_2060141_-	Fic family protein	NA	NA	NA	NA
WP_000033774.1\|2060415_2061171_-	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_000032223.1\|2061240_2063892_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	4.9e-153	41.5
WP_000550021.1\|2063884_2064463_-	AAA family ATPase	NA	NA	NA	NA
WP_000124545.1\|2064462_2065023_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000580663.1\|2065009_2065459_-	flavin reductase	NA	NA	NA	NA
WP_000038624.1\|2065871_2066267_-	hypothetical protein	NA	NA	NA	NA
WP_000119708.1\|2066362_2066617_-	DUF1912 family protein	NA	NA	NA	NA
WP_000752894.1\|2066626_2067961_-	DUF438 domain-containing protein	NA	NA	NA	NA
WP_000368737.1\|2067960_2068194_-	DUF1858 domain-containing protein	NA	NA	NA	NA
WP_000668195.1\|2068506_2068647_-	hypothetical protein	NA	NA	NA	NA
WP_001068161.1\|2068643_2068826_-	hypothetical protein	NA	NA	NA	NA
WP_000840405.1\|2068827_2069607_-	hypothetical protein	NA	NA	NA	NA
WP_001273601.1\|2069885_2070236_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_000039205.1\|2070486_2073279_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	2.3e-20	22.8
WP_001041390.1\|2073295_2073595_-	YlxQ-related RNA-binding protein	NA	NA	NA	NA
WP_000857562.1\|2073587_2073881_-	YlxR family protein	NA	NA	NA	NA
WP_000032273.1\|2073902_2075039_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_001808691.1\|2075082_2075562_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_001266083.1\|2075687_2076323_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_000363002.1\|2076319_2077114_-	phosphotransferase family protein	NA	NA	NA	NA
WP_000394044.1\|2077274_2077886_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000760532.1\|2078312_2079002_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000877381.1\|2079053_2079437_-	hypothetical protein	NA	NA	NA	NA
WP_001810529.1\|2080065_2080437_-	hypothetical protein	NA	NA	NA	NA
WP_000346296.1\|2080904_2081024_-	hypothetical protein	NA	NA	NA	NA
WP_001809846.1\|2081127_2081277_-\|bacteriocin	bacteriocin-like peptide BlpO	NA	NA	NA	NA
WP_001099490.1\|2081520_2081724_-\|bacteriocin	two-peptide bacteriocin subunit BlpN	NA	NA	NA	NA
WP_001093255.1\|2081739_2081994_-\|bacteriocin	two-peptide bacteriocin subunit BlpM	NA	NA	NA	NA
WP_000205159.1\|2082275_2084429_+	peptide cleavage/export ABC transporter BlpA	W8CYL7	Bacillus_phage	2.4e-41	27.7
WP_001069064.1\|2084439_2085801_+\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LN831051

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection